Unit-9 Regression Analysis
Unit-9 Regression Analysis
Unit-9 Regression Analysis
UNIT 9
GENETIC MATERIAL
Structure
9.1 Introduction 9.5 Transformation
Objectives Experiments for
9.2 Types of Genetic Material Confirmation of DNA as
9.3 Deoxyribonucleic Acid Genetic Material
(DNA) Griffith’s Experiment
9.1 INTRODUCTION
This is the first unit of second volume. Here we will study about the structure of
genetic material which is responsible for various activities of living organisms
and passing of characters from one generation to other. Cells use different
types of molecules to store diverse types of information to keep themselves
alive.
Most of you are familiar with nucleic acids which are molecules of great
importance to cell because of their role in storage, transmission and
expression of genetic information. The two major nucleic acids i.e. DNA
(deoxyribonucleic acid) and RNA (ribonucleic acid) play an important role in
storage of genetic information and expression of the information via protein
synthesis. Both DNA and RNA differ in their chemical nature and functions
they perform in the cell. In most of the cells, DNA is present within the nucleus.
DNA acts as the genetic material in majority of living organisms. In some
organisms such as viruses, RNA is the main hereditary material. In some
organisms such as bacteriophages, both DNA as well RNA carry genetic
information for the cells.
In this unit we are going to discuss the genetic material of the cell because it
carries and stores fundamental information necessary for life of every living 9
Block 3 DNA-Blueprint of Life
organism. You will be studying about structure of DNA and RNA, their roles in
organism and some experiments that provided the evidence that DNA is the
hereditary material present in plants. This is an introductory unit for DNA
structure.
Objectives
Objectives
After studying this unit, you would be able to:
Fig 9.3: Double helix structure of DNA. Chemical structure for three base pair is
12 shown.
Unit 9 Genetic Material
DNA is made of 4 types of nucleotides which are arranged variously to form
long chain molecules. The DNA molecule consists of two strands that wind
around one another to form a shape known as a double helix. Each strand has
a backbone made of sugar (deoxyribose) and phosphate groups. To each
sugar is attached one of bases - adenine (A), cytosine (C), guanine (G), and
thymine (T). The two strands are held together by hydrogen bonds between
the bases; adenine (A) binds with thymine (T), and cytosine (C) binds with
guanine (G). Each base is attached to a sugar molecule and a phosphate
molecule. This pairing results in formation of base pairs. Base, sugar, and
phosphate together form a nucleotide. Nucleotides are arranged in such a way
that two long strands with their sugar –phosphate are on outside of the helix
and their bases are on the inside. This spiral is called a double helix. You can
imagine the structure of the double helix like a ladder, with base pairs running
through the middle like rings and sugar and phosphate molecules along the
outside. Helix is absolutely regular and it can be distinguished by a major and
minor groove.
In 1962 Watson, Crick, and Wilkins jointly received the Nobel Prize in
Physiology or Medicine for their determination of the structure of
deoxyribonucleic acid (DNA). In 1953 Rosalind Franklin and Maurice
Wilkins used X-ray diffraction technique called X-ray crystallography to figure
out the structure of DNA. X-rays were beamed through crystals of
the DNA molecule and photographic film was used to record the scattering of
X rays. The DNA crystals resulted in a cross shape on the X-ray film which is
typical of a molecule with a helix shape. They found that DNA molecules are
helical with two periodicities along their long axis, a primary one of 3.4 Å and a
secondary one of 34 Å.
CURA being a young organization, was less firm on the way research was to be done.
14 Franklin worked quite independently, a condition that suited her. Franklin worked for
Unit 9 Genetic Material
CURA until 1947 and published a number of papers on the physical structure of coal.
Then she moved to Paris for doing research work. An old friend introduced her to
Marcel Mathieu who directed most of the research in France. He was quite impressed
with Franklin's work and offered her a job as a "chercheur" in the Laboratoire Central
des Services Chimiques de l'Etat. There she learned X-ray diffraction techniques from
Jacques Mering.
In 1951, Franklin was presented with a 3-year research scholarship at King's College.
Franklin began working as a research associate in the biophysics unit, where director
John Randall used her expertise and X-ray diffraction techniques (mostly of proteins
and lipids in solution) on DNA fibers. Here Maurice Wilkins was already using X-ray
crystallography to try to solve the DNA problem at King's College. Studying DNA
structure with X-ray diffraction, Franklin and her student Raymond Gosling made an
amazing discovery: They took pictures of DNA and discovered that there were two
forms of it, a dry "A" form and a wet "B" form. One of their X-ray diffraction pictures of
the "B" form of DNA, known as Photograph 51, became famous as critical evidence in
identifying the structure of DNA. The photo was acquired through 100 hours of X-ray
exposure from a machine Franklin herself had refined. From this she deduced the
basic dimensions of DNA strands, and that the phosphates were on the outside of
what was probably a helical structure.
John Desmond Bernal, United Kingdom’s one of the most well-known and
controversial scientists and a pioneer in X-ray crystallography, spoke highly of Franklin
around the time of her death in 1958. "As a scientist Miss Franklin was distinguished
by extreme clarity and perfection in everything she undertook," he said. "Her
photographs were among the most beautiful X-ray photographs of any substance ever
taken. Their excellence was the fruit of extreme care in preparation and mounting of
the specimens as well as in the taking of the photographs."
She presented her data at a lecture in King's College that James Watson was
attending. In his book The Double Helix, Watson admitted to not paying attention at
Franklin's talk and not being able to fully describe the lecture and the results to Francis
Crick. Watson and Crick were at the Cavendish Laboratory and had been working on
solving the DNA structure. Franklin did not know Watson and Crick as well as Wilkins
did and never truly collaborated with them. It was Wilkins who showed Watson and
Crick the X-ray data Franklin obtained. The data confirmed the 3-D structure that
Watson and Crick had theorized for DNA.
Despite her cautious and diligent work ethic, Franklin had a personality conflict with
colleague Maurice Wilkins, one that would end up costing her greatly. In January
1953, Wilkins changed the course of DNA history by disclosing without Franklin's
permission or knowledge her Photo 51 to competing scientist James Watson, who was
working on his own DNA model with Francis Crick at Cambridge.
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Block 3 DNA-Blueprint of Life
Upon seeing the photograph, Watson said, "My jaw fell open and my pulse
began to race," according to author Brenda Maddox, who in 2002 wrote a book
about Franklin titled Rosalind Franklin: The Dark Lady of DNA.
The two scientists did, in fact, use what they saw in Photo 51 as the basis for their
famous model of DNA, which they published on March 7, 1953, and for which they
received a Nobel Prize in 1962. Crick and Watson were also able to take most of the
credit for the finding: When publishing their model in Nature magazine in April 1953,
they included a footnote acknowledging that they were "stimulated by a general
knowledge" of Franklin's and Wilkins' unpublished contribution, when in fact, much of
their work was rooted in Franklin's photo and findings. Randall and the Cambridge
laboratory director came to an agreement and both Wilkins' and Franklin's articles
were published second and third in the same issue of Nature. Still, it appeared that
their articles were merely supporting Crick and Watson’s model.
Franklin left Cambridge in 1953 and went to the Birkbeck lab to work on the structure
of tobacco mosaic virus. She published a number of papers on the subject and she
actually did a lot of the work while suffering from cancer. She died from cancer in
1958. In the fall of 1956, Franklin discovered that she had ovarian cancer. She
continued working throughout the following two years, despite having three operations
and experimental chemotherapy. She experienced a 10-month remission and worked
up until several weeks before her death on April 16, 1958, at the age of 37.
In 1962, the Nobel Prize in Physiology or Medicine was awarded to James Watson,
Francis Crick, and Maurice Wilkins for solving the structure of DNA. The Nobel
committee does not give posthumous prizes.
You will realize that one most important feature to know that within the helix an
adenine is always adjacent to thymine in the other strand and similarly
guanine is always adjacent to cytosine in one polynucleotide. This means
adenine is linked to thymine and cytosine to guanine. The distance between
two base pairs is 3.4 Å and there are 10 base pairs in each turn. The molecule
has a diameter of 20 Å in the molecule. Purines which are adenine and
guanine need a little higher space as compared to two pyrimidines i.e.
cytosine and thymine. When a pyrimidine always pairs with a purine, space
could remain constant (Fig. 9.6). Normally they are written as A, G, C and T
(Fig.9.7).
Fig. 9.6: A double helix model of DNA as proposed by Watson and Crick.
A+T=G+C
The analysis of DNA obtained from different organs of body of the same
individual or from different individuals belonging to the same species showed
no differences in the relative composition of different bases. The studies
suggested that:
For example, this ratio is 0.4 for Bacillus whereas human DNA has the A:G
ratio of 1.56
SAQ 1
a) Fill in the blanks:
iii) Justus Liebig isolated a substance from beef muscle and named it
as ……………….. .
The self-complementary sequences in the RNA strand base pair with bases
present in the other strand (intrachain base-pairing) which results in folding of
the ribonucleotide chain into complex structural forms consisting of bulges and
helices (Fig.9.9). The three-dimensional structure of RNA is critical for its
stability and function, allowing the ribose sugar and the nitrogenous bases to
be modified in numerous different ways by cellular enzymes that attach
chemical groups (e.g., methyl groups) to the chain. Such modifications
facilitate the formation of chemical bonds between distant regions in the RNA
strand, leading to complex contortions in the RNA chain, which further
stabilizes the RNA structure. RNAs can also form complexes with molecules
known as ribonucleoproteins (RNPs).
(a) (b)
Fig 9.9: a) Comparison of DNA and RNA; b) Single strand of RNA. 19
Block 3 DNA-Blueprint of Life
Depending upon their presence in the plant and nature, RNA is of two types,
namely genetic RNA and non-genetic RNA.
Genetic RNA- In most of the plant viruses, RNA is the genetic material. Such
RNA contains information which is normally found in DNA. In other words,
RNA has replaced DNA in such cases. The RNA present in these viruses
could be single stranded or double stranded. In most of the bacteriophages,
RNA is the genetic material (see Table 9.1). Viroids and virusoids are other
two classes of small RNAs (~350 bases) found in plants. Viroids function
independently without encapsidation by a protein coat, while Virusoids (also
called satellite RNAs) are encapsidated by plant viruses packaged together
with a viral genome. Virusoids cannot replicate independently, and need an
association with the virus. The double stranded RNA follows the same rules of
base pairing as DNA.
The non-genetic RNA species found in cells for specific functions include: i)
Anti-sense RNA also called mic RNA (messenger RNA inhibiting
complementary RNA) is synthesized sometimes on the strand complementary
to the one used for mRNA synthesis. This is used for regulation of DNA
synthesis and gene expression both in vivo and in vitro; ii) HnRNA is
synthesized from split genes in eukaryotes.
Table 9.1: Different RNA viruses and the nature of RNA associated with
them.
Plant Viruses
Mosaic virus (MV) Single stranded
Wound Double stranded
Animal Viruses
Influenza virus Single stranded
Rous sarcoma Single stranded
Poliomyelitis Single stranded
Reovirus Double stranded
Bacteriophages
MS2, F2, r17 Single stranded
On the basis of functioning, RNA has been classified into three types:
Ribosomal RNA (rRNA) - This is the most stable kind of RNA and is
associated with the ribosomes. They constitute about 60 to 80% of the total
RNA is the cell. rRNA is the part of the ribosomes. It catalyzes the synthesis of
proteins. It plays a major part in the binding to mRNA, recruitment of tRNA,
and catalysis of peptide bond formation between amino acids.
Transfer RNA (tRNA) - This is also known as soluble RNA (sRNA). It makes
another small fraction (10-15%) of RNA. It is a small RNA chain of about 80
nucleotides. These are the smallest molecules of RNA and work as adapter
molecules for carrying amino acid molecules to the site of protein synthesis.
The non-coding RNA molecule acts as the intermediate between nucleotide
and amino acid sequences.All these three types of RNA are found in all
organisms (Fig. 9.10).
Apart from above described RNA some other RNA molecules are also found in
the cell.
Small Nuclear RNA (snRNA) mediates the processing of primary transcripts
(Protein sequences) in the nucleus to produce functional elements which then
are exported to the cytosol during DNA transcription.
Small nucleolar RNA (snoRNA) are small RNAs (about 60-300 nucleotides)
found in the cell nucleolus that play a role in the synthesis of ribosomes. 21
Block 3 DNA-Blueprint of Life
MicroRNAs (miRNAs) is a small non-coding RNA that is single-stranded,
containing only 22 nucleotides. These are found in plants, all animals, and
some viruses and play a role in RNA silencing and post-transcriptional gene
expression regulation.
You can comprehend the basic differences between DNA and RNA by going
through Fig. 9.11.
SAQ 2
a) State whether following statements are True or False:
i) The four bases present in RNA, are adenine, guanine, uracil and
cytosine.
iii) RNAs are unable to form complexes with protein molecules known
as ribonucleoproteins (RNPs).
iv) Viroids and virusoids are other two classes of small RNAs (~350
bases) found in plants.
i) snRNA
ii) snoRNA
iii) miRNA
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Unit 9 Genetic Material
They started the experiment by mixing the radioactive phage with intact
bacterial cells. They allowed phage particles to attach to the bacterial cell
surface and let them inject their genetic material into the cells. Then they
removed protein coats from the surface of the bacterial cells by agitating the
suspension in a blender and recovered the bacterial cells by centrifugation.
They measured radioactivity in the supernatant liquid and in the pellet of
bacteria at the bottom of the tube. The studies showed that most of the (65%)
24 of the 32P remained in the bacterial cells while the bulk of the 35S was released
Unit 9 Genetic Material
in the surrounding medium. Since 32P labelled the viral DNA and 35S labelled
the viral protein, they concluded that DNA had been injected into the bacterial
cells and functions as the genetic material of phage T2.
It is important to know that when the 32P-labelled phages were used in the
experiment, the majority of the radioactivity was found inside the bacterial
cells, which indicates that the phage DNA has entered the cells. This 32P can
also be recovered from phage progeny. But when the 35S-labelled phages
were used in the experiment, most of the radioactive material was found in the
phage ghosts, thus it indicates that the phage protein had never entered the
bacterial cell. Thus it was concluded that DNA is the hereditary material and
the phage proteins are simply structural packaging which is discarded after
delivering the viral DNA to the bacterial cell.
ii) Amount of DNA in gametes is half that of DNA present in somatic cells.
SAQ 3
a) State whether following statements are ‘True’ or ‘False’ for Griffith
experiment.
ii) In his experiment he found that R strain lacks the ability to produce
mucous coat but can produce pneumonia.
iii) In his experiment he found that S strain has the ability to produce
mucous coat but was unable to produce pneumonia.
9.6 SUMMARY
• DNA acts as the genetic material in majority of living organisms except in
some viruses where RNA is present as the main hereditary material. In
some organisms such as bacteriophages, both DNA as well RNA carry
genetic information for the cells.
• Levene was the first to discover the order of the three major components
of a single nucleotide (phosphate-sugar-base), carbohydrate component
of DNA and RNA. He proposed that nucleic acids were composed of a
series of nucleotides. Watson and Crick determined the structure of
deoxyribonucleic acid (DNA). Rosalind Franklin and Maurice Wilkins
26 used X-ray diffraction technique to deduce the structure of DNA.
Unit 9 Genetic Material
• RNA is a single stranded molecule. It consists of ribose nucleotides
attached by phosphodiester bonds. The four bases present in RNA are
adenine, guanine, uracil and cytosine. Three types -messenger RNA
(mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA) are present
in all organisms.
4. Describe the first experiment which confirmed that DNA carries genetic
information.
9.8 ANSWERS
Self-Assessment Questions
1. a) i) 4
ii) Chromosomes
iv) nuclein
b) Refer to Fig.9.10
Terminal Questions
1. Refer to Subsection 9.3.1
Acknowledgement
Fig.9.4 : Source:
https://d2cbg94ubxgsnp.cloudfront.net/Pictures/480xAny/6/3/1/8
4631_feature-dna_fig2_300.jpg
Fig.9.11 : https://www.google.co.in/imgres?imgurl=https%3A%2F%2Fcdn.
technologynetworks.com%
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