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Transcription of Dna

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Transcription

Dr.Vidya.S.Patil
Objectives
• Enumerate different types of RNA with their functions

• Outline the process of transcription in prokaryotes

• Explain the difference between prokaryotic and


eukaryotic transcription

• Describe post transcriptional modifications of RNA


Types and Functions of RNA
• mRNA – carries genetics information from DNA to cytosol,
where it is used as a template for protein synthesis

• rRNA – complex structures which serve as sites of protein


synthesis

• tRNA – has anticodon which recognises codon on mRNA and


carries respective aminoacids to the site of protein synthesis

• Small nuclear RNA (SnRNA) – catalytic RNA molecules


which are involved in mRNA splicing

• Micro RNA (miRNA)– they modulate functions of mRNA


Transcription
• Process where the information in DNA is copied to mRNA.

• mRNA carries information as genetic code which is complementary


to the DNA base sequence on template strand.

DNA strand having same sequence of mRNA is called Coding


strand (antitemplate/ nontemplate strand)

mRNA goes to cytosol and serves as a template for the process of


translation
Overview of Transcription
Coding strand 5’ G-T-C-A-A-T-C-C-G - 3’
DNA
Template strand
3’ C-A-G-T-T-A-G-G-C- 5’
Transcribed
mRNA 5’ G-U-C-A-A-U-C-C-G - 3’
Primary transcript

Complementary to template strand


Same as coding strand
Transcription in Prokaryotes
• RNA polymerase
•Core unit – made of 2α,2β and ω subunits which has 5’ 3’ RNA
polymerase activity
•σ subunit – enables RNA polymerase to recognise promoter
region on DNA
Steps
1. Initiation
2. Elongation
3. Termination
Initiation
• Promoter region - These are specific areas in DNA
upstream the gene to be transcribed which act as sites of
transcription start signals for initiation.
TATA box (Pribnow box) -10 region
-35 sequence

5’ 3’
Transcription unit
A transcription unit is the region of DNA that includes not only the
gene for mRNA synthesis, but also the initiator, promoter and the
terminator regions.
The transcription cycle.
The transcription cycle can be described in six steps:
(1) Template binding and closed RNA polymerase-promoter complex
formation: RNAP binds to DNA and then locates a promoter (P),
(2) Open promoter complex formation: once bound to the promoter,
RNAP melts the two DNA strands to form an open promoter
complex; this complex is also referred to as the pre - initiation
complex or PIC. Strand separation allows the polymerase to access
the coding information in the template strand of DNA
(3) Chain initiation: using the coding information of the template
RNAP catalyzes the coupling of the first base (often a purine) to the
second, template- directed ribonucleoside triphosphate to form a
dinucleotide (in this example forming the dinucleotide 5′
pppApNOH 3′).
Transcription bubble
(4) Promoter clearance: after RNA chain length reaches ~10–20 nt, the
polymerase undergoes a conformational change and then is able to move
away from the promoter, transcribing down the transcription unit.
The sigma factor should be released from the promoter region, then only it
can enter into chain elongation. Until it escapes the promoter region, it is in
the stage of ‘Abortive initiation’ where the RNA polymerase sits on promoter
region and synthesises small stretches of RNA oligonucleotides.

If it does not get cleared, the transcription becomes aborted.


The transcription cycle.

(5) Chain elongation: Successive residues are added to the 3′-OH


terminus of the nascent RNA molecule until a transcription
termination signal (T) is encountered.
(6) Chain termination and RNAP release: Upon encountering the
transcription termination site RNAP undergoes an additional
conformational change that leads to release of the completed RNA
chain, the DNA template and RNAP. RNAP can rebind to DNA
beginning the promoter search process and the cycle is repeated.
Elongation

(Coding strand)

Nucleotide sequence of RNA transcript is same as Coding strand


Elongation
Termination
Termination – rho independent

Palindrome sequences
Termination
Replication Vs Transcription
Answer now….
• Ribonucleotides are used in transcription
• U replaces T
• Primer is not required
• Only the gene is transcribed
• No active proofreading
Summary of Steps
1. Initiation
1. Template binding and closed complex formation
2. Open complex formation (Preinitiation complex)
3. Chain initiation
4. Promoter clearance
2. Chain elongation
3. Chain termination and RNAP release
Thank you

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