Matlab Patch Clamp Technique

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About Patch Clamp Technique

Example document for demo purposes based on excerpts from relevant Wikipedia articles:
http://en.wikipedia.org/wiki/Patch_clamp, http://en.wikipedia.org/wiki/Electrophysiology

The patch clamp technique is a laboratory technique in electrophysiology that allows the study
of single or multiple ion channels in cells. The technique can be applied to a wide variety of
cells, but is especially useful in the study of excitable cells such as neurons.

Electrophysiology

Electrophysiology is the study of the electrical properties of biological cells and tissues. It includes
measurements of the electrical activity of neurons, and particularly action potential activity.

"Current Clamp" is a common technique in electrophysiology. This is a whole-cell current clamp


recording of a neuron firing due to it being depolarized by current injection

Basic technique

Patch clamp recording uses, as an electrode, a glass micropipette that has an open tip diameter of
about one micrometer, a size enclosing a membrane surface area or "patch" that often contains
just one or a few ion channel molecules. This type of electrode is distinct from the "sharp
microelectrode" used to impale cells in traditional intracellular recordings, in that it is sealed
onto the surface of the cell membrane, rather than inserted through it. In some experiments, the
micropipette tip is heated in a microforge to produce a smooth surface that assists in forming a
high resistance seal with the cell membrane. The interior of the pipette is filled with a solution
matching the ionic composition of the bath solution, as in the case of cell-attached recording, or
the cytoplasm for whole-cell recording. A chlorided silver wire is placed in contact with this
solution and conducts electric current to the amplifier. The investigator can change the
composition of this solution or add drugs to study the ion channels under different conditions.
The micropipette is pressed against a cell membrane and suction is applied to assist in the
formation of a high resistance seal between the glass and the cell membrane. The high resistance
of this seal makes it possible to electronically isolate the currents measured across the membrane
patch with little competing noise, as well as providing some mechanical stability to the
recording.

Unlike traditional two-electrode voltage clamp recordings, patch clamp recording uses a single
electrode to record currents. Many patch clamp amplifiers do not use true voltage clamp circuitry
but instead are differential amplifiers that use the bath electrode to set the zero current level. This
allows a researcher to keep the voltage constant while observing changes in current.

Alternatively, the cell can be current clamped in whole-cell mode, keeping current constant
while observing changes in membrane voltage .
Electrical diagram

From Stefan Mergler’s page http://patch-clamp.info/techniques/techniques.htm

Simplified diagram of a patch-clamp amplifier and a substitute circuit of a whole-cell


configuration : Rf: feedback resistor, Vcom: command voltage, Vpip: pipette potential, Vout:
output voltage proportional to the current. The circuit of the amplifier represents a so-called
current-to-voltage converter, which is installed in a little box (preamplifier) near the pipette.
After breaking through the membrane, the whole-cell configuration is obtained. Thereby,
membrane fragments and other cell debris are sucked near the pipette opening and could
subsequently increase the serial resistance RS.

See Also: Scholarpedia article on dynamic properties of cell membranes:


http://www.scholarpedia.org/article/Electrical_properties_of_cell_membranes#Membrane_patch:
_temporal_dynamics

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