Scribd Logo
Upload

Welcome to Scribd!

  • 15 views

    Fastqc Table

    Uploaded by

    santoshbioinfo

    Copyright:

    © All Rights Reserved
    Download as DOC, PDF, TXT or read online from Scribd

    Fastqc Table

    Uploaded by

    santoshbioinfo
    15 views3 pages

    Copyright

    © © All Rights Reserved

    Available Formats

    DOC, PDF, TXT or read online from Scribd

    Did you find this document useful?

    Is this content inappropriate?

    Copyright:

    © All Rights Reserved
    Download as DOC, PDF, TXT or read online from Scribd
    Download as doc, pdf, or txt
    15 views3 pages

    Fastqc Table

    Uploaded by

    santoshbioinfo

    Copyright:

    © All Rights Reserved
    Download as DOC, PDF, TXT or read online from Scribd
    Download as doc, pdf, or txt
    of 3

    6016 fastqc before

    %
    Sample Name Length % Failed M Seqs
    GC
    root_SRR7339993_1 47% 151 bp 18% 35.9
    root_SRR7339993_2 47% 151 bp 18% 35.9
    root_SRR7339994_1 46% 151 bp 18% 46.1
    root_SRR7339994_2 46% 151 bp 18% 46.1
    root_SRR7340000_1 46% 151 bp 18% 41.0
    root_SRR7340000_2 46% 151 bp 18% 41.0
    stem_SRR7339995_1 47% 151 bp 27% 44.5
    stem_SRR7339995_2 47% 151 bp 27% 44.5
    stem_SRR7339996_1 47% 151 bp 27% 42.9
    stem_SRR7339996_2 47% 151 bp 27% 42.9
    stem_SRR7340001_1 47% 151 bp 27% 46.0
    stem_SRR7340001_2 47% 151 bp 18% 46.0

    6016 fastqc after

    Sample Name % GC Length % Failed M Seqs


    root_SRR7339993_1 46% 149 bp 27% 32.4
    root_SRR7339993_2 46% 145 bp 27% 32.4
    root_SRR7339994_1 46% 150 bp 27% 40.2
    root_SRR7339994_2 46% 142 bp 18% 40.2
    root_SRR7340000_1 46% 149 bp 27% 36.6
    root_SRR7340000_2 46% 146 bp 18% 36.6
    stem_SRR7339995_1 47% 149 bp 27% 40.5
    stem_SRR7339995_2 47% 146 bp 27% 40.5
    stem_SRR7339996_1 47% 149 bp 27% 39.2
    stem_SRR7339996_2 47% 146 bp 27% 39.2
    stem_SRR7340001_1 46% 150 bp 27% 40.5
    stem_SRR7340001_2 46% 142 bp 27% 40.5
    6068 fastqc before

    Sample Name % GC Length % Failed M Seqs


    SRR6228874_1 46% 151 bp 18% 47.0
    SRR6228874_2 46% 151 bp 18% 47.0
    SRR6230068_1 46% 151 bp 18% 35.9
    SRR6230068_2 46% 151 bp 18% 35.9
    SRR6230074_1 46% 151 bp 18% 39.9
    SRR6230074_2 46% 151 bp 18% 39.9
    SRR6230158_1 47% 151 bp 27% 36.7
    SRR6230158_2 47% 151 bp 18% 36.7
    SRR6230164_1 46% 151 bp 27% 45.6
    SRR6230164_2 47% 151 bp 18% 45.6
    SRR6232741_1 51% 151 bp 18% 35.3
    SRR6232741_2 51% 151 bp 18% 35.3

    6068 fastqc after

    Sample Name % GC Length % Failed M Seqs


    unfixrm_SRR6228874_1 46% 150 bp 27% 42.3
    unfixrm_SRR6228874_2 46% 146 bp 18% 42.3
    unfixrm_SRR6230068_1 46% 150 bp 18% 31.2
    unfixrm_SRR6230068_2 45% 141 bp 18% 31.2
    unfixrm_SRR6230074_1 46% 150 bp 18% 34.8
    unfixrm_SRR6230074_2 46% 142 bp 18% 34.8
    unfixrm_SRR6230158_1 46% 150 bp 27% 32.4
    unfixrm_SRR6230158_2 46% 141 bp 27% 32.4
    unfixrm_SRR6230164_1 46% 150 bp 27% 42.1
    unfixrm_SRR6230164_2 46% 145 bp 27% 42.1
    unfixrm_SRR6232741_1 51% 150 bp 18% 32.5
    unfixrm_SRR6232741_2 51% 144 bp 18% 32.5
    9178 before

    Sample Name % GC Length % Failed M Seqs


    SRR6964405_1 46% 151 bp 27% 47.7
    SRR6964405_2 46% 151 bp 27% 47.7
    SRR6964408_1 46% 151 bp 27% 52.5
    SRR6964408_2 46% 151 bp 18% 52.5
    SRR6964411_1 46% 151 bp 27% 47.6
    SRR6964411_2 46% 151 bp 27% 47.6
    SRR6964412_1 46% 151 bp 27% 41.9
    SRR6964412_2 46% 151 bp 27% 41.9
    SRR6964413_1 46% 151 bp 18% 56.2
    SRR6964413_2 46% 151 bp 18% 56.2
    SRR6964414_1 46% 151 bp 18% 47.0
    SRR6964414_2 46% 151 bp 18% 47.0

    9178 after

    Sample Name % GC Length % Failed M Seqs


    unfixrm_SRR6964405_1 46% 149 bp 27% 42.8
    unfixrm_SRR6964405_2 46% 145 bp 27% 42.8
    unfixrm_SRR6964408_1 46% 150 bp 27% 47.4
    unfixrm_SRR6964408_2 46% 145 bp 27% 47.4
    unfixrm_SRR6964411_1 46% 150 bp 27% 43.8
    unfixrm_SRR6964411_2 46% 145 bp 27% 43.8
    unfixrm_SRR6964412_1 46% 149 bp 27% 38.0
    unfixrm_SRR6964412_2 46% 146 bp 27% 38.0
    unfixrm_SRR6964413_1 46% 149 bp 27% 50.9
    unfixrm_SRR6964413_2 46% 147 bp 27% 50.9
    unfixrm_SRR6964414_1 46% 149 bp 27% 41.9
    unfixrm_SRR6964414_2 46% 146 bp 27% 41.9

    You might also like