Polymerase (Poly Meaning Many, Mer Meaning Pieces, and - Ase Meaning

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The process of 

DNA replication is catalyzed by a type of enzyme called DNA


polymerase (poly meaning many, mer meaning pieces, and –ase meaning
enzyme; so an enzyme that attaches many pieces of DNA). Observe Figure 1: the
double helix of the original DNA molecule separates (blue) and new strands are
made to match the separated strands. The result will be two DNA molecules, each
containing an old and a new strand. Therefore, DNA replication is called
semiconservative. The term semiconservative refers to the fact that half of the
original molecule (one of the two strands in the double helix) is “conserved” in the
new molecule. The original strand is referred to as the template strand because it
provides the information, or template, for the newly synthesized strand.

Figure 1. By Madprime(wikipedia) (DNA replication split horizontal) CC BY-SA 2.0

Figure 2. Primer and Template

DNA replication relies on the double-stranded nature of the molecule. One double


stranded DNA molecule, when replicated, will become two double-stranded
molecules, each containing one original strand and one newly synthesized strand.
You remember that the two strands of DNA run antiparallel: one from the 5′ to the
3′, and the other from the 3′ to the 5′. The synthesis of the new DNA strand can
only happen in one direction: from the 5′ to the 3′ end. In other words, the new
bases are always added to the 3′ end of the newly synthesized DNA strand. So if
the new nucleotide is always added to the 3′ end of an existing nucleotide, where
does the first nucleotide come from? In fact, DNA polymerase needs an “anchor”
to start adding nucleotides: a short sequence of DNA or RNA that is
complementary to the template strand will work to provide a free 3′ end. This
sequence is called a primer (Figure 2).

How does DNA polymerase know in what order to add nucleotides? Specific base


pairing in DNA is the key to copying the DNA: if you know the sequence of one
strand, you can use base pairing rules to build the other strand. Bases form pairs
(base pairs) in a very specific way. Figure 3 shows how A (adenine) pairs
with T (thymine) and G (guanine) pairs with C (cytosine). It is important to
remember that this binding is specific: T pairs with A, but not with C. The molecular
recognition occurs because of the ability of bases to form specific hydrogen bonds:
atoms align just right to make hydrogen bonds possible. Also note that a larger
base (purine, A or G) always pairs with a smaller base (pyrimidine, C or T).

Figure 3. DNA chemical structure. Modification of DNA chemical structure by Madeleine Price Ball; CC-
BY-SA-2.0

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