Orca Manual 3 0 3
Orca Manual 3 0 3
Orca Manual 3 0 3
Version 3.0.3
Input Description
I
Contents
List of Figures IX
1 General Information 1
1.1 Program Components . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
1.2 Units and Conversion Factors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
4 Input of Coordinates 32
5.9.8 The EPR g-Tensor and the Zero-Field Splitting Tensor . . . . . . . . . . . . . 213
5.9.9 Mössbauer Parameters . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 216
5.9.10 Broken-Symmetry Wavefunctions and Exchange Couplings . . . . . . . . . . 218
5.10 Molecular Dynamics Simulations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 220
5.10.1 Basic Input . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 220
5.11 QM/MM Calculations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 221
5.11.1 ORCA and Gromacs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 221
6.4.6
Restarting SCF Calculations . . . . . . . . . . . . . . . . . . . . . . . . . . . 290
6.4.7
Changing the Order of Initial Guess MOs and Breaking the Initial Guess
Symmetry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 291
6.5 SCF Convergence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 292
6.5.1 Convergence Tolerances . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 292
6.5.2 Dynamic and Static Damping . . . . . . . . . . . . . . . . . . . . . . . . . . . 293
6.5.3 Level Shifting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 294
6.5.4 Direct Inversion in Iterative Subspace (DIIS) . . . . . . . . . . . . . . . . . . 294
6.5.5 An alternative DIIS algorithm: KDIIS . . . . . . . . . . . . . . . . . . . . . . 295
6.5.6 Approximate Second Order SCF (SOSCF) . . . . . . . . . . . . . . . . . . . . 295
6.5.7 Full Second Order SCF (Newton-Raphson SCF) . . . . . . . . . . . . . . . . 296
6.5.8 Fractional Occupation Numbers . . . . . . . . . . . . . . . . . . . . . . . . . . 298
6.6 Choice of Wavefunction and Integral Handling . . . . . . . . . . . . . . . . . . . . . 299
6.6.1 Choice of Wavefunction Type . . . . . . . . . . . . . . . . . . . . . . . . . . . 299
6.6.2 UHF Natural Orbitals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 301
6.6.3 Integral Handling (Conventional, Direct, SemiDirect) . . . . . . . . . . . . . . 301
6.7 The Second Order Many Body Pertubation Theory Module (MP2) . . . . . . . . . . 304
6.7.1 Standard MP2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 304
6.7.2 RI-MP2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 305
6.7.3 ‘Double-Hybrid’ Density Functional Theory . . . . . . . . . . . . . . . . . . . 306
6.7.4 Orbital Optimized MP2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 310
6.8 The Single Reference Correlation Module . . . . . . . . . . . . . . . . . . . . . . . . 314
6.8.1 Theory . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 314
6.8.2 Closed Shell Equations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 318
6.8.3 Open Shell Equations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 320
6.8.4 Use of the MDCI Module . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 321
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module . . . . . . . . . 324
6.9.1 General Description . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 324
6.9.2 CASSCF Properties . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 339
6.9.3 Fully Variational Spin-Orbit Coupled CASSCF . . . . . . . . . . . . . . . . . 340
6.10 N-Electron Valence State Pertubation Theory . . . . . . . . . . . . . . . . . . . . . . 346
6.11 Density Matrix Renormalization Group . . . . . . . . . . . . . . . . . . . . . . . . . 352
6.11.1 Technical capabilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 353
6.11.2 How to cite . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 353
6.11.3 Overview of BLOCK input and calculations . . . . . . . . . . . . . . . . . . . 353
6.11.4 Standard commands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 354
6.11.4.1 Orbital optimization . . . . . . . . . . . . . . . . . . . . . . . . . . . 355
6.11.4.2 Advanced options . . . . . . . . . . . . . . . . . . . . . . . . . . . . 355
6.11.4.3 Troubleshooting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 357
6.11.4.4 Complete set of BLOCK options . . . . . . . . . . . . . . . . . . . . . 357
6.11.5 Appendix: Porphine π-active space calculation . . . . . . . . . . . . . . . . . 358
6.12 Relativistic Options . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 361
6.12.1 Approximate Relativistic Hamiltonians . . . . . . . . . . . . . . . . . . . . . 364
6.12.2 The Regular Approximation . . . . . . . . . . . . . . . . . . . . . . . . . . . . 365
6.12.3 The Douglas-Kroll-Hess Method . . . . . . . . . . . . . . . . . . . . . . . . . 367
6.12.4 Picture-Change Effects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 368
6.12.5 Finite Nucleus Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 369
6.12.6 Basis Sets in Relativistic Calculations . . . . . . . . . . . . . . . . . . . . . . 370
VI Contents
6.18.2 Spectral Simulation Procedures: Input Structure and Model Parameters . . . 449
6.18.2.1 Example: Simple Mode . . . . . . . . . . . . . . . . . . . . . . . . . 449
6.18.2.2 Example: Modelling of Absorption and Fluorescence Spectra within
the IMDHO Model . . . . . . . . . . . . . . . . . . . . . . . . . . . 451
6.18.2.3 Example: Modelling of Absorption and Fluorescence Spectra within
the IMDHOFA Model . . . . . . . . . . . . . . . . . . . . . . . . . . 453
6.18.2.4 Example: Modelling of Effective Broadening, Effective Stokes Shift
and Temperature Effects in Absorption and Fluorescence Spectra
within the IMDHO Model . . . . . . . . . . . . . . . . . . . . . . . 454
6.18.2.5 Example: Modelling of Absorption and Resonance Raman Spectra
for the 1-1 Ag → 1-1 Bu Transition in trans-1,3,5-Hexatriene . . . . . 457
6.18.2.6 Example: Modelling of Absorption Spectrum and Resonance Ra-
man Profiles for the 1-1 Ag → 1-1 Bu Transition in trans-1,3,5-Hexatriene461
6.18.3 Fitting of Experimental Spectra . . . . . . . . . . . . . . . . . . . . . . . . . 463
6.18.3.1 Example: Gauss-Fit of Absorption Spectrum . . . . . . . . . . . . . 463
6.18.3.2 Example: Fit of Absorption and Resonance Raman Spectra for 1-
1 A → 1-1 B Transition in trans-1,3,5-Hexatriene . . . . . . . . . . 469
g u
6.18.3.3 Example: Single-Mode Fit of Absorption and Fluorescence Spectra
for 1-1 Ag → 1-1 B2u Transition in Tetracene . . . . . . . . . . . . . . 476
6.18.4 Quantum-Chemically Assisted Simulations and Fits of Optical Bandshapes
and Resonance Raman Intensities . . . . . . . . . . . . . . . . . . . . . . . . . 480
6.18.4.1 Example: Quantum-Chemically Assisted Analysis and Fit of the
Absorption and Resonance Raman Spectra for 1-1 Ag → 1-1 Bu Tran-
sition in trans-1,3,5-Hexatriene . . . . . . . . . . . . . . . . . . . . . 481
6.18.4.2 Important Notes about Proper Comparison of Experimental and
Quantum Chemically Calculated Resonance Raman Spectra . . . . 489
6.18.4.3 Example: Normal Mode Scan Calculations of Model Parameters for
1-1 Ag → 1-1 Bu Transition in trans-1,3,5-Hexatriene . . . . . . . . . 489
6.19 The COSMO Solvation Model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 492
6.20 SMD solvent model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 495
6.20.1 Method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 495
6.20.2 How to cite . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 495
6.20.3 Input and output BLOCK . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 495
6.20.4 Solvent list . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 497
6.21 Calculation of Properties . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 498
6.21.1 Electric Properties . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 498
6.21.2 The Spin-Orbit Coupling Operator . . . . . . . . . . . . . . . . . . . . . . . . 499
6.21.3 The EPR/NMR Module . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 501
6.21.3.1 Hyperfine and Quadrupole Couplings . . . . . . . . . . . . . . . . . 503
6.21.3.2 The g-Tensor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 505
6.21.3.3 Zero-Field-Splitting . . . . . . . . . . . . . . . . . . . . . . . . . . . 506
6.21.3.4 General Treatment . . . . . . . . . . . . . . . . . . . . . . . . . . . . 507
6.22 Population Analyses and Control of Output . . . . . . . . . . . . . . . . . . . . . . . 512
6.22.1 Controlling Output . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 512
6.22.2 Mulliken Population Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 516
6.22.3 Löwdin Population Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . 518
6.22.4 Mayer Population Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . 519
6.22.5 Natural Population Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . 519
6.22.6 Density of the Effectively Unpaired Electrons . . . . . . . . . . . . . . . . . . 525
VIII Contents
Bibliography 567
IX
List of Figures
5.1 A rigid scan along the twisting coordinate of C2 H4 . The inset shows the T1 diagnostic
for the CCSD calculation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
5.2 Comparison of the CCSD(T) and MRACPF total energies of the C2 H4 along the
twisting coordinate. The inset shows the difference E(MRACPF)-E(CCSD(T)). . . . 52
5.3 Potential energy surface of the F2 molecule calculated with some single-reference
methods and compared to the MRACPF reference. . . . . . . . . . . . . . . . . . . . 53
5.4 Error in mEh for various basis sets for highly correlated calculations relative to the
ano-pVQZ basis set. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 55
5.5 Scaling behaviour of the canonical CCSD, LPNO-CCSD and DLPNO-CCSD(T)
methods. It is obvious that only DLPNO-CCSD and DLPNO-CCSD(T) can be ap-
plied to truly large molecules. The advantages of DLPNO-CCSD over LPNO-CCSD
do not show before the system has reached a size of about 60 atoms . . . . . . . . . 65
5.6 Structure of the Crambin protein - the first protein to be treated with a CCSD(T)
level ab initio method . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
5.7 Potential Energy Surface of the H2 molecule from RHF, UHF and CASSCF(2,2)
calculations (SVP basis). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 98
5.8 Potential Energy Surface of the N2 molecule from CASSCF(6,6) calculations (SVP
basis). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 99
5.9 State averaged CASSCF(2,2) calculations on H2 (two singlets, one triplet; SVP basis). 99
5.10 State averaged CASSCF(2,2) calculations on C2 H4 (two singlets, one triplet; SV(P)
basis). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101
5.11 Potential Energy Surface of the N2 molecule from CASSCF(6,6) and NEVPT2 cal-
culations (def2-SVP). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 111
5.12 Relaxed surface scan for the H-atom abstraction from CH4 by OH-radical (B3LYP/SV(P)).
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 125
5.13 Parameter scan for the quartet and sextet state of [FeO]+ (B3LYP/SV(P)). . . . . . 132
5.14 Potential energy surfaces for some low-lying states of CH using the MRCI+Q method177
5.15 Frontier MOs of the Ozone Molecule. . . . . . . . . . . . . . . . . . . . . . . . . . . . 178
5.16 2D potential energy surface for the O3 molecule calculated with different methods. . 180
5.17 Rotation of stilbene around the central double bond using a CASSCF(2,2) reference
and correlating the reference with MRMP2. . . . . . . . . . . . . . . . . . . . . . . . 181
5.18 The π and π ∗ orbitals of the CO molecule obtained from the interface of ORCA to
gOpenMol. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 185
5.19 The π and π ∗ -MOs of CO as visualized by Molekel. . . . . . . . . . . . . . . . . . . . 186
5.20 The predicted IR spectrum of the H2 CO molecule using the numerical frequency
routine of ORCA and the tool orca mapspc to create the spectrum. . . . . . . . . . 195
5.21 Calculated Raman spectrum for H2 CO at the STO-3G level using the numerical
frequency routine of ORCA and the tool orca mapspc to create the spectrum. . . . . 196
5.22 Experimental, fitted and simulated NRVS spectrum of the Fe(III)-azide complex
obtained at the BP86/TZVP level (T = 20 K). . . . . . . . . . . . . . . . . . . . . . 198
X List of Figures
5.23 Theoretical IR spectrum with the shapes of vibrations dominating the IR intensity
and NRVS scattering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 199
5.24 Nuclear vibrations for H2 CO with the shape of each vibration and its frequency
indicated . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 200
5.25 The 1395 cm−1 mode of the H2 CO molecule as obtained from the interface of ORCA
to gOpenMol and the orca pltvib tool to create the animation file. . . . . . . . . . . 201
5.26 A typical Mössbauer spectrum showing both the isomer shift, δ, and the quadrupole
splitting, ∆EQ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 217
List of Tables
3.1 Main keywords that can be used in the simple input of ORCA. . . . . . . . . . . . . 10
3.2 Density functionals available in ORCA. . . . . . . . . . . . . . . . . . . . . . . . . . 18
3.3 Keywords for automated procedures. . . . . . . . . . . . . . . . . . . . . . . . . . . . 20
3.4 Basis sets and related keywords. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20
3.5 Overview of auxiliary basis sets available in ORCA. . . . . . . . . . . . . . . . . . . 24
3.6 Overview of library keywords for ECPs and associated basis sets available in ORCA. 26
5.1 Computer times for solving the coupled cluster/coupled pair equations for Serine . . 47
5.2 Computed spectroscopic constants of N2 with coupled-cluster methods. . . . . . . . 48
5.3 Comparison of various basis sets for highly correlated calculations . . . . . . . . . . 54
5.4 Comparison of various basis sets for correlated calculations . . . . . . . . . . . . . . 55
5.9 Comparison of the performance of the MRCI and MDCI modules for a single refer-
ence calculation with the bn-ANO-DZP basis set on the zwitter-ionic form of serine. 147
The ORCA project now looks back onto a history of almost 15 years of development. Indeed, there have
been so many additions and major changes since the last released version (2.9.1), that we decided to give
the new version the label 3.0. We feel that with this release the program has reached the next level of its
development. The development team has worked very hard during the last 18 months to make this release
happen, and we are proud to pass the results of our efforts on to the fast growing ORCA user community. In
fact, the estimated number of ORCA users worldwide has now surpassed 10,000. The ORCA forum, which
was initiated two years ago, after the development team moved to the Max Planck Institute for Chemical
Energy Conversion, is highly active and we enjoy seeing so much activity from users worldwide. And of course,
we also enjoy witnessing the growing number of scientific publications that make use of ORCA. Presently an
estimated 1500 publications report results from ORCA calculations and this number is growing very quickly.
We therefore feel that one of the missions of the project, to deeply anchor the ORCA code in academic
research, has been achieved. We also look forward to welcoming many more future users.
Since its shy beginnings in 1999, the code has seen dramatic changes and improvements, as is witnessed by
about 1.5 million lines of source code. We have recently surpassed the number of 4000 submissions into our
source code repository. While it is evident that every project of this size is difficult to maintain, we put major
efforts into consolidating the code and creating an infrastructure that allows for efficient modifications and
extensions in the future. It is pleasing, in this respect, that the rules that we laid upon ourselves at the start
of the project still stand unaltered today. I am particularly grateful to the development team that the rules
are observed with a great deal of discipline. We therefore look with considerable excitement and optimism to
the further development of ORCA. Now that the code is hosted at the MPI-CEC, the environment is ideally
set up for a fruitful long-term effort.
Users of ORCA 3.0 will (hopefully) notice considerable performance improvements over previous versions.
There are several reasons for this. We are foremost indebted to our collaborator, Ed Valeev from Virginia
Tech University, for continuously improving the libint integral package that is now used by default everywhere
in ORCA. The present libint version exploits savings arising from basis set contraction. Furthermore, the
interface between libint and ORCA has been greatly streamlined, such that overhead arising from redundant
arithmetic or storage operations has been eliminated. The parallelization of ORCA is now complete and has
been continuously improved. Most noticeably, we make use of parallel linear algebra to realize significant
speedups. This is perhaps most noticeable in large-scale RI-DFT calculations that tended to be diagonlization
bound in the past. Truly giant calculations with more than 20000 basis functions are now a routine exercise.
A major new functionality in ORCA is the development of a large-scale, almost linear scaling local coupled
cluster method (DLPNO-CCSD(T)). We are very proud of this development and have managed to report
CCSD(T) level calculations on entire proteins with more than 650 atoms and almost 10000 basis functions.
The new opportunities that arise from this development are enormous. Hence, we look forward to the creative
use of this method by the ORCA community. So far, the method is limited to closed shell energies but the
XIV List of Tables
development team is working hard on extensions. Another major feature in ORCA 3.0 is the implementation
of the ROCIS/DFT method, which we consider a breakthrough technology in the calculation of transition
metal L-edge spectra. Furthermore, ORCA 3.0 features explicitly correlated MP2 and CCSD(T) methods
– implemented, again, in close collaboration with Ed Valeev. Thanks to Garnet Chan and his co-workers,
ORCA is now able to perform DMRG calculations and also to use DMRG as a substitute for configuration
interaction in the CASSCF module. Stefan Grimme and his team have made many important contributions to
the density functional capabilities of ORCA 3.0, including nonlocal, self-consistent van der Waals interactions,
counterpoise corrected minimal basis set Hartree-Fock methods and many modern density functionals, to
name only a few. Last but not least – ORCA 3.0 features analytic second derivatives for Hartree-Fock, DFT
and MP2 methods. It took us a considerable amount of time to arrive there, but the final result was well
worth the effort. The analytic Hessian module executes very efficiently and fully exploits the RI and COSX
approximations. Again, we are indebted to Ed Valeev for implementing the indispensible second derivative
two-electron integrals into libint.
We are highly grateful to all of our collaborators who have contributed their expertise and enthusiasm to the
ORCA project. In addition to the groups already mentioned, we are highly grateful to Marcel Nooijen who
spent a sabbatical with us in 2012/2013. We have greatly profited from the many discussions with him and
the outcome of our collaborative efforts will likely be seen in the forthcoming ORCA release. Likewise Jiri
Pittner and his co-workers and Nicolas Ferré have initiated coding projects within ORCA that we are excited
about and which we hope to implement in the forthcoming ORCA release.
No acknowledgement could be complete without expressing my heartfelt thanks to the in-house ORCA
development team: Frank Wennmohs, Simone Kossmann, Kantharuban Sivalingam and Ute Becker all have
invested countless hours in code debugging, streamlining, testing, improving, advising students, answering
questions in the forum, solving hardware issues ... All developers and users live off the hard work of this
team, who have paved the way for future developments and have made sure that ORCA remains in a healthy
state. We are all grateful to the Ph.D. student and postdocs in Mülheim, who have devoted their skills,
energy, enthusiasm and time (... together with a lot of coffee ;) to push the further development of ORCA.
The results of all these efforts are documented in the publications of our research group and we hope that
they will find the attention that, we feel, they deserve.
Even in version 3.0, ORCA is still a program that is free of charge for the academic user community. If you,
as an academic user, make use of ORCA and appreciate it, then PLEASE ”pay us back” by referencing the
relevant original literature from our research group. This ensures that we can document the importance of
our developments and raise the funds that we need to continue the development.
We sincerely hope that with the release of ORCA 3.0 you will be able to push your research to the next level.
We look very forward to read about your results in the literature and discuss your insights together with
other users in our forum. If you are an ambitious method developer and feel that you want to join the team,
we look forward to your application!
Frank Neese, on behalf of the ORCA development team, August 24th 2013
List of Tables XV
1 General Information
The program system ORCA consists of several separate programs that call each other during a run. The following
basic modules are included in this release:
Utility programs:
2 1 General Information
Friends of ORCA:
In principle every individual module can also be called ’standalone’. However, it is most convenient to do everything
via the main module.
There is no real installation procedure. Just copy the executables wherever you want them to be and make sure that
your path variable contains a reference to the directory where you copied the files. This is important to make sure that
the programs can call each other (but you can also tell the main program the explicit position of the other programs
in the input file as described below).
Internally the program uses atomic units. This means that the unit of energy is the Hartree (Eh ) and the unit of
length is the Bohr radius (a0 ). The following conversion factors to other units are used:
1 Eh = 27.2113834 eV
1 eV = 8065.54477 cm−1 = 23.0605 kcal
mol
1 cm−1 = 29979.2458 MHz
1 a0 = 0.5291772083 Å
1 a.t.u. = 2.4188843 10−17 s
3
Under Windows the program is called from the command prompt! (Make sure that the PATH variable is set such
that the orca executables are visible)
Under UNIX based operating systems the following call is convenient1 (here also: make sure that the PATH variable
is set to the directory where the orca executables reside):
The ’nohup’ command lets the program run even if the user is logged out. The program writes to stdout and stderr.
Therefore the output must be redirected to the file MyMol.out in this example. MyMol.inp is a free format ASCII file
that contains the input description. The program will produce a number of files MyMol.x.tmp and the file MyMol.gbw.
The ’*.gbw’ file contains a binary summary of the calculation. GBW stands for ’Geometry-Basis-Wavefunction’.
Basically this together with the calculation flags is what is stored in this file. You need this file for restarting SCF
calculations or starting other calculations with the orbitals from this calculation as input. The ’*.tmp’ files are
temporary files that contain integrals, density matrices, fock matrices etc. that are used as intermediates in the
calculation. If the program exits normally all of these files are deleted. If it happens to crash you have to remove the
files manually (rm MyMol*.tmp under Unix or del MyMol*.tmp under Windows). In case you want to monitor the
output file while it is written, you can use the command (under Unix):
tail -f MyMol.out
to follow (option -f) the progress of the calculation. Under Windows you have to either open another command shell
and use:
type MyMol.out
type MyMol.out |more
or you have to copy the output file to another file and then use any text editor to look at it.
1
Many people (including myself) will prefer to write a small shellscript that, for example, creates a run directory,
copies the input there, runs the program, deletes possibly left over temporary files and then copies the output back
to the original directory.
4 2 Calling the Program (Serial and Parallel)
you cannot use edit MyMol.out because this would result in a sharing violation.
There is a parallel version for Linux computers (thanks to the work of Ms Ute Becker) which make use of OpenMPI
(open-source MPI-2 implementation). Assuming that OpenMPI libraries are installed properly on your computer, it is
fairly easy to run the parallel version of ORCA. You simply have to give it the number of processes, like:
! PAL4
# everything from PAL2 to PAL8 is recognized
or
• SCF
• SCFGRAD
• SCFHESS
• CASSCF / NEVPT2
• CPSCF
• CIS/TDDFT
• EPRNMR
• SOC
• ROCIS
• PC
• MRCI
Thus, all major modules are parallelized in the present version. The efficiency is such that for RI-DFT perhaps up to
16 processors are a good idea while for hybrid DFT and Hartree-Fock a few more processors are appropriate. Above
this, the overhead becomes significant and the parallelization loses efficiency. Coupled cluster calculations usually scale
well up to at least 8 processors but probably it is also worthwhile to try 16. For Numerical Frequencies or Gradient
runs it makes sense to use as many processors as 3*Number of Atoms. If you run a queuing system you have to make
sure that it works together with ORCA in a reasonable way. NOTE:
2.2 Hints on the Use of Parallel ORCA 5
• Parallelization is a difficult undertaking and there are many different protocols that work differently for different
machines. Please understand that we can not provide a 1:1 support for each platform. We are trying our
best to make the parallelization transparent and provide executables for various platforms but we can not
possibly guarantee that they always work on every system. Please see the download information for details of
the version.
Many questions that are asked in the discussion forum deal with the parallel version of ORCA. Please understand
that we cannot possibly provide one-on-one support for every parallel computer in the world. So please, make every
effort to solve the problems locally together with your system administrator. Here are some of the most common
problems and how to deal with them.
1. Parallel ORCA can be used with OpenMPI only. Please see the download information for details of the relevant
OpenMPI-version for your platform.
2. The OpenMPI version is configurable in a large variety of ways, which cannot be coverd here. For a more detailed
explanation of all available options, cf. http://www.open-mpi.org
Otherwise, the usage of the OpenMPI version is like the older MPICH version, especially with regard to the provision
of a nodefile (<inputfile>.nodes). If you run the OpenMPI version on only one computer, you do not need to provide
a machinefile, and neither have to enable an rsh/ssh access, as in this case the processes will simply be forked!
Please note that the OpenMPI version is dynamically linked, that is, it needs at runtime the OpenMPI libraries (and
several other standard libraries)!
3. Many problems arise, because parallel ORCA doesn’t find its executables. To avoid this, it’s crucial to provide ORCA
with its complete pathname. The easiest and safest way to do so is to include the directory with the orca-executables
in your $PATH. Then start the calculation:
- interactively: start orca with full path: /mypath orca executables/orca MyMol.inp
- batch : export your path: export PATH=$PATH:/mypath orca executables (for bash) then start orca with full
path: $PATH/orca $jobname.inp
This seems redundant, but it really is important if you want to start a parallel calculation to run ORCA with full
path! Otherwise it will not be able to find the parallel executables.
4. It is recommended to run orca in local (not nfs-mounted) scratch-directories, (for example /tmp1, /usr/local, ...)
and to renew these directories for each run to avoid confusion with left-overs of a previous run.
- start orca
A basic example of such a submission script for the parallel ORCA version is shown below (this is for the Torque/PBS
queuing system, running on Apple Mac OS X):
#!/bin/zsh
setopt EXTENDED_GLOB
setopt NULL_GLOB
#export MKL_NUM_THREADS=1
b=${1:r}
setopt EXTENDED_GLOB
setopt NULL_GLOB
export PATH=$PBS_O_PATH
logfile=$PBS_O_WORKDIR/$b.log
tdir=$(mktemp -d /Volumes/scratch/$USER/$b__XXXXXX)
trap ’
echo "Job terminated from outer space!" >> $logfile
rm -rf $tdir
exit
’ TERM
2.2 Hints on the Use of Parallel ORCA 7
cp $PBS_O_WORKDIR/$1 $tdir
foreach f ($PBS_O_WORKDIR/*.gbw $PBS_O_WORKDIR/*.pot) cp $f $tdir
cd $tdir
cp ˆ(*.(inp|tmp*)) $PBS_O_WORKDIR/
rm -rf $tdir
EOF
- each process works on its own (private) scratch directory (the data on this directory cannot be seen from any
other process)
- all processes work in a common scratch directory (all processes can see all file-data)
- there are at least 2 groups of processes on different scratch directories, one of the groups consisting of more
than 1 process
Parallel ORCA will find out, which case exists and handle its I/O respectively. If ORCA states disk availability
differently from what you would expect, check the number of available nodes and/or the distribution pattern
(fill up/round robin)
7. If Parallel ORCA finds a file named ’MyMol.nodes’ in the directory where it’s running, it will use the nodes
listed in this file to start the processes on, provided your input file was ’MyMol.inp’. You can use this file as your
machinefile specifying your nodes, using the usual OpenMPI machinefile notation.
8. For multi-process numerical calculations (frequencies, gradient, hybrid hessian): The processes that execute these
calculations do not work in parallel, but independently, often in a totally asynchronous manner. The numerical
calculations will start as many processes, as you dedicated for the parallel parts before and they will run on the
same nodes. If your calculation runs on multiple nodes, you have to set the environment variable RSH COMMAND
to either ”rsh” or ”ssh”. You may specify special flags, like ”ssh -x”. If RSH COMMAND is not set, ORCA will
start all processes of a multi-process run on localhost. (Take care not to exceed your localhost’s ressources!) There
is no gain in taking more processes than 3-times the number of atoms to be displaced. For restart (available for
numerical frequencies, hybrid hessian and partial hessian calculations) make sure you have all local Hessian files
(input.proc%d.hess). ORCA will check these files to determine which displacements are left to be done.
8
Starting from version 2.1 revision 70 of ORCA, there are two distinct input syntaxes that can be freely mixed. This
section describes both of them. The ‘new’ syntax is provided to make things simpler and is therefore recommended.
In general, the input file is a free format ASCII file. Comments in the file start by a ’#’. For example:
In this example TolE and TolMaxP are two variables that can be user specified. The input consists of several blocks.
Blocks consist of logically related data that can be user controlled. The program tries to choose sensible default values
for all of these variables. However, it is impossible to give defaults that are equally sensible for all systems. In general
the defaults are slightly on the conservative side and more aggressive cutoffs etc. can be chosen by the user and may
help to speed things up for actual systems or give higher accuracy if desired.
In the old syntax, blocks start with the block name enclosed in ‘[ ]’ and end with an ‘[END]’. In the new syntax
blocks start with ‘%’ and end with ‘end’. For example:
No blocks need to be present in an input file but they can be present if detailed control over the programs behavior is
desired. Otherwise all normal jobs can be defined via the keywords described in the next section. Variable assignments
have the following general structure:
Some variables are actually arrays. In this case several possible assignments are useful:
Note: Arrays always start with index 0 in ORCA (this is because ORCA is a C++ program). The first line in the
example gives the value ’Value1’ to Array[1], which is the second member of this array. The second line assigns
Value1 to Array[1], Value2 to Array[2] and Value3 to Array[3]. The third line assigns Value1 to Array[0] and
Value2 to Array[1]. Strings (for examples filenames) must be enclosed in quotes. For example:
In general the input is not case sensitive. However, inside strings the input is case sensitive. This is because on unix
systems MYFILE.GBW and MyFile.gbw are different files. Under Windows the file names are not case sensitive.
In the new syntax it is possible to give a line of keywords that assign certain variables that normally belong to different
input blocks. The syntax for the ‘simple input’ is line-oriented. Simple input starts with a ‘!’ sign.
! Keywords
ATTENTION:
• Starting from version 2.5.15, the keyword line is checked for correct syntax! Keywords that
appear twice will produce an error!
• Some keywords have immediate actions that are dependent on each other. Thus, separating
keywords in several lines may have ‘bad’ effects (for example, for scalar relativistic calculations
the keywords ZORA and def2-TZVP should appear in the same line!). The ECP basis and the
canonical basis should be placed in a single line for the same reason.
Table 3.1 provides a list of keywords that can be used within the ‘simple input’ keyword line to request specific
methods and/or algorithmic options. Most of them are self-explanatory. The others are explained in detail in the
section of the manual that deals with the indicated input block. Note especially that there exist compound keywords
(see page 20), which are designed to make the input more compact.
Table 3.1: Main keywords that can be used in the simple input of ORCA.
Keyword Input block Variable Comment
HF METHOD METHOD Selects the Hartree–Fock method
DFT Selects the DFT method (see table 3.2 on
page 18 for a list of functionals)
Runtypes
3.2 Keyword Lines 11
RIJCOSX METHOD/ RI, KMatrix Sets the flag for the efficient RIJCOSX al-
SCF gorithm (treat the Coulomb term via RI
and the Exchange term via seminumerical
integration)
RI-JK METHOD/ RI, KMatrix Sets the flag for the efficient RI algorithm
SCF for Coulomb and Exchange. Works for SCF
(HF/DFT) energies (not gradients!). Works
direct or conventional.
SPLITJ SCF JMATRIX Select the efficient Split-J procedure for the
calculation of the Coulomb matrix in non-
hybrid DFT (rarely used)
SPLIT-RI-J SCF JMATRIX,RI Select the efficient Split-RI-J procedure
for the improved evaluation of the RI-
approximation to the Coulomb-matrix
NoSplit-RI-J SCF JMATRIX,RI Turns the Split-RI-J feature off (but does
not set the RI flag to false!)
RI-J-XC SCF JMATRIX, KMA- Turn on RI for the Coulomb term and the
TRIX,RI XC terms. This saves time when the XC
integration is significant but introduces an-
other basis set incompleteness error. (rarely
used)
DIRECT SCF SCFMODE Selects an integral direct calculation
SEMIDIRECT Selects an integral semidirect calculation
(rarely used nowadays)
CONV Selects an integral conventional calculation
NOITER SCF MAXITER Sets the number of SCF iterations to 0.
This works together with MOREAD and
means that the program will work with the
provided starting orbitals.
Initial guess options: In most cases the default PMODEL guess will be adequate. In some special
situations you may want to switch to a different choice
PATOM SCF GUESS Selects the polarized atoms guess
PMODEL Select the model potential guess
HUECKEL Selects the extended Hückel guess
HCORE Selects the one-electron matrix guess
MOREAD Selects input from previous MOs1
AUTOSTART AUTOSTART Try to start from the existing GBW file of
the same name as the present one
NOAUTOSTART Don’t try to do that
Relativistic options: There are several variants of scalar relativistic Hamiltonians to use in all
electron calculations
DKHn (n = 1–5) REL METHOD/ORDER Selects the scalar relativistic Douglas–Kroll–
Hess Hamiltonian of order n
ZORA REL METHOD Selects the scalar relativistic ZORA Hamil-
tonian
IORA REL METHOD Selects the scalar relativistic IORA Hamil-
tonian
ZORA/RI REL METHOD Selects the scalar relativistic ZORA Hamil-
tonian in RI approximation
3.2 Keyword Lines 15
Compression and storage. The data compression and storage options deserve some comment: in a number of
modules including RI-MP2, MDCI, CIS, (D) correction to CIS, etc. the program uses so called ‘Matrix Containers’.
This means that the data to be processed is stored in terms of matrices in files and is accessed by a double label.
A typical example is the exchange operator Kij with matrix elements K ij (a, b) = (ia|jb). Here the indices i and j
refer to occupied orbitals of the reference state and a and b are empty orbitals of the reference state. Data of this
kind may become quite large (formally N 4 scaling). To store the numbers in single precision cuts down the memory
requirements by a factor of two with (usually very) slight loss in precision. For larger systems one may also gain
advantages by also compressing the data (e.g. use a ‘packed’ storage format on disk). This option leads to additional
packing/unpacking work and adds some overhead. For small molecules UCDOUBLE is probably the best option, while
for larger molecules UCFLOAT or particularly CFLOAT may be the best choice. Compression does not necessarily
slow the calculation down for larger systems since the total I/O load may may be substantially reduced and thus
(since CPU is much faster than disk) the work of packing and unpacking takes less time than to read much larger
files (the packing may reduce disk requirements for larger systems by approximately a factor of 4 but it has not been
extensively tested so far). There are many factors contributing to the overall wall clock time in such cases including
the total system load. It may thus require some experimentation to find out with which set of options the program
runs fastest with.
18 3 General Structure of the Input File
! CAUTION !
• If you have convinced yourself that FLOAT is OK, it may save you
a factor of two in both – storage and CPU.
Global memory use. Some ORCA modules (in particular those that perform some kind of wavefunction based
correlation calculations) require large scratch arrays. Each module has an independent variable to control the size of
these dominant scratch arrays. However, since these modules are never running simultaneously, we provide a global
variable MaxCore that assigns a certain amount of scratch memory to all of these modules. Thus:
%MaxCore 4000
sets 4000 MB (= 4 GB) as the limit for these scratch arrays. This limit applies per processing core. Do not be
surprised if the program takes more than that – this size only refers to the dominant work areas. Thus, you are well
advised to provide a number that is significantly less than your physical memory. Note also that the memory use of
the SCF program cannot be controlled: it dynamically allocates all memory that it needs and if it runs out of physical
memory you are out of luck. This, however, rarely happens unless you run on a really small memory computer or you
are running a gigantic job.
For density functional calculations a number of standard functionals can be selected via the ‘simple input’ feature.
Since any of these keywords will select a DFT method, the keyword ‘DFT’ is not needed in the input. Further
functionals are available via the %method block.
There are several keywords that are designed to make your life much easier because they take multiple actions. Note
that the following keywords assume DFT; no post-HF procedures are standardized yet.
There are standard basis sets that can be specified via the ‘simple input’ feature in the keyword line. See the BASIS
input block for a full description of each basis set (section 6.3). See also the ORCA default basis sets at the end of
this section (fully described in section 6.2.2.9) that simultaneously define reasonable basis sets together with auxiliary
Coulomb fitting bases.
You can request decontraction of the basis with the keyword Decontract. This will decontract both the atomic basis
set and the auxiliary fitting basis (if it exists). Decontraction always gives more accurate results but may also lead to
much more expensive calculations since the size of the matrices to be handled becomes fairly large. Note that if your
basis set arises from general contraction it will contain duplicate primitives in several contractions and these will be
removed such that only unique primitives remain and there is no problem with redundancy.
Rappoport property-optimized Augmented def2 basis sets by diffuse functions according to Rap-
diffuse def2 basis sets poport et al. [4]
Scalar relativistic basis sets. For DKH and ZORA calculations ORCA provides relativistically recontracted
versions of the SV, TZV and QZV basis sets (and their polarized counterparts) for elements up to Xe. Note that for
other non-relativistic basis sets (for example Pople-style bases) no recontraction has been performed and consequently
such calculations are inconsistent! The standard non-relativistic Ahlrichs basis sets are automatically replaced by their
recontracted versions if both the basis set and the scalar relativistic Hamiltonian are specified in the same keyword
line, for example:
For more detailed control over basis set specification, see section 6.3. Using the same input as above, third-row
transition metals, lanthanides, actinides and 6p elements are automatically treated by our SARC (segmented all-
electron relativistically contracted) basis sets [5–9]. These were specifically developed for scalar relativistic calculations
and are individually adapted to the DKH2 and ZORA Hamiltonians.
Auxiliary basis sets. Auxiliary basis sets for the RI-J and RI-MP2 approximations can also be specified directly in
the simple input:
NOTE: Starting from version 2.6.63 ORCA can deal with two auxiliary basis sets – one for Coulomb and one for
correlation. The default is the Coulomb fitting aux-basis. If you select a separate correlation fitting basis, the
correlation modules (RI-MP2, RI-MDCI, RI-MRCI) will replace this Coulomb fitting aux-basis with the correlation
fitting basis. In order to use this feature you have to give the ‘C’-fit basis via the ‘simple input’ lines.
26 3 General Structure of the Input File
Starting from version 2.8.0, ORCA features effective core potentials (ECPs). They are a good alternative to scalar
relativistic all-electron calculations if heavy elements are involved. This pertains to geometry optimizations and energy
calculations but may not be true for property calculations.
In order to reduce the computational effort, the usually highly contracted and chemically inert core basis functions can
be eliminated by employing ECPs. ECP calculations comprise a ‘valence-only’ basis and thus are subject to the frozen
core approximation. Contributions due to the core orbitals are accounted for by an effective one-electron operator
U core which replaces the interactions between core and valence electrons and accounts for the indistinguishability of
the electrons. Its radial parts Ul (r) are generally expressed as a linear combination of Gaussian functions, while the
l
angular dependence is included through angular momentum projectors |Sm i.
L−1
X l
X
U core = UL (r) +
l l
Sm i [Ul (r) − UL (r)] hSm
l=0 m=−l
X
Ul = dkl rnkl exp(−αkl r2 )
k
atom
The maximum angular momentum L is generally defined as lmax + 1. The parameters nkl , αkl and dkl that are
necessary to evaluate the ECP integrals have been published by various authors, among them the well-known Los
Alamos (LANL) [10] and Stuttgart–Dresden (SD) [11–56] parameter sets. Depending on the specific parametrization
of the ECP, relativistic effects can be included in a semiempirical fashion in an otherwise nonrelativistic calculation.
Introducing U core into the electronic Hamiltonian yields two types of ECP integrals, the local (or type-1) integrals
that arise because of the maximum angular momentum potential UL and the semi-local (or type-2) integrals that
result from the projected potential terms. The evaluation of these integrals in ORCA proceeds according to the
scheme published by Flores-Moreno et al. [57].
A selection of ECP parameters and associated basis sets is directly accessible in ORCA through the internal ECP
library (see table 3.6 for a listing of keywords).
Table 3.6: Overview of library keywords for ECPs and associated basis sets available in ORCA.
ECP Appendant Elements Valence basis sets
keyword ECP1
Stuttgart–Dresden ECPs
available for Rb–La, Hf–Rn:
def2-SD SD(28,MWB) Rb–Cd
SD(28,MDF) In–Xe2 def2-SV(P), def2-SVP, def2-TZVP,
SD(46,MWB) Cs–La def2-TZVPP, def2-QZVP, def2-QZVPP
SD(60,MWB) Hf–Pt
SD(60,MDF) Au–Rn3 auxiliary basis sets are available and denoted as
def2-SVP/J, def2-SVP/C, def2-SVP/JK etc.
def-SD SD(28,MWB) Rb–Cd
SD(46,MWB) In–La
available for Rb–Lr:
SD(28,MWB) Ce–Lu
SD(60,MWB) Hf–Pt def-SV(P), def-SVP, def-TZVP,
SD(60,MDF) Au,3 Hg,3 Rn
def-TZVPP, def-QZVP, def-QZVPP
SD(78,MWB) Tl–At
SD(78,MDF) Fr, Ra auxiliary basis sets are available and denoted as
SD(60,MWB) Ac–Lr def-SVP/J, def-SVP/C, def-SVP/JK etc.
3.2 Keyword Lines 27
The simplest way to assign ECPs and associated valence basis sets is by using the ECP{} statement within the short
keyword line. Of the keywords listed in the first column of table 3.6, only two of them (SDD and LANL) assign at the
same time the appropriate ECP for each element as listed in the table, together with the corresponding valence basis
set (e.g. ECP{SDD}). The other four keywords (DEF2-SD, DEF-SD, LANL2 and LANL1) only select ECP parameters
but do not assign valence basis sets; these have to be specified explicitly within the ECP{} keyword following the ECP
declaration (e.g. ECP{def2-SD,def2-TZVP}). An appropriate auxiliary basis set can also be explicitly specified within
the ECP{} keyword as an additional argument (e.g. ECP{def2-SD,def2-TZVP,def2-TZVP/J}).
To facilitate the assignment of ECPs, ORCA offers convenient ways to load default combinations of high-quality
Stuttgart–Dresden ECPs and appropriate basis sets. Thus, the statement
28 3 General Structure of the Input File
! ECP{def2-TZVP} ...
assigns a def2-TZVP basis set and loads the respective “def2-SD” ECPs automatically for the elements Rb–Rn (but
omitting the lanthanides, see table 3.6 for keywords and scopes). Specifically, the command loads the SD(28,MWB)
ECPs for Rb–Cd, SD(28,MDF) for In–Xe, etc (these ECPs have been tagged as “def2-SD”). For the lanthanides and
actinides only “def” ECPs and basis sets are available at the moment.
To further ease the use of def/def2 ECPs and the respective basis sets, one can omit the def/def2 qualifier and simply
write SV(P), SVP, TZVP, TZVPP, QZVP and QZVPP within the ECP{} keyword. The program then loads def2
parameters for Rb–La and Hf–Rn, and def ECPs and basis sets for Ce–Lu and Fr–Lr.
The ECP{} keyword further allows to load ECPs and basis sets only for a small selection of elements, defined either by
a range or by a list:
# Loads def2-SD ECPs and associated def2-TZVP valence basis sets for all 5d elements.
#
! ECP{TZVP=Hf-Hg}
# Does the same only for the three elements listed within the square brackets.
#
! ECP{TZVP=[Ag,Pt,Au]}
NOTE:
• All-electron basis sets must be explicitly assigned to all atoms that are not affected by the ECP
statement! Contrary to some other program packages, all-electron basis sets e.g. on lighter
atoms are not loaded automatically!
Basis sets for light elements are specified as usual: in the following example the def2-TZVP keywords within the ECP
statement affect only Au, while the def2-TZVP keywords outside the ECP statement refer to Cl. It is important
that both the keywords appear in the same line.
* xyz -2 2
Au 0 0 0
Cl 2.5 0 0
Cl -2.5 0 0
Cl 0 2.5 0
Cl 0 -2.5 0
*
As another example, for a first-row transition metal that would not normally be affected by the ECP statement, one
may use:
3.2 Keyword Lines 29
#
# NOTE: ECP{SDD} or ECP{LANL} would assign ECPs to both Cu and Cl
#
! BP ECP{SDD=Cu,def2-TZVP/J} def2-TZVP def2-TZVP/J TightSCF
* xyz -2 2
Cu 0 0 0
Cl 2.25 0 0
Cl -2.25 0 0
Cl 0 2.25 0
Cl 0 -2.25 0
*
If ECPs are to be used for the lighter atoms as well, then the ECP{SDD} keyword can be helpful. It employs large-core
ECPs on main group elements in combination with basis sets of double zeta quality and small-core ECPs on transition
metals and f elements together with basis sets of at least triple zeta quality. This comes close to what is obtained in
a major commercial quantum chemistry program. However, in our opinion its use should be deferred in favor of the
more systematic Ahlrichs-type basis sets in conjunction with the def-/def2-SD potentials.
The library also contains the Los Alamos (LANL) ECP parameters. Small-core ECPs are only available for the
transition metals and are denoted as LANL2, while large-core potentials (LANL1) exist for Na-Bi with the exception
of the lanthanides. For the LANL potentials, three families of valence basis sets exist:
- The often used basis sets of double zeta quality [10] are denoted LANLDZ in ORCA
- LANLTZ and variants thereof are recontractions of the original Hay-Wadt primitives [58] and exist only for the
transition metals
- LANL08 and variants thereof are completely uncontracted basis sets [58] and should be preferentially used for
the main group elements
The directive ECP{LANL} automatically loads LANL2 potentials if they are present and falls back to LANL1 otherwise.
For the transition metals the LANLTZ basis sets are loaded, while the LANL08 basis sets are used for all main group
elements.
NOTE:
• In some other program packages, the LANL-type ECPs and basis sets are all prefixed with the token LANL2.
This is different in ORCA where they consistently carry the LANL prefix, whereas LANL2 explicitly references
only the small-core potentials.
For further details in advanced specification of ECPs, including assigning ECPs to individual atoms, manually entering
core potential parameters, and using ECPs as embedding potentials in cluster calculations, see sections 6.3.6 and
6.3.7.
30 3 General Structure of the Input File
For most of its life, ORCA did not take advantage of molecular symmetry. Starting from version 2.8.0 there is at least
limited use. On request, with the UseSym keyword, the program detects the point group, cleans up the coordinates,
orients the molecule and produces symmetry-adapted orbitals in SCF/CASSCF calculations. Note however that the
calculation time will not be reduced. Only D2h and subgroups are currently supported. The only correlation module
that makes use of this information so far is the MRCI module. Here and in CASSCF calculations, the use of symmetry
helps to control the calculation and the interpretation of the results. More symmetry is likely to be implemented in
the future, although it is unlikely that the program will ever take advantage of symmetry in a very big way.
If the automatic symmetry detection fails to find the expected point group, the coordinates specified are not absolutely
symmetrical to that group, and one should take a careful look at the input coordinates, maybe using a visualization
program. A problem often encountered when using coordinates generated from other jobs (e.g. geometry optimizations)
is the detection of a “too low” symmetry because of numerical noise. This can be solved by increasing the detection
threshold using an input line which looks like this:
However, it is not recommended to run calculations on a very high threshold, since this may introduce some odd
behavior. Instead, a method to symmetrize the coordinates is to do a “fake” run with NoIter, XYZFile and an
increased threshold, and then to use the created .xyz file as input for the actual calculation. This has the additional
benefit that the input coordinates stored in your data are already symmetrical. To give an example: the following
coordinates for staggered ethane were obtained by geometry optimization NOT using the symmetry module. They
are, however, not recognized as D3d symmetrical due to numerical noise and instead are found to be of Ci symmetry
(a subgroup of D3d ). To counter this, the detection threshold is increased and a symmetry perfected coordinate file is
produced by the following input:
ORCA supports input files with multiple jobs. This feature is designed to simplify series of closely related calculations
on the same molecule or calculations on different molecules. The objectives for implementing this feature include:
• Calculate of a molecular property using different theoretical methods and/or basis sets for one molecule.
3.4 Jobs with Multiple Steps 31
• Geometry optimization followed by more accurate single points and perhaps property calculations.
• Crude calculations to provide good starting orbitals that may then be used for subsequent calculations with
larger basis sets.
For example consider the following job that in the first step computes the g-tensor of BO at the LDA level, and in the
second step using the BP86 functional.
# -----------------------------------------------------
! UKS LSD SVP grid5 NoFinalGrid TightSCF KeepInts
# -----------------------------------------------------
%eprnmr gtensor 1 end
* int 0 2
B 0 0 0 0 0 0
O 1 0 0 1.2049 0 0
*
# *************************************************
# ****** This starts the input for the next job *
# *************************************************
$new_job
# --------------------------------------------------
! BP86 SVP SmallPrint ReadInts NoKeepInts
# --------------------------------------------------
%eprnmr gtensor 1 end
* int 0 2
B 0 0 0 0 0 0
O 1 0 0 1.2049 0 0
*
What happens if you use the $new job feature is that all calculation flags for the actual job are transferred from the
previous job and that only the changes in the settings must be input by the user. Thus if you turn on some flags for
one calculation that you do not want for the next, you have to turn them off again yourself (for example the use of
the RI approximation)! In addition, the default is that the new job takes the orbitals from the old job as input. If you
do not want this you have to overwrite this default by specifying your desired guess explicitly.
Normally the output files for MyJob.inp are returned in MyJob.xxx (any xxx, for example xxx=out). Sometimes, and
in particular in multistep jobs, you will want to change this behavior. To this end there is the variable ‘%base’ that
can be user controlled. All filenames (also scratch files) will then be based on this default name.
32
4 Input of Coordinates
Coordinates can either be specified directly in the input file or read from an external file. There are two ways to
specify coordinates in the input file. One of them is within the %coords block, which is organized as follows:
%coords
CTyp xyz # the type of coordinates = xyz or internal
Charge 0 # the total charge of the molecule
Mult 2 # the multiplicity = 2S+1
Units Angs # the unit of length = angs or bohrs
# the subblock coords is for the actual coordinates
# for CTyp=xyz
coords
Atom1 x1 y1 z1
Atom2 x2 y2 z2
end
# for CTyp=internal
coords
Atom1 0 0 0 0.0 0.0 0.0
Atom2 1 0 0 R1 0.0 0.0
Atom3 1 2 0 R2 A1 0.0
Atom4 1 2 3 R3 A2 D1
. . .
AtomN NA NB NC RN AN DN
end
end
The input of Cartesian coordinates in the ‘xyz’ option is straightforward. Each line consists of the label for a given
atom type and three numbers that specify the coordinates of the atom. The units can be either Ångström or Bohr
depending on the variable Units in the %coords main block. The default is to specify the coordinates in Ångströms.
Internal coordinates are specified in the form of the familiar “Z-matrix”. A Z-matrix basically contains information
about molecular connectivity, bond lengths, bond angles and dihedral angles. The program then constructs Cartesian
coordinates from this information. Both sets of coordinates are printed in the output such that conversion between
formats is facilitated. The rules for connectivity in the ‘internal’ mode (see above example) are as follows:
• NA: The atom that the actual atom has a distance (RN) with.
• NB: The actual atom has an angle (AN) with atoms NA and NB.
• NC: The actual atom has a dihedral angle (DN) with atoms NA,NB and NC. This is the angle between the actual
atom and atom NC when looking down the NA-NB axis.
33
Angles are always given in degrees! The rules are compatible with those used in the well known MOPAC and ADF
programs.
Besides the %coord block, there is a slightly simpler input syntax of the following form:
* xyz 1 2
C 0 0 0
O 0 0 1.1105
*
It is also possible to read the coordinates from a .xyz file, which can in principle contain more than one structure (see
section 5.2.9 for this multiple XYZ feature):
* xyzfile 1 2 mycoords.xyz
If multiple jobs are specified in the same input file then new jobs can read the coordinates from previous jobs. If no
filename is given as fourth argument then the name of the actual job is automatically used.
$new_job
! keywords
* xyzfile 1 2
In this way, optimization and single point jobs can be very conveniently combined in a single, simple input file.
Examples are provided in the following sections.
Special cases
• Dummy atoms are defined in exactly the same way as any other atom, by using “DA” as the atomic symbol.
• Ghost atoms are specified by adding “:” right after the symbol of the element (see 5.1.6).
• Point charges are specified with the symbol “Q”, followed by the charge (see 6.1.3).
• Embedding potentials are specified by adding a “>” right after the symbol of the element (see 6.3.7).
• Non-standard isotopes or nuclear charges are specified with the statements “M = . . . ” and “Z = . . . ”,
respectively, after the atomic coordinate definition.
• Fragments can be conveniently defined by declaring the fragment number a given atom belongs to in
parentheses “(n)” following the element symbol (see 6.1.1).
34
Before entering the detailed documentation of the various features of ORCA it is instructive to provide a chapter that
shows how ‘typical’ tasks may be performed. This should make it easier for the user to get started on the program and
not get lost in the details of how-to-do-this or how-to-do-that. We hope that the examples are reasonably intuitive.
5.1.1 Hartree-Fock
In general single point calculations are fairly easy to run. What is required is the input of a method, a basis set and a
geometry. For example, in order run a single point Hartree-Fock calculation on the CO molecule with the SVP basis
set type:
#
# My first ORCA calculation :-)
#
! HF SVP
* xyz 0 1
C 0 0 0
O 0 0 1.13
*
As an example consider this simple calculation on the cyclohexane molecule that may serve as a prototype for this
type of calculation.
There is extensive flexibility in the specification of basis sets in ORCA. First of all, you are not only restricted to the
basis sets that are built in ORCA, but can also read basis set definitions from files. In addition there is a convenient
way to change basis sets on certain types of atoms or on individual atoms. Consider the following example:
! UHF HF
%basis basis SV
newGTO Cl "DUNNING-DZP" end
end
* xyz -2 2
Cu 0 0 0 newGTO "TZVPP" end
Cl 2.25 0 0
Cl -2.25 0 0
Cl 0 2.25 0
Cl 0 -2.25 0
*
In this example the basis set is initialized as the Ahlrichs split valence basis. Then the basis set on all atoms of type
Cl is changed to DUNNING-DZP and finally the basis set for only the copper atom is changed to the more accurate
TZVPP set. In this way you could treat different atom types or even individual groups in a molecule according to
the desired accuracy. Similar functionality regarding per-element or per-atom assignments exists for effective core
potentials. More details are provided in section 6.3.
Sometimes you will like to change the ordering of the starting orbitals to obtain a different electronic state in the SCF
calculation. For example, if we take the last input and want to converge to a ligand field excited state this can be
achieved by:
! UHF HF SV
%basis newGTO Cl "Dunning-DZP" end
end
36 5 Running Typical Calculations
In the present case, MO 48 is the spin-down HOMO and MO49 the spin-down LUMO. Since we do a calculation on a
Cu(II) complex (d9 electron configuration) the beta LUMO corresponds with the ‘SOMO’. Thus, by changing the
SOMO we proceed to a different electronic state (in this case the one with the ‘hole’ in the ‘dxy ’ orbital instead of the
‘dx2 −y2 ’ orbital). The interchange of the initial guess MO’s is achieved by the command rotate {48, 49, 90, 1, 1}
end. What this does is the following: take the initial guess MOs 48 and 49 and rotate them by an angle of 90 degree
(this just interchanges them). The two last numbers mean that both orbitals are from the spin-down set. For RHF
or ROHF calculations the operator would be 0. In general you would probably first take a look at the initial guess
orbitals before changing them.
Upon request, the SCF program produces symmetry adapted orbitals. This can help to converge the SCF on specific
excited states of a given symmetry. Take for example the cation H2 O+ : We first run the simple job:
! SVP UseSym
* xyz 1 2
O 0.000000 0.000000 0.068897
H 0.000000 0.788011 -0.546765
H 0.000000 -0.788011 -0.546765
*
The program will recognize the C2v symmetry and adapt the orbitals to this:
------------------
SYMMETRY DETECTION
------------------
Preparing Data ... done
Detection Threshold: SymThresh ... 1.0000e-04
-----------------------------------------------
SYMMETRY-PERFECTED CARTESIAN COORDINATES (A.U.)
-----------------------------------------------
0 O 0.00000000 0.00000000 0.13019595
1 H 0.00000000 1.48912498 -1.03323662
2 H 0.00000000 -1.48912498 -1.03323662
------------------
SYMMETRY REDUCTION
------------------
ORCA supports only abelian point groups.
It is now checked, if the determined point group is supported:
Point Group ( C2v ) is ... supported
----------------------
ASYMMETRIC UNIT IN C2v
----------------------
# AT MASS COORDS BAS
0 O 15.9990 0.00000000 0.00000000 0.13019595 0
1 H 1.0080 0.00000000 1.48912498 -1.03323662 0
----------------------
SYMMETRY ADOPTED BASIS
----------------------
The coefficients for the symmetry adopted linear combinations (SALCS)
of basis functions will now be computed:
Number of basis functions ... 24
Preparing memory ... done
Constructing Gamma(red) ... done
Reducing Gamma(red) ... done
Constructing SALCs ... done
Checking SALC integrity ... nothing suspicious
Normalizing SALCs ... done
The initial guess in the SCF program will then recognize and freeze the occupation numbers in each irreducible
representation of the C2v point group.
38 5 Running Typical Calculations
SPIN UP ORBITALS
NO OCC E(Eh) E(eV) Irrep
0 1.0000 -21.127827 -574.9174 1-A1
1 1.0000 -1.867576 -50.8193 2-A1
2 1.0000 -1.192139 -32.4397 1-B2
3 1.0000 -1.124657 -30.6035 1-B1
4 1.0000 -1.085062 -29.5260 3-A1
5 0.0000 -0.153303 -4.1716 4-A1
6 0.0000 -0.071324 -1.9408 2-B2
...
SPIN DOWN ORBITALS
NO OCC E(Eh) E(eV) Irrep
0 1.0000 -21.081198 -573.6486 1-A1
1 1.0000 -1.710193 -46.5367 2-A1
2 1.0000 -1.152855 -31.3708 1-B2
3 1.0000 -1.032556 -28.0973 1-B1
4 0.0000 -0.306683 -8.3453 3-A1
5 0.0000 -0.139418 -3.7937 4-A1
6 0.0000 -0.062261 -1.6942 2-B2
7 0.0000 0.374727 10.1968 3-B2
...
Suppose now that we want to converge on an excited state formed by flipping the spin-beta HOMO and LUMO that
have different symmetries.
! SVP UseSym
! moread
%moinp "Test-SYM-H2O+.gbw"
%scf rotate {3,4,90,1,1}
end
end
5.1 Single Point Energies and Gradients 39
* xyz 1 2
O 0.000000 0.000000 0.068897
H 0.000000 0.788011 -0.546765
H 0.000000 -0.788011 -0.546765
*
Which is obviously an excited state of the H2 O+ molecule. In this situation (and in many others) it is an advantage
to have symmetry adapted orbitals.
5.1.2 MP2
You can do conventional or integral direct MP2 calculations for RHF, UHF or high-spin ROHF reference wavefunctions.
For RHF and UHF, the analytic gradients are available
This example also shows how to define geometry parameters and how to divide the molecule into fragments. It is of
course not necessary to do this in order to perform a MP2 calculation.
NOTE:
• There are two algorithms for MP2 calculations without the RI approximation. The first one uses main memory
as much as possible. The second one uses more disk space and is usually faster (in particular, if you run the
calculations in single precision using ! FLOAT, UCFLOAT or CFLOAT). The memory algorithm is used using
Q1Opt >0 and the disk based algorithm uses Q1Opt = -1. Gradients are only available presently for the memory
based algorithm.
The RI approximation to MP2 is fairly easy to use too. For example consider the same calculation as before:
The MP2 module can also do Grimme’s spin-component scaled MP2 [59]. This is a semi-empirical modification of
MP2 which, however, gives a fair bit better results than MP2 itself.
#
# Spin-component scaled MP2 example
#
! SCS-MP2 RHF TZV(2d,2p) TightSCF
%paras rCO = 1.20
ACOH = 120
rCH = 1.08
end
* int 0 1
C(1) 0 0 0 0.00 0.0 0.00
O(2) 1 0 0 {rCO} 0.0 0.00
H(3) 1 2 0 {rCH} {ACOH} 0.00
H(3) 1 2 3 {rCH} {ACOH} 180.00
*
5.1 Single Point Energies and Gradients 41
Energy differences with SCS-MP2 appear to be much better than from MP2 itself according to Grimme’s detailed
evaluation study.
By making the Hylleraas functional stationary with respect to the orbital rotations one obtains the orbital-optimized
MP2 method that is implemented in ORCA in combination with the RI approximation (OO-RI-MP2). One obtains
from these calculations orbitals that are adjusted to the dynamic correlation field at the level of second order many-body
perturbation theory. Also, the total energy of the OO-RI-MP2 method is lower than that of the RI-MP2 method
itself. One might think of this method as a special form of multiconfigurational SCF theory except for the fact that
the Hamiltonian is divided into a 0th order term and a perturbation.
The main benefit of the OO-RI-MP2 method is that it ‘repairs’ the poor Hartree–Fock orbitals to some extent
which should be particularly beneficial for systems which suffer from the inbalance in the Hartree-Fock treatment of
the Coulomb and the Exchange hole. Based on the experience gained so far, the OO-RI-MP2 method is no better
than RI-MP2 itself for the thermochemistry of organic molecules. However, for reactions barriers and radicals the
benefits of OO-MP2 over MP2 are substantial. This is particularly true with respect to the spin-component scaled
variant of OO-RI-MP2 that is OO-RI-SCS-MP2. Furthermore, the OO-RI-MP2 method substantially reduces the spin
contamination in UHF calculations on radicals.
Since every iteration of the OO-MP2 method is as expensive as a RI-MP2 relaxed density calculation, the computational
cost is much higher than for RI-MP2 itself. One should estimate about a factor of 10 increase in computation time
with respect to the RI-MP2 time of a normal calculation. This may still be feasible for calculations in the range of
1000–2000 basis functions (the upper limit, however, implies very significant computational costs).
A full assessment of the orbital optimized MP2 method can be found in the following paper:
The solver is a simple DIIS type scheme with additional level shifting. We have found that it is not really beneficial to
first converge the Hartree-Fock equations. Thus it is sensible to additionally use the keyword ! noiter in order to
turn off the standard Hartree-Fock SCF process before entering the orbital optimizations.
The OO-RI-MP2 method is implemented for RHF and UHF reference wavefunctions. Analytic gradients are available.
The density does not need to be requested separately in OO-RI-MP2 calculations because it is automatically calculated.
Also, there is no distinction between relaxed and unrelaxed densities because the OO-RI-MP2 energy is fully stationary
with respect to all wavefunction parameters and hence the unrelaxed and relaxed densities coincide.
42 5 Running Typical Calculations
Geometry optimization with MP2, RI-MP2, SCS-MP2 and RI-SCS-MP2 proceeds just as with any SCF method
and numerical frequencies are available in the same way too. The frozen core option is also supported for RI-MP2
gradients in both serial and parallel runs. The RIJCOSX approximation (section 5.1.4.3) is supported in RI-MP2 and
hence also double hybrid DFT gradient runs. This leads to large speedups in larger calculations, particularly if the
basis sets are accurate.
#
# MP2 optimization example
#
! RHF SCS-MP2 TZVP TZV/C TightSCF Opt NoFrozenCore
* int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.09 120.0 0.00
H 1 2 3 1.09 120.0 180.00
*
------------------------------------------------------------------------
Redundant Internal Coordinates
Just to demonstrate the accuracy of RI-MP2, here is the result with RI-SCS-MP2 instead of SCS-MP2:
------------------------------------------------------------------------
Redundant Internal Coordinates
You see that nothing is lost in the optimized geometry through the RI approximation thanks to the efficient and
accurate RI-auxiliary basis sets of the Karlsruhe group (in general the deviations in the geometries between standard
MP2 and RI-MP2 are very small). Thus, RI-MP2 really is a substantial improvement in efficiency over standard
MP2.
The use of two different fitting basis sets is strongly recommended! In RIJCOSX-MP2 gradient runs two different
grids for the seminumeric exchange integration are employed. The first grid is required for the solution of the z-vector
equations and depends on the previously defined SCF grids.
%method
Z_GridX 1 # smallest SCF grid (default)
2 # medium SCF grid
3 # largest SCF grid
end
The second grid is independent of the SCF grids and selects the integration grid to evaluate the basis function
derivatives. This grid can be chosen with ! MP2GridXn (n = 1–3), default is MP2GridX2.
For expert users, the grid parameters for the exchange grids can be even more finely controlled:
%method
IntAccX Acc1, Acc2, Acc3, Acc4
GridX Ang1, Ang2, Ang3, Acc4
XCorrection Corr1, Corr2, Corr3, Corr4
UseFinalGridX true
end
The fourth entries for IntAccX, GridX and XCorrection refer to the MP2GridX.
44 5 Running Typical Calculations
The calculation of second-order properties with the MP2, RI-MP2 and double-Hybrid DFT methods is also available
in ORCA. The most expensive term in the second derivative calculations is the 4-external contribution which can
be evaluated either via an AO direct or a semi-numerical Chain-of-Spheres approach. The KC GridX for the
semi-numerical evaluation can be chosen as follows:
Electric and magnetic second derivatives are only calculated at MP2 level, if a MP2 density has been calculated %mp2
density relaxed/unrelaxed end otherwise the SCF density is used.
In MP2 energy and gradient runs the Frozen Core (FC) approximation is applied by default. This implies that
the core electrons are not included in the perturbation treatment, since the inclusion of dynamic correlation in the
core electrons usually effects relative energies or geometry parameters insignificantly. The FC approximation can be
adjusted in the %method block.
If a MP2 calculation including all electrons is desired, the ! NoFrozenCore keyword can be simply inserted. Frozen
virtual orbitals are not allowed in gradient runs or geometry optimization!
In (RI-)MP2 gradient runs two types of MP2 densities are constructed - an ”unrelaxed” density (which basically
corresponds to the MP2 expectation value density) and a ”relaxed” density which incorporates orbital relaxation. For
both sets of densities a population analysis is printed if the SCF calculation also requested this population analysis.
These two densities are stored as JobName.pmp2ur.tmp and JobName.pmp2re.tmp respectively. The corresponding
spin densities are also constructed.
In addition to the density options, the user has the ability to construct MP2 natural orbitals. If relaxed densities are
available, the program uses the relaxed densities and otherwise the unrelaxed ones. The natural orbitals are stored as
JobName.mp2nat which is a GBW type file that can be read as input for other jobs (for example, it is sensible to start
CASSCF calculations from MP2 natural orbitals). The density construction can be controlled separately in the input
file (even without running a gradient or optimization) by:
5.1 Single Point Energies and Gradients 45
#
# MP2 densities and natural orbitals
#
%mp2 Density none # no density
unrelaxed # unrelaxed density
relaxed # relaxed density
NatOrbs true # Natural orbital construction on or off
end
NOTE
• In very large RI-MP2 runs you can cut down the amount of main memory used by a factor of two if you use the
keyword ! FLOAT. This is more important in gradient runs than in single point runs. Deviations from double
precision values for energies and gradients should be in the microhartree and sub-microhartree range. However,
we have met cases where this option introduced a large and unacceptable error, in particular in transition metal
calculations. You are therefore adviced to be careful and check things out beforehand.
ORCA features an efficient explicit correlation module that is available for MP2 and coupled-cluster calculations
(section 5.1.3.6). It is described below in the context of coupled cluster calculations
5.1.3.1 Basics
The coupled cluster method is presently available for RHF and UHF references. The implementation is fairly efficient
and suitable for large-scale calculations. The most elementary use of this module is fairly simple.
! METHOD
# where METHOD is:
# CCSD CCSD(T) QCISD QCISD(T) CPF/n NCPF/n CEPA/n NCEPA/n
# (n=1,2,3 for all variants) ACPF NACPF AQCC CISD
! AOX-METHOD
# computes contributions from integrals with 3- and 4-external
# labels directly from AO integrals that are pre-stored in a
# packed format suitable for efficient processing
! AO-METHOD
# computes contributions from integrals with 3- and 4-external
# labels directly from AO integrals. Can be done for integral
# direct and conventional runs. In particular, the conventional
# calculations can be very efficient
46 5 Running Typical Calculations
! RI-METHOD
# selects the RI approximation for all integrals. Rarely advisable
! RI34-METHOD
# selects the RI approximation for the integrals with 3- and 4-
# external labels
#
# The module has many additional options that are documented
# later in the manual.
NOTE
• The same FrozenCore options as for MP2 are applied in the MDCI module.
The computational effort for these methods is high — O(N6 ) for all methods and O(N7 ) if the triples correction is to
be computed (calculations based on an unrestricted determinant are roughly 3 times more expensive than closed shell
calculations and approximately six times more expensive if triple excitations are to be calculated). This restricts the
calculations somewhat: on presently available PCs 300–400 basis functions are feasible and if you are patient and
stretch it to the limit it may be possible to go up to 500–600; if not too many electrons are correlated may be even up
to 800–900 basis functions (then using AO-direct methods).
TIP
• For calculations on small molecules and large basis sets the MO-METHOD option is usually the most efficient;
say perhaps up to about 300 basis functions. For integral conventional runs the AO-METHOD may even more
efficient.
• For large calculations (>300 basis functions) the AO-METHOD option is a good choice. If, however, you use
very deeply contracted basis sets such as ANOs these calculations should be run in the integral conventional
mode.
• RI-METHOD is seldom the most efficient choice. If the integral transformation time is an issue than you can
select %mdci trafotype trafo ri or choose RI-METHOD and then %mdci kcopt kc ao.
To put this into perspective, consider a calculation on serine with the cc-pVDZ basis set — a basis on the lower end
of what it suitable for a highly correlated calculation. The time required to solve the equations is listed in Table 5.1.
We can draw the following conclusions:
• As long as one can store the integrals and the I/O system of the computer is not the bottleneck, the most
efficient way to do coupled-cluster type calculations is usually to go via the full transformation (it scales as
O(N5 ) whereas the later steps scale as O(N6 ) and O(N7 ) respectively).
5.1 Single Point Energies and Gradients 47
• AO-based coupled cluster calculations are not much inferior. For larger basis sets (i.e. when the ratio of
virtual to occupied orbitals is larger), the computation times will be even more favorable for the AO based
implementation. The AO direct method uses much less disk space. However, when you use a very expensive
basis set the overhead will be larger than what is observed in this example. Hence, conventionally stored
integrals — if affordable — are a good choice.
• AOX based calculations runs at essentially the same speed as AO based calculations. Since AOX based
calculations take four times as much disk space they are pretty much outdated and the AOX implementation is
only kept for historical reasons.
• RI based coupled cluster methods are significantly slower. There are some disk space savings but the
computationally dominant steps are executed less efficiently.
• CCSD is at most 10% more expensive than QCISD. With the latest AO implementation the awkward coupled
cluster terms are handled efficiently.
• CEPA is not much more than 20% faster than CCSD. In many cases CEPA results wil be better than CCSD
and then it is a real saving compared to CCSD(T), which is the most rigorous.
• If triples are included practically the same comments apply for MO versus AO based implementations as in the
case of CCSD.
ORCA is quite efficient in this type of calculation but it is also clear that the range of application of these rigorous
methods is limited. Future releases of ORCA introduce approximations to make calculations on at least medium sized
molecules feasible.
Table 5.1: Computer times (minutes) for solving the coupled cluster/coupled pair equations for Serine (cc-pVDZ basis
set)
Method SCFMode Time (min)
MO-CCSD Conv 38.2
AO-CCSD Conv 47.5
AO-CCSD Direct 50.8
AOX-CCSD Conv 48.7
RI-CCSD Conv 64.3
AO-QCISD Conv 44.8
AO-CEPA/1 Conv 40.5
MO-CCSD(T) Conv 147.0
AO-CCSD(T) Conv 156.7
All of these methods are designed to cover dynamic correlation in systems where the Hartree-Fock determinant
dominates the wavefunctions. The least attractive of these methods is CISD which is not size-consistent and therefore
practically useless. The most rigorous are CCSD(T) and QCISD(T). The former is perhaps to be preferred since
it is more stable in difficult situations.1 One can get highly accurate results from such calculations. However, one
only gets this accuracy in conjunction with large basis sets. It is perhaps not very meaningful to perform a CCSD(T)
calculation with a double-zeta basis set (see Table 5.2). The very least basis set quality required for meaningful results
would perhaps be something like def2-TZVP(-f) or preferably def2-TZVPP (cc-pVTZ, ano-pVTZ). For accurate
1
The exponential of the T1 operator serves to essentially fully relax the orbitals of the reference wavefunction. This
is not included in the QCISD model that only features at most a blinear T1T2 term in the singles residuum.
Hence, if the Hartree-Fock wavefunction is a poor starting point but static correlation is not the main problem,
CCSD is much preferred over QCISD. This is not uncommon in transition metal complexes.
48 5 Running Typical Calculations
results quadruple-zeta and even larger basis sets are required and at this stage the method is restricted to rather
small systems.
Let us look at the case of the potential energy surface of the N2 molecule. We study it with three different basis sets:
TZVP, TZVPP and QZVP. The input is the following:
For even higher accuracy we would need to introduce relativistic effects and - in particular - turn the core correlation
on. 2
One can see from Table 5.2 that for high accuracy - in particular for the vibrational frequency - one needs both - the
connected triple-excitations and large basis sets (the TZVP result is fortuitously good). While this is an isolated
example, the conclusion holds more generally. If one pushes it, CCSD(T) has an accuracy (for reasonably well-behaved
systems) of approximately 0.2 pm in distances, <10 cm−1 for harmonic frequencies and a few kcal/mol for atomization
energies.3 It is also astonishing how well the Ahlrichs basis sets do in these calculations — even slightly better than
the much more elaborate ANO bases.
NOTE:
• The quality of a given calculation is not always high because it carries the label “Coupled Cluster”. Accurate
2
Note that core correlation is not simply introduced by including the core orbitals in the correlation problem. In
addition, special correlation core-polarization functions are needed. They have been standardized for a few elements
in the cc-pCVxZ (X=D,T,Q,5,6) basis sets.
3
However, in recent years it became more evident that even CCSD(T) achieves its high apparent accuracy through
error cancellations. The full CCSDT method (triples fully included) usually performs worse than CCSD(T). The
reason is that the (T) correction undershoots the effects of the triples to some extent and thereby compensates for
the neglect of connected quadruple excitations. For very high accuracy quantum chemistry, even these must be
considered. The prospects for treating chemically more relevant molecules with such methods is not particularly
bright for the foreseeable future. . .
5.1 Single Point Energies and Gradients 49
results are only obtained in conjunction with large basis sets and for systems where the HF approximation is a
good 0th order starting point.
If one is mainly accustomed to Hartree-Fock or DFT calculations, the calculation of the density matrix is more or less
a triviality and is automatically done together with the solution of the self-consistent field equations. Unfortunately,
this is not the case in coupled cluster theory (and also not in MP2 theory). The underlying reason is that in coupled
cluster theory, the expansion of the exponential eT̂ in the expectation value
only terminates if all possible excitation levels are exhausted, i.e., if all electrons in the reference determinant Ψ0
(typically the HF determinant) are excited from the space of occupied to the space of virtual orbitals (here Dpq
denotes the first order density matrix, Epq are the spin traced second quantized orbital replacement operators, and T̂
is the cluster operator). Hence, the straightforward application of these equations is far too expensive. It is, however,
possible to expand the exponentials and only keep the linear term. This then defines a linearized density which
coincides with the density that one would calculate from linearized coupled cluster theory (CEPA/0). The difference
to the CEPA/0 density is that converged coupled cluster amplitudes are used for its evaluation. This density is
straightforward to compute and the computational effort for the evaluation is very low. Hence, this is a density that
can be easily produced in a coupled cluster run. It is not, however, what coupled cluster aficionados would accept as a
density.
The subject of a density in coupled cluster theory is approached from the viewpoint of response theory. Imagine one
adds a perturbation of the form
X
H (λ) = λ hλpq Epq
pq
to the Hamiltonian. Then it is always possible to cast the first derivative of the total energy in the form:
dE X (response) λ
= Dpq hpq
dλ pq
(response)
This is a nice result. The quantity Dpq is the so-called response density. In the case of CC theory where
the energy is not obtained by variational optimization of an energy functional, the energy has to be replaced by a
Lagrangian reading as follows:
X X X
LCC = EHF + zai Fai + 1
4
hij||abitij
ab + zµ hµ|ĤeT̂ |Ψ0 i
ai ijab µ
Here µ denotes any excited determinant (singly, doubly, triply, ....). There are two sets of Lagrange multipliers: the
quantities zai that guarantee that the perturbed wavefunction fulfills the Hartree-Fock conditions by making the
off-diagonal Fock matrix blocks zero and the quantities zµ that guarantee that the coupled-cluster projection equations
for the amplitudes are fulfilled. If both sets of conditions are fulfilled then the coupled cluster Lagrangian simply
evaluates to the coupled cluster energy. The coupled cluster Lagrangian can be made stationary with respect to the
Lagrangian multipliers zai and zµ . The response density is then defined through:
dLCC X (response) λ
= Dpq hpq
dλ pq
The density Dpq appearing in this equation does not have the same properties as the density that would arise from an
expectation value. For example, the response density can have eigenvalues lower than 0 or larger than 2. In practice,
the response density is, however, the best ’density’ there is for coupled cluster theory.
50 5 Running Typical Calculations
Unfortunately, the calculation of the coupled cluster response density is quite involved because additional sets of
equations need to be solved in order to determine the zai and zµ . If only the equations for zµ are solved one speaks of
an “unrelaxed” coupled cluster density. If both sets of equations are solved, one speaks of a “relaxed” coupled cluster
density. For most intents and purposes, the orbital relaxation effects incorporated into the relaxed density are small
for a coupled cluster density. This is so, because the coupled cluster equations contain the exponential of the single
excitation operator eT̂1 = exp( ai tia Eia ). This brings in most of the effects of orbital relaxation. In fact, replacing
P
the T̂1 operator by the operator κ̂ = ai κia (Eia − Eai ) would provide all of the orbital relaxation thus leading to
P
Not surprisingly, the equations that determine the coefficients zµ (the Z vector equations) are as complicated as
the coupled-cluster amplitude equations themselves. Hence, the calculation of the unrelaxed coupled cluster density
matrix is about twice as expensive as the calculation of the coupled cluster energy (but not quite as with proper
program organization terms can be reused and the Z vector equations are linear equations that converge somewhat
better than the non-linear amplitude equations).
ORCA features the calculation of the unrelaxed coupled cluster density on the basis of the Z vector equations for
closed- and open-shell systems. If a fully relaxed coupled cluster density is desired then ORCA still features the
orbital-optimized coupled-cluster doubles method (OOCCD). This is not exactly equivalent to the fully relaxed CCSD
density matrix because of the operator κ̂ instead of T̂1 . However, results are very close and orbital optimized coupled
cluster doubles is the method of choice if orbital relaxation effects are presumed to be large.
In terms of ORCA keywords, the coupled cluster density is obtained through the following keywords:
#
# Coupled cluster density
#
%mdci density none
linearized
unrelaxed
orbopt
end
which will work together with CCSD or QCISD (QCISD and CCSD are identical in the case of OOCCD because of
the absence of single excitations). Note, that an unrelaxed density for CCSD(T) is NOT available.
Instead of using the density option “orbopt” in the mdci-block, OOCCD can also be invoked by using the keyword:
! OOCD
Having said that, let us look at an “abuse” of the single reference correlation methods by studying (very superficially) a
system which is not well described by a single HF determinant. This already occurs for the twisting of the double-bond
of C2 H4 . At a 90◦ twist angle the system behaves like a diradical and should be described by a multireference method
(see section 5.1.7)
As can be seen in Figure 5.1, there is a steep rise in energy as one approaches a 90◦ twist angle. The HF curve is
actually discontinuous and has a cusp at 90◦ . This is immediately fixed by a simple CASSCF(2,2) calculation which
5.1 Single Point Energies and Gradients 51
Figure 5.1: A rigid scan along the twisting coordinate of C2 H4 . The inset shows the T1 diagnostic
for the CCSD calculation.
gives a smooth potential energy surface. Dynamic correlation is treated on top of the CASSCF(2,2) method with the
MRACPF approach as follows:
#
# twisting the double bond of C2H4
#
! RHF SV(P) SV/C SmallPrint NoPop MRACPF
%casscf nel 2
norb 2
mult 1
nroots 1
TrafoStep RI
switchstep nr
end
%mrci tsel 1e-10
tpre 1e-10
end
%method scanguess pmodel
end
%paras R= 1.3385
Alpha=0,180,18
end
* int 0 1
C 0 0 0 0 0 0
C 1 0 0 {R} 0 0
H 1 2 0 1.07 120 0
H 1 2 3 1.07 120 180
H 2 1 3 1.07 120 {Alpha}
52 5 Running Typical Calculations
This is the reference calculation for this problem. One can see that the RHF curve is far from the MRACPF reference
but the CASSCF calculation is very close. Thus, dynamic correlation is not important for this problem! It only
appears to be important since the RHF determinant is such a poor choice. The MP2 correlation energy is insufficient
in order to repair the RHF result. The CCSD method is better but still fall short of quantitative accuracy. Finally
,the CCSD(T) curve is very close the MRACPF. This even holds for the total energy (inset of Figure 5.2) which does
not deviate by more than 2–3 mEh from each other. Thus, in this case one uses the powerful CCSD(T) method in
an inappropriate way in order to describe a system that has multireference character. Nevertheless, the success of
CCSD(T) shows how stable this method is even in tricky situations. The “alarm” bell for CCSD and CCSD(T) is the
so-called “T1 -diagnostic”4 that is also shown in Figure 5.2. A rule of thumb says, that for a value of the diagnostic of
larger than 0.02 the results are not to be trusted. In this calculation we have not quite reached this critical point
although the T1 diagnostic blows up around 90◦ twist.
Figure 5.2: Comparison of the CCSD(T) and MRACPF total energies of the C2 H4 along the twist-
ing coordinate. The inset shows the difference E(MRACPF)-E(CCSD(T)).
The computational cost (disregarding the triples) is such that the CCSD method is the most expensive followed by
QCISD (∼10% cheaper) and all other methods (about 50% to a factor of two cheaper than CCSD). The most accurate
method is generally CCSD(T). However, this is not so clear if the triples are omitted and in this regime the coupled
pair methods (in particular CPF/1 and NCPF/15 ) can compete with CCSD.
Let us look at the same type of situation from a slightly different perspective and dissociate the single bond of F2 . As
is well known, the RHF approximation fails completely for this molecule and predicts it to be unbound. Again we use
a much too small basis set for quantitative results but it is enough to illustrate the principle.
4
It is defined as kT1 k /N 1/2 where T1 are the singles amplitudes and N the number of correlated electrons. The
original reference is [60]
5
The “N” methods have been suggested by [61] and are exclusive to ORCA. Please note that our NCPF/1 is different
from the MCPF method in the literature [62]. The original CPF method — which we prefer — is from [63]; see
also [64] for a nice review about the coupled pair approaches and the underlying philosophy.
5.1 Single Point Energies and Gradients 53
Note that we scan from outward to inward. This helps the program to find the correct potential energy surface since
at large distances the σ and σ ∗ orbitals are close in energy and fall within the desired 2 × 2 window for the CASSCF
calculation (see section 5.1.7). Comparing the MRACPF and CASSCF curves it becomes evident that the dynamic
correlation brought in by the MRACPF procedure is very important and changes the asymptote (loosely speaking the
binding energy) by almost a factor of two. Around the minimum (roughly up to 2.0 Å) the CCSD(T) and MRACPF
curves agree beautifully and are almost indistinguishable. Beyond this distance the CCSD(T) calculation begins to
diverge and shows an unphysical behavior while the multireference method is able to describe the entire PES up to the
dissociation limit. The CCSD curve is qualitatively ok but has pronounced quantitative shortcomings: it predicts a
minimum that is much too short and a dissociation energy that is much too high. Thus, already for this rather “simple”
molecule, the effect of the connected triple excitations is very important. Given this (rather unpleasant) situation, the
behavior of the much simpler CEPA method is rather satisfying since it predicts a minimum and dissociation energy
that is much closer to the reference MRACPF result than CCSD or CASSCF. It appears that in this particular case
CEPA/1 and CEPA/2 bracket the correct result.
Figure 5.3: Potential energy surface of the F2 molecule calculated with some single-reference meth-
ods and compared to the MRACPF reference.
54 5 Running Typical Calculations
As for MP2 calculations, the RI approximation can be introduced. It does not lead to spectacular performance
gains but easens the burden for the integral transformation in larger calculations. The error introduced by the
RI-approximation is usually negligible.For larger systems the AO or AOX methods are usually used.
In HF and DFT calculations the generation and digestion of the two-electron repulsion integrals is usually the most
expensive step of the entire calculation. Therefore, the most efficient approach is to use loosely contracted basis sets
with as few primitives as possible — the Ahlrichs basis sets (SVP, TZVP, TZVPP, QZVP, def2-TZVPP, def2-QZVPP)
are probably the best in this respect. Alternatively, the polarization consistent basis sets pc-1 through pc-4 could be
used, but they are only available for H-Ar. For large molecules such basis sets also lead to efficient prescreening and
consequently efficient calculations.
This situation is different in highly correlated calculations such as CCSD and CCSD(T) where the effort scales steeply
with the number of basis functions. In addition, the calculations are usually only feasible for a limited number of
basis functions and are often run in the integral conventional mode since high angular momentum basis functions
are present and these are expensive to recomputed all the time. Hence, a different strategy concerning the basis
set design seems logical. It would be good to use as few basis functions as possible but make them as accurate as
possible. This is compatible with the philosophy of atomic natural orbital (ANO) basis sets. Such basis sets are
generated from correlated atomic calculations and replicate the primitives of a given angular momentum for each
basis function. Therefore, these basis sets are deeply contracted and expensive but the natural atomic orbitals form a
beautiful basis for molecular calculations. In ORCA an accurate and systematic set of ANOs (ano-pVnZ, n = D, T,
Q, 5 is incorporated). A related strategy underlies the design of the correlation consistent basis sets (cc-pVnZ, n = D,
T, Q, 5, 6,. . . ) that are also generally contracted except for the outermost primitives of the “principal” orbitals and
the polarization functions that are left uncontracted.
Let us study this subject in some detail using the H2 CO molecule at a standard geometry and compute the SCF and
correlation energies with various basis sets. In judging the results one should view the total energy in conjunction with
the number of basis functions and the total time elapsed. Looking at the data in the Table below, it is obvious that the
by far lowest SCF energies for a given cardinal number (2 for double-zeta, 3 for triple zeta and 4 for quadruple zeta)
are provided by the ANO basis sets. Using specially optimized ANO integrals that is available since ORCA 2.7.0, the
calculations are not even much more expensive than those with standard basis sets. Obviously, the correlation energies
delievered by the ANO bases are also the best of all 12 basis sets tested. Hence, ANO basis sets are a very good
choice for highly correlated calculations. The advantages are particularly large for the early members (DZ/TZ).
Table 5.3: Comparison of various basis sets for highly correlated calculations
No. Basis
Basis set E(SCF) EC (CCSD(T)) Etot (CCSD(T)) Total Time
Fcns
cc-pVDZ 38 -113.876184 -0.34117952 -114.217364 2
cc-pVTZ 88 -113.911871 -0.42135475 -114.333226 40
cc-pVQZ 170 -113.920926 -0.44760332 -114.368529 695
def2-SVP 38 -113.778427 -0.34056109 -114.118988 2
def2- 90 -113.917271 -0.41990287 -114.337174 46
TZVPP
def2- 174 -113.922738 -0.44643753 -114.369175 730
QZVPP
pc-1 38 -113.840092 -0.33918253 -114.179274 2
pc-2 88 -113.914256 -0.41321906 -114.327475 43
pc-3 196 -113.922543 -0.44911659 -114.371660 1176
5.1 Single Point Energies and Gradients 55
Figure 5.4: Error in mEh for various basis sets for highly correlated calculations relative to the
ano-pVQZ basis set.
Let us look at one more example: the optimized structure of the N2 molecule as a function of basis set using the MP2
method (these calculations are a bit older from the time when the ano-pVnZ basis sets did not yet exist. Today, the
ano-pVnZ would be prefered):
The highest quality basis set here is QZVP and it also gives the lowest total energy. However, this basis set contains
up to g-functions and is very expensive. The Bonn-ANO-TZ3P is of the same size as TZVPP and gives the same
result as QZVP for the geometry and an energy that is intermediate between TZVPP and QZVP. To not use a
set of f-functions has still a noticeable effect on the outcome of the calculations and leads to an overestimation of
the bond distance of 0.2 pm — a small change but for benchmark calculations of this kind still significant. Among
these spd-only basis sets the Bonn-ANO-TZ2P basis set gives a better result than TZV(2d,2p) and a lower energy as
well. In fact, similarly as for the Bonn-ANO-TZ3P, the distances is as good as that from TZVPP and the energy is
intermediate between TZV(2d,2p) and TZVPP(≡TZV(2df,2pd)). The error made by the TZVP basis set that lacks
the second set of d-functions is surprisingly small even though the deletion of the second d-set “costs” more than 20
56 5 Running Typical Calculations
A significant error on the order of 1-2 pm in the calculated distances is produced by smaller DZP type basis sets which
underlines once more that such basis sets are really too small for correlated molecular calculations — the ANO-DZP
basis sets are too strongly biased towards the atom and the “usual” molecule targeted DZP basis sets like SVP have
the d-set designed to cover polarization but not correlation (the correlating d-functions are steeper than the polarizing
ones). Among the three tested basis sets the Bonn-ANO-DZP fares best in this test and cc-pVDZ fares worst. The
relatively good energy of the Bonn-ANO-DZP basis certainly comes from the good description of the atoms. The
performance of the very economical SVP basis set should be considered as very good.
Essentially the same picture is obtained by looking at the (uncorrected for ZPE) binding energy calculated at the
MP2 level – the largest basis set, QZVP gives the largest binding energy while the small basis set underestimate it.
The error of the DZP type basis sets is fairly large (≈ 2 eV) and therefore caution is advisable when using such bases.
In all cases it was found that the Bonn-ANO bases do slightly better than the segmented contracted basis sets of the
same size. This still holds for the calculated ionization potential of the nitrogen atom. In principle, this is a worst case
scenario for the ANO basis sets since they are supposedly strongly biased towards the neutral atom. Yet, The fare no
worse than the segmented contracted basis sets. Here, an error cancellation is likely: The ANO bases recover more
correlation (larger for the neutral) but are biased towards the neutral (underestimating the SCF energy for the cation).
This bias perhaps shows up most clearly for the ANO-DZP basis set which gives a calculated IP that is accidentally
almost right. The largest ANO-TZ3P even slightly overshoots relative to the QZVP basis set, which is expected.
As eluded to in the previous section, one of the biggest problems with correlation calculations is the slow convergence
to the basis set limit. One possibility to overcome this problem is the use of explicitly correlated methods. The other
possibility is to use basis set extrapolation techniques. Since this involves some fairly repetitive work, some procedures
were hardwired into the ORCA program. So far, only energies are supported. For extrapolation, a systematic series of
basis sets is required. This is, for example, provided by the cc-pVnZ, aug-cc-pVnZ or the corresponding ANO basis
sets. Here n is the ‘cardinal number’ that is 2 for the double-zeta basis sets, 3 for triple-zeta, etc.
The convergence of the HF energy to the basis set limit is assumed to be given by:
√
(X) (∞)
ESCF = ESCF + A exp −α X (5.1)
(X) (∞)
Here, ESCF is the SCF energy calculated with the basis set with cardinal number X, ESCF is the basis set limit SCF
energy and A and α are constants. The approach taken in ORCA is to do a two-point extrapolation. This means that
either A or α have to be known. Here, we take A as to be determined and α as a basis set specific constant.
(X) (Y )
(∞) X β Ecorr − Y β Ecorr
Ecorr = (5.2)
Xβ − Y β
The theoretical value for β is 3.0. However, it was found by Truhlar and confirmed by us, that for 2/3 extrapolations
β = 2.4 performs considerably better.
For a number of basis sets, we have determined the optimum values for α and β:
Since the β values for 2/3 are close to 2.4, we always take this value. Likewise, all 3/4 and higher extrapolations are
done with β = 3. However, the optimized values for α are taken throughout.
Using the keyword ! Extrapolate(X/Y,basis), where X and Y are the corresponding successive cardinal numbers
and basis is the type of basis set requested (= cc, aug-cc, ano, saug-ano, aug-ano, def2) ORCA will calculate the
SCF and optionally the MP2 or MDCI energies with two basis sets and separately extrapolate.
Let us take the example of the H2O molecule at the B3LYP/TZVP optimized geometry. The reference values have
been determined from a HF calculation with the decontracted aug-cc-pV6Z basis set and the correlation energy was
obtained from the cc-pV5Z/cc-pV6Z extrapolation. This gives:
E(SCF,CBS) = -76.066958 Eh
EC(CCSD(T),CBS) = -0.30866 Eh
Etot(CCSD(T),CBS) = -76.37561 Eh
NOTE:
• The RI-JK and RIJCOSX approximations work well together with this option and RI-MP2 is also possible.
Auxiliary basis sets are automatically chosen and can not be changed.
• All other basis set choices, externally defined bases etc. will be ignored — the automatic procedure only works
with the default basis sets!
• So far, the extrapolation is only implemented for single points and not for gradients. Hence, geometry
optimizations cannot be done in this way.
This gives:
58 5 Running Typical Calculations
Thus, the error in the total energy is indeed strongly reduced. Let us look at the more rigorous 3/4 extrapolation:
In our experience, the ANO basis sets extrapolate quite a bit better than the cc-basis sets. Hence, repeating the entire
calculation with Extrapolate(3,ANO) gives:
Which is within 1 mEh of the estimated CCSD(T) basis set limit energy in the case of the 3/4 extrapolation and
within 3 mEh for the 2/3 extrapolation.
For larger molecules, the bottleneck of the calculation will be the CCSD(T) calculation with the larger basis set. In
order to avoid this expensive (or prohibitive) calculation, it is possible to estimate the CCSD(T) energy at the basis
set limit as:
This assumes that the basis set dependence of MP2 and CCSD(T) is similar. One can then extrapolatet as before.
Alternatively, the standard way — as extensively exercised by Hobza and co-workers — is to simply use:
The estimated correlation energy is not really bad — within 2 mEh from the basis set limit. Thus, in this example
about half of the error comes from the SCF energy (not extrapolated in this scheme) and half of the error stems from
the extrapolation of the correlation energy.
Using the ExtrapolateEP2(n/m,bas) keyword one can use a generalization of the above method where instead of
MP2 any available correlation method can be used as described in Ref. [65].
Here M represents any correlation method one would like to use. For the previous water molecule the input of a
calculation that uses LPNO-CEPA/1 instead of MP2 would look like:
60 5 Running Typical Calculations
Finally it was shown [65] that instead of extrapolating the cheap method, M, using cardinal numbers X and X + 1 it
is better to use cardinal numbers X + 1 and X + 2.
A physically perhaps somewhat more satisfying alternative to basis set extrapolation is the theory of explicit correlation.
In this method terms are added to the wavefunction Ansatz that contain the interelectronic coordinates explicitly
(Hence the name ’explicit correlation”). Initially these terms were linear in the interelectronic distances (’R12-
Methods’). However, it has later been found that better results can be obtained by using other functions, such as an
exponential, of the the interelectronic distance (’F12-Method’). These methods are known to yield near basis set limit
results for correlation energies in conjunction with much smaller orbital basis sets.
• Special orbital basis sets are at least advantageous. The development of such basis sets is still in its infancy. For
a restricted range of elements the basis sets cc-pVnZ-F12 are available (where n=D,T,Q) and are recommended.
Note, that other than their names suggest, these are a fair bit larger than regular double-, triple- or quadruple
zeta basis sets
• In addition to an orbital basis set, a near-complete auxiliary basis set must be specified. This is the so-called
’CABS’ basis. For the three basis sets mentioned above these are called cc-pVnZ-F12-CABS. If you have
elements that are not covered you are on your own to supply a CABS basis set. CABS basis sets can be read
into ORCA in a way analogous to RI auxiliary basis sets (replace ’AUX’ by ’CABS’ in the input
• if the RI approximation is used in conjunction with F12, a third basis set is required - this can be the regular
auxiliary ’/C’ basis, but we recommend to step one level up in the auxiliary basis set (e.g. use a cc-pVTZ/C
fitting basis in conjunction with cc-pVDZ-F12)
• It is perfectly feasible to use RIJCOSX or RI-JK at the same time. In this case, you should provide a fourth
basis set for the Coulomb fitting
• F12 in conjunction with COSMO and DKH/ZORA can be done, but this is not well tested methodology.
Doing explicitly correlated MP2 calculations is straightforward. For example look at the following calculation on the
water molecule at a given geometry:
#
! F12-MP2 cc-pVDZ-F12 cc-pVDZ-F12-CABS VeryTightSCF PModel
* xyz 0 1
O 0.000000000000 0.000000000000 0.369372944000
62 5 Running Typical Calculations
#
! F12-RI-MP2 cc-pVDZ-F12 cc-pVDZ-F12-CABS cc-pVTZ/C VeryTightSCF PModel
* xyz 0 1
O 0.000000000000 0.000000000000 0.369372944000
H 0.783975899000 0.000000000000 -0.184686472000
H -0.783975899000 0.000000000000 -0.184686472000
*
-----------------
RI-MP2-F12 ENERGY
-----------------
It consists of several parts. The first is the regular (RI-)MP2 correlation energy in the orbitals basis followed by
the additive MP2 correction that are combined to provide a MP2 correlation energy basis set limit estimate. The
second part consists of an estimate in the error in the underlying SCF energy. This is the “(2) CABS” correction.
The combination of the SCF energy with this correction yields an estimate of the SCF basis set limit. The correction
will typically undershoot somewhat, but the error is very smooth. Finally, the corrected correlation energy and the
corrected SCF energy are added to yield the F12 total energy estimate at the basis set limit.
#
# Correlation energies of the water molecule: extrapolation versus F12
#
# cc-pVDZ MP2: -0.201 380 894
5.1 Single Point Energies and Gradients 63
# T :
-0.261 263 141
# Q :
-0.282 661 311
# T/Q :
-0.298 276 192
# Q/5 :
-0.300 598 282
# F12-DZ :
-0.295 775 804
# RI-F12-DZ :
-0.295 933 560 (cc-pVDZ/C)
# -0.295 774 489 (cc-pVTZ/C)
# F12-TZ : -0.299 164 006
# RI-F12-TZ : -0.299 163 478 (cc-pVQZ/C)
# F12-QZ : -0.300 130 086
It is obvious that extrapolated and F12 correlation energies converge to the same number (in this case around 300
mEh). The best extreapolated result is still below the F12 result (this would primarily be meaningful in a variational
calculation). However, first of all this was an expensive extrapolation and second, the small residual F12 error is
very smooth and cancels in energy differences. In any case, already the F12-double zeta (where ’double zeta’ is to be
interpreted rather loosely) brings one into within 5 mEh of the basis set limit correlation energy and the F12-triple
zeta calculation to within 1 mEh, which is impressive.
The additional effort for the F12 calculation is rather high, since five types of additional two-electron integrals need to
be calculated. Both, integrals in CABS space and in the original orbital (OBS) space must be calculated and mixed
Fock matrices are also required. Hence, one may wonder, whether a double-zeta F12 calculation actually saves any
time over, say, a quadruple-zeta regular calculation. The actual answer to this question is: ’NO’. Given all possibilities
of obtained approximate MP2 and SCF energies, we have investigated the question of how to obtain MP2 basis set
limit energies most efficiently in some detail. The results have been summarized in a paper (Liakos et al., Molec.
Phys., 2013) and show that in terms of timings basis set extrapolation in combination with RI-JK is the method of
choice in combination for MP2. However, energy differences are more reliable with F12-MP2. In combination with
RI-JK or RIJCOSX F12-MP2 becomes also competitive in terms of computational efficiency.
This situation is different in the case of coupled cluster methods, where F12 methods outperform extrapolation and
are the method of choice.
# the keywords
! F12-CCSD(T)
# and
! CCSD(T)-F12
# are equivalent
A special feature of ORCA that can use large amounts of time, is to use the RI approximation only for the F12-part.
The keyword here is:
! F12/RI-CCSD(T)
# or
! CCSD(T)-F12/RI
ORCA features a special set of local correlation methods. The prevalent local coupled cluster approaches date back
to ideas of Pulay and have been extensively developed by Werner, Sch”utz and co-workers. They use the concept
of correlation domains in order to achieve linear scaling with respect to CPU, disk and main memory. While the
central concept of electron pairs is very similar in both approaches, the local correlation methods in ORCA follow a
completely different and original philosophy.
In ORCA rather than trying to use sparsity, we exploit data compression. To this end two concepts are used: (a)
localization of internal orbitals, which reduces the number of electron pairs to be correlated since the pair correlation
energies are known to fall off sharply with distance; (b) use of a truncated pair specific natural orbital basis to span
the significant part of the virtual space for each electron pair. This guarantees the fastest convergence of the pair
wavefunction and a nearly optimal convergence of the pair correlation energy while not introducing any real space
cut-offs or geometrically defined domains. These PNOs have been used previously by the pioneers of correlation
theory. However, as discussed in the original papers, the way in which they have been implemented into ORCA is
very different.
• Neese, F.; Liakos, D.; Hansen, A. (2009) Efficient and accurate local approximations to the coupled cluster
singles and doubles method using a truncated pair natural orbital basis J. Chem. Phys., 131, 064103.
• Neese, F.; Wennmohs, F.; Hansen, A.; Grimme, S. (2009) Accurate Theoretical Chemistry with Coupled
Electron Pair Models Acc. Chem. Res., 42(5), 641-648
• Neese, F.; Wennmohs, F.; Hansen, A. (2009) Efficient and accurate local approximations to coupled electron
pair approaches. An attempt to revive the pair-natural orbital method J. Chem. Phys., 130, 114108
• Liakos, D. G.; Hansen, A.; Neese, F. (2011) Weak molecular interactions studied with parallel implementations
of the local pair natural orbital coupled pair and coupled cluster methods J. Chem. Theory Comput., 7(1),
76-87
• Hansen, A.; Liakos, D.G.; Neese, F. (2011) Efficient and accurate local single reference correlation methods for
high-spin open-shell molecules using pair natural orbitals J. Chem. Phys., 135, 214102
• Riplinger, C.; Neese, F. (2013) An efficient and near linear scaling pair natural orbital based local coupled
cluster method J. Chem. Phys., 138, 034106
• Riplinger, C.; Sandhoefer, B.; Hansen, A.; Neese, F. (2013) Natural triple excitations in local coupled cluster
calculations with pair natural orbitals J. Chem. Phys., 139, 134101
The paper from 2013 introduces the so-called DLPNO-CCSD method (’domain based local pair natural orbital
method’). This method is near linear scaling with system size and allows for giant calculations to be performed. The
principle idea behind DLPNO is the following: it became clear early on that the PNO space for a given electron pair
(ij) is local and located in the same region of space as the electron pair (ij). in LPNO-CCSD this locality was partially
used in the local fitting to the PNOs (controlled by the parameter TCutMKN). However, the PNOs were expanded in
localized, canonical virtual orbitals which led to some higher order scaling steps. In DLPNO, the PNOs are expanded
in the set of projected atomic orbitals:
X
|µ̃i = 1 − |ii hi| |µi (5.7)
i
5.1 Single Point Energies and Gradients 65
where |µi is an atomic orbital and |ii refes to an occupied molecular orbital. Such projected orbitals are an overcomplete
representation of the virtual space. The projected orbital |µ̃i is located in the same region of space as |µi and hence
can be assigned to atomic centers. This has first been invented and used by Pulay and Saebo [66] in their pioneering
work on local correlation methods and widely exploited by Werner, Schütz and co-workers in their local correlation
approaches. [67, 68] DLPNO-CCSD goes one step further in expanding the PNOs ãij of a given pair (ij) as:
X ij
ãij = dµ̃ã |µ̃i (5.8)
µ̃∈{ij}
where µ̃ ∈ {ij} is the domain of atoms (range of µ̃) that is associated with the electron pair ij. The advantage of the
PNO method is, that these domains can be chosen to be large (>15-20 atoms) without compromising the efficiency of
the method.
The comparison between LPNO-CCSD and DLPNO-CCSD is shown in Figure 5.5. It is obvious that DLPNO-CCSD
is (almost) never slower than LPNO-CCSD. However, its true advantages do become most apparent for molecules with
more than approximately 60 atoms. The triples correction, that was added with our second paper from 2013, shows a
perfect linear scaling, as is shown in Figure 5.5. For large systems it adds about 10%–20% to the DLPNO-CCSD
computation time, hence its addition is possible for all systems for which the latter can still be obtained.
Figure 5.5: Scaling behaviour of the canonical CCSD, LPNO-CCSD and DLPNO-CCSD(T) meth-
ods. It is obvious that only DLPNO-CCSD and DLPNO-CCSD(T) can be applied to
truly large molecules. The advantages of DLPNO-CCSD over LPNO-CCSD do not
show before the system has reached a size of about 60 atoms
Using the DLPNO-CCSD(T) approach it was possible for the first time (in 2013) to perform a CCSD(T) level
calculation on an entire protein (Crambin with more than 650 atoms, Figure 5.6)
66 5 Running Typical Calculations
Figure 5.6: Structure of the Crambin protein - the first protein to be treated with a CCSD(T) level
ab initio method
The use of the LPNO (and DLPNO) methods is simple and does not require special attention from the user:
* xyz 0 1
... (coordinates)
*
Using the well tested default settings, the LPNO-CEPA (LPNO-CPF, LPNO-VCEPA), LPNO-QCISD and LPNO-
5.1 Single Point Energies and Gradients 67
CCSD (LPNO-pCCSD) methods6 can be run in strict analogy to canonical calculations and should approximate the
canonical result very closely. In fact, one should not view the LPNO methods as new model chemistry - they are
designed to reproduce the canonical results, including BSSE. This is different from the domain based local correlation
methods that do constitute a new model chemistry with properties that are different from the original methods.
• The LPNO methods obligatorily make use of the RI approximation. Hence, a correlation fit set must be
provided.
• For DLPNO-CCSD and DLPNO-CCSD(T) presently only the closed-shell variants are available.
• Besides the closed-shell version which uses a RHF or RKS reference determinant there is an open-shell version
for high-spin open-shell molecules (see original paper) using an UHF or UKS reference determinant build
from quasi-restricted orbitals (QROs, see section 7.8.3). Since the results of the current open-shell version are
slightly less accurate than that of the closed-shell version it is mandatory to specify if you want to use the
closed-shell or open-shell version for calculations of closed-shell systems, i.e. always put the “RHF” (“RKS”)
or “UHF” (“UKS”) keyword in the simple keyword line. Open-shell systems can be of course only treated by
the open-shell version. Do not mix results of the closed- and open-shell version (e.g. if you calculate
reaction energies of a reaction in which both closed- and open-shell molecules take part, you should use the
open-shell version throughout).
• Parallelization is done.
• There are three thresholds that can be user controlled that can all be adjusted in the %mdci block: (a)
TCutP N O controls the number of PNOs per electron pair. This is the most critical parameter and has a default
value of 3.33e−7. (b) TCutP airs controls a perturbative selection of significant pairs and has a default value of
1e-4. (c) TCutM KN is a technical parameter and controls the size of the fit set for each electron pair. It has a
default value of 1e−3. All of these default values are conservative. Hence, no adjustment of these parameters is
necessary. All DLPNO-CCSD truncations are bound to these three truncation parameters and should not be
touched (Hence they are also not documented :-)).
• LPNO-VCEPA/n (n=1,2,3) methods are only available in the open-shell version yet.
• LPNO variants of the parameterized coupled cluster methods (pCCSD, see section 7.8.1) are also available (e.g.
LPNO-pCCSD/1a and LPNO-pC CSD/2a).
• The LPNO methods reproduce the canonical energy differences typically better than 1 kcal/mol. This accuracy
exists over large parts of the potential energy surface. Tightening TCutPairs to 1e-5 gives more accurate results
but also leads to significantly longer computation times.
• Potential energy surfaces are virtually but not perfectly smooth (like any method that involves cut-offs).
Numerical gradient calculations have been attempted and reported to have been succesful.
6
As a technical detail: The closed-shell LPNO QCISD and CCSD come in two technical variants - LPNO1-
CEPA/QCISD/CCSD and LPNO2-CEPA/CCSD/QCISD. The ’2’ variants consume less disk space but are also
slightly less accurate than the ’1’ variants. This is discussed in the original paper in the case of QCISD and CCSD.
For the sake of accuracy, the ’1’ variants are the default. In those cases, where ’1’ can still be performed, the
computational efficiency of both approaches is not grossly different. For LPNO CCSD there is also a third variant
(LPNO3-CCSD, also in the open-shell version) which avoids neglecting the dressing of the external exchange
operator. However, the results do not differ significantly from variant 1 but the calculations will become more
expensive. Thus it is not recommend to use variant 3. Variant 2 is not available in the open-shell version.
68 5 Running Typical Calculations
• The LPNO methods do work together with RIJCOSX, RI-JK and also with ANO basis sets and basis set
extrapolation. They also work for conventional integral handling.
• The methods behave excellently with large basis sets. Thus, they stay efficient even when large basis sets
are used that are necessary to obtain accurate results with wavefunction based ab initio methods. This is a
prerequisite for efficient computational chemistry applications.
• For LPNO-CCSD, calculations with about 1000 basis functions are routine, calculations with about 1500 basis
functions are possible and calculations with 2000-2500 basis functions are the limit on powerful computers. For
DLPNO-CCSD much larger calculations are possible. There is virtually no crossover and DLPNO-CCSD is
essentially always more efficient than LPNO-CCSD. Starting from about 50 atoms the differences become large.
The largest DLPNO-CCSD calculation to date featured >450 atoms and almost 8900 basis functions!
• Using large main memory is not mandatory but advantageous since it speeds up the initial integral transformation
significantly (controlled by “MaxCoreWork” and “MaxCoreIntAmp” in the %mdci block, see section 7.8.4).
• The open-shell versions are about twice as expensive as the corresponding closed-shell versions.
As an example, see the following isomerization reaction that appears to be particularly difficult for DFT:
Isomerizes to:
The results of the calculations (closed-shell versions) with the def2-TZVP basis set (about 240 basis functions) are
shown below:
The calculations are typical in the sense that: (a) the LPNO methods provide answers that are within 1 kcal/mol of
the canonical results, (b) CEPA approximates CCSD(T) more closely than CCSD. The speedups of a factor of 2-5 are
5.1 Single Point Energies and Gradients 69
moderate in this case. However, this is also a fairly small calculation. For larger systems, speedups of the LPNO
methods compared to their canonical counterparts are on the order of a factor >100-1000.
ORCA features an interface to Kallay’s powerful MRCC program. This program must be obtained separately. The
interface is restricted to single point energies but can be used for rigid scan calculations or numerical frequencies.
#
# Test the MRCC code of Mihael Kallay
#
! cc-pVDZ Conv SCFConv10 UseSym
* xyz 0 1
F 0 0 0
H 0 0 0.95
*
It is not a good idea, of course, to use this code for CCSD or CCSD(T) or CISD. Its real power lies in performing the
higher order calculations. Open shell calculations can presently not be done with the interface.
Density functional calculations are as simple to run as HF calculations. In this case you may want to adjust the
integration grid and you almost certainly will want to use the RI-J approximation in case that you have a LDA, GGA
70 5 Running Typical Calculations
or meta-GGA functional (non-hybrid functional). For hybrid functionals, the RIJCOSX and RI-JK approximations
offer large speedups.
If you want an accurate single point energy then it is wise to choose ’TightSCF’, select a basis set of at least valence
triple-zeta plus polarization quality (e.g. def2-TZVP) and also to move one step up in the DFT integration grid (i.e.
’Grid4’).
DFT calculations that do not require the HF exchange to be calculated (non-hybrid DFT) can be very efficiently
executed with the RI-J approximation. It leads to very large speedups at essentially no loss of accuracy. The use of
the RI-J approximation may be illustrated for a medium sized organic molecule - Penicillin:
* xyz 0 1
N 3.17265 1.15815 -0.09175
C 2.66167 0.72032 1.18601
C 4.31931 0.59242 -0.73003
5.1 Single Point Energies and Gradients 71
The job has 42 atoms and 430 contracted basis functions. Yet, it executes in just a few minutes elapsed time on any
reasonable personal computer.
NOTES:
72 5 Running Typical Calculations
• The RI-J approximation requires an “auxiliary basis set” in addition to a normal orbital basis set. For the
Karlsruhe basis sets and the “cc” bases there are tailored fit sets that are chosen by appending a “/J” to the
basis set name (e.g. def2-TZVP def2-TZVP/J, cc-pVDZ cc-pVDZ/J. Other choices are documented in sections
6.2.2.5 and 6.2.2.9.
• For “pure” functionals the use of RI-J is the default. Appropriate fitting bases can usually be chosen
automatically. Only if non standard basis sets are used is the explicit specification of the fitting bases strongly
recommended. For basis sets like SV(P), SVP, TZVP or TZVPP the defaults are appropriate.
Since DFT is frequently applied to open shell transition metals we also show one (more or less trivial) example of a
Cu(II) complex treated with DFT.
$new_job
Although it would not have been necessary for this example, it shows a possible strategy how to converge such
calculations. First a less accurate but fast job is performed using the RI approximation, a GGA functional and a
small basis set without polarization functions. Note that a larger damping factor has been used in order to guide the
calculation (SlowConv). The second job takes the orbitals of the first as input and performs a more accurate hybrid
DFT calculation. A subtle point in this calculation on a dianion in the gas phase is the command GuessMode CMatrix
that causes the corresponding orbital transformation to be used in order to match the orbitals of the small and the
large basis set calculation. This is always required when the orbital energies of the small basis set calculation are
positive as will be the case for anions.
5.1 Single Point Energies and Gradients 73
Frustrated by the large difference in execution times between pure and hybrid functionals, we have been motivated to
study approximations to the Hartree-Fock exchange term. The method that we have finally come up with is called
the ’chain of spheres’ COSX approximation and may be thought of as a variant of the pseudo-spectral philosophy.
Essentially, in performing two electron integrals, the first integration is done numerically on a grid and the second
(involving the Coulomb singularity) is done analytically.7 Upon combining this treatment with the Split-RI-J method
for the Coulomb term (thus, you do need a Coulomb fitting basis!), we have designed the RIJCOSX approximation
that can be used to accelerate Hartree-Fock and hybrid DFT calculations. Note that this introduces another grid on
top of the DFT integration grid which is usually significantly smaller.
In particular for large and accurate basis sets, the speedups obtained in this way are very large - we have observed
up to a factor of sixty! The procedure is essentially linear scaling such that large and accurate calculations become
possible with high efficiency. The RIJCOSX approximation is basically available throughout the program. The errors
are on the order of 1 kcal mol−1 or less in the total energies as well as in energy differences and can be made smaller
with larger than the default grids or by running the final SCF cycle without this approximation. The impact on bond
distances is a fraction of a pm, angles are better than a few tenth of a degree and soft dihedral angles are good to
about 1 degree. To the limited extent to which it has been tested, vibrational frequencies are roughly good to 2-10
wavenumbers with the default settings.
One thing to be mentioned in correlation calculations with RIJCOSX is that the requirements for the SCF and
correlation fitting bases are quite different. We therefore now support two different auxiliary basis sets in the same
run:
7
For algorithmic and theoretical details see: [69].
74 5 Running Typical Calculations
CAUTION:
An alternative algorithm for accelerating the HF exchange in hybrid DFT or HF calculations is to use the RI
approximation for both Coulomb and exchange. This is implemented in ORCA for SCF single point energies but not
for gradients.
The speedups for small molecules are better than for RIJCOSX, for medium sized molecules (e.g. (gly)4 similar and
for larger molecules RI-JK is less efficient than RIJCOSX). The errors of RI-JK are usually below 1 mEh and the
error is very smooth (smoother than for RIJCOSX). Hence, for small calculations with large basis sets, RI-JK is a
good idea, for large calculations on large molecules RIJCOSX is better.
NOTES:
• For RI-JK you will need a larger auxiliary basis set. For the Kralsruhe basis set, the def2-SVP/JK etc. basis
sets are available. They are large and accurate.
• For UHF RI-JK is roughly twice as expensive as for RHF. This is not true for RIJCOSX.
• RI-JK is available for conventional and direct runs and also for ANO bases. There the conventional mode is
recommended.
A comparison of the RIJCOSX and RI-JK methods (taken from Ref. [70]) for the (gly)2 , (gly)4 and (gly)8 is shown
below (wall clock times in second for performing the entire SCF):
It is obvious from the data that for small molecules the RI-JK approximation is the most efficient choice. For (gly)4
this is already no longer obvious. For up to the def2-TZVPP basis set, RI-JK and RIJCOSX are almost identical
and for def2-QZVPP RIJCOSX is already a factor of two faster than RI-JK. For large molecules like (gly)8 with
5.1 Single Point Energies and Gradients 75
small basis sets RI-JK is not a big improvement but for large basis set it still beats the normal 4-index calculation.
RIJCOSX on the other hand is consistently faster. It leads to speedups of around 10 for def2-TZVPP and up to 50-60
for def2-QZVPP. Here it outperforms RI-JK by, again, a factor of two.
There is a family of functionals which came up in 2006 and were proposed by Grimme [71]. They consist of a
semi-empirical mixture of DFT components and the MP2 correlation energy calculated with the DFT orbitals and
their energies. Grimme referred to his functional as B2PLYP (B88 exchange, 2 parameters that were fitted and
perturbative mixture of MP2 and LYP) – a version with improved performance (in particular for weak interactions)
is mPW2PLYP [72] and is also implemented. From the extensive calibration work, the new functionals appear to
give better energetics and a narrower error distribution than B3LYP. Thus, the additional cost of the calculation
of the MP2 energy may be well invested (and is quite limited in conjunction with density fitting in the RI part).
Martin has reported reparameterizations of B2PLYP (B2GP-PLYP, B2K-PLYP and B2T-PLYP) that are optimized
for ‘general-purpose’, ‘kinetic’ and ‘thermochemistry’ applications. A fairly new variant of these double hybrids is the
PWPB95 functional by Grimme. For more information, see the detailed input section.
In this version of ORCA, the method is available for single points, geometry optimizations [73], dipole moments and
other first order properties, as well as for numerical polarizabilities and frequencies.
It is well known that DFT does not include dispersion forces. It is possible to use a simple atom-pairwise correction
to account for the major parts of this contribution to the energy [1, 2, 74]. We have adopted the code and method
developed by Stefan Grimme in this ORCA version. The method is parameterized for many established functionals
(e.g. BLYP, BP86, PBE, TPSS, B3LYP, B2PLYP).8 The atom-pairwise dispersion correction with Becke-Johnson
damping (keyword ! D3BJ) is the default option and will automatically be invoked by the simple keyword ! D3.
8
For expert users: The keyword D2, D3ZERO and D3BJ select the empirical 2006 and the atom-pairwise 2010 model,
repsectively, with either zero-damping or Becke-Johnson damping. The default is the most accurate D3BJ model.
The outdated model from 2004 [75] is no longer supported and can only be invoked by setting DFTDOPT = 1. The
C6-scaling coefficient can be user defined using e.g. “%method DFTDScaleC6 1.2 end”
76 5 Running Typical Calculations
In this example, a BLYP calculation without dispersion correction will show a repulsive potential between the argon
atom and the methane molecule. Using the D3 dispersion correction as shown above, the potential curve shows a
minimum at about 3.1−3.2 Å. The atom-pairwise correction is quite successful and Grimme’s work suggests that this
is more generally true. For many systems like stacked DNA basepairs, hydrogen bond complexes and other weak
interactions the atom-pairwise dispersion correction will improve substantially the results of standard functionals at
essentially no extra cost.
All range-separated functionals in ORCA use the error function based approach according to Hirao and coworkers. [76]
This allows the definition of DFT functionals that dominate the short-range part by an adapted exchange functional
of LDA, GGA or meta-GGA level and the long-range part by Hartree-Fock exchange.
CAM-B3LYP, [77] LC-BLYP [78] and members of the ωB97-family of functionals have been implemented into ORCA,
namely ωB97, ωB97X [79] and ωB97X-D3. [80] Some of them incorporate fixed amounts of Hartree-Fock exchange
(EXX) and/or DFT exchange and they differ in the RS-parameter µ. In the case of ωB97X-D3, the proper D3
correction (employing the zero-damping scheme) should be calculated automatically. The user is encouraged to check
this.
Several restrictions apply to these functionals at the moment. They have only been implemented and tested for use
with the libint integral package and for RHF and UHF single-point and TDDFT calculations. Only the standard
integral handling (NORI in direct or conventional mode) and RIJONX are supported. Do not use these functionals
with any other options.
Convergence in SCF calculations is not always easy to achieve. One way to go if the calculations converges only slowly
or “creeps” towards the end of the SCF cycles such that many almost useless cycles are being performed is to switch
on a powerful but somewhat expensive convergence helper – the full Newton-Raphson method. In the neighbourhood
of a stable SCF solution this method converges quadratically which means that after 3-4 Newton-Raphson cycles the
calculations are normally converged. However, each cycle consists of microiterations which are roughly as expensive as
one SCF iteration. Thus, each SCF iteration becomes somewhat expensive but this may be more than compensated
by the reduced number of cycles.
Consider the following example of a molecule with a small HOMO–LUMO gap (≈ 1 eV):
* xyz 0 1
C -2.65720 1.06150 -0.05713
C -1.26906 0.45978 0.20734
C 2.30892 0.84241 -0.90960
5.1 Single Point Energies and Gradients 77
$new_job
! PModel RKS BP86 RI SemiDirect SV(P) DeMon/J TightSCF NRSCF
* xyz 0 1
... etc, coordinates repeated
*
Thus, the job converges almost monotonically but it does so somewhat slowly towards the end. The second job,
however:
Thus, after reaching the threshold for initiating the Newton-Raphson procedure after nine iterations, the job takes
only three more iterations to converge to the correct solution. Since each micro-iteration in the CP-SCF procedure
roughly corresponds to the formation of one Fock-matrix the second job is still somewhat more expensive. You cannot
always expect the Newton-Raphson procedure to converge9 and it will not converge at all if your SCF solution is not
stable (i.e. if the orbital Hessian has negative eigenvalues) – still, it is a powerfull technique to try if other alternatives
9
For example try %scf nr start 0.1 end end to turn on the NRSCF after two iterations in the example above –
it will run into trouble.
5.1 Single Point Energies and Gradients 79
do not do well. It is important, however, to bring the SCF into the radius of convergence of the Newton-Raphson
procedure for it to be efficient.
The implementation covers closed-shell and spin-unrestricted Hartree-Fock and DFT calculations.
In calculating weak molecular interactions the nasty subject of the basis set superposition error (BSSE) arises. It
consists of the fact that if one describes a dimer, the basis functions on A help to lower the energy of fragment B and
vice versa. Thus, one obtains an energy that is biased towards the dimer formation due to basis set effects. Since this
is unwanted, the Boys and Bernardi procedure aims to correct for this deficiency by estimating what the energies of
the monomers would be if they had been calculated with the dimer basis set. This will stabilize the monomers relative
to the dimers. The effect can be a quite sizeable fraction of the interaction energy and should therefore be taken into
account. The original Boys and Bernardi formula for the interaction energy between fragments A and B is:
h i
AB A B AB AB AB AB
∆E = EAB (AB) − EA (A) − EB (B) − EA (AB) − EA (A) + EB (AB) − EB (B) (5.9)
Y
Here EX (Z) is the energy of fragment X calculated at the optimized geometry of fragment Y with the basis set of
fragment Z. Thus, you need to do a total the following series of calculations: (1) optimize the geometry of the dimer
AB A B
and the monomers with some basis set Z. This gives you EAB (AB), EA (A) and EB (B) (2) delete fragment A (B)
from the optimized structure of the dimer and re-run the single point calculation with basis set Z. This gives you
AB AB
EB (B) and EA (A). (3) Now, the final calculation consists of calculating the energies of A and B at the dimer
AB AB
geometry but with the dimer basis set. This gives you EA (AB) and EB (AB).
In order to achieve the last step efficiently, a special notation was put into ORCA which allows you to delete the
electrons and nuclear charges that come with certain atoms but retain the assigned basis set. This trick consists of
putting a “:” after the atoms name. Here is an example of how to run such a calculation of the water dimer at the
MP2 level (with frozen core):
#
# BSSE test
#
# --------------------------------------------
# First the monomer. It is a waste of course
# to run the monomer twice ...
# --------------------------------------------
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer"
* xyz 0 1
O 7.405639 6.725069 7.710504
H 7.029206 6.234628 8.442160
H 8.247948 6.296600 7.554030
*
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer"
* xyz 0 1
O 7.405639 6.725069 7.710504
H 7.029206 6.234628 8.442160
80 5 Running Typical Calculations
# --------------------------------------------
# now the dimer
# --------------------------------------------
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "dimer"
* xyz 0 1
O 7.439917 6.726792 7.762120
O 5.752050 6.489306 5.407671
H 7.025510 6.226170 8.467436
H 8.274883 6.280259 7.609894
H 6.313507 6.644667 6.176902
H 5.522285 7.367132 5.103852
*
# --------------------------------------------
# Now the calculations of the monomer at the
# dimer geometry
# --------------------------------------------
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer_1"
* xyz 0 1
O 7.439917 6.726792 7.762120
H 7.025510 6.226170 8.467436
H 8.274883 6.280259 7.609894
*
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer_1"
* xyz 0 1
O 5.752050 6.489306 5.407671
H 6.313507 6.644667 6.176902
H 5.522285 7.367132 5.103852
*
# --------------------------------------------
# Now the calculation of the monomer at the
# dimer geometry but with the dimer basis set
# --------------------------------------------
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer_2"
* xyz 0 1
O 7.439917 6.726792 7.762120
O : 5.752050 6.489306 5.407671
H 7.025510 6.226170 8.467436
H 8.274883 6.280259 7.609894
H : 6.313507 6.644667 6.176902
H : 5.522285 7.367132 5.103852
*
5.1 Single Point Energies and Gradients 81
$new_job
! RHF MP2 TZVPP VeryTightSCF XYZFile PModel
%id "monomer_2"
* xyz 0 1
O : 7.439917 6.726792 7.762120
O 5.752050 6.489306 5.407671
H : 7.025510 6.226170 8.467436
H : 8.274883 6.280259 7.609894
H 6.313507 6.644667 6.176902
H 5.522285 7.367132 5.103852
*
Monomer : -152.647062118 Eh
Dimer : -152.655623625 Eh -5.372 kcal/mol
Monomer at dimer geometry: -152.647006948 Eh 0.035 kcal/mol
Same with AB Basis set : -152.648364970 Eh -0.818 kcal/mol
5.1.7.1 Introduction
There are several situations where a complete-active space self-consistent field (CASSCF) treatment is a good idea:
• Wavefunctions with significant multireference character arising from several nearly degenerate configurations
(static correlation)
• Wavefunctions which require a multideterminantal treatment (for example multiplets of atoms, ions, transition
metal complexes, . . . )
• Generation of orbitals which are a compromise between the requirements for several states.
• Generation of start orbitals for treatment of dynamic correlation via the MRCI module.
In all of these cases the single-determinantal Hartree-Fock method fails badly and in most of these cases DFT
methods will also fail. In these cases a CASSCF method is a good starting point. CASSCF is a special case of
multoconfigurational SCF (MCSCF) methods which specialize to the situation where the orbitals are divided into
three-subspaces: (a) the internal orbitals which are doubly occupied in all configuration state functions (CSFs), (b)
partially occupied (active) orbitals and (c) virtual (external) orbitals which are empty in all CSFs. A fixed number of
electrons is assigned to the internal subspace and the active subspace. If N-electrons are “active” in M orbitals one
speaks of a CASSCF(N,M) wavefunctions. All spin-eigenfunctions for N-electrons in M orbitals are included in the
configuration interaction step and the energy is made stationary with respect to variations in the MO and the CI
82 5 Running Typical Calculations
coefficients. Any number of roots of any number of different multiplicities can be calculated and the CASSCF energy
may be optimized with respect to a user defined average of these states.
The CASSCF method has the nice advantage that it is fully variational which renders the calculation of analytical
gradients relatively easy. Thus, the CASSCF method may be used for geometry optimizations and numerical frequency
calculations.
The price to pay for this strongly enhanced flexibility relative to the single-determinantal HF method is that the
CASSCF method requires more computational ressources and also more insight and planning from the user side. The
technical details are explained in section 6.9. Here we explain the use of the CASSCF method by examples.
Properties such as EPR parameters are available in the framework of the quasi-degenerate perturbation theory. For
a detailed description of the available properties and options see section 6.9.2. NOTE: Properties that do not
require the response of the wavefunction can be computed with the EPRNMR module as well e.g.
Mößbauer parameters
One standard example of a multireference system is the Be atom. Let us run two calculations, a standard closed shell
calculation (1s2 2s2 ). The second calculation is a CASSCF(2,4) calculation which also includes the (1s2 2s1 2p1 ) and
(1s2 2s0 2p2 ) configurations.
! TZVPP TightSCF
* xyz 0 1
Be 0 0 0
*
This standard closed shell calculations yields the energy -14.56213241 Eh. The CASSCF calculation:
! TZVPP TightSCF
%casscf nel 2
norb 4
end
* xyz 0 1
Be 0 0 0
*
yields the energy -14.605381525 Eh. Thus, the inclusion of the 2p shell results in an energy lowering of 43 mEh
which is considerable. The CASSCF program also prints the composition of the wavefunction:
---------------------------------------------
CAS-SCF STATES FOR BLOCK 1 MULT= 1 NROOTS= 1
---------------------------------------------
ROOT 0: E= -14.6053815294 Eh
0.90060 [ 0]: 2000
5.1 Single Point Energies and Gradients 83
This information is to be read as follows: The lowest state is composed of 90% of the configuration which has the
active space occupation pattern 2000 which means that the first active orbital doubly occupied in this configuration
while the other three are empty. The MO vector composition tells us what these orbitals are (ORCA uses natural
orbitals to canonicalize the active space).
0 1 2 3 4 5
-4.70502 -0.27270 0.11579 0.11579 0.11579 0.16796
2.00000 1.80121 0.06626 0.06626 0.06626 0.00000
-------- -------- -------- -------- -------- --------
0 Be s 100.0 100.0 0.0 0.0 0.0 100.0
0 Be pz 0.0 0.0 13.6 6.1 80.4 0.0
0 Be px 0.0 0.0 1.5 93.8 4.6 0.0
0 Be py 0.0 0.0 84.9 0.1 15.0 0.0
Thus, the first active space orbital has occupion number 1.80121 and is the Be-2s orbital. The other three orbitals
are 2p in character and all have the same occupation number 0.06626. Since they are degenerate in occupation
number space, they are arbitrary mixtures of the three 2p orbitals. It is then clear that the other components of the
wavefunction (each with 3.31%) are those in which one of the 2p orbitals is doubly occupied.
How did we know how to put the 2s and 2p orbitals in the active space? The answer is – WE DID NOT KNOW!
In this case it was “good luck” that the initial guess produced the orbitals in such an order that we had the 2s
and 2p orbitals active. IN GENERAL IT IS YOUR RESPONSIBILITY THAT THE ORBITALS ARE
ORDERED SUCH THAT THE ORBITALS THAT YOU WANT IN THE ACTIVE SPACE COME
IN THE DESIRED ORDER. In many cases this will require re-ordering and CAREFUL INSPECTION of
the starting orbitals.
ATTENTION:
• If you include orbitals in the active space that are nearly empty or nearly doubly occupied, convegence problems
are likely (in many cases these are overcome by the Newton-Raphson method).
TIP
• In many cases natural orbitals of a simple correlated calculation of some kind provide a good starting point for
CASSCF.
Let us illustrate this principle with a calculation on the Benzene molecule where we want to include all six π-orbitals
in the active space. After doing a RHF calculation:
84 5 Running Typical Calculations
! RHF SV(P)
* int 0 1
C 0 0 0 0.000000 0.000 0.000
C 1 0 0 1.389437 0.000 0.000
C 2 1 0 1.389437 120.000 0.000
C 3 2 1 1.389437 120.000 0.000
C 4 3 2 1.389437 120.000 0.000
C 5 4 3 1.389437 120.000 0.000
H 1 2 3 1.082921 120.000 180.000
H 2 1 3 1.082921 120.000 180.000
H 3 2 1 1.082921 120.000 180.000
H 4 3 2 1.082921 120.000 180.000
H 5 4 3 1.082921 120.000 180.000
H 6 5 4 1.082921 120.000 180.000
*
%Output
Print[P_ReducedOrbPopMO_L] 1
End
12 13 14 15 16 17
-0.63810 -0.62613 -0.59153 -0.59153 -0.50570 -0.49833
2.00000 2.00000 2.00000 2.00000 2.00000 2.00000
-------- -------- -------- -------- -------- --------
0 C s 2.9 0.0 0.3 0.1 0.0 0.0
0 C pz 0.0 0.0 0.0 0.0 16.5 0.0
0 C px 1.4 12.4 5.9 0.3 0.0 11.2
0 C py 4.2 4.1 10.1 5.9 0.0 0.1
0 C dyz 0.0 0.0 0.0 0.0 0.1 0.0
0 C dx2y2 0.1 0.1 0.2 0.2 0.0 0.5
0 C dxy 0.4 0.0 0.0 0.2 0.0 0.0
1 C s 2.9 0.0 0.3 0.1 0.0 0.0
1 C pz 0.0 0.0 0.0 0.0 16.5 0.0
1 C px 1.4 12.4 5.9 0.3 0.0 11.2
1 C py 4.2 4.1 10.1 5.9 0.0 0.1
1 C dyz 0.0 0.0 0.0 0.0 0.1 0.0
1 C dx2y2 0.1 0.1 0.2 0.2 0.0 0.5
1 C dxy 0.4 0.0 0.0 0.2 0.0 0.0
2 C s 2.9 0.0 0.0 0.4 0.0 0.1
2 C pz 0.0 0.0 0.0 0.0 16.5 0.0
2 C px 5.7 0.0 0.0 20.9 0.0 10.1
2 C py 0.0 16.5 1.3 0.0 0.0 0.0
2 C dxz 0.0 0.0 0.0 0.0 0.1 0.0
2 C dx2y2 0.6 0.0 0.0 0.2 0.0 1.2
2 C dxy 0.0 0.1 0.5 0.0 0.0 0.0
3 C s 2.9 0.0 0.3 0.1 0.0 0.0
3 C pz 0.0 0.0 0.0 0.0 16.5 0.0
5.1 Single Point Energies and Gradients 85
18 19 20 21 22 23
-0.49833 -0.33937 -0.33937 0.13472 0.13472 0.18198
2.00000 2.00000 2.00000 0.00000 0.00000 0.00000
-------- -------- -------- -------- -------- --------
0 C s 0.1 0.0 0.0 0.0 0.0 2.2
0 C pz 0.0 8.1 24.4 7.8 23.4 0.0
0 C px 0.1 0.0 0.0 0.0 0.0 0.6
0 C py 10.4 0.0 0.0 0.0 0.0 1.7
0 C dxz 0.0 0.4 0.2 0.7 0.7 0.0
0 C dyz 0.0 0.2 0.0 0.7 0.0 0.0
0 C dx2y2 0.0 0.0 0.0 0.0 0.0 0.2
0 C dxy 1.0 0.0 0.0 0.0 0.0 0.5
1 C s 0.1 0.0 0.0 0.0 0.0 2.2
1 C pz 0.0 8.1 24.4 7.8 23.4 0.0
1 C px 0.1 0.0 0.0 0.0 0.0 0.6
1 C py 10.4 0.0 0.0 0.0 0.0 1.7
1 C dxz 0.0 0.4 0.2 0.7 0.7 0.0
1 C dyz 0.0 0.2 0.0 0.7 0.0 0.0
1 C dx2y2 0.0 0.0 0.0 0.0 0.0 0.2
1 C dxy 1.0 0.0 0.0 0.0 0.0 0.5
2 C s 0.0 0.0 0.0 0.0 0.0 2.2
2 C pz 0.0 32.5 0.0 31.2 0.0 0.0
2 C px 0.0 0.0 0.0 0.0 0.0 2.2
2 C py 11.6 0.0 0.0 0.0 0.0 0.0
2 C dxz 0.0 0.1 0.0 0.3 0.0 0.0
2 C dyz 0.0 0.0 0.8 0.0 1.8 0.0
2 C dx2y2 0.0 0.0 0.0 0.0 0.0 0.7
2 C dxy 0.4 0.0 0.0 0.0 0.0 0.0
3 C s 0.1 0.0 0.0 0.0 0.0 2.2
3 C pz 0.0 8.1 24.4 7.8 23.4 0.0
86 5 Running Typical Calculations
We see that the occupied π-orbitals number 16,19,20 and the unoccupied ones start with 21 and 22. However, the
six’th high-lying π ∗ -orbital cannot easily be found. Thus, let us run a simple selected CEPA/2 calculation and look at
the natural orbitals.
N[ 6] = 1.98784765
N[ 7] = 1.98513069
N[ 8] = 1.98508633
N[ 9] = 1.97963799
N[ 10] = 1.97957039
N[ 11] = 1.97737886
N[ 12] = 1.97509724
N[ 13] = 1.97370616
N[ 14] = 1.97360821
N[ 15] = 1.96960145
N[ 16] = 1.96958645
N[ 17] = 1.96958581
N[ 18] = 1.95478929
N[ 19] = 1.91751184
N[ 20] = 1.91747498
N[ 21] = 0.07186879
N[ 22] = 0.07181758
N[ 23] = 0.03203528
N[ 24] = 0.01766832
N[ 25] = 0.01757735
N[ 26] = 0.01708578
N[ 27] = 0.01707675
N[ 28] = 0.01671912
N[ 29] = 0.01526139
N[ 30] = 0.01424982
From these occupation number it becomes evident that there are several natural orbitals which are not quite doubly
occupied MOs. Those with an occupation number of 1.95 and less should certainly be taken as active. In addition the
rather strongly occupied virtual MOs 21-23 should also be active leading to CASSCF(6,6). Let us see what these
orbitals are before starting CASSCF:
Leading to:
18 19 20 21 22 23
1.00000 1.00000 1.00000 1.00000 1.00000 1.00000
1.95479 1.91751 1.91747 0.07187 0.07182 0.03204
-------- -------- -------- -------- -------- --------
0 C pz 16.5 8.1 24.4 23.4 7.8 16.1
0 C dxz 0.0 0.4 0.2 0.6 0.9 0.1
0 C dyz 0.1 0.2 0.0 0.0 0.6 0.4
1 C pz 16.5 8.1 24.4 23.5 7.8 16.1
88 5 Running Typical Calculations
This shows us that these six orbitals are precisely the π/π ∗ orbitals that we wanted to have active (you can also plot
them to get even more insight).
Now we know that the desired orbitals are in the correct order, we can do CASSCF:
! RHF SV(P)
! moread
%moinp "Test-CASSCF-Benzene-2.mrci.nat"
%casscf nel 6
norb 6
nroots 1
mult 1
switchstep nr
end
Here we have also used a special feature of the CASSCF program – the second order convergence provided by the
Newton-Raphson method after a certain convergence has been reached (the switchstep nr statement). The output
of the CASSCF program is:
------------------
CAS-SCF ITERATIONS
------------------
MACRO-ITERATION 1:
--- Canonicalize Internal Space
--- Canonicalize External Space
--- Inactive Energy E0 = -224.09726145 Eh
CI-ITERATION 0:
-230.588262104 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
5.1 Single Point Energies and Gradients 89
MACRO-ITERATION 2:
--- Canonicalize Internal Space
--- Canonicalize External Space
--- Inactive Energy E0 = -224.09482620 Eh
CI-ITERATION 0:
-230.589517156 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
E(CAS)= -230.589517156 Eh DE= -0.001255051
N(occ)= 1.96277 1.90651 1.90639 0.09498 0.09490 0.03445
||g|| = 0.060116073 Max(G)= 0.028742952 Rot=45,20
--- Orbital Update [ SuperCI]
SUPERCI-ITER 0: DE= -0.000434389 <r|r>= 0.000000001
<Psi(SX)|Psi(SX)>= 1.000000014 DE(SX)=-0.000434389
Largest coefficient in the normalized |SX> wavefunction= 0.007779462
--- Forming Natural Orbitals
--- Density close to convergence (3.348e-03). Approximate active Fock build
MACRO-ITERATION 3:
--- Canonicalize Internal Space
--- Canonicalize External Space
--- Inactive Energy E0 = -224.08994424 Eh
CI-ITERATION 0:
-230.589969060 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
E(CAS)= -230.589969060 Eh DE= -0.000451905
N(occ)= 1.96215 1.90471 1.90465 0.09670 0.09666 0.03513
||g|| = 0.035627381 Max(G)= 0.016592318 Rot=44,19
--- Orbital Update [ SuperCI]
90 5 Running Typical Calculations
MACRO-ITERATION 4:
--- Canonicalize Internal Space
--- Canonicalize External Space
--- Inactive Energy E0 = -224.08604939 Eh
CI-ITERATION 0:
-230.590144691 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
E(CAS)= -230.590144691 Eh DE= -0.000175631
N(occ)= 1.96181 1.90376 1.90373 0.09761 0.09759 0.03551
||g|| = 0.021716727 Max(G)= -0.009927233 Rot=44,19
===>>> Convergence to 3.0e-02 achieved - switching to Step=NR
--- Orbital Update [ NR]
--- S-Fitting active orbitals
--- Density close to convergence (9.630e-04). Approximate active Fock build
MACRO-ITERATION 5:
--- Inactive Energy E0 = -224.07780923 Eh
CI-ITERATION 0:
-230.590271361 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
E(CAS)= -230.590271361 Eh DE= -0.000126670
N(occ)= 1.96137 1.90273 1.90273 0.09861 0.09860 0.03596
||g|| = 0.000734961 Max(G)= -0.000332998 Rot=44,19
---- THE CAS-SCF GRADIENT HAS CONVERGED ----
--- FINALIZING ORBITALS ---
---- DOING ONE FINAL ITERATION FOR PRINTING ----
--- Forming Natural Orbitals
--- Canonicalize Internal Space
--- Canonicalize External Space
MACRO-ITERATION 6:
--- Inactive Energy E0 = -224.07780923 Eh
CI-ITERATION 0:
-230.590271360 0.000000000000 ( 0.01)
CI-PROBLEM SOLVED
DENSITIES MADE
E(CAS)= -230.590271360 Eh DE= 0.000000001
N(occ)= 1.96137 1.90273 1.90273 0.09861 0.09860 0.03596
||g|| = 0.000798884 Max(G)= 0.000333015 Rot=44,19
--------------
CASSCF RESULTS
--------------
First of all you can see how the program cycles between CI-vector optimization and orbital optimization steps (so-called
unfolded two-step procedure). After 4 iterations, the program switches to the Newton-Raphson solver which then
converges very rapidly. In the CASSCF program this produces lengthy integrals and Hessian files and therefore the
5.1 Single Point Energies and Gradients 91
The CASSCF program can make some use of symmetry. Thus, it is possible to do the CI calculations separated by
irreducible representations. This allows one to calculate electronic states in a more controlled fashion.
Let us look at a simple example: C2 H4 . We first generate symmetry adapated MP2 natural orbitals:
The program does the following. It first identifies the group correctly as D2h and sets up its irreducible representa-
tions:
------------------
SYMMETRY DETECTION
------------------
Preparing Data ... done
Detection Threshold: SymThresh ... 1.0000e-04
-----------------------------------------------
SYMMETRY-PERFECTED CARTESIAN COORDINATES (A.U.)
-----------------------------------------------
92 5 Running Typical Calculations
------------------
SYMMETRY REDUCTION
------------------
ORCA supports only abelian point groups.
It is now checked, if the determined point group is supported:
Point Group ( D2h ) is ... supported
----------------------
ASYMMETRIC UNIT IN D2h
----------------------
# AT MASS COORDS (A.U.) BAS
0 C 12.0110 1.27556514 0.00000000 0.00000000 0
2 H 1.0080 2.31491451 1.80020592 0.00000000 0
----------------------
SYMMETRY ADOPTED BASIS
----------------------
The coefficients for the symmetry adopted linear combinations (SALCS)
of basis functions will now be computed:
Number of basis functions ... 86
Preparing memory ... done
Constructing Gamma(red) ... done
Reducing Gamma(red) ... done
Constructing SALCs ... done
Checking SALC integrity ... nothing suspicious
Normalizing SALCs ... done
It then performs the SCF calculation and keeps the symmetry in the molecular orbitals.
The MP2 module does not take any advantage of this information but produces natural orbitals that are symmetry
adapted:
N[ 0](B3u) = 2.00000360
N[ 1]( Ag) = 2.00000219
N[ 2]( Ag) = 1.98056435
N[ 3](B3u) = 1.97195041
N[ 4](B2u) = 1.96746753
N[ 5](B1g) = 1.96578954
N[ 6]( Ag) = 1.95864726
N[ 7](B1u) = 1.93107098
N[ 8](B2g) = 0.04702701
N[ 9](B3u) = 0.02071784
N[ 10](B2u) = 0.01727252
N[ 11]( Ag) = 0.01651489
N[ 12](B1g) = 0.01602695
N[ 13](B3u) = 0.01443373
N[ 14](B1u) = 0.01164204
N[ 15]( Ag) = 0.01008617
N[ 16](B2u) = 0.00999302
N[ 17]( Ag) = 0.00840326
N[ 18](B3g) = 0.00795053
N[ 19](B3u) = 0.00532044
N[ 20]( Au) = 0.00450556
etc.
From this information and visual inspection you will know what orbitals you will have in the active space:
These natural orbitals can then be fed into the CASSCF calculation. We perform a simple calculation in which we
keep the ground state singlet (A1g symmetry, irrep=0) and the first excited triplet state (B3u symmetry, irrep=7). In
general the ordering of irreps follows standard conventions and in case of doubt you will find the relevant number for
each irrep in the output.
----------------------------
CHARACTER TABLE OF GROUP D2h
----------------------------
GAMMA O1 O2 O3 O4 O5 O6 O7 O8
Ag : 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
B1g: 1.0 1.0 -1.0 -1.0 1.0 1.0 -1.0 -1.0
B2g: 1.0 -1.0 1.0 -1.0 1.0 -1.0 1.0 -1.0
B3g: 1.0 -1.0 -1.0 1.0 1.0 -1.0 -1.0 1.0
Au : 1.0 1.0 1.0 1.0 -1.0 -1.0 -1.0 -1.0
B1u: 1.0 1.0 -1.0 -1.0 -1.0 -1.0 1.0 1.0
B2u: 1.0 -1.0 1.0 -1.0 -1.0 1.0 -1.0 1.0
94 5 Running Typical Calculations
---------------------------------
DIRECT PRODUCT TABLE OF GROUP D2h
---------------------------------
** Ag B1g B2g B3g Au B1u B2u B3u
* int 0 1
C 0 0 0 0 0 0
C 1 0 0 1.35 0 0
H 1 2 0 1.1 120 0
H 1 2 3 1.1 120 180
H 2 1 3 1.1 120 0
H 2 1 3 1.1 120 180
*
And gives:
5.1 Single Point Energies and Gradients 95
------------
SCF SETTINGS
------------
Hamiltonian:
Ab initio Hamiltonian Method .... Hartree-Fock(GTOs)
General Settings:
Integral files IntName .... Test-SYM-CAS-C2H4-1
Hartree-Fock type HFTyp .... CASSCF
Total Charge Charge .... 0
Multiplicity Mult .... 1
Number of Electrons NEL .... 16
Basis Dimension Dim .... 86
Nuclear Repulsion ENuc .... 32.9609050695 Eh
Note that the irrep occupations and active space irreps will be frozen to what they are upon entering the CASSCF
program. This helps to avoid flipping electronic states or active orbitals in and out of the active space.
96 5 Running Typical Calculations
As well as:
-----------------------------
SA-CASSCF TRANSITION ENERGIES
------------------------------
A significant speedup of CASSCF calculations on larger molecules can be achieved with the RI and RIJCOSX
approximation. Thus, simply choose:
%casscf nel 6
norb 6
nroots 1
mult 1
switchstep nr
trafostep rimo #(or simply ri if memory becomes tight)
end
The energy of this calculation is -230.590328 Eh compared to the previous result -230.590271 Eh. Thus, the RI
error is only 0.06 mEh which is certainly negligible for all intents and purposes. We can compare to a calculation
done without the NR solver:
! RHF SV(P)
! moread
%moinp "Test-CASSCF-Benzene-2.mrci.nat"
%casscf nel 6
norb 6
nroots 1
5.1 Single Point Energies and Gradients 97
mult 1
end
This calculation takes 9 cycles to converge. In many (less trivial) cases, first order methods like SuperCI and DIIS
may take many more iterations to converge if they converge at all. On the other hand, these iterations are much
cheaper than NR iterations and therefore it may pay off to do a few iterations more rather than switching to the
expensive second order methods. On top of that, second order methods are also less robust and may diverge in certain
circumstances.
The TrafoStep rimo does only affect the integral transformation in CASSCF calculations while the Fock operators
are still calculated in the standard way using four index integrals. In order to fully avoid any four-index integral
evaluation you can significantly speed up the time needed in each iteration by specifiying ! RIJCOSX in addition to
TrafoStep rimo. This leads to the same type of speedup that RIJCOSX shows for RHF and UHF calculations while
introducing a very similar (small) error.
Let us turn to the breaking of chemical bonds. The first (trivial) example is H2 :
%casscf nel 2
norb 2
mult 1
nroots 1
end
%paras R [0.6 0.65 0.70 0.75 0.80 0.90 1.0 1.1 1.3 1.5 1.7
2.0 2.2 2.4 2.6 2.9 3.2 3.5 3.8 4.1]
end
* xyz 0 1
h 0 0 0
h 0 0 {R}
*
The potential energy surface may be contrasted with the ones obtained by RHF and broken-symmetry UHF calculations
generated by:
And
98 5 Running Typical Calculations
Figure 5.7: Potential Energy Surface of the H2 molecule from RHF, UHF and CASSCF(2,2) calcu-
lations (SVP basis).
It is obvious, that the CASSCF surface is concise and yields the correct dissociation behavior. The RHF surface
is roughly parallel to the CASSCF surface in the vicinity of the minimum but then starts to fail badly as the H-H
bond starts to break. The broken-symmetry UHF solution is identical to RHF in the vicinity of the minimum and
dissociates correctly. It is, however, of rather mediocre quality in the intermediate region wehre it follows the RHF
surface too long too closely.
A more challenging case is to dissociate the N-N bond of the N2 molecule correctly. Using CASSCF with the six
p-orbitals we get a nice potential energy curve (The depth of the minimum is still too shallow compared to experiment
by some 1 eV or so. A good dissociation energy requires a dynamic correlation treatment on top of CASSCF and a
larger basis set).
One can use the H2 example to illustrate the state-averaging feature. Since we have two active electrons we have two
singlets and one triplet. Let us average the orbitals over these three states (we take equal weights for all states):
%casscf nel 2
norb 2
mult 1,3
nroots 2,1
bweight = 1,1
weights[0] = 1,1
weights[1] = 1
end
5.1 Single Point Energies and Gradients 99
Figure 5.8: Potential Energy Surface of the N2 molecule from CASSCF(6,6) calculations (SVP
basis).
which gives:
Figure 5.9: State averaged CASSCF(2,2) calculations on H2 (two singlets, one triplet; SVP basis).
The grey curve is the ground state CASSCF(2,2) curve
One observes, that the singlet and triplet ground states become degenerate for large distances (as required) while
the second singlet becomes the ionic singlet state which is high in energy. If one compares the lowest root of the
state-averaged calculation (in green) with the dedicated ground state calculation (in grey) one gets an idea of the
energetic penalty that is associated with averaged as opposed to dedicated orbitals.
A more involved example is the rotation around the double bond in C2 H4 . Here, the π-bond is broken as one twists
the molecule. The means the proper active space consists of two active electron in two orbitals.
100 5 Running Typical Calculations
The input is (for fun, we average over the lowest two singlets and the triplet):
%casscf nel = 2
norb = 2
mult = 1,3
nroots = 2,1
bweight = 2,1
weights[0] = 1,1
weights[1] = 1
TrafoStep RI
switchstep nr
end
%paras R= 1.3385
Alpha=0,180,37
end
* int 0 1
C 0 0 0 0 0 0
C 1 0 0 {R} 0 0
H 1 2 0 1.07 120 0
H 1 2 3 1.07 120 180
H 2 1 3 1.07 120 {Alpha}
H 2 1 3 1.07 120 {Alpha+180}
*
We can see from this plot, that the CASSCF method produces a nice ground state surface with the correct periodicity
and degeneracy at the end points, which represent the planar ethylene molecule. At 90◦ one has a weakly coupled
diradical and the singlet and triplet states become nearly degenerate, again as expected. Calculations with larger
basis sets and inclusion of dynamic correlation would give nice quantitative results. We have also plotted the RHF
energy (in purple) which gives a qualitatively wrong surface and doesn’t return to the correct solution for planar
ethylene. It is evident that even high quality dynamic correlation treatments like CC or CI would hardly be able to
repair the shortcomings of the poor RHF reference state. In all these cases, CASSCF is the proper starting point for
higher accuracy.
Figure 5.10: State averaged CASSCF(2,2) calculations on C2 H4 (two singlets, one triplet; SV(P)
basis). The grey curve is the state averaged energy and the purple curve corresponds
to RHF.
*int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
*
$new_job
*int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
*
We get:
-----------------------------
SA-CASSCF TRANSITION ENERGIES
------------------------------
Which is very poor. So, here the treatment based on average orbitals does not work at all. So let us do the states one
after the other by adjusting the weights:
Ground state:
%casscf nel 4
norb 3
switchstep nr
mult 1,3
nroots 3,1
bweight = 1,0
weights[0] = 1,0,0
weights[1] = 0
end
First-Singlet:
%casscf nel 4
norb 3
switchstep diis
switchconv 0.003
mult 1,3
nroots 3,1
bweight = 1,0
weights[0] = 0,1,0
weights[1] = 0
end
5.1 Single Point Energies and Gradients 103
Second-Singlet:
%casscf nel 4
norb 3
switchstep diis
switchconv 0.003
mult 1,3
nroots 3,1
bweight = 1,0
weights[0] = 0,0,1
weights[1] = 0
end
First-Triplet
%casscf nel 4
norb 3
switchstep diis
switchconv 0.003
mult 1,3
nroots 3,1
bweight = 0,1
weights[0] = 0,0,0
weights[1] = 1
end
These results are much better and as soon as we include dynamic correlation one would have good transition energies
(future releases will include state specific perturbation corrections to achieve this). This calculation shows the limits
of state averaging – if the orbitals strongly change (as in the present case, since n → π ∗ orbitals are very different
from π → π ∗ orbitals) the state averaging does not lead to good transition energies. In this case, one should follow
SA-CASSCF by MRCI/SORCI (see below) or alternatively use state specific procedures (optimize each state in
turn and then calculate its correlation energy; such multireference methods are not yet available in a good form in
ORCA).
Consider the possibility that you are not sure about the orbital occupancy of your system. Hence you carry out some
CASSCF calculation for various states of the system in an effort to decide on the ground state. You can of course
follow the CASSCF by MR-MP2 or MR-ACPF or SORCI calculations to get a true multireference result for the state
ordering. Yet, in some cases you may also want to obtain a coupled cluster estimate for the state energy difference.
Converging coupled cluster calculation on alternative states in a controlled manner is anything but trivial. Here a
104 5 Running Typical Calculations
feature of ORCA might be helpful. The best single configuration that resembles a given CASSCF state is built from
the natural orbitals of this state. These orbitals are also ordered in the right way to be input into the MDCI program.
The convergence to excited states is, of course, not without pitfalls and limitations as will become evident in the two
examples below.
For this molecule we expect that we should use four active orbitals and four active electrons and that singlet, triplet
and quintet states might be accessible. We start with a simple CASSCF(4,4) optimization on the lowest singlet
state.
* int 0 1
C 0 0 0 0 0 0
C 1 0 0 1.45 0 0
C 2 1 0 1.45 109.4712 0
H 1 2 3 1.1 109.4712 0
H 3 2 1 1.1 109.4712 0
H 2 1 3 1.1 109.4712 240
H 2 1 3 1.1 109.4712 120
*
Of course, one should also do optimizations on the the other two spin states (and with larger basis sets) but for the
sake of the argument, we stick to the singlet structure. Next, the natural orbitals for each state are generated with
the help of the MRCI module. To this end we run a state averaged CASSCF for the lowest four singlet, two triplets
and the quintet and pass that information on to the MRCI module that does a CASCI only (e.g. no excitations):
This produces the files: BaseName.bm sn.nat where ‘m’ is the number of the block (m=0,1,2 correspond to singlet,
triplet and quintet respectively) and ‘n’ stands for the relevant state (n=0,1,2,3 for singlet, n=0,1 for triplet and n=0
for quintet).
These natural orbitals are then fed into unrestricted QCISD(T) calculations:
* int 0 1
C 0 0 0 0.000000 0.000 0.000
C 1 0 0 1.494825 0.000 0.000
C 2 1 0 1.494825 105.185 0.000
H 1 2 3 1.083843 129.438 0.000
H 3 2 1 1.083843 129.438 0.000
H 2 1 3 1.094087 111.176 239.566
H 2 1 3 1.094087 111.176 120.434
*
It is found that the calculations indeed converge to different states. The excited singlets all fall down to the same
state that is approximately 27,000 cm−1 above the lowest solution. The triplets are distinct and the quintet is unique
anyways. Inspection of the coupled cluster wavefunctions indicate that the singlet converged to the closed shell
solution and the first doubly excited state respectively.
These energies can be compared with the genuine multireference calculation obtained from the SORCI method:
106 5 Running Typical Calculations
%casscf nel 4
norb 4
mult 1,3,5
nroots 4,2,1
end
* int 0 1
C 0 0 0 0.000000 0.000 0.000
C 1 0 0 1.494825 0.000 0.000
C 2 1 0 1.494825 105.185 0.000
H 1 2 3 1.083843 129.438 0.000
H 3 2 1 1.083843 129.438 0.000
H 2 1 3 1.094087 111.176 239.566
H 2 1 3 1.094087 111.176 120.434
*
Which produces:
Thus, the singlet ground state is heavily multiconfigurational, the lowest triplet state is moderately multiconfigurational
and the lowest quintet state is of course a single configuration. Interstingly, the lowest singlet, triplet and quintet do
not form a regular spin ladder which might have been expected if one considers the system of being composed of two
interacting S=1 systems. Rather, the lowest singlet and triplet states are close in energy while the lowest quintet is
far away.
The energies are completely different from the QCISD(T) results. However, this is not unexpected based on the
composition of these wavefunctions. These are the limitations of singlet reference methods. Nevertheless, this shows
how such results can be obtained in principle.
As a more positive example, consider some ionized states of the water cation:
%casscf nel 7
norb 6
nroots 3
end
%mrci tsel 0
tpre 0
donatorbs 2
densities 5,1
newblock 2 *
nroots 3
excitations none
refs cas(7,6)end
end
108 5 Running Typical Calculations
end
* int 1 2
O 0 0 0 0.000000 0.000 0.000
H 1 0 0 1.012277 0.000 0.000
H 1 2 0 1.012177 109.288 0.000
*
%casscf nel 7
norb 6
nroots 3
end
* int 1 2
O 0 0 0 0.000000 0.000 0.000
H 1 0 0 1.012277 0.000 0.000
H 1 2 0 1.012177 109.288 0.000
*
* int 1 2
O 0 0 0 0.000000 0.000 0.000
H 1 0 0 1.012277 0.000 0.000
H 1 2 0 1.012177 109.288 0.000
*
Thus, in this example the agreement between single- and multireference methods is good and the unrestricted
QCISD(T) method is able to describe these excited doublet states. The natural orbitals have been a reliable way to
guide the CC equations into the desired solutions. This will work in many cases.
5.1 Single Point Energies and Gradients 109
ORCA has implemented the strongly-contracted version of the NEVPT2. Strongly-contracted NEVPT2 is an internally
contracted multireference perturbation theory which applies to CASSCF type wavefunctions. Therefore NEVPT2 is
suited for systems, where static and dynamic correlation are important. It is an efficient tool to treat multireference
systems with many atoms (∼2000 basis functions) and a large active space (14-16 active orbitals). Typically it takes
less time than the respective CASSCF calculation. The NEVPT2 program is fully parallelized. For a list of available
options and references to the literature see section 6.10.
Besides corrections to the correlation energy ORCA features UV- , IR-, CD- and MCD-spectra as well as EPR
parameters for NEVPT2. These properties are computed using the ”quasi-degenerate perturbation theory” that is
described in section 6.9.2. The NEVPT2 corrections enter as “improved diagonal energies” in this formalism. Further
improvement are possible with the quasi-degenerate NEVPT2 (QD-NEVPT2). Here, the effect of the perturbation
treatment is maped onto the model space leading to an improved CAS-CI wavefunction.
As a simple example consider the groundstate of the nitrogen molecule N2 . After defining the computational details
of our CASSCF calculation, we insert ”! Nevpt2” as simple input or specify ”Nevpt2 true” in the %casscf block.
!def2-svp NEVPT2
%casscf nel 6
norb 6
mult 1
end
* xyz 0 1
N 0.0 0.0 0.0
N 0.0 0.0 1.09768
*
For better control of the program flow it is advised to split the calculation into two parts. First converge the CASSCF
calculation and then in a second step read the converged orbitals and execute the actual NEVPT2.
---------------------------------------------------------------
ORCA-CASSCF
---------------------------------------------------------------
...
NEVPT2-SETTINGS:
A NEVPT2 calculation will be performed on top of the CASSCF wavefunction!
...
---------------------------------------------------------------
< NEVPT2 >
---------------------------------------------------------------
...
===============================================================
NEVPT2 Results
===============================================================
110 5 Running Typical Calculations
*********************
MULT 1, ROOT 0
*********************
---------------------------------------------------------------
Total Energy Correction : dE = -0.15802909
---------------------------------------------------------------
Zero Order Energy : E0 = -108.98888640
---------------------------------------------------------------
Total Energy (E0+dE) : E = -109.14691549
---------------------------------------------------------------
Introducing dynamic correlation with NEVPT2 lowers the energy by 150mEh. ORCA also prints the contribution of
each “excitation class V” to the NEVPT2 correction. We note that in the case of a single reference wavefunction the
“V0 ij,ab” excitation class produces the exact MP2 correlation energy.
In chapter 5.1.7.6 the dissociation of the N2 molecule has been investigated with the CASSCF method. Inserting
“nevpt2 true” into the %casscf block we obtain the NEVPT2 correction as additional information.
%paras
R = 0.7, 2.5, 30
end
*xyz 0 1
N 0.0 0.0 0.0
N 0.0 0.0 {R}
*
NOTE
5.1 Single Point Energies and Gradients 111
Figure 5.11: Potential Energy Surface of the N2 molecule from CASSCF(6,6) and NEVPT2 calcu-
lations (def2-SVP).
• NEVPT2 is implemented as a submodule of CASSCF and will inherit all settings from CASSCF(!
tightscf, !UseSym, !COSMO, !RIJCOSX . . . ).
• NEVPT2 analytic gradients are not available, but numeriscal gradients are!
The MRCI and CASSCF modules may be used to produces energies and properties (g-tensors, zero-field splitting
...) at the level of full configuration interaction (FCI). Larger molcular system naturally require more computational
resources and time. For the CASSCF module, the limit of still feasible calculations is by around 14 electrons in 14
orbitals using configuration state functions (CSF) for the CI expansion. Larger active spaces may be computed in the
framework of the Density Matrix Renormalization Group (DMRG), which may be selected CIStep in the CASSCF
module. These options and modules have their own sections in the manual with a detailed documentation on their
usage and the available properties.
Aside of the mentioned options, ORCA interfaces a determinant based FCI toy-code, which is described here. Besides
energies, the program is capable to compute dipole moments, g-tensors, hyperfine and quadrupole splittings in the
framework of linear response. For response properties, it is assumed that the basis set does not depend on the given
perturbation. To call the program prepare a simple SCF input and add the keyword “!FCI “ on top.
*xyz 0 2
Li 0 0 0
*
By default, energies and the before mentioned properties are computed for the groundstate. For the g-tensor
computation, the origin is chosen as center of electronic charge, while for dipols it is the center of mass. The default
settings for may be edited in the FCI block:
112 5 Running Typical Calculations
The input and output resembles the ORCA standard format from the EPRNMR module and should thus be familiar.
However, it is much more limited in the number of available options and the size of molecules that can be treated.
Currently it can only be used serial and in combination with the nofrozencore option.
Scalar relativistic all-electron calculations can be performed with a variety of relativistic approximations. However,
these need to be combined with a suitable basis set since relativity changes the shapes of orbitals considerably. We
have defined scalar relativistic contracted versions of the QZV, TZV and SV basis sets up to Hg for HF and DFT
computations (but not yet for RI-MP2). They are automatically chosen if TZV or SV is used together with a scalar
relativistic method. For other basis sets you have to take care of the recontraction yourself but note that this is an
expert issue. All scalar relativistic models can be used for geometry optimization as well.
CAUTION:
• For geometry optimizations we apply a one-center relativistic correction. This slightly changes
the energies – so DO NOT MIX single-point calculations without the one-center approximation
with geometry optimization energies that DO make use of this feature.The impact of the one-
center approximation on the geometries is very small.
5.1.10.1 Douglas-Kroll-Hess
ORCA has implemented the standard second-order DKH procedure that is normally satisfactory for all intents
and purposes. The scalar relativistic DKH treatment is compatible with any of the SCF methods and will also be
transferred over to the correlation treatments.
We rather strongly recommend the use of the SV, TZV and QZV basis sets with or without ‘def2’ and appropriate
polarization functions. For these basis sets we have developed segmented relativistic all electron basis sets for almost
the entire periodic table. The basis sets are tested and perform very well in an acceptably economic fashion.
NOTE: You should have the basis set and ZORA or DKH commands in the same input line!
In addition to the DKH method the 0th order regular approximation (ZORA; pioneered by van Lenthe et al., see
Ref. [81] and many follow up papers by the Amsterdam group) is implemented into ORCA in an approximate way
(section 6.12) which facilitates the calculation of analytical gradients. Our ZORA implementation essentially follows
van Wüllen [82] and solves the ZORA equations with a suitable model potential which is derived from accurate atomic
ZORA calculations. At this point the elements up to atomic number 86 are available with more to come. The ZORA
method is highly dependent on numerical integration and it is very important to pay attention to the subject of radial
integration accuracy (vide infra)! If the relevant precautions are taken, the use of the ZORA or IORA methods is as
easy as in the DKH case. For example:
ATTENTION
• The scalar relativistic module has many options which allow you considerably finetune the calculations. Details
are in section 6.12.
• The scalar relativistic treatment requires flexible basis sets, in particular in the core region. Only SV, TZV and
QZV basis sets have been recontracted in the ZORA and DKH models (and the attached polarization functions
of course). Alternatively, one choice that you have is to uncontract your basis set using the Decontract keyword
but it is likely that you also need additional steep primitives.
• Scalar relativistic calculations may need larger integration grids in the radial part. Consider to use a higher
IntAcc parameter or at least to increase the radial integration accuracy around the heavy atoms using
SpecialGridAtoms and SpecialGridIntAcc
• The calculation of properties in relativistic treatments is not straightforward since the influence of the ‘small
component’ in the Dirac equation is neglected in the calcuation of expectation values. ORCA takes these
‘picture change’ effects to some extent into account. Please refer to individual sections.
114 5 Running Typical Calculations
Atomic natural orbitals are a special class of basis sets. They are represented by the orthonormal set of orbitals that
diagonalizes a spherically symmetric, correlated atomic density. The idea is to put as much information as possible
into each basis functions such that one obtains the best possible result with the given number of basis functions. This
is particularly important for correlated calculations where the number of primitives is less an issue than the number of
basis functions.
Usually, ANO basis sets are ‘generally contracted’ which means that for any given angular momentum all primitives
contribute to all basis functions. Since the concept of ANOs only makes sense if the underlying set of primitives is large,
the calculations readily become very expensive unless special precaution is taken in the integral evaluation algorithms.
ORCA features special algorithms for ANO basis sets together with accurate ANO basis sets for non-relativistic
calculations. However, even then the integral evaluation is so expensive that efficiency can only be realized if all
integrals are stored on disk and are re-used as needed.
In the first implementation, the use of ANOs is restricted to the built-in ANO basis sets (ano-pVnZ, saug-ano-pVnZ,
aug-ano-pVnZ, n = D, T, Q, 5). These are built upon the cc-pV6Z primitives and hence, the calculations take
significant time.
NOTE:
• Geometry optimizations with ANOs are discouraged; they will be very inefficient.
This yieds:
ano-pVTZ:
E(SCF) = -113.920388785
E(corr)= -0.427730189
cc-pVTZ:
E(SCF) = -113.911870901
E(corr)= -0.421354947
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 115
Thus, the ANO-based SCF energy is ca. 8–9 mEh lower and the correlation energy almost 2 mEh lower than with the
cc-basis set of the same size. Usually, the ANO results are much closer to the basis set limit than the cc-results. Also,
ANO values extrapolate very well (see section 5.1.3.5)
Importantly, the integrals are all stored in this job. Depending on your system and your patience, this may be possible
up to 300–500 basis functions. The ORCA correlation modules have been rewritten such that they deal efficiently
with these stored integrals. Thus, we might as well have used ! MO-CCSD(T) or ! AO-CCSD(T), both of which would
perform well.
Yet, the burden of generating and storing all four-index integrals quickly becomes rather heavy. Hence, the combination
of ANO basis sets with the RI-JK technique is particularly powerful and efficient. For example:
For the SCF, this works very well and allows for much larger ANO based calculations to be done efficiently. Also,
RI-MP2 can be done very efficiently in this way. However, for higher order correlation methods such as CCSD(T) the
logical choice would be RI-CCSD(T) which is distinctly less efficient than the AO or MO based CCSD(T) (roughly a
factor of two slower). Hence, ORCA implements a hybrid method where the RI approximation is used to generate all
four index integrals. This is done via the ‘RI-AO’ keyword:
In this case either AO-CCSD(T) or MO-CCSD(T) would both work well. This does not solve the storage bottleneck
with respect to the four index integrals of course. If this becomes a real issue, then RI-CCSD(T) is mandatory. The
error in the total energy is less than 0.1 mEh in the present example.
NOTE:
• With conventional RI calculations the use of a second fit basis set is not possible and inconsistent
results will be obtained. Hence, stick to one auxiliary basis!
Finally, starting from version 2.2 ORCA supports geometry optimization using analytical gradients at the Hartree-Fock
and DFT levels. From version 2.4.10 onward, redundant internal coordinates are available which lead to much more
efficient structure optimizations. Starting from 2.4.30 the coordinate set-up has been improved and from version
2.5.30 onward, relaxed surface scans are available with ORCA. From 2.6.0 onward, transition state (TS) optimization
is implemented in ORCA. In the DFT case particularly efficient optimizations result with nonhybrid functionals due
to the use of the RI approximation (i.e. the analytic gradients for the RI-J method are also available). From 2.7.0
on, numerical gradients are available for all levels of theory, i.e. optimizations can be performed for all methods
(although quite time-consuming). Additionally several approaches to construct an initial Hessian for TS optimization
are available. Another interesting feature are MECP (Minimum Energy Crossing Point) optimizations.
116 5 Running Typical Calculations
an optimization with the RI method (the BP functional is recommend) would simply look like:
If the analytic gradient is not available, the numerical gradient can simply be requested via:
! NumGrad
NOTE
• Be aware that the numerical gradient is quite expensive. The time for one gradient calculation is equal to 6 ×
(number of atoms) × (time for one single point calculation).
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 117
• The numerical gradient can be calculated in a multi-process run, using a maximum of three times the number
of atoms (see section 2.2).
More details on various options, geometry convergence criteria and the like are found in section 6.13.
NOTE
• TightSCF in the SCF part is set as default to avoid the buildup of too much numerical noise in the gradients.
TIP
• If you want to be on the safe side with DFT it is probably advisable to use the settings ! Grid4 NoFinalGrid
although the defaults should also be o.k.
• In rare cases the redundant internal coordinate optimization fails. In this case, you may try to use COPT
(optimization in Cartesian coordinates). If this optimization does not converge, you may try the desperate
choice to use ZOPT, GDIIS-COPT or GDIIS-ZOPT. This will likely take many more steps to converge but should
be stable.
• For optimizations in Cartesian coordinates the initial guess Hessian is constructed in internal coordinates and
thus these optimizations should converge only slightly slower than those in internal coordinates. Nevertheless,
if you observe a slow convergence behaviour , it may be a good idea to compute a Hessian initially (perhaps at
a lower level of theory) and use InHess read in order to improve convergence.
• At the beginning of a TS optimization more information on the curvature of the PES is needed than a model
Hessian can give. Nevertheless you do not need to calculate the full numerical Hessian when starting such a
calculation. With ORCA we’ve made good experience with approximations to the exact Hessian. Here it is
recommended to either directly combine the TS optimization with the results that are obtained with a relaxed
surface scan or to use the Hybrid Hessian as the initial Hessian, depending on the nature of the TS mode. Note
that these approximate Hessians do never replace the exact Hessian at the end of the optimization, which is
always needed to verify the minimum or first order saddle point nature of the obtained structure.
The convergence of a geometry optimization crucially depends on the quality of the initial Hessian. In the simplest
case it is taken as a unit matrix (in redundant internal coordinates we use 0.5 for bonds, 0.2 for angles and 0.1 for
dihedrals and improper torsions). However, simple model force-fields like the ones proposed by Schlegel, Lindh or
Almlöf are available and lead to much better convergence. The different guess Hessians can be set via the InHess
option which can be either unit, Almloef, Lindh or Schlegel in redundant internal coordinates. From version 2.5.30
on these model force-fields (built up in internal coordinates) can also be used in optimizations in cartesian coordinates.
For minimizations we recommend the Almloef Hessian (which is also the default for minimizations), the Lindh and
Schlegel Hessian yield a similar convergence behaviour. Of course the best Hessian is the exact one. Read may be
used to input an exact Hessian or one that has been calculated at a lower level of theory (or a ‘faster’ level of theory).
From version 2.5.30 on this option is also available in redundant internal coordinates. But we have to point out that
the use of the exact Hessian as initial one is only of little help, since in these cases the convergence is usually only
slightly faster, while at the same time much more time is spent in the calculation of the initial Hessian.
To sum it up: we advise to use one of the simple model force-fields for minimizations.
118 5 Running Typical Calculations
The coordinate system for the optimization can be chosen by the coordsys (= cartesian or redundant or redundant old)
variable in the %geom Block. The default is the redundant internal coordinates (redundant old is the coordinate set
that was used as default redundant internal coordinates before version 2.4.30). If the optimization with redundant
fails, redundant old can still be used as an alternative, and in cases where the internal coordinate systems lead to
problems, you can still try cartesian. If the optimization is then carried out in cartesian displacement coordinates
with a simple model force-field Hessian, the convergence will be only slightly slower. With a unit matrix initial Hessian
very slow convergence will result.
# ---------------------------------------------------
# First calculate the frequencies at the input
# geometry which is deliberately chosen poorly
# ---------------------------------------------------
! RHF AM1 NumFreq
%base "FirstJob"
* int 0 1
C 0 0 0 0 0 0
O 1 0 0 1.3 0 0
H 1 2 0 1.1 110 0
H 1 2 3 1.1 110 180
*
$new_job
# --------------------------------------------------------
# Now the real job
# --------------------------------------------------------
! B3LYP SVP TightSCF PModel
! Opt
%base "SecondJob"
%geom GDIISMaxEq 20
UseGDIIS false
InHess Read
InHessName "FirstJob.hess"
# this file must be either a .hess file from a
# frequency run or a .opt file left over from a
# previous geometry optimization
end
* int 0 1
C 0 0 0 0 0 0
O 1 0 0 1.3 0 0
H 1 2 0 1.1 110 0
H 1 2 3 1.1 110 180
*
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 119
NOTE:
• The guess PModel is chosen for the second job since DFT or HF calculations cannot be started from semi-
empirical orbitals
• GDIIS has been turned off and the number of gradients used in the quasi-Newton method has been enhanced.
This is advisable if a good starting Hessian is available.
TIP
• For transition metal complexes MNDO, AM1 or PM3 Hessians are not available. You can use ZINDO/1 or
NDDO/1 Hessians instead. They are of lower quality than MNDO, AM1 or PM3 for organic molecules but
they are still far better than the standard unit matrix choice.
• If the quality of the initial semi-empirical Hessian is not sufficient you may use a “quick” RI-DFT job (e.g. BP
Def-1 NoFinalGrid)
• In semi-empirical geometry optimizations on larger molecules or in general when the molecules become larger
the redundant internal space may become large and the relaxation step may take a significant fraction of the
total computing time. In this case you may revert to delocalized internal coordinates which only keep the
non-redundant degrees of freedom and leads to more efficient update steps. It is slightly less robust though.
You can perform constrained optimizations which can, at times, be extremely helpful. This works as shown in the
following example:
* int 0 1
C 0 0 0 0.0000 0.000 0.00
O 1 0 0 1.2500 0.000 0.00
H 1 2 0 1.1075 122.016 0.00
H 1 2 3 1.1075 122.016 180.00
*
NOTE:
120 5 Running Typical Calculations
• “value” in the constraint input is optional. If you do not give a value, the present value in the structure is
constrained. For cartesian constraints you can’t give a value, but always the initial position is constrained.
• It is recommended to use a value not too far away from your initial structure.
• If there are only a few coordinates that have to be optimized you can use the invertConstraints option:
%geom Constraints
{ B 0 1 C }
end
invertConstraints true # only the C-O distance is optimized
# does not affect Cartesian coordinates
end
• In some cases it is advantageous to optimize only the positions of the hydrogen atoms and let the remaining
molecule skeleton fixed:
NOTE:
• In the special case of a fragment optimization (see next point) the optimizehydrogens keyword does not fix the
heteroatoms, but ensures that all hydrogen positions are relaxed.
If you want to study systems, which consist of several molecules (e.g. the active site of a protein) with constraints,
then you can either use cartesian constraints (see above) or use ORCA’s fragment constraint option. ORCA allows
the user to define fragments in the system. For each fragment one can then choose separately whether it should be
optimized or constrained. Furthermore it is possible to choose fragment pairs whose distance and orientation with
respect to each other should be constrained. Here, the user can either define the atoms which make up the connection
between the fragments, or the program chooses the atom pair automatically via a closest distance criterium. ORCA
then chooses the respective constrained coordinates automatically. An example for this procedure is shown below.
The coordinates are taken from a crystal structure [PDB-code 2FRJ]. In our gas phase model we choose only a
small part of the protein, which is important for its spectroscopic properties. Our selection consists of a heme-group
(fragment 1), important residues around the reaction site (lysine (fragment 2) and histidine (fragment 3)), an important
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 121
water molecule (fragment 4), the NO-ligand (fragment 5) and part of a histidine (fragment 6) coordinated to the
heme-iron. In this constrained optimization we want to maintain the position of the heteroatoms of the heme group.
Since the protein backbone is missing, we have to constrain the orientation of lysine and histidine (fragments 2 and 3)
side chains to the heme group. All other fragments (the ones which are directly bound to the heme-iron and the water
molecule) are fully optimized internally and with respect to the other fragments. Since the crystal structure does not
reliably resolve the hydrogen positions, we relax also the hydrogen positions of the heme group.
If you want to run this optimization: be aware that it will take some time!
NOTE:
• You have to connect the fragments in such a way that the whole system is connected.
• Since the initial Hessian for the optimization is based upon the internal coordinates: Connect the fragments in
a way that their real interaction is reflected.
• This option can be combined with the definition of constraints, scan coordinates and the optimizeHydrogens
option (but: its meaning in this context is different to its meaning in a normal optimization run, relatively
straightforward see section 6.13).
• Can be helpful in the location of complicated transition states (with relaxed surface scans).
A final thing that comes in really handy are relaxed surface scans, i.e. you can scan through one variable while all
others are relaxed. It works as shown in the following example:
* int 0 1
C 0 0 0 0.0000 0.000 0.00
O 1 0 0 1.3500 0.000 0.00
H 1 2 0 1.1075 122.016 0.00
H 1 2 3 1.1075 122.016 180.00
*
In the example above the value of the bond length between C and O will be changed in 12 equidistant steps from 1.35
down to 1.10 Ångströms and at each point a constrained geometry optimization will be carried out.
NOTE:
124 5 Running Typical Calculations
• If you want to perform a geometry optimization at a series of values with non-equidistant steps you can give
this series in square brackets, [ ]. The general syntax is as follows:
• In addition to bond lengths you can also scan bond angles and dihedral angles:
TIP
• As in constrained geometry optimization it is possible to start the relaxed surface scan with a different scan
parameter than the value present in your molecule. But keep in mind that this value should not be too far
away from your initial structure.
A more challenging example is shown below. Here, the H-atom abstraction step from CH4 to OH-radical is computed
with a relaxed surface scan (vide supra). The job was run as follows:
It is obvious that the reaction is exothermic and passes through an early transition state in which the hydrogen jumps
from the carbon to the oxygen. The structure at the maximum of the curve is probably a very good guess for the true
transition state that might be located by a transition state finder.
You will probably find that such relaxed surface scans are incredibly useful but also time consuming. Even the simple
job shown below required several hundred single point and gradient evaluations (convergence problems appear for the
SCF close to the transition state and for the geometry once the reaction partners actually dissociate – this is to be
expected). Yet, when you search for a transition state or you want to get insight into the shapes of the potential
energy surfaces involved in a reaction it might be a good idea to use this feature. One possibility to ease the burden
somewhat is to perform the relaxed surface scan with a “fast” method and a smaller basis set and then do single point
calculations on all optimized geometries with a larger basis set and/or higher level of theory. At least you can hope
that this should give a reasonable approximation to the desired surface at the higher level of theory – this is the case
if the geometries at the lower level are reasonable.
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 125
Figure 5.12: Relaxed surface scan for the H-atom abstraction from CH4 by OH-radical
(B3LYP/SV(P)).
A different type of scan is implemented in ORCA in conjunction with relaxed surface scans. Such scans produce a
series of structures that are typically calculated using some ground state method. Afterwards one may want to do
additional or different calculations along the generated pathway such as excited state calculations or special property
calculations. In this instance, the “multiple XYZ scan” feature is useful. If you request reading from a XYZ file via:
this file could contain a number of structures. The format of the file is:
Number of atoms M
Comment line
AtomName1 X Y Z
AtomName2 X Y Z
...
AtomNameM X Y Z
>
Number of atoms M
Comment line
AtomName1 X Y Z
...
Thus, the structures are simply of the standard XYZ format, separated by a ‘>’ sign. After the last structure no ‘>’
should be given but a blank line instead. The program then automatically recognizes that a multiple XYZ scan run
126 5 Running Typical Calculations
is to be performed. Thus, single point calculations are performed on each structure in sequence and the results are
collected at the end of the run in the same kind of trajectory.dat files as produced from trajectory calculations.
In order to aid in using this feature, the relaxed surface scans produce a file called MyJob.allxyz that is of the correct
format to be re-read in a subsequent run.
If you provide a good estimate for the structure of the transition state (TS) structure, then you can find the respective
transition state with the following keywords (in this example we take the structure with highest energy of the above
relaxed surface scan):
end
* int 0 2
C 0 0 0 0.000000 0.000 0.000
H 1 0 0 1.285714 0.000 0.000
H 1 2 0 1.100174 107.375 0.000
H 1 2 3 1.100975 103.353 119.612
H 1 2 3 1.100756 105.481 238.889
O 2 1 3 1.244156 169.257 17.024
H 6 2 1 0.980342 100.836 10.515
*
NOTE:
• You need a good guess of the TS structure. Relaxed surface scans can help in almost all cases (see also example
above).
• For TS optimization (in contrast to geometry optimization) an exact Hessian, a Hybrid Hessian or a modification
of selected second derivatives is necessary.
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 127
• Check the eigenmodes of the optimized structure for the eigenmode with a single imaginary frequency. You can
also visualize this eigenmode with orca pltvib (section 5.9.3.5).
• If you are using the Hybrid Hessian, then you have to check carefully at the beginning of the TS optimization
(after the first three to five cycles) whether the algorithm is following the correct mode (see TIP below). If this
is not the case you can use the same Hybrid Hessian again via the inhess read keyword and try to target a
different mode (via the TS Mode keyword, see below).
In the example above the TS mode is of local nature. In such a case you can directly combine the relaxed surface scan
with the TS optimization with the
! ScanTS
NOTE:
• The algorithm performs the relaxed surface scan, aborts the Scan after the maximum is surmounted, chooses
the optimized structure with highest energy, calculates the second derivative of the scanned coordinate and
finally performs a TS optimization.
• If you do not want the scan to be aborted after the highest point has been reached but be carried out up to the
last point, then you have to type:
%geom
fullScan true # do not abort the scan with !ScanTS
end
128 5 Running Typical Calculations
As transition state finder we implemented the quasi-Newton like hessian mode following algorithm. [83–91] This
algorithm maximizes the energy with respect to one (usually the lowest) eigenmode and minimizes with respect to the
remaining 3N-7(6) eigenmodes of the Hessian.
TIP
• You can check at an early stage if the optimization will lead to the “correct” transition state. After the first
optimization step you find the following output for the redundant internal coordinates:
---------------------------------------------------------------------------
Redundant Internal Coordinates
(Angstroem and degrees)
Definition Value dE/dq Step New-Value frac.(TS mode)
----------------------------------------------------------------------------
1. B(H 1,C 0) 1.2857 0.013136 0.0286 1.3143 0.58
2. B(H 2,C 0) 1.1002 0.014201 -0.0220 1.0782
3. B(H 3,C 0) 1.1010 0.014753 -0.0230 1.0779
4. B(H 4,C 0) 1.1008 0.014842 -0.0229 1.0779
5. B(O 5,H 1) 1.2442 -0.015421 -0.0488 1.1954 0.80
6. B(H 6,O 5) 0.9803 0.025828 -0.0289 0.9514
7. A(H 1,C 0,H 2) 107.38 -0.001418 -0.88 106.49
8. A(H 1,C 0,H 4) 105.48 -0.002209 -0.46 105.02
9. A(H 1,C 0,H 3) 103.35 -0.003406 0.08 103.43
10. A(H 2,C 0,H 4) 113.30 0.001833 0.35 113.65
11. A(H 3,C 0,H 4) 113.38 0.002116 0.26 113.64
12. A(H 2,C 0,H 3) 112.95 0.001923 0.45 113.40
13. A(C 0,H 1,O 5) 169.26 -0.002089 4.30 173.56
14. A(H 1,O 5,H 6) 100.84 0.003097 -1.41 99.43
15. D(O 5,H 1,C 0,H 2) 17.02 0.000135 0.24 17.26
16. D(O 5,H 1,C 0,H 4) -104.09 -0.000100 0.52 -103.57
17. D(O 5,H 1,C 0,H 3) 136.64 0.000004 0.39 137.03
18. D(H 6,O 5,H 1,C 0) 10.52 0.000078 -0.72 9.79
----------------------------------------------------------------------------
Every Hessian eigenmode can be represented by a linear combination of the redundant internal coordinates. In
the last column of this list the internal coordinates, that represent a big part of the mode which is followed uphill,
are labelled. The numbers reflect their magnitude in the TS eigenvector (fraction of this internal coordinate in the
linear combination of the eigenvector of the TS mode). Thus at this point you can already check whether your TS
optimization is following the right mode (which is the case in our example, since we are interested in the abstraction
of H1 from C0 by O5 ).
• If you want the algorithm to follow a different mode than the one with lowest eigenvalue, you can either choose
the number of the mode:
%geom
TS_Mode {M 1} # {M 1} mode with second lowest eigenvalue
end # (default: {M 0}, mode with lowest eigenvalue)
end
or you can give an internal coordinate that should be strongly involved in this mode:
5.2 Geometry Optimizations, Surface Scans, Transition States, MECPs 129
%geom
TS_Mode {B 1 5} # bond between atoms 1 and 5,
end # you can also choose an angle: {A N1 N2 N1}
# or a dihedral: {D N1 N2 N3 N4}
end
For transition state (TS) optimization a simple initial Hessian, which is used for minimization, is not sufficient. In a
TS optimization we are looking for a first order saddle point, and thus for a point on the PES where the curvature is
negative in the direction of the TS mode (the TS mode is also called transition state vector, the only eigenvector of
the Hessian at the TS geometry with a negative eigenvalue). Starting from an initial guess structure the algorithm
used in the ORCA TS optimization has to climb uphill with respect to the TS mode, which means that the starting
structure has to be near the TS and the initial Hessian has to account for the negative curvature of the PES at
that point. The simple force-field Hessians can not account for this, since they only know harmonic potentials and
thus positive curvature. The most straightforward option in this case would be (after having looked for a promising
initial guess structure with the help of a relaxed surface scan) to calculate the exact Hessian before starting the TS
optimization. With this Hessian (depending on the quality of the initial guess structure) we know the TS eigenvector
with its negative eigenvalue and we have also calculated the exact force constants for all other eigenmodes (which
should have positive force constants). The calculation of the exact Hessian is very time consuming, and one could
ask if it is really necessary to calculate the full exact Hessian since the only special thing (compared to the simple
force-field Hessians) that we need is the TS mode with a negative eigenvalue. Here ORCA provides two different
possibilities to speed up the Hessian calculation, depending on the nature of the TS mode: the Hybrid Hessian and
the calculation of the Hessian value of an internal coordinate. For both possibilities the initial Hessian is based on a
force-field Hessian and only parts of it are calculated exactly. If the TS mode is of very local nature, which would be
the case when e.g. cleaving or forming a bond, then the exactly calculated part of the Hessian can be the second
derivative of only one internal coordinate, the one which is supposed to make up the TS mode (the formed or cleaved
bond). If the TS mode is more complicated and more delocalized, as e.g. in a concerted proton transfer reaction, then
the hybrid Hessian, a Hessian matrix in which the numerical second derivatives are calculated only for those atoms,
which are involved in the TS mode (for more details, see section 6.13), should be sufficient. If you are dealing with
more complicated cases where these two approaches do not succeed, then you still have the possibility to start the TS
optimization with a full exact Hessian.
Numerical Frequency calculations are quite expensive. You can first calculate the Hessian at a lower level of theory or
with a smaller basis set and use this Hessian as input for a subsequent TS optimization:
Another possibility to save computational time is to calculate exact Hessian values only for those atoms which are
crucial for the TS optimization and to use approximate Hessian values for the rest. This option is very useful for big
systems, where only a small part of the molecule changes its geometry during the transition and hence the information
of the full exact Hessian is not necessary. With this option the coupling of the selected atoms are calculated exactly
and the remaining Hessian matrix is filled up with a model initial Hessian:
130 5 Running Typical Calculations
For some molecules the PES near the TS can be very far from ideal for a Newton-Raphson step. In such a case ORCA
can recalculate the Hessian after a number of steps:
%geom
Recalc_Hess 5 # calculate the Hessian at the beginning
end # and recalculate it after 5,10,15,... steps
Another solution in that case is to switch on the trust radius update, which reduces the step size if the Newton-Raphson
steps behave unexpected and ensures bigger step size if the PES seems to be quite quadratic:
%geom
Trust 0.3 # Trust <0 - use fixed trust radius.
# Trust >0 - use trust radius update. I.e. 0.3 means:
# start with trust radius 0.3 and use trust
end # radius update. (default -0.3 au)
• If you look for a TS of a breaking bond the respective internal coordinate might not be included in the list
of redundant internal coordinates (but this would accelerate the convergence). In such a case (and of course
in others) you can add coordinates to or remove them from the set of autogenerated redundant internal
coordinates:
There are reactions where the analysis of only one spin state of a system is not sufficient, but where the reactivity
is determined by two or more different spin states (Two- or Multi-state reactivity). The analysis of such reactions
reveals that the different PESs cross each other while moving from one stationary point to the other. In such a case
you might want to use the ORCA optimizer to locate the point of lowest energy of the crossing surfaces (called the
minimum energy crossing point, MECP).
As an example for such an analysis we show the MECP optimization of the quartet and sextet state of [FeO]+ .
NOTE:
• For further options for the MECP calculation, see section 6.13.3.
TIP:
• You can often use a minimum or TS structure of one of the two spin states as initial guess for your MECP-
optimization. If this doesn’t work, you might try a scan to get a better initial guess.
The results of the MECP optimization are given in the following output. The distance where both surfaces cross
is at 1.994 Å. In this simple example there is only one degree of freedom and we can also locate the MECP via a
parameter scan. The results of the scan are given in Figure for comparison. Here we see that the crossing occurs at a
Fe-O-distance of around 2 Å.
For systems with more than two atoms a scan is not sufficient any more and you have to use the MECP optimization.
***********************HURRAY********************
*** THE OPTIMIZATION HAS CONVERGED ***
*************************************************
-------------------------------------------------------------------
Redundant Internal Coordinates
--- Optimized Parameters ---
(Angstroem and degrees)
Definition OldVal dE/dq Step FinalVal
-------------------------------------------------------------------
1. B(O 1,Fe 0) 1.9942 -0.000001 0.0000 1.9942
-------------------------------------------------------------------
*******************************************************
*** FINAL ENERGY EVALUATION AT THE STATIONARY POINT ***
*** (AFTER 8 CYCLES) ***
132 5 Running Typical Calculations
Figure 5.13: Parameter scan for the quartet and sextet state of [FeO]+ (B3LYP/SV(P)).
*******************************************************
------------------------------------- ----------------
Energy difference between both states -0.000002398
------------------------------------- ----------------
A more realistic example with more than one degree of freedom is the MECP optimization of a structure along the
reaction path of the CH3 O↔CH2 OH isomerization.
NOTE:
• To verify that a stationary point in a MECP optimization is a minimum, you have to use an adapted frequency
analysis, called by SurfCrossNumFreq (see section 6.13.3).
5.3 Vibrational Frequencies 133
ORCA can be used as external optimizer. For details on how to use only the optimizer of ORCA, have a look at
section 6.13.5.
Vibrational frequency calculations are available through analytical differentiation of the SCF energy as well as one- or
two-sided numerical differentiation of analytical gradients, i.e. for Hartree-Fock and DFT models. For methods without
analytical gradient a numerically calculated gradient can be used (Keyword NumGrad) for numerical frequencies.
Please note, that this will be a very time consuming calculation.
! bohrs
* xyz 0 1
O -1.396288 -0.075107 0.052125
O 1.396289 -0.016261 -0.089970
H -1.775703 1.309756 -1.111179
H 1.775687 0.140443 1.711854
*
The user has full controll over approximations involved in the Hessian calculation. Hess2ElFlags(i1, i2, i3, i4), where
ik (ik=0 to 2) adjust the use of the RI and COSX approximations. In case ik=0 no approximation in the 2-electron
integrals are introduced. ik=1 means the RI approximation in the Coulomb part is in use. ik=2 corresponds to
COSX algorithm in the HF exchange. i1 corresponds to explicit Fock matrix derivatives, i2 - Fock matrix depended
on pseudo density, i3 - solution of the CP-SCF equations, i4 - explicit integral second derivative. In the introduced
notation the RIJDX default flags are (1, 1, 1, 1), the RIJCOSX are (1, 2, 2, 1). Analytical frequency calculations are
also implemented at MP2 level. Please note, that the Hess2ElFlags are ignored by the MP2 module. Furthermore,
MP2 frequency calculations are very time-consuming and need a lot of disk space.
At the end of the frequency job you get an output like this:
-----------------------
VIBRATIONAL FREQUENCIES
-----------------------
0: 0.00 cm**-1
1: 0.00 cm**-1
2: 0.00 cm**-1
3: 0.00 cm**-1
4: 0.00 cm**-1
5: 0.00 cm**-1
6: 311.78 cm**-1
7: 887.65 cm**-1
8: 1225.38 cm**-1
9: 1394.81 cm**-1
10: 3624.88 cm**-1
11: 3635.73 cm**-1
This output consists of the calculated vibrational frequencies, the vibrational modes and the thermochemical properties
at 298.15 K. In the example above there are six frequencies which are identically zero. These frequencies correspond
to the rotations and translations of the molecule. They have been projected out of the Hessian before the calculation
of the frequencies and thus, the zero values do not tell you anything about the quality of the Hessian that has been
diagonalized. The reliability of the calculated frequencies has to be judged by comparison of calculations with different
convergence criteria, increments, integration grids etc. The numerical error in the frequencies may reach 50 cm−1 but
should be considerably smaller in most cases. Significant negative frequencies of at least a few hundred cm−1 indicate
saddle points of the energy hypersurface and prove that the optimization has not resulted in an energy minimum.
NOTE
5.3 Vibrational Frequencies 135
• The calculation of frequencies puts rather high demands on both computer time and accuracy. In order to get
reliable frequencies make sure that:
– Your SCF is tightly converged. A convergence accuracy of at least 10−7 Eh in the total energy and 10−6
in the density is desirable.
– The use of two-sided (i.e. central) differences increases the computation time by a factor of two but gives
more accurate and reliable results.
– Small auxiliary basis sets like DGauss/J or DeMon/J have not resulted in fully converged frequencies in
my hands (up to 40 cm−1 difference compared to frequencies calculated without RI). The larger Ahlrichs
aux-basis sets SV/J and TZV/J are thought to give more reliable results.
– Possibly, the convergence criteria of the geometry optimization need to be tightened in order to get fully
converged results.
– If you can afford it, decrease the numerical increment to 0.001 Bohr or so. This puts even higher demands
on the convergence characteristics of the SCF calculation but should also give more accurate numerical
second derivatives. If the increment is too small or too high inaccurate results are expected. The value
0.02 bohr used by many other workers has been found to be too large in my hands (residual frequencies
of ca. 50 cm−1 ).
Analytical frequencies calculation is a memory consuming step. To control memory consumption the %maxcore
parameter must be set. For example %maxcore 8192 - use 8 Gb of memory for the calculation. The user should
provide the value according to the computer available memory. The batching based on %maxcore parameter will be
introduced automatically to overcome probable memory shortage.
Numerical frequency calculations are restartable. If the job died for one reason or another you can simply continue
from where it stopped as in the following example:
! RHF STO-3G
! NumFreq
%freq Restart true # restart an old calculation
# this requires a .hess file to be present
end
* int 0 1
C 0 0 0 0.0000 0 0
C 1 0 0 1.2160 0 0
H 1 2 0 1.083 180 0
H 2 1 3 1.083 180 0
*
NOTE
• You must not change the level of theory, basis set or any other detail of the calculation. Any change will
produce an inconsistent, essentially meaningless Hessian.
• The geometry at which the Hessian is calculated must be identical. If you followed a geometry optimization by
a frequency run then you must restart the numerical frequency calculation from the optimized geometry.
136 5 Running Typical Calculations
• Numerical frequencies can be performed in multi-process mode. Please see section 2.2 (‘Hints on the use of
parallel ORCA’) for more information.
• In multi-process mode the restart will take off from the locally calculated Hessians (.procmyid.hess, e.g.
.proc0.hess, .proc1.hess) where myid is the process id of some local process. Please make sure that all these
local Hessians get copied to your compute directory. If restart is set and no local files to be found, ORCA will
try to restart on the global Hessian file.
• The Hessian file will contain a joblist, showing which displacements have been performed. You can recalculate
a single (or more) displacements by changing the 1 (‘done’-) entry to 0 (‘to-be-done’).
In order to make your life easier, we have implemented a mechanism that allows you to run several fragments of a
reaction in one input file and obtain the energy difference between reactants, intermediates and products directly in
the output file. The mechanism is such that you run a compound job and assign each fragment that you whish to
include in the energy profile a name:
%id "Educt"
...
$new_job
%id "Educt"
...
$new_job
%id product
...
In this example, there are three fragments. The first two are educts and the third one is a product. Thus we look at a
reaction A+B→C. However, more complicated transformations may easily be specified in an analogous way. The final
energies are always referenced to the first fragment encountered in the file. It is of course your responsibility that the
fragments make sense and that the chemical reactions that your are calculating are balanced with respect to nuclei
and electrons.
Let us look at a very simple example, the reaction of H2 and CO to give H2 CO:
! B3LYP SV(P)
%id "educt"
* xyz 0 1
H 0.000 0.000 0.000
H 0.75 0.000 0.000
*
$new_job
! B3LYP SV(P) PModel
%id "educt"
* xyz 0 1
5.4 Reaction Energies from Compound Jobs 137
NOTE:
• You are not limited to “educt” and “product”. You might as well include intermediates, transition states,
minimum energy crossing points etc. in the list of fragments
If you do not have optimized geometries for each species you may want to run a geometry optimization at a lower
level and obtain energies at a higher level. This can be accomplished in an automatic way as follows:
# ---------------
# Now fragment 1: H2 opt at BP/SV(P) then single point CCSD(T)
# ---------------
! BP SV(P) TightSCF Opt PModel
%base "H2-BP"
* xyz 0 1
H 0.000 0.000 0.000
H 0.75 0.000 0.000
*
$new_job
! RHF CCSD(T) TZVPP
%id "educt"
%base "H2-CCSDT"
* xyzfile 0 1 H2-BP.XYZ
# ---------------
# Now fragment 2: CO opt at BP/SV(P) then single point CCSD(T)
# ---------------
$new_job
! BP SV(P) TightSCF Opt PModel
%base "CO-BP"
* xyz 0 1
C 0.000 0.000 0.000
O 1.13 0.000 0.000
*
138 5 Running Typical Calculations
$new_job
! RHF CCSD(T) TZVPP
%id "educt"
%base "CO-CCSDT"
* xyzfile 0 1 CO-BP.XYZ
# ---------------
# Now fragment 3: H2CO opt at BP/SV(P) then single point CCSD(T)
# ---------------
$new_job
! BP SV(P) TightSCF Opt PModel
%base "H2CO-BP"
* int 0 1
C 0 0 0 0 0 0
O 1 0 0 1.2 0 0
H 1 2 0 1.1 120 0
H 1 2 3 1.1 120 180
*
$new_job
! RHF CCSD(T) TZVPP
%id "product"
%base "H2CO-CCSDT"
* xyzfile 0 1 H2CO-BP.XYZ
NOTE:10
• For each new fragment, the guess has to be explicitly specified since otherwise the program will try to read it
from the previous job and this is not a good idea since the number and identity of atoms does not match
• Note that “%id” is only given for the CCSD(T) jobs. This ensures that only these energies will occur later in
the calculation of the reaction energies.
ORCA features a module to perform TD-DFT and single-excitation CI (CIS). The module works with either closed
shell (RHF or RKS) or unrestricted (UHF or UKS) reference wavefunctions. For DFT models the module automatically
chooses TD-DFT and for HF wavefunctions the CIS model. If the RI approximation is used in the SCF part it will
also be used in the CIS/TD-DFT calculation. A detailed documentation is provided in section 6.14.
In its simplest form it is only necessary to provide the number of roots sought:
10
This job produces a CCSD(T) reaction energy – not corrected for ZPE – of -3.7 kcal/mol; B3LYP gets -11.2
kcal/mol – a surprisingly large deviation - and B2PLYP predicts -6.1 kcal/mol which is certainly in the ballpark)
5.5 Excited States with CIS, CIS(D), ROCIS and TD-DFT 139
%tddft nroots 8
maxdim 64
triplets true
end
* int 0 1
C(1) 0 0 0 0.00 0.0 0.00
O(2) 1 0 0 1.20 0.0 0.00
H(3) 1 2 0 1.08 120 0.00
H(3) 1 2 3 1.08 120 180.00
*
The MaxDim parameter controls the maximum number of expansion vectors in the iterative solution of the CI
equations. It is wise to choose it as a multiple of the number of roots sought. The default is the smallest possible
choice. The triplets parameter is only valid for closed shell references. If chosen as true the program will also determine
the triplet excitation energies in addition to the singlets.
In principle X-ray absorption spectra are ‘normal’ absorption spectra that are just taken in a special high-energy
wavelength range. Due to the high energy of the radiation employed (several thousand eV), core-electrons rather
than valence electrons are excited. This has two consequences: a) the method becomes element specific because the
core-level energies divide rather cleanly into regions that are specific for a given element. b) the wavelength of the
radiation is so short that higher-order terms in the expansion of the light-matter interaction become important. Most
noticeably, quadrupole intensity becomes important.
X-ray absorption spectra can be generally divided into three regions: a) the pre-edge that corresponds to transitions
of core electrons into low lying virtual orbitals that lead to bound states. b) the rising edge that corresponds to
excitations to high-lying states that are barely bound, and c) the extended X-ray absorption fine structure region
(EXAFS) that corresponds to electrons being ejected from the absorber atom and scattered at neighbouring atoms.
With the simple TD-DFT calculations described here, one focuses the attention on the pre-edge region. Neither
the rising edge nor the EXAFS region are reasonably described with standard electronic structure methods and no
comparison should be attempted. In addition, these calculations are restricted to K-edges as the calculation of L-edges
is much more laborious and requires a detailed treatment of the core hole spin orbit coupling.
It is clearly hopeless to try to calculate enough states to cover all transitions from the valence to the pre-edge region.
Hence, instead one hand-selects the appropriate donor core orbitals and only allows excitations out of these orbitals
into the entire virtual space. This approximation was justified for example in DeBeer-George, Petrenko and Neese
(2008), J. Phys. Chem., 112, 12936. One should distinguish two situations: First, the core orbital in question may be
well isolated and unambiguously defined. This is usually the case for metal 1s orbitals if there is only one metal of
the given type in the molecule. Secondly, there may be several atoms of the same kind in the molecule and their
core orbitals form the appropriate symmetry adapted linear combinations dictated by group theory. In this latter
case special treatment is necessary: The sudden approximation dictates that the excitations occurs from a local core
orbital. In previous versions of the program you had to manually localize the core holes. In the present version there
is an automatic procedure that is described below.
140 5 Running Typical Calculations
A typical example is TiCl4 . If we want to calculate the titanium K-edge, the following input is appropriate:
* int 0 1
Ti 0 0 0 0 0 0
Cl 1 2 3 2.15 0 0
Cl 1 2 3 2.15 109.4712 0
Cl 1 2 3 2.15 109.4712 120
Cl 1 2 3 2.15 109.4712 240
*
NOTE:
• The absolute transition energies from such calculations are off by a few hundred electron volts due to the
shortcomings of DFT. The shift is constant and very systematic for a given element. Hence, calibration is
possible and has been done for a number of edges already. Calibration depends on the basis set!
• Quadrupole contributions (and magnetic dipole contributions) have been invoked with DoQuad true, which is
essential for metal edges. For ligand edges, the contributions are much smaller.
• OrbWin is used to select the single donor orbital (in this case the metal 1s). The LUMO (45) and last orbital in
the set (174) are selected automatically if ‘-1’ is given. This is different from previous program versions where
the numbers had to be given manually.
------------------------------------------------------------------------------------------------------
COMBINED ELECTRIC DIPOLE + MAGNETIC DIPOLE + ELECTRIC QUADRUPOLE SPECTRUM (origin adjusted)
------------------------------------------------------------------------------------------------------
State Energy Wavelength D2 M2 Q2 D2+M2+Q2 D2/TOT M2/TOT Q2/TOT
(cm-1) (nm) (*1e6) (*1e6)
------------------------------------------------------------------------------------------------------
....
This section contains the relevant output since it combines electric dipole, electric quadrupole and magnetic dipole
transition intensities into the final spectrum. Importantly, there is a gauge issue with the quadrupole intensity: the
results depend on the where the origin is placed. We have proposed a minimization procedure that guarantees the
fastest possible convergence of the multipole expansion:
DeBeer-George, S.; Petrenko, T.; Neese, F.: “Time-dependent density functional calculations of ligand K-edge X-ray
absorption spectra“, Inorg. Chim. Acta, (2008), 361, 965
5.5 Excited States with CIS, CIS(D), ROCIS and TD-DFT 141
Now, let us turn to the Cl K-edge. Looking at the output of the first calculation, we have:
----------------
ORBITAL ENERGIES
----------------
And looking at the energy range or the orbital composition, we find that orbitals 1 through 4 are Cl 1s-orbitals. They
all have the same energy since they are essentially non-interacting. Hence, we can localize them without invalidating
the calculation. To this end, you can invoke the automatic localization for XAS which modifies the input to:
* int 0 1
Ti 0 0 0 0 0 0
Cl 1 2 3 2.15 0 0
Cl 1 2 3 2.15 109.4712 0
Cl 1 2 3 2.15 109.4712 120
Cl 1 2 3 2.15 109.4712 240
*
142 5 Running Typical Calculations
• This localizes the orbitals 1 through 4 of operator 0 (the closed shell) and then allows excitations (arbitrarily)
from core hole 1 only. You could choose any of the three other localized 1s orbitals instead without changing
the result. You could even do all four core holes simultaneously (they produce identical spectra) in which case
you have the entire ligand K-edge intensity and not just the one normalized to a single chlorine (this would be
achieved with OrbWin[0] = 1,4,-1,-1).
• If you have a spin unrestricted calculation, you need to give the same XASLoc and OrbWin information for the
spin-down orbitals as well.
Quite nice results have been obtained for a number of systems in this way. For example, check:
Ray, K.; DeBeer-George, S.; Solomon, E.I.; Wieghardt, K.; Neese, F. (2007) Description of the Ground State
Covalencies of the Bis(dithiolato)Transition Metal Complexes Using X-ray Absorption Spectral and Time-Dependent-
Density-Functional Studies, Chem. Eur. Journal,13, 2753.
For CIS and TD-DFT the program can calculate analytic gradients. With the help of the IRoot keyword, a given
state can be selected for geometry optimization. Note however, that if two states cross during the optimization it may
fail to converge or fail to converge to the desired excited state!
%cis NRoots 1
IRoot 1
end
* int 0 1
C(1) 0 0 0 0.00 0.0 0.00
O(2) 1 0 0 1.20 0.0 0.00
H(3) 1 2 0 1.08 120 0.00
H(3) 1 2 3 1.08 120 180.00
*
Note that this example converges to a saddle point as can be verified through a numerical frequency calculation
(which is also possible with CIS). The CIS relaxed density matrix is available from such gradient runs (MyJob.cisp
when using the KeepDens keyword) and can be used for various types of analysis. The COSMO model is not yet
implemented into the CIS gradient code. Note that the frozen core option is available starting from version 2.8.0.
For CIS (and also for perturbatively corrected double hybrid functionals) the program can calculate a doubles
correction to the singles-only excited states. The theory is due to Head-Gordon and co-workers.
NOTE:
• The cost of the (D) correction is O(N5 ) and therefore comparable to RI-MP2. Since there are quite a few things
more to be done for (D) compared to RI-MP2, expect the calculations to take longer. In the most elementary
implementation the cost is about two times the time for RI-MP2 for each root.
• The (D) correction is compatible with the philosophy of the double hybrid density functionals and should
be used it these functionals are combined with TD-DFT. The program takes this as the default but will not
enforce it.
• In our implementation it is only implemented together with the RI approximation and therefore you need to
supply an appropriate (‘/C’) fitting basis.
• The program will automatically put the RI-MP2 module into operation together with the (D) correction. This
will result in the necessary integrals becoming available to the CIS module.
In addition to the CIS/TD-DFT description of excited states, ORCA features the orca rocis module to perform
configuration interaction with single excitations calculations using a restricted open-shell Hartree–Fock (ROHF)
reference. It can be used to calculate excitation energies, absorption intensities and CD intensities. In general, ROCIS
calculations work on restricted open-shell HF reference functions but in this implementation it is possible to enter the
calculations with RHF (only for closed shell molecules) or UHF reference functions as well. If the calculation starts
with an UHF/UKS calculation, it will automatically produce the quasi-restricted orbitals which will then be used for
the subsequent ROCIS calculations. Note that if the reference function is a RHF/RKS function the method produces
the CIS results. The module is invoked by providing the number of roots sought in the %rocis block of the input
file:
! SVP TightSCF
%rocis NRoots 2
MaxDim 20
end
* xyz -2 2
Cu 0.00 0.00 0.00
Cl 2.25 0.00 0.00
Cl -2.25 0.00 0.00
Cl 0.00 2.25 0.00
Cl 0.00 -2.25 0.00
*
In this example the MaxDim parameter is given in addition to the number of roots to be calculated. It controls the
maximum dimension of the expansion space in the Davidson procedure that is used to solve the CI problem.
144 5 Running Typical Calculations
The methods described in the previous section are all based on the single excitation framework. For a more accurate
treatment, double excitations should also be considered. The equation of motion (EOM) CCSD method (and the
closely related family of linear response CC methods) provides an accurate way of describing excited states based
on singles and doubles excitations within the coupled cluster framework. In this chapter, the typical usage of the
EOM-CCSD routine will be described, along with a short list of its present capabilities. A detailed description will be
given in 6.16.
The simplest way to call for an EOM calculation is via the usage of the EOM-CCSD keyword, together with a
specification of the desired number of roots:
%mdci
nroots 9
end
*xyz 0 1
C 0.016227 -0.000000 0.000000
O 1.236847 0.000000 -0.000000
H -0.576537 0.951580 -0.000000
H -0.576537 -0.951580 -0.000000
*
The above input will call the EOM routine with default settings. The main output is a list of excitation energies
augmented with some further state specific data. For the above input the following output is obtained:
----------------
EOM-CCSD RESULTS
----------------
5.6.2 Capabilities
At present, the EOM routine is capable to run excited state calculations for closed shell systems using an RHF
reference function. It can be used for serial and parallel calculations. For the time being, the most useful information
provided is the list of excitation energies. Wave function parameters are of little use in themselves, but they are
essential for excited state density calculations and property evaluations. These latter functions will be available in
future, along with many other additional capabilities.
146 5 Running Typical Calculations
5.7.1.1 Introduction
ORCA contains a multireference correlation module (configuration interaction, MR-CI, and perturbation theory,
MR-PT). Although there has been quite a bit of experience with it, this part of the program is still somewhat hard to
use and requires patience and careful testing before the results should be accepted. While we try to make your life as
easy as possible, you have to be aware that ultimately any meaningful multireference ab initio calculation requires
more insight and planning from the user side than standard SCF or DFT calculation or single reference correlation
approaches like MP2 – so don’t be fainthearted! You should also be aware that with multireference methods it is very
easy to let a large computer run for a long time and still to not produce a meaningful result – your insight is a key
ingredient to a successful application! Below a few examples illustrate some basic uses of the orca mrci module.
5.7.1.2 RI-approximation
First of all, it is important to understand that the default mode of the MR-CI module in its present implementation
performs a full integral transformation from the AO to the MO basis. This becomes very laborious and extremely
memory intensive beyond approximately 200 MOs that are included in the CI. Alternatively, one can construct
molecular electron-electron repulsion integrals from the resolution of the identity (RI) approximation. Thus a
meaningful auxiliary basis set must be provided if this option is chosen. We recommend the fitting bases developed by
the TurboMole developers for MP2 calculations. These give accurate transition energies; however, the error in the
total energies is somewhat higher and may be on the order of 1 mEh or so. Check IntMode to change the default
mode for the integral transformation. Note that in either way, the individually selecting MRCI module requires to
have all integrals in memory which sets a limit on the size of the molecule that can be studied.
Secondly, it is important to understand that the MR-CI module is of the individually selecting type. Thus, only those
excited configuration state functions (CSFs) which interact more strongly than a given threshold (Tsel ) with the 0th
order approximations to the target states will be included in the variational procedure. The effect of the rejected
CSFs is estimated using second order perturbation theory. The 0th order approximations to the target states are
obtained from the diagonalization of the reference space configurations. A further approximation is to reduce the size
of this reference space through another selection – all initial references which contribute less than a second threshold
(Tpre ) to the 0th order states are rejected from the reference space.
One important aspect concerns the single excitations. If the reference orbitals come from a CASSCF calculation the
matrix elements between the reference state and the single excitations vanishes and the singles will not be selected.
However, they contribute to fourth and higher orders in perturbation theory and may be important for obtaining
smooth potential energy surfaces and accurate molecular properties. Hence, the default mode of the MRCI module
requires to include all of the single excitations via the flag AllSingles =true. This may lead to lengthy computations
if the reference spaces becomes large!
5.7 Multireference Configuration Interaction and Pertubation Theory 147
Third, the reference spaces in the MR-CI module can be of the complete active space (CAS(n-electrons,m-orbitals))
or restricted active space (RAS, explained later) type. It is important to understand that the program uses the
orbitals around the HOMO-LUMO gap as provided by the user to build up the reference space! Thus, if the orbitals
that you want to put in the active space are not coming “naturally” from your SCF calculation in the right place you
have to reorder them using the “moread” and “rotate” features together with the NoIter directive. To select the
most meaningful and economic reference space is the most important step in a multireference calculation. It always
requires insight from the user side and also care and, perhaps, a little trial and error.
Fourth, it is important to understand that CI type methods are not size consistent. Practically speaking the energy of
the supermolecule A-B with noninteracting A and B fragments is not equal to the energies of isolated A and islotated
B. There are approximate ways to account for this (ACPF, AQCC and CEPA methods) but the effect will be
present in the energies, the more so the more electrons are included in the treatment. The same is not true for the
perturbation theory based methods which are size consistent as long as the reference wavefunction is.
5.7.1.7 Performance
There are many flags that control the performance of the MR-CI program. Please refer to chapter 0 for a description of
possible flags, thresholds and cut-offs. The most important thresholds are Tsel and Tpre and for SORCI also Tnat .
For some methods, like ACPF, it is possible to compare the performance of the MRCI module with the performance
of the MDCI module. The MDCI module has been written to provide optimum performance if no approximations are
introduced. The MRCI module has ben written more with the idea of flexibility rather than the idea of performance.
Let us compare the performance of the two programs in a slightly nontrivial calculation – the zwitter-ionic form of
serine. We compare the selecting MRCI approach with the approximation free MDCI module. The molecular size is
such that still all four index integrals can be stored in memory.
Table 5.9: Comparison of the performance of the MRCI and MDCI modules for a single reference calculation with the
bn-ANO-DZP basis set on the zwitter-ionic form of serine (14 atoms, 133 basis functions).
Module Method Tsel (Eh) Time (sec) Energy (Eh)
MRCI ACPF 10−6 3277 -397.943250
148 5 Running Typical Calculations
The selecting ACPF calculation selects about 15% of the possible double excitations and solves a secular problem
of size ≈ 360,000 CSFs. The MDCI module ACPF calculation optimizes approximately 2.5 million wavefunction
amplitudes — and this is not a large molecule or a large basis set! Despite the fact that the MDCI module makes no
approximation, it runs twice as fast as the selected MRCI module and an estimated 50 times faster than the unselected
MRCI module! This will become even more pronounced for the larger and more accurate basis sets that one should
use in such calculations anyways. The error of the selection is on the order of 3 mEh or 2 kcal/mol in the total energy.
One can hope that at least part of this error cancels upon taking energy differences.11 The more rigorous CCSD
calculation takes about a factor of two longer than the ACPF calculation which seems reasonable. The triples add
another factor of roughly 2 in this example but this will increase for larger calculations since it has a steeper scaling
with the system size. The ACPF energy is intermediate between CCSD and CCSD(T) which is typical — ACPF
overshoots the effects of disconnected quadruples which partially compensates for the neglect of triples.
These timings will strongly depend on the system that you run the calculation on. Nevertheless, what you should take
from this example are the message that if you can use the MDCI module, do it.
The MDCI module can avoid a full integral transformation for larger systems while the MRCI module can use selection
and the RI approximation for larger systems. Both types of calculation will become very expensive very quickly!
Approximate MDCI calculations are under development.
5.7.1.8 Symmetry
The MRCI program really takes advantage of symmetry adapted orbitals. In this case the MRCI matrix can be blocked
according to irreducible representations and be diagonalized irrep by irrep. This is a big computational advantage and
allows one to converge on specific excited states much more readily than if symmetry is not taken into account.
newblock 1 *
nroots 8
refs cas(4,4) end
end
Then the ‘*’ indicates that this is to be repeated in each irrep of the point group. Thus, in C2v the program would
calculate 8 singlet roots in each of the four irreps of the C2v point group thus leading to a total of 32 states.
Alternatively, you can calculate just a few roots in the desired irreps:
11
Depending on whether one wants to take a pessimistic or an optimistic view one could either say that this result
shows what can be achieved with a code that is dedicated to a single determinant reference. Alternatively one
could (and perhaps should) complain about the high price one pays for the generality of the MRCI approach. In
any case, the name of the game would be to develop MR approaches that are equally efficient than single reference
approaches. This can probably not be achieved in an individually selecting fashion but is quite feasible – though
complicated – using the concept of internal contraction. Presently only the MOLPRO program features an MRCI
implementation that comes close to this goal while still not being applicable to larger molecules. The only MR
method (other than the individually selecting approaches) that is applicable to larger molecules is the internally
contracted second order perturbation theory (CASPT2) as implemented in the MOLCAS program.
5.7 Multireference Configuration Interaction and Pertubation Theory 149
newblock 1 0
nroots 3
refs cas(4,4) end
end
newblock 1 2
nroots 5
refs cas(4,4) end
end
newblock 3 1
nroots 1
refs cas(4,4) end
end
In this example, we would calculate 3 singlet roots in the irrep ‘0’ (which is A1 ), then five roots in irrep ‘2’ (which is
B1 ) and then 1 triplet root in irrep 1 (which is B2 ).
Obviously, the results with and without symmetry will differ slightly. This is due to the fact that without symmetry the
reference space will contain references that belong to ‘wrong’ symmetry but will carry with them excited configurations
of ‘right’ symmetry. Hence, the calculation without use of symmetry will have more selected CSFs and hence a slightly
lower energy. This appears to be unavoidable. However, the effects should not be very large for well designed reference
spaces since the additional CSFs do not belong to the first order interacing space.
Perhaps, the most important use of the MR-CI module is for the calculation of transition energies and optical spectra.
Let us first calculate the first excited singlet and triplet state of the formaldehyde molecule using the MR-CI method
together with the Davidson correction to approximately account for the effect of unlinked quadruple substitutions.
We delibaratly choose a somewhat small basis set for this calculation which is already reasonable since we only look at
a valence excited state and want to demonstrate the principle.
Suppose that we already know from a ground state calculation that the HOMO of H2 CO is an oxygen lone pair
orbitals and the LUMO the π ∗ MO. Thus, we want to calculate the singlet and triplet n→ π ∗ transitions and nothing
else. Consequently, we only need to correlate two electrons in two orbitals suggesting a CAS(2,2) reference space.
tsel 1e-6
tpre 1e-2
MaxMemInt 256
MaxMemVec 32
IntMode FullTrafo
AllSingles true
Solver Diag
# ground state 1A1
NewBlock 1 0
NRoots 1
Excitations cisd
Refs CAS(2,2) end
End
# HOMO LUMO transition 1A2
NewBlock 1 1
NRoots 1
Excitations cisd
Refs CAS(2,2) end
End
# HOMO LUMO triplet transition 3A2
NewBlock 3 1
NRoots 1
Excitations cisd
Refs CAS(2,2) end
end
end
* int 0 1
C 0 0 0 0.000000 0.000 0.000
O 1 0 0 1.200371 0.000 0.000
H 1 2 0 1.107372 121.941 0.000
H 1 2 3 1.107372 121.941 180.000
*
This input – which is much more than what is really required - needs some explanations: First of all, we choose a
standard RHF calculation with the SVP basis set and we assign the SV/C fitting basis although it is not used in
the SCF procedure at all. In the %mrci block all details of the MR-CI procedure are specified. First, EWin (%method
frozencore fc ewin) selects the MOs within the given orbital energy range to be included in the correlation treatment.
The CIType variable selects the type of multireference treatment. Numerous choices are possible and MRCI is just the
one selected for this application.
• NOTE: The CIType statement selects several default values for other variables. So it is a very
good idea to place this statement at the beginning of the MR-CI block and possibly overwrite the
program selected defaults later . If you place the CIType statement after one of the values which it selects
by default your input will simply be overwritten!
5.7 Multireference Configuration Interaction and Pertubation Theory 151
The variables EUnselOpt and DavidsonOpt control the corrections to the MR-CI energies. EUnselOpt specifies the way
in which the MR-CI energies are extrapolated to zero threshold TSel . Here we choose a full MR-MP2 calculation of the
missing contributions to be done after the variational step, i.e. using the relaxed part of the reference wavefunction as
a 0th order state for MR-PT. The DavidsonOpt controls the type of estimate made for the effect of higher substitutions.
Again, multiple choices are possible but the most commonly used one (despite some real shortcomings) is certainly
the choice Davidson1. The flag UseIVOs instructs the program to use “improved virtual orbitals”. These are virtual
orbitals obtained from a diagonalization of the Fock operator from which one electron has been removed in an averaged
way from the valence orbitals. Thus, these orbitals “see” only a N − 1 electron potential (as required) and are not
as diffuse as the standard virtual orbitals from Hartree-Fock calculations. If you input DFT orbitals in the MR-CI
moldule (which is perfectly admittable and also recommened in some cases, for example for transition metal complexes)
then it is recommended to turn that flag off since the DFT orbitals are already o.k. in this respect. The two thresholds
Tsel and Tpre are already explained above and represent the selection criteria for the first order interacting space
and the reference space respectively. Tsel is given in Hartree units and refers to the second order MR-MP2 energy
contribution from a given excited CSF. 10−6 Eh is a pretty good value. Reliable results for transition energies start
with ≈10−5 ; however, the total energy is converging pretty slowly with this parameter and this is one of the greatest
drawbacks of individually selecting CI procedures! (see below). Tpre is dimensionless and refers to the weight of a
given initial reference after diagonalization of the the given initial reference space (10−4 is a pretty good value and
there is little need to go much lower. Aggressive values such as 10−2 only select the truly leading configurations for
a given target state which can be time saving. Intermediate values are not really recommended). The parameters
MaxMemInt and MaxMemVec tell the program how much memory (in MB) it is allowed to allocate for integrals and for
trial and sigma-vectors respectively.
The flag IntMode tells the program to perform a full integral transformation. This is possible for small cases with less
than, say, 100–200 MOs. In this case that it is possible it speeds up the calculations considerably. For larger molecules
you have to set this flag to RITrafo which means that integrals are recomputed on the fly using the RI approximation
which is more expensive but the only way to do the calculation. To switch between the possible modes use:
For small molecules or if high accuracy in the total energies is required it is much better to use the exact four index
transformation. The limitations are that you will run out of disk space or main memory with more than ca. 200–300
MOs.
The variable Solver can be diag (for Davidson type diagonalization) or DIIS for multirrot DIIS type treatments.
For CI methods, the diag solver is usually preferable. For methods like ACPF that contain nonlinear terms, DIIS is
imperative.
Next in the input comes the definition of what CI matrices are to be constructed and diagonalized. Each multiplicity
defines a block of the CI matrix which is separately specified. Here we ask for two blocks – singlet and triplet. The
general syntax is:
152 5 Running Typical Calculations
Now that all input is understood let us look at the outcome of this calculation:
The first thing that happens after the SCF calculation is the preparation of the frozen core Fock matrix and the
improved virtual orbitals by the program orca ciprep. From the output the energies of the IVOs can be seen. In
this case the LUMO comes down to –8.2 eV which is much more reasonable than the SCF value of +3. . . . eV.
Concomitantly, the shape of this MO will be much more realistic and this important since this orbital is in the
reference space!
------------------------------------------------------------------------------
ORCA CI-PREPARATION
------------------------------------------------------------------------------
done
Forming internal density ... done
Forming Fock matrix/matrices ...
Nuclear repulsion ... 31.371502
Core repulsion ... 31.371502
One-electron energy ... -114.942082
Fock-energy ... -94.993430
Final value ... -73.596255
done
Modifying virtual orbitals ...
Last occupied MO ... 7
Total number of MOs ... 38
Number of virtual MOs ... 30
Doing diagonalization with symmetry
The improved virtual eigenvalues:
0: -0.2955 au -8.041 eV 2- B1
5.7 Multireference Configuration Interaction and Pertubation Theory 153
1: -0.0701 au -1.908 eV 6- A1
2: -0.0176 au -0.480 eV 3- B2
3: 0.0064 au 0.175 eV 7- A1
4: 0.2922 au 7.951 eV 8- A1
5: 0.2948 au 8.021 eV 3- B1
6: 0.3836 au 10.439 eV 4- B2
7: 0.4333 au 11.790 eV 9- A1
8: 0.4824 au 13.128 eV 5- B2
9: 0.5027 au 13.680 eV 10- A1
10: 0.7219 au 19.643 eV 11- A1
11: 0.8351 au 22.724 eV 4- B1
12: 0.9372 au 25.501 eV 6- B2
13: 1.0265 au 27.932 eV 1- A2
14: 1.1141 au 30.317 eV 12- A1
15: 1.2869 au 35.017 eV 5- B1
16: 1.4605 au 39.743 eV 7- B2
...
done
Transforming integrals ... done
Storing passive energy ... done ( -73.59625452 Eh)
Transforming internal FI ... done
.... done with the Frozen Core Fock matrices
The next step is to transform the electron-electron repulsion integrals into the MO basis:
------------------------------
PARTIAL COULOMB TRANSFORMATION
------------------------------
IBATCH = 1 of 2
IBATCH = 2 of 2
Closing buffer JAO ( 0.00 GB; CompressionRatio= 5.20)
TOTAL TIME for half transformation ... 0.324 sec
AO-integral generation ... 0.118 sec
Half transformation ... 0.059 sec
J-integral sorting ... 0.146 sec
Collecting buffer JAO
-------------------
FULL TRANSFORMATION
-------------------
Processing MO 10
Processing MO 20
Processing MO 30
full transformation done
Number of integrals made ... 222111
Number of integrals stored ... 59070
Timings:
Time for first half transformation ... 0.326 sec
Time for second half transformation ... 0.160 sec
Total time ... 0.516 sec
Total time ... 0.516 sec This will result in a few additional disk files required by orca mrci. The program then tells
you which multiplicities will be treated in this MRCI run:
------------------
CI-BLOCK STRUCTURE
------------------
===========
CI BLOCK 1
===========
Multiplicity ... 1
Irrep ... 0
Number of reference defs ... 1
Reference 1: CAS(2,2)
===========
CI BLOCK 2
===========
Multiplicity ... 1
Irrep ... 1
Number of reference defs ... 1
Reference 1: CAS(2,2)
5.7 Multireference Configuration Interaction and Pertubation Theory 155
===========
CI BLOCK 3
===========
Multiplicity ... 3
Irrep ... 1
Number of reference defs ... 1
Reference 1: CAS(2,2)
--------------------------------------------------------------------
-------------------- ALL SETUP TASKS ACCOMPLISHED ------------------
-------------------- ( 1.512 sec) ------------------
--------------------------------------------------------------------
Now that all the setup tasks have been accomplished the MRCI calculation itself begins.
###################################################
# #
# M R C I #
# #
# TSel = 1.000e-06 Eh #
# TPre = 1.000e-02 #
# TIntCut = 1.000e-10 Eh #
# Extrapolation to unselected MR-CI by full MP2 #
# DAVIDSON-1 Correction to full CI #
# #
###################################################
---------------------
INTEGRAL ORGANIZATION
---------------------
***************************************
* CI-BLOCK 1 *
***************************************
156 5 Running Typical Calculations
In the first step, the reference space is diagonalized. From this CI, the most important configurations are selected
with Tpre:
------------------
REFERENCE SPACE CI
------------------
****Iteration 0****
Lowest Energy : -113.779221544551
Maximum Energy change : 113.779221544551 (vector 0)
Maximum residual norm : 0.000000000000
N(ref-CFG)=1 N(ref-CSF)=1
****Iteration 0****
Lowest Energy : -113.778810020485
Maximum Energy change : 113.778810020485 (vector 0)
Maximum residual norm : 0.000000000000
In this case, the CAS space only has 2 correctly symmetry adapted CSFs one of which (the closed shell determinant)
is selected. In general, larger CAS spaces usually carry around a lot of unnecessary CSFs which are not needed for
anything and then the selection is important to reduce the computational effort. The result of the second reference
space CI is printed:
----------
CI-RESULTS
----------
Energy is the total energy in Hartree. In the present case we can compare to the SCF energy -113.778810021 Eh and
find that the reference space CI energy is identical, as it has to be since the lowest state coincides with the reference
space. RefWeight gives the weight of the reference configurations in a CI state. This is 1.0 in the present case since
there were only reference configurations. The number 1.000 is the weight of the following configuration in the CI
vector. The description of the configuration h---h---[20]p---p--- is understood as follows:12 The occupation of the
active orbitals is explicitly given in square brackets. Since the HOMO orbitals is number 7 from the SCF procedure,
this refers to MOs 7 and 8 in the present example since we have two active orbitals. The 2 means doubly occupied,
the 0 means empty. Any number (instead of ---) appearing after an h gives the index of an internal orbital in which a
hole is located. Simarly, any number after a p gives the index of an virtual (external) MO where a particle is located.
Thus h---h---[20] is a closed shell configuration and it coincides with the SCF configuration—this was of course
to be expected. The second root (in CI-Block 2) h---h---[11] by comparison refers to the configuration in which
one electron has been promoted from the HOMO to the LUMO and is therefore the desired state that we wanted to
calculate. Things are happy therefore and we can proceed to look at the output.
The next step is the generation of excited configurations and their selection based on Tsel:
------------------------------
MR-PT SELECTION TSel=1.00e-006
------------------------------
------------------------------
MR-PT SELECTION TSel= 1.00e-06
------------------------------
Selection results:
Total number of generated configurations: 2814
12
Note that for printing we always sum over all linearly independent spin couplings of a given spatial configuration and
only print the summed up weight for the configuration rather than for each individual CSF of the configuration.
158 5 Running Typical Calculations
Here, the program loops through classes of excitations. For each excitation it produces the excited configurations
(CFGs) and from it the linearly independent spin functions (CSFs) which are possible within the configuration. It
then calculates the interaction with the contracted 0th order roots and includes all CSFs belonging to a given CFG in
the variational space if the largest second order perturbation energy is larger or equal to Tsel. In the present case
≈136,000 CSFs are produced of which 25% are selected. For larger molecules and basis sets it is not uncommon to
produce 109 –1010 configurations and then there is no choice but to select a much smaller fraction than 20%. For your
enjoyment, the program also prints the total energies of each state after selection:
You can ignore this output if you want. In cases that the perturbation procedure is divergent (not that uncommon!)
the total energies look strange—don’t worry—the following variational calculation is still OK. The second order
perturbation energy is here divided into a selected part E2(sel) and the part procedure by the unselected configurations
E2(unsel). Depending on the mode of EUnselOpt this value may already be used later as an estimate of the energetic
contribution of the unselected CSFs. 13
Now we have ≈4,200 CSFs in the variational space of CI block 1 and proceed to diagonalize the Hamiltonian over
these CSFs using a Davidson or DIIS type procedure:
------------------------
DAVIDSON-DIAGONALIZATION
------------------------
13
In this case the maximum overlap of the 0th order states with the final CI vectors is computed and the perturbation
energy is added to the “most similar root”. This is of course a rather crude approximation and a better choice is
to recomputed the second order energy of the unselected configurations rigorously as is done with EUnselOpt =
FullMP2.
5.7 Multireference Configuration Interaction and Pertubation Theory 159
****Iteration 0****
Size of expansion space: 2
Lowest Energy : -113.854262408162
Maximum Energy change : 113.854262408162 (vector 0)
Maximum residual norm : 1.004640962238
****Iteration 1****
Size of expansion space: 3
Lowest Energy : -114.076119460817
Maximum Energy change : 0.221857052655 (vector 0)
Maximum residual norm : 0.028974632398
****Iteration 2****
Size of expansion space: 4
Lowest Energy : -114.085249547769
Maximum Energy change : 0.009130086952 (vector 0)
Maximum residual norm : 0.001957827970
****Iteration 3****
Size of expansion space: 5
Lowest Energy : -114.086014164840
Maximum Energy change : 0.000764617071 (vector 0)
Maximum residual norm : 0.000167800384
****Iteration 4****
Size of expansion space: 6
Lowest Energy : -114.086071121272
Maximum Energy change : 0.000056956432 (vector 0)
Maximum residual norm : 0.000011388989
****Iteration 5****
Size of expansion space: 7
Lowest Energy : -114.086076153851
Maximum Energy change : 0.000005032579 (vector 0)
Maximum residual norm : 0.000001069291
****Iteration 6****
Size of expansion space: 8
Lowest Energy : -114.086076506777
Maximum Energy change : 0.000000352926 (vector 0)
The procedure converges on all roots simultaneously and finishes after six iterations which is reasonable. Now the
program calculates the Davidson correction (DavidsonOpt) which is printed for each root.
160 5 Running Typical Calculations
Already in this small example the correction is pretty large, ca. 27 mEh for the ground state (and ≈ 36 mEh for the
excited state, later in the output). Thus, a contribution of ≈ 9 mEh = 0.25 eV is obtained for the transition energy
which is certainly significant. Unfortunately, the correction becomes unreliable as the reference space weight drops or
the number of correlated electrons becomes large. Here 0.912 and 0.888 are still OK and the system is small enough
to expect good results from the Davidson correction.
The next step is to estimate the correction for the unselected configurations:
In the present case this is below 1 mEh and also very similar for all three states such that it is not important for the
transition energy.
----------
CI-RESULTS
----------
The final ground state energy is -114.113097002 which is an estimate of the full CI energy in this basis set. The
leading configuration is still the closed shell configuration with a weight of ≈ 91%. However, a double excitation
outside the reference space contributes some 1%. This is the excitation MO6,MO6 →LUMO,LUMO. This indicates
that more accurate results are expected once MO6 is also included in the reference space (this is the HOMO-1). The
excited state is dominated by the HOMO-LUMO transition (as desired) but a few other single- and double- excitations
also show up in the final CI vector.
Now that all CI vectors are known we can order the states according to increasing energy and print (vertical) transition
energies:
5.7 Multireference Configuration Interaction and Pertubation Theory 161
-------------------
TRANSITION ENERGIES
-------------------
This result is already pretty good and the transition energies are within ≈ 0.1 eV of their experimental gas phase
values (≈ 3.50 and ≈ 4.00 eV) and may be compared to the CIS values of 3.8 and 4.6 eV which are considerably in
error.
In the next step the densities and transition densities are evaluated and the absorption and CD spectra are calculated
(in the dipole length formalism) for the spin-allowed transitions together with state dipole moments:
------------------------------------------------------------------------------------------
ABSORPTION SPECTRUM
------------------------------------------------------------------------------------------
States Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (D**2) (D) (D) (D)
------------------------------------------------------------------------------------------
0( 0)-> 0( 1) 1 32589.8 306.8 0.000000000 0.00000 -0.00000 0.00000 0.00000
------------------------------------------------------------------------------
CD SPECTRUM
------------------------------------------------------------------------------
States Energy Wavelength R*T RX RY RZ
(cm-1) (nm) (1e40*sgs) (au) (au) (au)
------------------------------------------------------------------------------
0( 0)-> 0( 1) 1 32589.8 306.8 0.00000 -0.00000 -0.00000 1.18711
------------------------------------------------------------------------------
STATE DIPOLE MOMENTS
------------------------------------------------------------------------------
Root Block TX TY TZ |T|
(Debye) (Debye) (Debye) (Debye)
------------------------------------------------------------------------------
0 0 0.00000 -0.00000 2.33244 2.33244
0 2 0.00000 -0.00000 1.45831 1.45831
0 1 0.00000 -0.00000 1.58658 1.58658
Here the transition is symmetry forbidden and therefore has no oscillator strength. The state dipole moment for the
ground state is 2.33 Debye which is somewhat lower than 2.87 Debye from the SCF calculation. Thus, the effect of
correlation is to reduce the polarity consistent with the interpretation that the ionicity of the bonds which is always
overestimated by HF theory is reduced by the correlation. Finally, you also get a detailed population analysis for
each generated state density which may be compared to the corresponding SCF analysis in the preceding part of the
output.
This concludes the initial example on the use of the MR-CI module. The module leaves several files on disk most
of which are not yet needed but in the future will allow more analysis and restart and the like. The .ivo file is a
standard .gbw type file and the orbitals therein can be used for visualization. This is important in order to figure
162 5 Running Typical Calculations
out the identity of the generated IVOs. Perhaps they are not the ones you wanted and then you need to re-run the
MR-CI with the IVOs as input, NoIter and the IVO feature in the new run turned off! We could use the IVOs as
input for a state averaged CASSCF calculation:
%casscf nel 2
norb 2
irrep 0,1,1
mult 1,1,3
nroots 1,1,1
end
If we based a MR-ACPF calculation on this reference space we will find that the calculated transition energies are
slightly poorer than in the MRCI+Q calculation. This is typical of approximate cluster methods that usually require
somewhat larger reference spaces for accurate results. A similar result is obtained with SORCI.
This gives:
5.7 Multireference Configuration Interaction and Pertubation Theory 163
This is systematically 0.4 eV too high. But let us look at the approximate average natural orbital (AANOs) occupation
numbers:
------------------------
AVERAGE NATURAL ORBITALS
------------------------
This shows that there is a low-occupancy orbital (MO6) that has not been part of the reference space. Thus, we try
the same calculation again but now with one more active orbital and two more active electrons:
! moread
%moinp "Test-SYM-MRCI-H2CO.gbw"
%casscf nel 4
norb 3
irrep 0,1,1
mult 1,1,3
nroots 1,1,1
end
Excitations cisd
Refs CAS(4,3) end
End
# HOMO LUMO transition 1A2
NewBlock 1 1
NRoots 1
Excitations cisd
Refs CAS(4,3) end
End
# HOMO LUMO triplet transition 3A2
NewBlock 3 1
NRoots 1
Excitations cisd
Refs CAS(4,3) end
end
This gives:
Which is now fine since all essential physics has been in the reference space. Inspection of the occupation numbers
show that there is no suspicious orbital any more. Note that this is still a much more compact calculation that the
MRCI+Q.
Likewise, we get an accurate result from MRACPF with the extended reference space.
However, the SORCI calculation is much more compact. For larger molecules the difference becomes more and more
pronounced and SORCI or even MRDDCI2 (with or without +Q) maybe the only feasible methods—if at all.
As an example for a relatively accurate MRCI+Q calculation consider the following job which calculates the triplet-
ground and as the first excited singlet states of O2 .
5.7 Multireference Configuration Interaction and Pertubation Theory 165
$new_job
! ano-pVQZ RI-AO cc-pVQZ/JK VeryTightSCF NoPop Conv UseSym KDIIS
! moread
%moinp "O2.mp2nat"
%casscf nel 8
norb 6
irrep 1,0,1
nroots 1,2,1
mult 3,1,1
trafostep ri
switchstep nr
end
* xyz 0 3
O 0 0 0
O 0 0 1.2
*
Note that the linear molecule is run in D2h . This creates a slight problem as the CASSCF procedure necessarily
breaks the symmetry of the 1 ∆ state.
-------------------
TRANSITION ENERGIES
-------------------
These excitation energies are accurate to within a few hundred wavenumbers. Note that the ≈ 200 wavenumber
splitting in the degenerate 1 Delta state is due to the symmetry breaking of the CAS and the individual selection.
Repeating the calculation with the MP2 natural orbitals gives an almost indistinguishable result and a ground state
energy that is even lower than what was found with the CASSCF orbitals. Thus, such natural orbitals (that might
often be easier to get) are a good substitute for CASSCF orbitals and at the same time the symmetry breaking due to
the use of symmetry appears to be difficult to avoid.
-------------------
TRANSITION ENERGIES
-------------------
The logic we are following here is the following: CID minus SCF gives the effect of the doubles; going to CISD gives
the effect of the singles; QCISD(=CCD) minus CID gives the effect of the disconnected quadruples. QCISD minus
QCID gives simultaneously the effect of the singles and the disconnected triples. They are a bit difficult to separate
but if one looks at the singles alone and compares with singles + disconnected triples, a fair estimate is probably
obtained. Finally, QCISD(T) minus QCISD gives the effect of the connected triples. One could of course also use
CCSD instead of QCISD but I felt that the higher powers of T1 obscure the picture a little bit—but this is open to
discussion of course.
First H2 O/TZVPP at its MP2/TZVPP equilibrium geometry (Tpre =10−6 and Tsel =10−9 Eh for the MRCI and
MRACPF calculations):
One observes quite good agreement between single- and multireference approaches. In particular, the contribution of
the disconnected triples and singles is very small. The estimate for the disconnected quadruples is fairly good from
either the multireference Davidson correction or the ACPF and the agreement between CCSD(T) and these MR
methods is 2-3 mEh in the total energy which is roughly within chemical accuracy.
In order to also have an open-shell molecule let us look at NH/TZVPP at its at 1.0 Ångström:
Again, the agreement is fairly good and show that both single- and multiple reference approaches converge to the
same limit.
5.7.5 Thresholds
Now we choose the CO molecule (1.128 Ångström) with the SVP basis set and study the convergence of the results
with respect to the selection threshold. Comparison to high level single-reference approaches is feasible (The SCF
energy is -112.645 946 Eh).
The calculations without connected triples (BD, CCSD, QCISD) are about the best what can be achieved without
explicitly considering triple excitations. The CCSD is probably the best in this class. As soon as connected triples are
included the CCSD(T), QCISD(T) and BD(T) values are close and from experience they are also close to the full CI
values which is then expected somewhere between –112.950 and –112.952 Eh.
Next it is studied how these single reference methods converge with Tsel :
Closed-Shell ACPF:
Tsel Energy (NCSF) Energy (NCSF)
(Eh) AllSingles=true AllSingles=false
TSel=0 -112.943 387 (5671)
TSel=1e-14 -112.943 387 (2543) -112.943 387 (2478)
TSel=1e-10 -112.943 387 (2543) -112.941 023 (2453)
TSel=1e-08 -112.943 387 (2451) -112.937 087 (2346)
TSel=1e-06 -112.943 350 (2283) -112.937 046 (2178)
TSel=1e-05 -112.943 176 (1660) -112.936 821 (1555)
TSel=1e-04 -112.944 039 ( 782) -112.938 381 ( 677)
It is clear that the convergence is erratic if the singles are not automatically included. This is the reason for making
this the default from release 2.6.35 on. In the present case singles will only be selected due to round-off errors since by
Brillouin’s theorem the singles have zero-interaction with the ground state determinant. Thus, for individually selecting
single-reference methods it is a good idea to automatically include all single-excitations in order to get converged
results. The alternative would be a different singles selection procedure which has not yet been developed however.
The selection of doubles appear to converge the total energies reasonably well. It is seen that the selection selects
most CSFs between 10−5 and 10−7 Eh. Already a threshold of 10−6 Eh yields an error of less than 0.1 mEh which is
negligible in relation to reaction energies and the like. Even 10−5 Eh gives an error of less than 0.1 kcal/mol.
We next turn to multireference treatments. Here we want to correlate all valence electrons in all valence orbitals and
therefore a CAS(10,8) is the appropriate choice. We first ask for the converged value of Tpre by using Tsel =10−14
and obtain for MRCI+Q:
Thus, pretty good convergence is obtained for Tpre = 10−4 − 10−6 . Hence 10−4 is the default.
#
# Here we calculate the CO ground state correlation energy with several methods
#
! RHF aug-SVP aug-SV/C RI-MP2 CCSD(T)
%base "1"
* int 0 1
C 0 0 0 0.000000 0.000 0.000
O 1 0 0 1.128 0.000 0.000
*
$new_job
* int 0 1
C 0 0 0 0.000 0.000 0.000
O 1 0 0 1.128 0.000 0.000
*
This job computes at the same time all of the below and demonstrates once more the agreement between consequent
single- and multireference correlation methods
SCF = -112.6523
RI-MP2 = -112.9591
170 5 Running Typical Calculations
CCSD = -112.9604
CCSD(T) = -112.9730
CASSCF(10,8) = -112.7829
MRACPF = -112.9722
For the calculation of energy differences we start again with the reference CCSD(T) calculation; this method is one of
the few which can claim chemical accuracy in practical applications:
The basis set is of course not suitable for quantitative comparison to experimental values. However, this is not the
point here in these calculations which are illustrative in nature. The SVP basis is just good enough to allow for a
method assessment without leading to excessively expensive calculations.
This is now to be compared with the corresponding energy differences computed with some single-reference approaches.
A typical input is (this is a somewhat old-fashioned example – in the present program version you would do a full
valence CASSCF(10,8) or CASSCF(6,6) and invoke the MR-methods with a single keyword):
%base "1"
* xyz 0 1
N 0 0 0
N 0 0 1.0977
*
%method frozencore fc_ewin
end
UseIVOs true
AllSingles true
TSel 1e-14
TPre 1e-05
TNat 0.0
ETol 1e-10
RTol 1e-10
NewBlock 1 *
NRoots 1
Excitations CISD
refs CAS(0,0) end
end
end
$new_job
%base "2"
* xyz 0 4
N 0 0 0
*
%method frozencore fc_ewin
end
With exception is CEPA1 and CEPA3, the results are OK. The reason for the poor performance of these methods is
simply that the formalism implemented is only correct for closed shells – open shells require a different formalism
which we do not have available in the MRCI module (but in the single reference MDCI module). Due to the simple
approximations made in CEPA2 it should also be valid for open shells and the numerical results are in support of
that.
Next we turn to the multireference methods and take a CAS(10,8) reference as for CO in order to correlate all valence
electrons. 14
This test calculation pleasingly shows the high consistency of multireference approaches which all converge more or
less to the same result which must be accurate.
There are a number if interesting situations in which one is interested in a small energy difference which arises
from two states of different multiplicity but same orbital configuration. This is the phenomenon met in diradicals
or in magnetic coupling in transition metal complexes. As a primitive model for such cases one may consider the
hypothetical molecule H-Ne-H in a linear configuration which will be used as a model in this section.
The reference value is obtained by a MR-ACPF calculation with all valence electrons active (again, this example
is somewhat old fashioned – in the present program version you would do a CASSCF calculation followed by MR
methods wit ha single keyword):
14
Most of these results have been obtained with a slightly earlier version for which the MR energies are a little
different from that what the present version gives. The energy differences will not be affected.
5.7 Multireference Configuration Interaction and Pertubation Theory 173
which gives the reference value 108 cm−1 . We now compare that to several other methods which only have the two
“magnetic” orbitals (the 1s’s on the hydrogens) in the active space:
end
NewBlock 3 *
NRoots 1
refs CAS(2,2) end
end
end
All these methods give good results with SORCI leading to a somewhat larger error than the others. The (difference
dedicated CI) DDCI2 method slightly underestimates the coupling which is characteristic of this method. It is nice in
a way that DDCI3 gives the same result as SORCI since SORCI is supposed to approximate the DDCI3 (or better the
IDDCI3) result which it obviously does.
This splitting can also be studied using broken symmetry HF and DFT methods as explained elsewhere in this
manual:
This confirms the usual notions; UHF underestimates the coupling and DFT overestimates it, less so for hybrid
functionals than for GGA’s. The BP86 is worse than PW91 or PBE. The PBE0 hybrid may be the best of the DFT
methods. For some reason most of the DFT methods give the best results if the BS state is simply taken as an
approximation for the true open shell singlet. This is, in our opinion, not backed up by theory but has been observed
by other authors too.
Now let us study the dependence on Tsel as this is supposed to be critical (we use the DDCI3 method):
5.7 Multireference Configuration Interaction and Pertubation Theory 175
Another situation where multireference approaches are necessary is when bond breaking is studied and one wants to
calculate a full potential energy surface. Say we want to compute the potential energy surface of the CH molecule.
First we have to figure out which states to include. Hence, let us first determine a significant number of roots for the
full valence CASSCF reference state (we use a small basis set in order to make the job fast).
* xyz 0 2
C 0 0 0
H 0 0 1.15
*
This yields:
176 5 Running Typical Calculations
-------------------
TRANSITION ENERGIES
-------------------
Thus, if we want to focus on the low-lying states we should include five doublet and one quartet root. Now we run a
second job with these roots and scan the internuclear distance.
%casscf nel 5
norb 5
nroots 5,1
mult 2,4
shiftup 2 shiftdn 2
end
%paras R = 0.8,2.5,25
end
* xyz 0 2
C 0 0 0
H 0 0 {R}
*
The surfaces obtianed in this run are shown in 5.14. You can nicely see the crossing of the 2 Σ and 2 ∆ states fairly
close to the equilibrium distance and also the merging of the 4 Σ state with 2 Π and 2 Σ towards the asymptote that
where C-H dossciates in a neutral C-atom in its 3 P ground state and a neutral hydrogen atom in its 2 S ground state.
You can observe that once AllSingles is set to true (the default), the default settings of the MRCI module yield fairly
smooth potential energy surfaces.
5.7 Multireference Configuration Interaction and Pertubation Theory 177
Figure 5.14: Potential energy surfaces for some low-lying states of CH using the MRCI+Q method
In many cases one will focus on the region around the minimum where the surface is nearly quadratic. In this case one
can still perform a few (2,3,5,. . . ) point polynomial fitting from which the important parameters can be determined.
The numerical accuracy and the behavior with respect to Tsel has to be studied in these cases since the selection
produces some noise in the procedure. We illustrate this with a calculation on the HF molecule:
%paras R = 0.85,1.1,7
end
%casscf nel 8
norb 5
nroots 1 mult 1
shiftup 2.5 shiftdn 2.5 switchstep nr gtol 1e-5
end
* xyz 0 1
F 0 0 0
H 0 0 {R}
*
178 5 Running Typical Calculations
Morse-Fit Results:
Re = 0.94760 Angstroem
we = 3941.1 cm**-1
wexe = 97.2 cm**-1
Which may be compared with the CCSD(T) values calculated with the same basis set:
Morse-Fit Results:
Re = 0.95070 Angstroem =
we = 3958.3 cm**-1
wexe = 90.4 cm**-1
The ozone molecule is a rather classical multireference system due to its diradical character. Let us look at the three
highest occupied and lowest unoccupied MO (the next occupied MO is some 6 eV lower in energy and the next virtual
MO some 10 eV higher in energy):
These MOs are two σ lone pairs which are high in energy and then the symmetric and antisymmetric cominations
of the oxygen π lone pairs. In particular, the LUMO is low lying and will lead to strong correlation effects since
the (HOMO)2 →(LUMO)2 excitation will show up with a large coefficient. Physically speaking this is testimony
of the large diradical character of this molecule which is roughly represented by the structure ↑O-O-O↓. Thus, the
minimal active space to treat this molecule correctly is a CAS(2,2) space which includes the HOMO and the LUMO.
We illustrate the calculation by looking at the RHF, MP2 MRACPF calculations of the two-dimensional potential
energy surface along the O–O bond distance and the O-O-O angle (experimental values are 1.2717 Å and 116.78◦ ).
5.7 Multireference Configuration Interaction and Pertubation Theory 179
%paras R = 1.20,1.40,21
Theta = 100,150,21
end
%casscf nel 2
norb 2
mult 1
nroots 1
end
* int 0 1
O 0 0 0 0 0 0
O 1 0 0 {R} 0 0
O 1 2 0 {R} {Theta} 0
*
This is a slightly lengthy calculation due to the 441 energy evaluations required. RHF does not find any meaningful
minimum within the range of examined geometries. MP2 is much better and comes close to the desired minimum
but underestimates the O–O distance by some 0.03 Å. CCSD(T) gives a very good angle but a O–O distance that is
too long. In fact, the largest doubles amplitude is ≈0.2 in these calculations (the HOMO–LUMO double excitation)
which indicates a near degeneracy calculation that even CCSD(T) has problems to deal with. Already the CAS(2,2)
calculation is in qualitative agreement with experiment and the MRCI+Q calculation then gives almost perfect
agreement.
The difference between the CCSD(T) and MRCI+Q surfaces shows that the CCSD(T) is a bit lower than the MRCI+Q
one suggesting that it treats more correlation. However, it does it in an unbalanced way and the important triples
and quadruples that are brought in in the MRCI calculation through excitation one one- or two electrons from the
HOMO–LUMO double excitation play an important role in balancing the MR calculation. These excitations are
treated to all orders explicitly in the MRCI calculation but only approximately (quadruples as simultaneous pair
excitations and triples perturbatively) in the coupled-cluster approach. Thus, despite the considerable robustness of
CC theory in electronically difficult situations it is not applicable to genuine multireference problems.
This is a nice result despite the too small basis set used and shows how important it can be to go to a multireference
treatment with a physically reasonable active space (even if is only 2 × 2) in order to get qualitatively and quantitatively
correct results.
Finally, we want to study the size consistency errors of the methods. For this we study two non-interacting HF
molecules at the single reference level and compare to the energy of a single HF molecule. This should give a reasonably
fair idea of the typical performance of each method (Energies in Eh):
180 5 Running Typical Calculations
Figure 5.16: 2D potential energy surface for the O3 molecule calculated with different methods.
(most of these numbers were obtained with a slightly older version but will not change too much in the present version)
The results are roughly as expected – CISD+Q has a relatively large error, ACPF and ACPF/2 are perfect for this
type of example; AQCC is not expected to be size consistent and is (only) about a factor of 10 better than CISD+Q
in this respect. CEPA-0 is also size consistent.
5.7 Multireference Configuration Interaction and Pertubation Theory 181
Since version 2.7.0 ORCA avoids the full integral transformation for MR-MP2 which leads to significant savings in
terms of time and memory. Thus, relatively large RI-MR-MP2 calculations can be done with fairly high efficiency.
However, the program still uses an uncontracted first order wavfunction which means that for very large reference
space, the calculations still become untractable.
Consider for example the rotation of the stilbene molecule around the central double bond
Figure 5.17: Rotation of stilbene around the central double bond using a CASSCF(2,2) reference
and correlating the reference with MRMP2.
The input for this calculation is shown below. The calculation has more than 500 basis functions and still runs through
in less than one hour per step (CASSCF-MRMP2). The program takes care of the reduced number of two-electron
integrals relative to the parent MRCI method and hence can be applied to larger molecules as well. Note that we have
taken a ‘JK’ fitting basis in order to fit the Coulomb and the dynamic correlation contributions both with sufficient
accuracy. Thus, this example demonstrates that MRMP2 calculations for not too large reference spaces can be done
efficiently with ORCA (as a minor detail note that the calculations were started at a dihedral angle of 90 degrees in
order to make sure that the correct two orbitals are in the active space, namly the central carbon p-orbitals that
would make up the pi-bond in the coplanar structure).
#
# Stilbene rotation using MRMP2
#
! def2-TZVP def2-TZVP/JK RIJCOSX RI-MRMP2
%casscf nel 2
norb 2
trafostep rimo
switchstep diis
shiftup 0.5
shiftdn 0.5
end
end
* int 0 1
C 0 0 0 0.000000 0.000 0.000
C 1 0 0 1.343827 0.000 0.000
C 2 1 0 1.490606 125.126 0.000
C 1 2 3 1.489535 125.829 {DIHED}
C 4 1 2 1.400473 118.696 180.000
C 4 1 2 1.400488 122.999 0.000
C 6 4 1 1.395945 120.752 180.000
C 5 4 1 1.394580 121.061 180.000
C 8 5 4 1.392286 120.004 0.000
C 3 2 1 1.400587 118.959 180.000
C 3 2 1 1.401106 122.779 0.000
C 11 3 2 1.395422 120.840 180.001
C 12 11 3 1.392546 120.181 0.000
C 13 12 11 1.392464 119.663 0.000
H 1 2 3 1.099419 118.266 0.000
H 2 1 3 1.100264 118.477 179.999
H 5 4 1 1.102119 119.965 0.000
H 6 4 1 1.100393 121.065 0.000
H 7 6 4 1.102835 119.956 180.000
H 8 5 4 1.102774 119.989 180.000
H 9 8 5 1.102847 120.145 180.000
H 10 3 2 1.102271 120.003 0.000
H 11 3 2 1.100185 121.130 0.000
H 12 11 3 1.103001 119.889 180.000
H 13 12 11 1.102704 120.113 180.000
H 14 13 12 1.102746 119.941 180.000
*
5.8 Solvation
In a joint effort with COSMOlogic, the conductor like screening model (COSMO) was implemented throughout ORCA.
Thus, the following calculations can be used to carry out calculations in a polarizable continuum using a realistic
Van-der-Waals cavity
• Energies of molecules in solution with a finite dielectric constant ε using any HF or DFT method.
• Optimization of molecular structures in solution using any HF or DFT method using analytic gradients.
• Calculation of solvent effects on response properties like polarizabilities through coupled-perturbed SCF theory.
For magnetic response properties such as the g-tensor the COSMO response vanishes.
• Calculations of solvent shifts on transition energies using the time-dependent DFT or CIS method. Here one
needs to know the refractive index of the solvent in addition to the dielectric constant.
• First order perturbation estimate of solvent effects on state and transition energies in multireference perturbation
and configuration-interaction calculations.
As a simple example let us look at the solvent effect on the transition energy of the n → π ∗ transition in formaldehyde.
We first do a normal CIS calculation:
5.8 Solvation 183
! RHF TZVP
%cis nroots 1
end
* int 0 1
C 0 0 0 0.000000 0.000 0.000
O 1 0 0 1.200371 0.000 0.000
H 1 2 0 1.107372 121.941 0.000
H 1 2 3 1.107372 121.941 180.000
*
yielding a transition energy of 4.582 eV. Now we repeat the same calculation but with the COSMO model enabled
(which is fairly simple; nothing except the dielectric constant and the refractive index needs to be input; there are
technical parameters which can be defined by the user but this is not necessary in most applications; all modules will
automatically recognize the presence of the COSMO terms automatically).
! RHF TZVP
%cosmo epsilon 80
refrac 1.33
end
%cis nroots 1
end
* int 0 1
C 0 0 0 0.000000 0.000 0.000
O 1 0 0 1.200371 0.000 0.000
H 1 2 0 1.107372 121.941 0.000
H 1 2 3 1.107372 121.941 180.000
*
-------------------------
CALCULATED SOLVENT SHIFTS
-------------------------
Note that there are two different types of shift: the first is the difference between the CIS calculation in the gas phase
and the one using the solvated orbitals. This is the difference 4.984 − 4.582 eV = 0.402 eV. This term is called the
‘slow’ term and represents the interaction of the difference density with the frozen screening charges of the ground
184 5 Running Typical Calculations
state. The second term depends on the instantaneous polarization and is called the ‘fast’ term. It is given by the
extra −0.073 eV printed above thus yielding a total solvent shift of 0.402 − 0.073 eV = 0.329 eV and a final estimate
of the transition energy of 4.875 eV in solution (this is clearly not an accurate value since it is too high as is always
found with CIS; the calculated shift is also somewhat higher compared to accurate MR-CI calculations which give
0.25 eV but it is in the right ballpark; larger basis sets yield also better results here).
Atomic populations and the like are not really a molecular property since they are not observable. They are
nevertheless highly useful for chemical interpretation purposes. ORCA lets you obtain very detailed information about
the calculated molecular orbitals. Mulliken, Löwdin and Mayer population analysis can be performed and many useful
details can be printed. However – it is also easy to get lost in the output from such a calculation since you may not be
interested in all these details. In this case ORCA lets you turn most features off. The default is to perform a rather
large amount of population analysis.
The Mulliken, Löwdin and Mayer analysis tools should be self-explanatory. If you choose ’PrintMOs’ you will not
get a printout of the raw MO expansion coefficients but instead a reduced orbital population where the percentage
contributions per basis function type on each atom are listed. This is highly useful in figuring out the character of
the MOs. You can, however, also request a printout of the MO coefficients themselves via the output block (section
6.22).
In many cases it is not so interesting to look at the MO coefficients but you want to get a full three dimensional
picture of MO’s, electron densities and spin densities. This is relatively easily accomplished with ORCA through the
interface to the gOpenMol and Molekel packages (see section 6.23 for details).
# test populations
! HF SVP XYZFile
%plots Format gOpenMol_bin
MO("CO-4.plt",4,0);
MO("CO-8.plt",8,0);
end
* xyz 0 1
C 0 0 0
O 0 0 1.13
*
5.9 Calculation of Properties 185
produces (after running it through gOpenMol, section 6.23.2) the following output:
Figure 5.18: The π and π ∗ orbitals of the CO molecule obtained from the interface of ORCA to
gOpenMol.
which are the textbook like π and π ∗ orbitals of CO respectively. The format gOpenMol bin is the most easy to
use. The alternative format gOpenMol ascii would require you to use the gOpenMol conversion utitlity. You can
also plot spin densities, electron densities and natural orbitals. See section 6.23.2 for full details. The command
MO("CO-4.plt",4,0); is to be understood as follows: there is an MO to be evaluated on a grid and the output is
stored in the file CI-4.plt. It is MO four of operator 0. Operator zero is the closed shell RHF operator. For UHF
wavefunctions operator 0 is that for spin-up and operator 1 that for spin-down. For ROHF you should also use
operator 0. There are also some alternative output formats including simple ascii files that you can convert yourself to
the desired format.
In order to use the interface to Molekel (see http://www.cscs.ch/molekel/ ) you have to choose the format Cube or
Gaussian Cube which can be read directly by molekel. Since the cube-files are ASCII files you can also transfer them
between platforms.
# test populations
! HF SVP XYZFile
%plots Format Cube
MO("CO-4.cube",4,0);
MO("CO-8.cube",8,0);
end
* xyz 0 1
C 0 0 0
O 0 0 1.13
*
You can now start Molekel and load (via a right mouse click) the XYZ file (or also directly the .cube file). Then go to
the surface menu, select “gaussian-cube” format and load the surface. For orbitals click the “both signs” button and
select a countour value in the “cutoff” field. The click “create surface”. The colour schemes etc. can be adjusted at
will – try it! It’s easy and produces nice pictures. Create files via the “snapshot” feature of Molekel. Other programs
can certainly also deal with Gaussian-Cube files. If you know about another nice freeware program – please let me
know!15
15
The Molekel developers ask for the following citation – please do as they ask:
MOLEKEL 4.2,P.Flukiger,H.P.Luthi,S.Portmann,J.Weber,Swiss Center for Scientific Computing,Manno
(Switzerland),2000-2002.
Stefan Portmann &Hans Peter Luthi.MOLEKEL:An Interactiv Molecular Graphics Tool. CHIMIA (2000), 54,
766-770.
186 5 Running Typical Calculations
Another thing that may in some situations be quite helpful is the visualization of the electronic structure in terms
of localized molecular orbitals. As unitary transformations among the occupied orbitals do not change the total
wavefunction such transformations can be applied to the canonical SCF orbitals with no change of the physical content
of the SCF wavefunction. The localized orbitals correspond more closely to the pictures of orbitals that chemists often
enjoy to think about. Localized orbitals according to the Pipek-Mezey (population-localization) scheme are quite easy
to compute. For example, the following run reproduces the calculations reported by Pipek and Mezey in their original
paper for the N2 O4 molecule. In the output you will find that the localized set of MO‘s consists of 6 core like orbitals
(one for each N and one for each O), two distinct lone pairs on each oxygen, a σ- and a π-bonding orbital for each
N-O bond and one N-N σ-bonding orbital which corresponds in a nice way to the dominant resonance structure that
one would draw for this molecule. You will also find a file with the extension .loc in the directory where you run the
calculation. This is a standard GBW file that you can use for plotting or as input for another calculation (warning!
The localized orbitals have no well defined orbital energy. If you do use them as input for another calculation use
GuessMode=CMatrix in the [SCF] block).
#-----------------------------------------
# Localized MO‘s for the N2O4 molecule
#-----------------------------------------
! HF STO-3G Bohrs
%loc
LocMet PipekMezey # localization method. Choices:
# PipekMezey (=PM)
# FosterBoys (=FB)
T_Core -1000 # cutoff for core orbitals
Tol 1e-8 # conv. Tolerance (default=1e-6)
MaxIter 20 # max. no of iterations (def. 128)
end
* xyz 0 1
N 0.000000 -1.653532 0.000000
N 0.000000 1.653532 0.000000
O -2.050381 -2.530377 0.000000
O 2.050381 -2.530377 0.000000
O -2.050381 2.530377 0.000000
O 2.050381 2.530377 0.000000
*
5.9 Calculation of Properties 187
If you have access to a version of the gennbo program from Weinhold’s group16 you can also request natural population
analysis and natural bond orbital analysis. The interface is very elementary and is invoked through the keywords NPA
and NBO respectively
# -----------------------------------------
# Test the interface to the gennbo program
# ----------------------------------------------
! HF SVP NPA XYZFile
* xyz 0 1
C 0 0 0
O 0 0 1.13
*
If you choose simple NPA then you will only obtain a natural population analysis. Choosing instead NBO the natural
bond orbital analysis will also be carried out. The program will leave a file jobname.47 on disk. This is a valid input
file for the gennbo program which can be edited to use all of the features of the gennbo program in the stand-alone
mode. Please refer to the NBO manual for further details.
Bandshape calculations are nontrivial but can be achieved with ORCA using the procedures described in section 6.18.
Starting from version 2.80, analytical TD-DFT gradients are available which make these calculations quite fast and
applicable without expert knowledge to larger molecules.
In a nutshell, let us look into the H2 CO molecule. First we generate some Hessian (e.g. BP86/SV(P)). Then we run
the job that makes the input for the orca asa program. For example, let us calculate the five lowest excited states:
#
! aug-cc-pVDZ BHandHLYP TightSCF NMGrad
%tddft nroots 5
end
* int 0 1
C 0 0 0 0 0 0
O 1 0 0 1.2 0 0
H 1 2 0 1.1 120 0
H 1 2 3 1.1 120 180
*
NOTE:
• Functionals with somewhat more HF exchange produce beter results and are not as prone to ‘ghost states’ as
GGA functional unfortunately are!
16
Information about the NBO program can be found at http://www.chem.wisc.edu/˜nbo5
188 5 Running Typical Calculations
• Analytic gradients for the (D) correction and hence for double hybrid functionals are NOT available
The ORCA run will produce a file Test-ASA-H2CO.asa.inp that is an input file for the program that generates the
various spectra. It is an ASCII file that is very similar in appearance to an ORCA input file:
#
# ASA input
#
%sim model IMDHO
method Heller
AbsScaleMode Ext
FlScaleMode Rel
# RamanOrder=1 means only fundamentals. For 2 combination
# bands and first overtones are also considered, for 3
# one has second overtones etc.
RamanOrder 1
CAR 0.800
end
5
1 32200.79 100.00 0.00 -0.0000 0.0000 -0.0000
2 58960.05 100.00 0.00 0.0000 -0.4219 0.0000
3 66884.30 100.00 0.00 -0.0000 0.4405 0.0000
4 66602.64 100.00 0.00 -0.5217 -0.0000 0.0000
5 72245.42 100.00 0.00 0.0000 0.0000 0.0000
Before the orca asa program can be invoked this file must be edited. We turn the NAbsPoints variables and spectral
ranges to the desired values and then invoke orca asa:
orca_asa Test-ASA-H2CO.asa.inp
******************
* O R C A A S A *
******************
**************************************************************
* GENERAL CHARACTERISTICS OF ELECTRONIC SPECTRA *
**************************************************************
--------------------------------------------------------------------------------
State E0 EV fosc Stokes shift Effective Stokes shift
(cm**-1) (cm**-1) (cm**-1) (cm**-1)
--------------------------------------------------------------------------------
1: 30457.24 32200.79 0.000000 0.00 0.00
2: 58424.56 58960.05 0.031879 0.00 0.00
190 5 Running Typical Calculations
--------------------------------------------------------------------------------------------------
BROADENING PARAMETETRS (cm**-1)
--------------------------------------------------------------------------------------------------
Intrinsic Effective
State -------------------------- --------------------------------------------------------
Sigma FWHM
Gamma Sigma FWHM --------------------------- ---------------------------
0K 77K 298.15K 0K 77K 298.15K
--------------------------------------------------------------------------------------------------
1: 100.00 0.00 200.00 0.00 0.00 0.00 200.00 200.00 200.00
2: 100.00 0.00 200.00 0.00 0.00 0.00 200.00 200.00 200.00
3: 100.00 0.00 200.00 0.00 0.00 0.00 200.00 200.00 200.00
4: 100.00 0.00 200.00 0.00 0.00 0.00 200.00 200.00 200.00
5: 100.00 0.00 200.00 0.00 0.00 0.00 200.00 200.00 200.00
The fluorescence spectrum of the lowest energy peak (in this case S2 which is not very realistic but for illustrative
purposes it might be enough):
192 5 Running Typical Calculations
The Resonance Raman excitation profiles of the three totally symmetric vibrational modes can be obtained as well:
The dominant enhancement occurs under the main peaks for the C=O stretching vibration which might noth be a
big surprise. Higher energy excitations do enhance the C-H vibrations particularly strongly. The resonance Raman
spectra taken at the vertical excitation energies are also calculated:
5.9 Calculation of Properties 193
In this particular example, the dominant mode is the C=O stretching and the spectra look similar for all excitation
wavelength. However, in ‘real life’ where one has electronically excited state of different nature the rR spectra
also dramatically change and are then powerful fingerprints of the electronic excitation being studied – even if the
vibrational structure of the absorption band is not resolved (which is usually the case for larger molecules).
This is a cursory example of how to use the orca asa program. It is much more powerful than described in this section.
Please refer to section 6.18 for a full description of features. The orca asa program can also be interfaced to other
electronic structure codes that deliver excited state gradients and can be used to fit experimental data. It is thus a
tool for experimentalists and theoreticians at the same time!
5.9.3.1 IR Spectra
IR spectral intensities are calculated automatically in frequency runs. Thus, there is nothing to control by the user.
Consider the following job17 :
17
This and the following jobs in this section are of very poor quality due to the insufficient quality STO-3G basis set
(see section 7.1). However, these jobs execute very rapidly and are therefore adequate for demonstration purposes.
194 5 Running Typical Calculations
-----------
IR SPECTRUM
-----------
The “Mode” indicates the number of the vibration, then the vibrational frequency follows. The value T**2 is the
square of the change of the dipole moment along a given vibrational mode in KM/mole. This number is directly
proportional to the intensity of a given fundamental in an IR spectrum and is what is plotted by orca mapspc.
If you want to obtain a plot of the spectrum then call the small utility program like this:
You get a file Test-NumFreq-H2CO.out.ir.dat which contains a listing of intensity versus wavenumber which can be
used in any graphics program for plotting. For example:
5.9 Calculation of Properties 195
Figure 5.20: The predicted IR spectrum of the H2 CO molecule using the numerical frequency rou-
tine of ORCA and the tool orca mapspc to create the spectrum.
In order to predict the Raman spectrum of a compound one has to know the derivatives of the polarizability with
respect to the normal modes. Thus, if a frequency run is combined with a polarizability calculation the Raman
spectrum will be automatically calculated too.
The output consists of the Raman activity (in A4 /AMU) and the Raman depolarization ratios:
--------------
RAMAN SPECTRUM
--------------
The polarizability derivatives and the Raman intensities will also be added to the .hess file. This allows the effect of
isotope substitutions on the Raman intensities to be calculated.
As with IR spectra you can get a plot of the Raman spectrum using:
Figure 5.21: Calculated Raman spectrum for H2 CO at the STO-3G level using the numerical fre-
quency routine of ORCA and the tool orca mapspc to create the spectrum.
NOTE:
5.9 Calculation of Properties 197
• The Raman module will only work if the polarizabilities are calculated analytically. This means that only
those wavefunction models for which the analytical derivatives w.r.t. to external fields are available can be
used (presently Hartree-Fock and DFT but NOT MP2 or CASSCF).
• Raman calculations take significantly longer than IR calculations due to the extra effort of calculating the
polarizabilities at all displaced geometries. Since the latter step is computationally as expensive as the solution
of the SCF equations you have to accept an increase in computer time by a factor of ≈ 2.
Resonance Raman spectra and excitation profiles can be predicted or fitted using the procedures described in section
6.18.
If you happen to have iron in your molecule and you want to calculate the nuclear resonant vibrational scattering
spectrum you simply have to run orca vib program on your .hess file and you will get an output that can be used
together with orca mapspc program for vizualisation.
The calculations are usually pretty good in conjunction with DFT frequency calculations. For example, take the
ferric-azide complex from the second reference listed below. As for the calculation of resonance Raman spectra
described in section 6.18 the DFT values are usually excellent starting points for least-square refinements.
• Petrenko T.; Sturhahn, W.; Neese, F. (2008) First principles calculation of Nuclear Resonance Vibrational
Spectra, Hyperfine interactions, 175, 165-174
• DeBeer-George, S.; Petrenko, T.; Aliaga-Alcade, N.; Bill, E.; Mienert, B.; Sturhan, W.; Ming, Y.; Wieghardt,
K.; Neese, F. (2007) Characterization of a Genuine Iron(V)Nitrido Species by Nuclear Resonant Vibrational
Spectroscopy Coupled to Density Functional Calculations, J. Am. Chem. Soc., 129, 11053-11060.
Here we illustrate the procedure for getting such plots using a Fe(SH)4 1- model complex as an example. One first
optimized and computes the vibrations of the complex given in one step with the following input (calculations are
usually pretty good in conjunction with DFT frequency calculations and the BP86 functional).
Figure 5.22: Experimental (a, black curve), fitted (a, red) and simulated (b) NRVS spectrum of
the Fe(III)-azide complex obtained at the BP86/TZVP level (T = 20 K). Bar graphs
represent the corresponding intensities of the individual vibrational transitions. The
blue curve represents the fitted spectrum with a background line removed.
From this calculations we get numerous files from which the Hessian file is of importance here. Now we run the
orca vib program on the .hess file and get an output that can be used further with orca mapspc program to prepare
raw data for visualizations:
The latter command creates a file Test-FeIIISH4-NumFreq.nrvs.dat which can be used directly for visualization.
The text-file contains data in xy-format which allows the NRVS intensity (y, in atomic units) to be plotted as a
function of the phonon enrgy (x, in cm−1 ).
From the given run we obtain the NRVS plot below in which we compare with the theoretical IR spectrum on the
same scale. NRVS reports the Doppler broadening of the Moessbauer signal due to resonant scattering of phonons
(vibrations) dominated by the Fe nuclei movements. This are a valuable addition to IR spectra where the corresponding
vibrations might have very small intensity.
5.9 Calculation of Properties 199
Figure 5.23: Theoretical IR spectrum with the shapes of vibrations dominating the IR intensity
and NRVS scattering
In order to animate vibrational modes and to create ‘arrow-pictures’ you have to use the small utility program
orca pltvib. This program uses an ORCA output file and creates a series of files that can be used together with any
visualization program (here: ChemCraft).
For example:
The Test-NumFreq-H2CO.out file can be directly opened with ChemCraft which allows immediate observation of any
vibrations and preparing plots as shown.
Figure 5.24: Nuclear vibrations for H2 CO with the shape of each vibration and its frequency
indicated
We can infer for this example, that say the vibration 1397 cm−1 is a kind of wagging motion of the hydrogen atoms.
It might be that you can prefer to animate vibrations with the (free) program gOpenMol package; there is a small
utility program orca pltvib. This program uses an ORCA output file and creates a series of files that can be used
together with gOpenMol. You can execute orca pltvib in the following way:
Use:
For example, let us see what the strong mode at 1397 cm−1 corresponds to:
5.9 Calculation of Properties 201
orca_pltvib Test-NumFreq-H2CO.out 7
you will get a file Test-NumFreq-H2CO.out.v007.xyz. Then start up the gOpenMol program and read this file as a
Import->coords in Xmol format. After this go to the Trajectory->Main menu and import the file again (again in
Xmol format). Now you are able to animate the vibration. In order to create a printable picture press Dismiss and
then type lulVectorDemo {4 0.1 black} into the gOpenMol command line window. What you get is:
Figure 5.25: The 1395 cm−1 mode of the H2 CO molecule as obtained from the interface of ORCA
to gOpenMol and the orca pltvib tool to create the animation file.
which indicates that the vibration is a kind of wagging motion of the hydrogens. (I’m sure that you can get nicer
arrows with some playing around with gOpenMol). At the gOpenMol homepage you can find a very nice tutorial to
teach you some essential visualization tricks.
Suppose you have calculated a hessian as in the example discussed above and that you want to predict the effect
of substitution with 18 O. It would be very bad pratice to recalculate the hessian to do this since the calculation is
expensive and the hessian itself is independent of the masses. In this case you can use the small utility program
orca vib. First of all you have to look at the .hess file and edit the masses given there by hand. For the example
given above the .hess file looks like:
$orca_hessian_file
......................
$hessian
12
... the cartesian hessian in Eh/bohr**"
$vibrational_frequencies
12
$normal_modes
12 12
... the vibrational normal modes in Cartesian displacements
#
# The atoms: label mass x y z
# !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
202 5 Running Typical Calculations
$actual_temperature
0.000000
$dipole_derivatives
12
orca_vib Test-NumFreq-H2CO.hess
you get then printed to standard out the IR spectrum, the vibrational frequencies, the modes, etc. Let us compare
the output of this calculation with the original frequency calculation:
The calculated isotope shifts greatly aid in the identification of vibrations, the interpretation of experiments and in
the judgement of the reliability of the calculated vibrational normal modes. A different way of analyzing these isotope
shifts is to plot the two predicted spectra and then subtract them from another. This will give you derivative shaped
peaks with a zero crossing at the position of the isotope sensitive modes.
5.9.4 Thermochemistry
The second thing that you get automatically as the result of a frequency calculation is a standard thermochemical
analysis based on ideal gas statistical mechanics. This can be used to study heats of formation, dissociation energies
and similar thermochemical properties.
5.9 Calculation of Properties 203
For example let us calculate a number for the oxygen-oygen dissociation energy in the H2 O2 molecule. First run the
following job:
#
# Calculate a value for the O-O bond strength in H2O2
#
! RKS B3LYP TZVP TightSCF SmallPrint Grid4 NoFinalgrid
! Opt NumFreq
! bohrs
* xyz 0 1
O -1.396288 -0.075107 0.052125
O 1.396289 -0.016261 -0.089970
H -1.775703 1.309756 -1.111179
H 1.775687 0.140443 1.711854
*
#
# Now the OH radical job
#
$new_job
! UKS B3LYP TZVP TightSCF SmallPrint Grid4 NoFinalgrid
! Opt NumFreq PModel
! bohrs
* xyz 0 2
O -1.396288 -0.075107 0.052125
H -1.775703 1.309756 -1.111179
*
The first job gives you the following output following the frequency calculation:
--------------------------
THERMOCHEMISTRY AT 298.15K
--------------------------
------------
204 5 Running Typical Calculations
INNER ENERGY
------------
--------
ENTHALPY
--------
-------
ENTROPY
-------
-------------------
GIBBS FREE ENTHALPY
-------------------
For completeness - the Gibbs free enthalpy minus the electronic energy
G-E(el) ... 0.00492559 Eh 3.09 kcal/mol
------------
INNER ENERGY
------------
--------
ENTHALPY
--------
-------
ENTROPY
-------
-------------------
GIBBS FREE ENTHALPY
-------------------
For completeness - the Gibbs free enthalpy minus the electronic energy
G-E(el) ... -0.00789198 Eh -4.95 kcal/mol
H2O2 -> 2 OH
Final G 36.70
Thus, both the zero-point energy and the entropy terms both contribute significantly to the total free energy change
of the reaction. The entropy term is favoring the reaction due to the emergence of new translational and rotational
degrees of freedom. The zero-point correction is also favoring the reaction since the zero-point vibrational energy of
the O-O bond is lost. The thermal correction and the enthalpy correction are both small.
TIP:
5.9 Calculation of Properties 207
• You can run the thermochemistry calculations at several user defined temperatures by providing the program
with a list of temperatures:
A few basic electric properties can be calculated in ORCA although this has never been a focal point of development.
The properties can be accessed straightforwardly through the %elprop block:
The polarizability is calculated analytically through solution of the coupled-perturbed SCF equations for HF and
DFT runs. For MP2 one can differentiate the analytical dipole moment calculated with relaxed densities. For other
correlation methods only a fully numeric approach is possible.
-------------------------
THE POLARIZABILITY TENSOR
-------------------------
The following jobs demonstrate the numeric and analytic calculations of the polarizability:
# ---------------------------------------------
# Numerical calculation of the polarizability
# ---------------------------------------------
! UKS B3LYP/G SVP VeryTightSCF
%elprop Polar 3
EField 1e-5
end
* int 1 2
C 0 0 0 0 0 0
O 1 0 0 1.1105 0 0
*
$new_job
# ---------------------------------------------
# Analytical calculation of the polarizability
# ---------------------------------------------
! UKS B3LYP/G SVP VeryTightSCF
%elprop Polar 1
Tol 1e-7
end
* int 1 2
C 0 0 0 0 0 0
O 1 0 0 1.1105 0 0
*
Here the polarizability of CO+ is calculated twice – first numerically using a finite field increment of 10−5 au and
then analytically using the CP-SCF method. In general the analytical method is much more efficient, especially for
increasing molecular sizes.
At the MP2 level you need to differentiate the dipole moment numerically in order to obtain the polarizability tensor.
This will in general require tight SCF converge in order to not get too much numerical noise in the second derivative.
Also, you should experiment with the finite field increment in the numerical differentiation process. For example
consider the following simple job:
In a similar way, polarizability calculations are possible with CASSCF. For other correlation methods, where not even
response densities are available, only a fully numeric approach (Polar=3) is possible and requires obnoxiously tight
convergence.
Note that polarizability calculations have higher demands on basis sets. A rather nice basis set for this property is the
Sadlej one (see 6.3.1).
NMR chemical shift at the SCF level (HF and DFT) can be obtained from the EPR/NMR module of ORCA. The
program supports two meaningful choices of origin: the first and recommended one is the use of the IGLO procedure;
the second (less recommended) is to choose the “parent” nucleus as the origin.
The output looks like the following. It contains detailed information about the orientation of the tensor, the eigenvalues,
its isotropic part etc.
---------------
CHEMICAL SHIFTS
---------------
--------------
Nucleus 0C :
--------------
Raw-matrix :
0.0001964 -0.0000000 0.0000000
-0.0000000 0.0001964 -0.0000000
-0.0000000 0.0000000 0.0001964
Orientation:
X -0.0155890 -0.4861104 0.8737584
Y -0.0233997 -0.8734479 -0.4863551
Z 0.9996046 -0.0280275 0.0022413
--------------
Nucleus 1H :
--------------
Raw-matrix :
0.0000379 0.0000000 0.0000000
0.0000000 0.0000273 -0.0000000
0.0000000 0.0000000 0.0000273
Orientation:
X 0.0000001 0.0000060 1.0000000
Y -0.0747638 -0.9972013 0.0000060
Z 0.9972013 -0.0747638 0.0000004
Thus, the absolute, isotropic shielding for the 1 H nuclei is predicted to be 30.8 ppm and for 13 C it is 196.4 ppm. NMR
calculations with IGLO are perhaps best done with the specifically designed IGLO-II or IGLO-III basis sets. The
EPR-II and EPR-III basis sets are also appropriate. However, since IGLO converges rather nicely to the basis set
limit concerns about the basis set only arise if it is really too small, e.g. minimal basis sets or basis sets without
polarization functions.18
In order to compare to experiment it is common practice to choose a standard molecule for the type of nucleus of
interest (for example either CH4 or TMS for proton shifts) and then obtain the chemical shift by subtraction of the
reference value from the computed value. It is of course important that the reference and target calculations have
been done with the same basis set, functional choice of origin and localization procedure. Otherwise the values are
simply not compatible with each other.
Hyperfine and quadrupole couplings can be obtained from the EPR/NMR module of ORCA. Since there may be
several nuclei that you might be interested in the input is relatively sophisticated.
An example how to calculate the hyperfine and field gradient tensors for the CN radical is given below:
18
However, basis sets like SVP may be a little too small. For example, the 13 C shift for CH4 is predicted to be
239.9 ppm which is a large error compared to IGLO-II (196.6 ppm); IGLO-III gives 192 ppm. The much larger
aug-cc-pVTZ leads to a predicted 13 C shielding of 214.3 ppm thus showing that there still is a fair bit of oscillation
around the basis set limit and that therefore it is important to properly standardize.
5.9 Calculation of Properties 211
In this example the hyperfine tensor is calculated for all carbon atoms and all nitrogen atoms which, of course, happen
to be a single atom in this specific case. In general you can also give the numbers of certain atoms instead of ‘all’ in
order to avoid undesired calculations. A more subtle point is that you have to specify the Nuclei statement
after the definition of the atomic coordinates or the program will not figure out what is meant by
‘all’.
The output looks like the following. It contains similar detailed information about the individual contributions to the
hyperfine couplings, its orientation, its eigenvalues, the isotropic part and (if requested) also the quadrupole coupling
tensor.
-----------------------------------------
ELECTRIC AND MAGNETIC HYPERFINE STRUCTURE
-----------------------------------------
-----------------------------------------------------------
Nucleus 0C : I= 0.5 P=134.1900 MHz/au**3 Q= 0.0000 barn
-----------------------------------------------------------
Raw HFC matrix (all values in MHz):
696.2146 -0.0000 -0.0000
-0.0000 542.9631 -0.0000
-0.0000 -0.0000 542.9631
-----------------------------------------------------------
Nucleus 1N : I= 1.0 P= 38.5677 MHz/au**3 Q= 0.0193 barn
-----------------------------------------------------------
Raw HFC matrix (all values in MHz):
13.1112 0.0000 0.0000
0.0000 -45.8793 0.0000
0.0000 0.0000 -45.8793
Orientation:
X -1.0000000 0.0000000 0.0000000
Y -0.0000000 -0.9999998 0.0005676
Z -0.0000000 -0.0005676 -0.9999998
Another point for hyperfine calculations is that you should normally use basis sets that have more flexibility in the core
region. In the present example a double zeta basis set was used. For accurate calculations you need more flexible basis
sets. There are several dedicated basis set for hyperfine calculations: (a) the EPR-II basis of Barone and co-workers.
It is only available for a few light atoms (H, B, C, N, O, F). It is essentially of double-zeta plus polarization quality
with added flexibility in the core region and should give reasonable results (b) The IGLO-II and IGLO-III bases of
Kutzelnigg and co-workers. They are fairly accurate but also only available for some first and second row elements (c)
the CP basis for first row transition metals which is accurate as well. (d) General purpose HF-limit basis sets are the
uncontracted Partridge basis sets. They will probably be too expensive for routine use but are useful for calibration
purposes.
For other elements ORCA does not yet have dedicated default basis sets for this situation it is very likely that you
have to tailor the basis set to your needs. If you use the statement Print[p basis] 2 in the output block the program
will print the actual basis set in input format (for the basis block). You can then add or remove primitives, uncontract
core bases etc. For example here is a printout of the carbon basis DZP in input format:
1 3.5744765000 1.0000000000
s 1
1 0.5748324500 1.0000000000
s 1
1 0.1730364000 1.0000000000
p 3
1 9.4432819000 0.0570590790
2 2.0017986000 0.3134587330
3 0.5462971800 0.7599881644
p 1
1 0.1520268400 1.0000000000
d 1
1 0.8000000000 1.0000000000
end;
The ‘s 5’, for example, stands for the angular momentum and the number of primitives in the first basis function.
Then there follow five lines that have the number of the primitive, the exponent and the contraction coefficient
(unnormalized) in it. Remember also that when you add very steep functions you must increase the size of the
integration grid if you do DFT calculations! If you do not do that your results will be inaccurate. You can increase
the radial grid size by using IntAcc in the Method block or for individual atoms (section 6.2.2.2 explains how to do
this in detail). In the present example the changes caused by larger basis sets in the core region and more accurate
integration are relatively modest – on the order of 3%, which is, however, still significant if you are a little puristic.
The program can also calculate the spin-orbit coupling contribution to the hyperfine coupling tensor as described in
section 6.21.3
If also EPR g-tensor or D-tensor calculations (see next section) are carried out in the same job, ORCA automatically
prints the orientation between the hyperfine/quadrupole couplings and the molecular g- or D-tensor. For more
information on this see section 6.24.10.
The EPR g-tensor is a property that can be well calculated at the SCF level with ORCA through solution of the
coupled-perturbed SCF equations. Consider the following multi-job input that computes the g-tensor at three different
levels of theory:
$new_job
! UKS LSD Def-2 RI SmallPrint PModel SOMF(1X)
%method frozencore fc_ewin end
%eprnmr gtensor 1 ewin -100,100 ori -3
end
* int 1 2
O 0 0 0 0 0 0
H 1 0 0 1.1056 0 0
H 1 2 0 1.1056 109.62 0
*
$new_job
! UKS BP Def-2 RI SmallPrint PModel SOMF(1X)
%method frozencore fc_ewin end
%eprnmr gtensor 1 ori -3
end
* int 1 2
O 0 0 0 0 0 0
H 1 0 0 1.1056 0 0
H 1 2 0 1.1056 109.62 0
*
The statement ori -3 means that the origin for this gauge dependent property is to be taken at the center of electronic
charge. The SOMF(1X) defines the details of the spin-orbit-coupling operator and are explained in section 6.21.2 (in
the present case an accurate variant is specified) Other choices and additional variables exist and are explained in
detail in section 6.21.2.
The output looks like the following. It contains information on the contributions to the g-tensor (relativistic mass
correction, diamagnetic spin-orbit term (= gauge-correction), paramagnetic spin-orbit term (= OZ/SOC)), the
isotropic g-value and the orientation of the total tensor.
-------------------
ELECTRONIC G-MATRIX
-------------------
If the total spin of the system is S >1/2 then the zero-field-splitting tensor can also be calculated and printed. For
example consider the following job on a hypothetical Mn(III)-complex.
#
# Test the ZFS program
#
! UKS BP86 RI Def-2 NoFinalGrid SOMF(1X)
* int 1 5
Mn 0 0 0 0 0 0
O 1 0 0 2.05 0 0
O 1 2 0 2.05 90 0
O 1 2 3 2.05 90 180
O 1 2 3 2.05 180 0
F 1 2 3 1.90 90 90
F 1 2 3 1.90 90 270
H 2 1 6 1.00 127 0
H 2 1 6 1.00 127 180
H 3 1 6 1.00 127 0
H 3 1 6 1.00 127 180
H 4 1 6 1.00 127 0
H 4 1 6 1.00 127 180
H 5 1 6 1.00 127 0
H 5 1 6 1.00 127 180
*
The output documents the individual contributions to the D-tensor which also contains (unlike the g-tensor) contribu-
tions from spin-flip terms.
216 5 Running Typical Calculations
• The present implementation in ORCA is valid for HF, DFT and hybrid DFT. An approximation to DSS can
be obtained from CASSCF.
• There are four different variants of the SOC-contribution, which shows that this is a difficult property. We will
briefly discuss the various choices.
• The QRO method is fully documented in (Neese, F. (2006) Importance of Direct Spin-Spin Coupling and
Spin-Flip Excitations for the Zero-Field Splittings of Transition Metal Complexes: A Case Study, J. Am. Chem.
Soc., 128, 10213-10222) and this paper should be cited. It is based on the theory developed earlier (Neese, F.;
Solomon, E.I. (1998) Calculation of Zero-Field Splittings, g-values and the Relativistic Nephelauxetic Effect in
Transition Metal Complexes. Application to High Spin Ferric Complexes. Inorg. Chem., 37, 6568-6582). The
QRO method is reasonable but somewhat simplistic and is superseded by the CP method described below.
• The Pederson-Khanna model was brought forward in 1999 from qualitative reasoning and is documented in:
Pederson, M. R.; Khanna, S. N., Phys. Rev. B. 1999, 60, (13), 9566. It also contains incorrect prefactors for
the spin-flip terms. We have nevertheless implemented the method for comparison. In the original form it is
only valid for local functionals. In ORCA it is extended to hybrid functionals and HF.
• The coupled-perturbed method is a generalization of the DFT method for ZFSs it uses revised prefactors for
the spin-flip terms and solves a set of coupled-perturbed equations for the SOC perturbation. Therefore it is
valid for hybrid functionals. It is described in detail in Neese, F. (2007) Calculation of the Zero-Field Splitting
Tensor Using Hybrid Density Functional and Hartree-Fock Theory. J. Chem. Phys., 127, 164112.
• The DSS part is an expectation value that involves the spin-density of the system. In detailed calibration work
(Sinnecker, S.; Neese, F. (2006) J. Phys. Chem. A, 110, 12267-12275) it was found that the spin-unrestricted
DFT methods behave somewhat erratically and that much more accurate values were obtained from open-shell
spin-restricted DFT. Therefore the ‘UNO’ option allows the calculation of the SS term with a restricted
spin-density obtained from the singly occupied unrestricted natural orbitals.
• The DSS part contains an erratic selft-interaction term for UKS/UHF wavefunction and canonical orbitals.
Thus, UNO is recommended for these types of calculations. The issue is reported in the paper: Riplinger, C.;
Neese, F.; et al. (2009) J. Am. Chem. Soc., 131, 10092-10106. If the option DIRECT is used nevertheless,
ORCA will print a warning in the respective part of the output.
57
Fe Mössbauer spectroscopy probes the transitions of the nucleus between the I = 12 ground state and the I = 32
excited state at 14.4 keV above the ground state. The important features of the Mössbauer spectrum are the isomer
shift (δ) and the quadrupole splitting (∆EQ ). An idealized spectrum is shown in Figure 5.26.
The isomer shift measures the shift in the energy of the γ-ray absorption relative to a standard, usually Fe foil. The
isomer shift is sensitive to the electron density at the nucleus, and indirectly probes changes in the bonding of the
valence orbitals due to variations in covalency and 3d shielding. Thus, it can be used to probe oxidation and spin
states, and the coordination environment of the iron.
The quadrupole splitting arises from the interaction of the nuclear quadrupole moment of the excited state with the
electric field gradient at the nucleus. The former is related to the non-spherical charge distribution in the excited
state. As such it is extremely sensitive to the coordination environment and the geometry of the complex.
5.9 Calculation of Properties 217
Figure 5.26: A typical Mössbauer spectrum showing both the isomer shift, δ, and the quadrupole
splitting, ∆EQ .
Both the isomer shift and quadrupole splitting can be successfully predicted using DFT methods. The isomer shift is
directly related to the s electron density at the nucleus and can be calculated using the formula
δ = α(ρ0 − C) + β (5.10)
where α is a constant that depends on the change in the distribution of the nuclear charge upon absorption, and ρ0 is
the electron density at the nucleus [92]. The constants α and β are usually determined via linear regression analysis
of the experimental isomer shifts versus the theoretically calculated electron density for a series of iron compounds
with various oxidation and spin states. Since the electron density depends on the functional and basis set employed,
fitting must be carried out for each combination used. A recent compilation of calibration constants (α, β and C) for
various methods is given in Roemelt, M.; Ye, S.; Neese, F. Inorg. Chem. 2009, 48, 784–785. Usually an accuracy of
better than 0.10 mm s−1 can be achieved for DFT with reasonably sized basis sets.
The quadrupole splitting is proportional to the largest component of the electric field gradient (EFG) tensor at the
iron nucleus and can be calculated using the formula:
12
η2
1
∆EQ = eQVzz 1+ (5.11)
2 3
where e is the electrical charge of an electron and Q is the nuclear quadrupole moment of Fe (approximately 0.16
barns). Vxx , Vyy and Vzz are the electric field gradient tensors and η, defined as
Vxx − Vyy
η = (5.12)
Vzz
is the asymmetry parameter in a coordinate system chosen such that |Vzz | ≥ |Vyy | ≥ |Vxx |.
An example of how to calculate the electron density and quadrupole splitting of an iron center is as follows:
218 5 Running Typical Calculations
%eprnmr
nuclei = all Fe {fgrad, rho}
end
If the core properties basis set CP(PPP) is employed, one has to increase the radial integration accuracy for the iron
atom, for example:
%method
SpecialGridAtoms 26
SpecialGridIntAcc 7
end
The output file should contain the following lines, where you obtain the calculated quadrupole splitting directly and
the RHO(0) value (the electron density at the iron nucleus). To obtain the isomer shift one has to insert the RHO(0)
value into the appropriate linear equation (Eq. 5.10).
A popular way to estimate the phenomenological parameter JAB that enters the Heisenberg–Dirac–van Vleck
Hamiltonian which parameterizes the interaction between two spin systems is the ‘broken-symmetry’ formalism. The
phenomenological Hamiltonian is:
~A S
HHDvV = −2JAB S ~B (5.13)
It is easy to show, that such a Hamiltonian leads to a ‘ladder’ of spin states from S = SA + SB down to S = |SA − SB |.
If the parameter JAB is positive the systems ‘A’ and ‘B’ are said to be ferromagnetically coupled because the highest
spin-state is lowest in energy while in the case that JAB is negative the coupling is antiferromagnetic and the lowest
spin state is lowest in energy.
In the broken symmetry formalism one tries to obtain a wavefunction that breaks spatial (and spin) symmetry. It may
be thought of as a ‘poor man’s MC-SCF’ that simulates a multideterminantal character within a single determinant
framework. Much could be said about the theoretical advantages, disadvantages, problems and assumptions that
underly this approach. Here, we only want to show how this formalism is applied within ORCA.
For NA unpaired electrons localized on ‘site A’ and NB unpaired electrons localized on a ‘site B’ one can calculate the
parameter JAB from two separate spin-unrestricted SCF calculations: (a) the calculation for the high-spin state with
S = (NA +N
2
B)
and (b) the ‘broken symmetry’ calculation with MS = (NA −N 2
B)
that features NA spin-up electrons
5.9 Calculation of Properties 219
that are quasi-localized on ‘site A’ and NB spin-down electrons that are quasi-localized on ‘site B’. Several formalisms
exist to extract JAB :
(EHS − EBS )
JAB = − (5.14)
(SA + SB )2
(EHS − EBS )
JAB = − (5.15)
(SA + SB ) (SA + SB + 1)
(EHS − EBS )
JAB = − (5.16)
hS 2 iHS − hS 2 iBS
We prefer the last definition (Eq. 5.16) because it is approximately valid over the whole coupling strength regime
while the first equation implies the weak coupling limit and the second the strong coupling limit.
The program will then go through a number of steps. Essentially it computes an energy and wavefunction for the
high-spin state, localizes the orbitals and reconverges to the broken symmetry state.
CAUTION: Make sure that in your input coordinates ‘site A’ is the site that contains the larger
number of unpaired electrons!
Most often the formalism is applied to spin coupling in transition metal complexes or metal-radical coupling or to the
calculation of the potential energy surfaces in the case of homolytic bond cleavage. In general, hybrid DFT methods
appear to give reasonable semiquantitative results for the experimentally observed splittings.
As an example consider the following simple calculation of the singlet–triplet splitting in a stretched Li2 molecule:
#
# Example of a broken symmetry calculation
#
! UKS B3LYP/G SVP TightSCF Grid4 NoFinalGrid
%scf BrokenSym 1,1
end
* xyz 0 3
Li 0 0 0
Li 0 0 4
*
There is a second mechanism for generating broken-symmetry solutions in ORCA. This mechanism uses the individual
spin-densities and is invoked with the keywords FlipSpin and FinalMs. The strategy is to exchange the alpha and
beta spin blocks of the density on certain user-defined centers after converging the high-spin wavefunction. With this
method arbitrary spin topologies should be accessible. The use is simple:
220 5 Running Typical Calculations
#
# Example of a broken symmetry calculation using the "FlipSpin" feature
#
! UKS B3LYP/G SVP TightSCF Grid4 NoFinalGrid
%scf
FlipSpin 1
# Flip spin is a vector and you can give a list of atoms
# on which you want to have the spin flipped. For example
# FlipSpin 17,38,56
# REMEMBER: counting starts at atom 0!
FinalMs 0
# The desired Ms value of the broken symmetry determinant.
# This value MUST be given since the program cannot determine it by itself.
end
* xyz 0 3
Li 0 0 0
Li 0 0 4
*
Since ORCA version 2.8, a molecular dynamics program is available. It allows to run direct molecular dynamics also
known as “on-the-fly” molecular dynamics. Any method in ORCA can be used with either analytical or numerical
gradients, which are automatically requested. The obtained gradients are inserted in the classical Newton’s equations
of motions and solved numerically using one of three variants of the Verlet algorithm (Velocity Verlet [93], Verlet [94]
and Leapfrog [95]). The keyword to select the algorithm is MD Algorithm and the default is the Velocity Verlet. In
addition, an implicit solvent model can be included using COSMO.
In order to request a molecular dynamics simulation with default values just an MD keyword is required on the simple
input line:
! HF SVP MD
* xyz 0 1
H 0.00 0.00 0.00
H 0.00 0.00 1.00
*
THERMO 0 # No thermostat
1 # Scaling velocities
ORCA is easy to interface as a QM engine in pretty much any QM/MM environment, as it will accept a set of point
charges from an external file (see section 6.1.3) and it will return, in a transparent format, all the required information
for computing energies and gradients to the driving program. In our research group we have experience with three
different QM/MM environments: Gromacs, pDynamo and ChemShell. In the following each of the interfaces are
described. Is beyond the scope of the manual to be exhaustive, and only minimal working examples are going to be
presented. These will cover mainly the technical aspects with respect to the QM part of the QM/MM calculation. For
the initial preparation of the system the user is referred to the documentation of the driving program.
In cooperation with the developers of Gromacs software package we developed an interface to ORCA. The interface is
available starting with Gromacs version 4.0.4.
As mentioned above, the initial setup has to be done with the Gromacs. In the QM/MM calculation Gromacs is
will call ORCA to get the energy and the gradients of the QM atoms. The interface can be used to perform all job
types allowed by the Gromacs software package, e.g. optimizations, molecular dynamics, free energy. In addition, for
geometry optimizations we have implemented a microiterative scheme that can be requested by setting the keyword
bOpt = yes in the Gromacs .mdp file. This will cause ORCA to perform a QM geometry optimization every time
it is called by Gromacs. During this optimization ORCA will also compute the Lennard-Jones interaction between
the QM and MM atoms, and freeze the boundary atoms. This microiterative scheme can also be used to perform a
transition state optimization. If you are looking for a transition state and have a good initial guess for the structure,
you can carry out an optimization of the MM system and at the same time perform a transition state optimization of
the QM system with ORCA via the microiterative scheme. Since it is expensive to calculate the Hessian for each
microiterative microiterative step, the user can tell ORCA to use the (updated) Hessian matrix of the previous step
via read temp Hess in the ORCA input.
In order to allow full flexibility to the user, the information for the QM run are provided in a separate plain text file,
called GromacsBasename.ORCAINFO. When Gromacs writes the input for the ORCA calculation, it will merge this file
with the information on the coordinates, point charges, Lennard-Jones coefficients and type of calculation (EnGrad,
Opt, TSOpt).
222 5 Running Typical Calculations
Below is a typical example of an input file created by Gromacs, where for each Gromacs optimization step, a full
optimization of the QM-part will be performed by ORCA, instead of just doing the energy and gradient calculation.
# Optimization step in the Lennard-Jones and point charges field of the MM atoms
! QMMMOpt
# file containing the Lennard Jones coefficients for the Lennard-Jones interaction
%LJCoefficients "temp.LJ"
# file containing the point charges for the electrostatic interaction
%pointcharges "temp.pc"
%geom
# calculate the exact Hessian before the first optimization step
Calc_Hess true
# in case of a TS optimization the updated Hessian of the previous
# TS optimization run is read instead of calculating a new one
read_temp_Hess true
end
NOTES:
• If you are using bOpt or bTS you have to take care of additional terms over the boundary. Either you can zero
out the dihedral terms of the Q2-Q1-M1-M2 configurations, or you can fix the respective Q2 atoms.
• If you want to use the ORCA constraints, you have to also put them in the Gromacs part of the calculation.
• If there are no bonds between QM and MM system, the bOpt optimization of the QM system might have
convergence problems. This is the case if the step size is too large and thus QM atoms come too close to MM
atoms. The convergence problems can be circumvented by adding extra coordinates and Hessian diagonal
values for Cartesian coordinates of selected QM atoms to the set of internal coordinates. This should be done
for only few atoms that are in the boundary region.
%geom
# add the Cartesian position of atoms 2 and 4 to the
# set of internal coordinates with a diagonal Hessian value of 0.1
Hess_Internal
{C 2 D 0.1}
{C 4 D 0.1}
end
end
The interface with the pDynamo library is briefly documented here. It uses the same plain text files to exchange
information between the pDynamo library and ORCA. In order to have simiar functionality as presented above, we
have extended the interface to generate more complex ORCA input files by accepting verbatim blocks of text. We
have also implemented in pDynamo the capability of writing files containing Lennard-Jones parameters.
5.11 QM/MM Calculations 223
A simple example which calculates the QM/MM energy for a small designed peptide in which the side chain of one
amino acid is treated QM is ilustrated below. For this example, a complete geometry optimization is going to be
performed during the ORCA call.
import os
import pCore
import pBabel
import pMolecule
import pMoleculeScripts
After the execution of the above Python program, a series of files are going to be created chignolin.inp, chignolin.pc,
chignolin.lj and ORCA is going to be called. The generated ORCA input file is listed below.
% pointcharges "chignolin.pc"
% ljcoefficients "chignolin.lj"
* xyz -1 1
H -1.0637532468 1.1350324675 2.4244220779
C -0.5230000000 0.6870000000 3.2490000000
C 0.4180000000 1.7240000000 3.8660000000
O -0.0690000000 2.7620000000 4.2830000000
O 1.6090000000 1.4630000000 3.9110000000
H -1.2240000000 0.3460000000 3.9970000000
H 0.0550000000 -0.1510000000 2.8890000000
*
There are few points that have to be raised here. Because the keyword qmmm/pdynamo was specified in the header
variable, the pDynamo library will automatically add the constraint block in the ORCA input, which will freeze the
link atoms and the QM atoms to which they are bound. It will also generate the chignolin.lj file containing all the
Lennard-Jones parameters. The important parts of this file, which is somewhat different than the one generated by
Gromacs, are listed next.
36 31 0.500000
40 32 0.500000
40 39 0.500000
34 31 0.000000
35 30 0.500000
34 11 0.500000
34 38 0.500000
41 31 0.000000
37 31 0.500000
34 33 0.500000
34 39 0.000000
40 30 0.500000
41 39 0.500000
34 30 0.000000
35 31 0.000000
34 42 0.500000
35 32 0.500000
The second number on the first line refers to the type of combination rule used to calculate the Lennard-Jones
interaction. It is 0 if a geometric average is used (OPLS force field), or 1 for the Lorentz-Bertelot rules (AMBER force
field). The id on the last column is -1 for MM atoms and is equal to the atom number for the QM atoms. In this case
the hydrogen link atom is atom 0. The last block of the file is composed of atom pairs and a special factor by which
their Lennard-Jones interaction is scaled. In general this factor is equal to 1, but for atoms one or two bonds apart is
zero, while for atoms three bonds apart depends on the type of force field, and in this case is 0.5.
After successful completion of the ORCA optimization run, the information will be relayed back the pDynamo library,
which will report the total QM/MM energy of the system. At this point the type QM/MM of calculation is limited
only by the capabilities of the pDynamo library, which are quite extensive.
226
6 Detailed Documentation
We will now enter the detailed discussion of the features of ORCA. Note that some examples are still written in the
‘old syntax’ but that there is no need for the user to adopt that old syntax. The new one works as well.
The atoms in the molecule can be assigned to certain fragments. Presently this doesn’t do much but to help to
organize the output in the population analysis section (and can therefore be very useful). To assign a given atom to a
given fragment put a (n) directly after the atomic symbol. Fragment enumeration starts with fragment 1!
%coords
CTyp xyz # the type of coordinates xyz or internal
Charge -2 # the total charge of the molecule
Mult 2 # the multiplicity = 2S+1
coords
Cu(1) 0 0 0
Cl(2) 2.25 0 0
Cl(2) -2.25 0 0
Cl(2) 0 2.25 0
Cl(2) 0 -2.25 0
end
end
In this example the fragment feature is used to divide the molecule into a ‘metal’ and a ‘ligand’ fragment and
consequently the program will print the metal and ligand characters contained in each MO in the population analysis
section.
ORCA lets you define the coordinates of all atoms as functions of user defined geometry parameters. By giving not
only a value but a range of values (or a list of values) to this parameters potential energy surfaces can be scanned.
In this case the variable RunTyp is automatically changed to Scan. The format for the parameter specification is
straightforward:
6.1 More on Coordinate Input 227
%coords
CTyp internal
Charge 0
Mult 1
pardef
rCH = 1.09; # a C-H distance
ACOH = 120.0; # a C-O-H angle
rCO = 1.35, 1.10, 26; # a C-O distance that will be scanned
end
coords
C 0 0 0 0 0 0
O 1 0 0 {rCO} 0 0
H 1 2 0 {rCH} {ACOH} 0
H 1 2 3 {rCH} {ACOH} 180
end
end
In the example above the geometry of formaldehyde is defined in internal coordinates (the geometry functions
work exactly the same way with cartesian coordinates). Each geometrical parameter can be assigned as a func-
tion of the geometry parameters by enclosing the function braces, “{}”. For example a function may look like
{0.5*cos(Theta)*rML+R}. Note that all trigonometric functions expect their arguments to be in degrees and not
radians. The geometry parameters are expected to be defined such that the lengths come out in Ångströms and the
angles in degrees. After evaluating the functions the coordinates will be converted to atomic units. In the example
above the variable rCO was defined as a ‘Scan parameter’. Its value will be changed in 26 steps from 1.3 down to
1.1 and at each point a single point calculation will be done. At the end of the run the program will summarize the
total energy at each point. This information can then be copied into the spreadsheet of a graphics program and the
potential energy surface can be plotted. Up to three parameters can be scan parameters. In this way grids or cubes of
energy (or property) values as a function of geometry can be constructed.
If you want to define a parameter at a series of values rather than evenly spaced intervals, the following syntax is to
be used:
%coords
CTyp internal
Charge 0
Mult 1
pardef
rCH = 1.09; # a C-H distance
ACOH= 120.0; # a C-O-H angle
rCO [1.3 1.25 1.22 1.20 1.18 1.15 1.10]; # a C-O distance that will be scanned
end
coords
C 0 0 0 0 0 0
O 1 0 0 {rCO} 0 0
H 1 2 0 {rCH} {ACOH} 0
228 6 Detailed Documentation
In this example the C-O distance is changed in seven non-equidistant steps. This can be used in order to provide
more points close to a minimum or maximum and fewer points at less interesting parts of the surface.
A special feature has also been implemented into ORCA - the parameters themselves can be made functions of the
other parameters as in the following (nonsense) example:
%coords
CTyp internal
Charge 0
Mult 1
pardef
rCOHalf= 0.6;
rCO = { 2.0*rCOHalf };
end
coords
C 0 0 0 0 0 0
O 1 0 0 {rCO} 0 0
O 1 0 0 {rCO} 180 0
end
end
In this example the parameter rCO is computed from the parameter rCOHalf. In general the geometry is computed
(assuming a Scan calculation) by (a) incrementing the value of the parameter to be scanned, (b) evaluating the
functions that assign values to parameters and (c) evaluating functions that assign values to geometrical variables.
Although it is not mandatory it is good practice to first define the static or scan-parameters and then define the
parameters that are functions of these parameters.
Finally ORCA has some special features that may help to reduce the computational effort for surface scans:
%method
SwitchToSOSCF true
# switches the converger to SOSCF
# after the first point. SOSCF may
# converge better than DIIS if the
# starting orbitals are good.
# default = false
ReducePrint true # reduce printout after the first
# point default=true
# The initial guess can be changed after the first
# point. The default is MORead. The MO’s of the pre-
# vious point will in many cases be a very good guess
6.1 More on Coordinate Input 229
NOTE:
• You can scan along normal modes of a hessian using the NMScan feature as described in section 6.14.8.9.
• The surface scan options are also supported in conjunction with TD-DFT/CIS or MR-CI calculations (see
section 6.14.8.7).
In some situations it is desirable to add point charges to the system. In ORCA there are two mechanisms to add
point-charges. If you only want to add a few point charges you can “mask” them as atoms as in the following
(nonsense) input:
# A water dimer
! BP86 def2-SVP
* xyz 0 1
O 1.4190 0.0000 0.0597
H 1.6119 0.0000 -0.8763
H 0.4450 0.0000 0.0898
Q -0.834 -1.3130 0.0000 -0.0310
Q 0.417 -1.8700 0.7570 0.1651
Q 0.417 -1.8700 -0.7570 0.1651
*
Here the “Q”’s define the atoms as point charges. The next four numbers are the magnitude of the point charge and
its position. The program will then treat the point charges as atoms with no basis functions and nuclear charges equal
to the Q’values.
If you have thousands of point charges to treat, as in a QM/MM calculation, it is more convenient, and actually
necessary, to read the point charges from an external file as in the following example:
# A water dimer
! BP86 def2-SVP
% pointcharges "pointcharges.pc"
230 6 Detailed Documentation
* xyz 0 1
O 1.4190 0.0000 0.0597
H 1.6119 0.0000 -0.8763
H 0.4450 0.0000 0.0898
*
The program will now read the file “pointcharges.pc” that contains the point-charge information and then call the
module orca pc which adds the point charge contribution to the one-electron matrix and the nuclear repulsion. The
file “pointcharges.pc” is a simple ASCII file in the following format:
3
-0.834 -1.3130 0.0000 -0.0310
0.417 -1.8700 0.7570 0.1651
0.417 -1.8700 -0.7570 0.1651
The first line gives the number of point charges. Each conseqcutive line gives the magnitude of the point charge (in
atomic units) and its position (in Angström units!).
ORCA can also correctly do QM/MM calculations with external point charges for semi-empirical calculations. In this
case, the point-charge-atom interactions are estimated as in the semi-empirical methods themselves, namely using the
ZDO approximation and employing the appropriate GAMMA-integrals that are also used in the ZDO Hamiltonian
itself.
The computational model is specified in the block %method. The following choices exist:
%method
Method HFGTO # Hartree-Fock with GTOs (synonym HF)
DFGTO # Density Functional with GTOs (syn. DFT)
MP2 # Second order Moeller-Plesset
CNDO # complete neglect of differential overlap
INDO # intermediate neglect of d. o.
NDDO # neglect of diatomic d. o.
end
In the case of Hartree-Fock calculations [96] nothing else is required in this block. Density functional calculations [97,98]
need slightly more attention.
%method
RunTyp Energy # single point calc. (default)
Gradient # single point energy and gradient
Opt # Geometry optimization
MD # Molecular dynamics
Scan # scan of geometric parameters
end
You can tell the main program the explicit names and positions of the other modules. In this way you could in
principle also interface your own programs to ORCA as long as they respect the input/output conventions used in
ORCA (which are, however, reasonably complicated).
%method
#*** the name of the SCF program
ProgSCF "MySCFProg.exe"
#*** the name of the GTO integral program
ProgGTOInt "MyGTOIntProg.exe"
#**** the name of the MP2 module
ProgMP2 "MyProgMP2.exe"
#*** the name of the plot program
ProgPlot "MyPlotProgram.exe"
#*** the name of the SCF gradient program
ProgSCFGrad "MySCFGradientProg.exe"
#*** the name of the geometry relaxation program
ProgGStep "MyProgGStep.exe"
#*** the name of the molecular dynamics program
ProgMD "MyProgMD.exe"
#*** the name of the moment integral program
ProgMom "MyProgMom.exe"
# *** the name of the EPR/NMR module
ProgEPRNMR "MyProgEPRNMR.exe"
#*** the name of the CP-SCF program
ProgCPSCF "MyProgCPSCF.exe"
# *** the name of the CI-singles and TD-DFT module
ProgCIS "MyProgCIS.exe"
# *** the name of the Relativistics module
ProgREL "MyProgREL.exe"
end
For example, if the executables are all located in the same run directory (and the PATH variable contains this
directory!) use:
%method
ProgSCF "orca_scf.exe"
232 6 Detailed Documentation
ProgGTOInt "orca_gtoint.exe"
ProgMP2 "orca_mp2.exe"
ProgPlot "orca_plot.exe"
ProgSCFGrad "orca_scfgrad.exe"
ProgGStep "orca_gstep.exe"
ProgMD "orca_md.exe"
ProgMom "orca_mom.exe"
ProgCPSCF "orca_cpscf.exe"
ProgEPRNMR "orca_eprnmr.exe"
ProgCIS "orca_cis.exe"
ProgRel "orca_rel.exe"
ProgMDCI "orca_mdci.exe"
end
Basic Choice of Density Functional. If you are doing a DFT calculation [97, 98], the following choices for local
and gradient corrected density functionals are available:
[METHOD]
# Choices for ’Functional’. References to the individual
# exchange and correlation parts of the functionals are
# given below
Functional
#***************************************
# Local functionals
#***************************************
HFS # Hartree-Fock Slater
XAlpha # The famous old Slater Xa theory
LSD # Local spin density (VWN-5A form)
VWN5 # Local spin density (VWN-5)
VWN3 # Local spin density (VWN-3)
PWLDA # Local spin density (PW-LDA)
#***************************************
# ’Pure’ GGA functionals
#***************************************
BNULL # Becke ’88 exchange, no corr.
BVWN # Becke ’88 exchane, VWN-5 corr.
BP # Becke X-Perdew 86 correlation
PW91 # Perdew-Wang GGA-II ’91 func.
mPWPW # Modified PW with PW correlation
mPWLYP # same with LYP correlation
6.2 Choice of Computational Model 233
Note that Functional is a compound key. It does nothing else but to choose specific values for the variables Exchange,
Correlation and ACM described below. You can explicitly give these variables instead or in addition to Functional.
However, make sure that you specify these variables after you have assigned a value to Functional or the values of
Exchange, Correlation and ACM will be reset to the values chosen by Functional.
Empirical Parameters in Density Functionals. Some of the functionals incorporate empirical parameters that
can be changed to improve agreement with experiment. In ORCA there is some freedom to change functional
parameters. Currently there are three parameters that can be changed (other than the parameters used in the hybrid
functionals). They are all part of exchange functionals. The first of these parameters is α of Slaters Xα method.
Theoretically it has a value of 2/3 and this is used in the HFS and LSD functionals. However, exchange is about 10%
underestimated by this approximation (a very large number!) and a value around 0.70-0.75 seems to be better for
molecules. The second parameter is the parameter β for Becke’s gradient corrected exchange functional. Becke has
determined the value 0.0042 by fitting the exchange energies for rare gas atoms. There is some evidence that with
smaller basis sets for molecules a slightly smaller value such as 0.0039 gives improved results. The final parameter
is the value κ occuring in the PBE exchange functional. It has been given the value 0.804 by Perdew et al. in order
to satisfy the Lieb-Oxford bound. Subsequently other workers have argued that a larger value for this parameter
(around 1.2) gives better energetics and this is explored in the revPBE functional. Note that it also has been shown
that while revPBE gives slightly better energetics it also gives slightly poorer geometries.
%method
XAlpha 0.75 # Slater’s alpha parameter (default 2/3)
XBeta 0.0039 # Becke’s beta parameter
# (default 0.0042)
XKappa 0.804 # PBE kappa parameter (default 0.804)
end
Specifying Exchange and Correlation approximations individually. The following variables are available for
specifying the exchange and correlation approximations individually and to construct user defined hybrid or “extended”
hybrid functionals:
%method
Exchange X_NOX # no exchange
X_SLATER # Slaters local exchange [18]
X_B88 # Becke 88 gradient exchange [19]
X_G96 # Gill 96 gradient exchange [20]
X_PW91 # Perdew-Wang 91 gradient X [21]
X_mPW # Adamo-Barone modification of PW
(JCP 1997, 108, 664)
X_PBE # PBE exchange [22,24]
X_RPBE # Revised PBE [23]
6.2 Choice of Computational Model 235
Hybrid Density Functionals. The hybrid DFT’s [99, 100] are invoked by choosing a nonzero value for the variable
ACM. (ACM stands for ‘adiabatic connection model’). Specifically, these functionals have the following form:
X X X C C
EXC = aEHF + (1 − a) ELSD + bEGGA + ELSD + cEGGA (6.1)
X X
Here, EXC is the total exchange/correlation energy, EHF is the Hartree-Fock exchange, ELSD is the local (Slater)
X C
exchange, EGGA is the gradient correction to the exchange, ELSD is the local part of the correlation energy and
C
EGGA is the gradient correction to the correlation energy. This brings use to a little bit awkward subject: several
hybrid functionals with the same name give different values in different programs. The reason for this is that they
either choose slightly different default values for the parameters a,b and c and or they differ in the way they treat
the local part of the correlation energy. Different parameterizations exist. The most popular is due to Vosko, Wilk
and Nusair (VWN, [101]). However, VWN in their classic paper give two sets of parameters - one in the main body
(parameterization of RPA results; known as VWN-III) and one in their table 5 of correlation energies (parameterization
of the Ceperly/Alder Monte Carlo results; known as VWN-V). Some programs choose one set, others the other. In
236 6 Detailed Documentation
addition a slightly better fit to the uniform electron gas has been produced by Perdew and Wang [102]. The results
from this fit are very similar to what the parameters VWN5 produce (the fit to the Ceperly Alder results) whereas VWN3
(fit to the RPA results) produces quite different values. To be short - in ORCA almost all functionals choose PWLDA as
the underlying LDA functional. A special situation arises if LYP is the correlation functional [103]. LYP itself is not a
correction to the correlation but includes the full correlation. It is therefore used in the B3LYP method as:
C C C C
EB3LY P = ELSD + c ELY P − ELSD (6.2)
In ORCA VWN5 is chosen for the local correlation part. This choice is consistent with the TurboMole program [104–106]
but not with the Gaussian program [107]. However, the user has full control over this point. You can choose the
underlying local part of any correlation functional with the variable LDAOpt:
%method
LDAOpt C_PWLDA
C_VWN5
C_VWN3
end
Specifying C VWN3 for LDAOpt together with Functional=B3LYP should give results very close to the B3LYP functional
as implemented in the Gaussian series of programs1 .
In particular for the popular B3LYP functional the following aliases are defined in order to facilitate comparisons with
other major electronic structure packages:
%method
Functional B3LYP # consistent with TurboMole
B3LYP_TM # consistent with TurboMole
# = Functional= B3LYP
# LDAOpt = C_VWN5;
B3LYP_G # consistent with Gaussian
# = Functional= B3LYP
# LDAOpt = C_VWN3;
end
One Parameter Hybrid Density Functionals. A few words on the one parameter hybrid methods appears in
order. Through the underlying LDA dependence of the three parameter hybrids different programs give different
answers because they differ in the underlying LDA. On the other hand, it has recently been argued from theoretical
reasoning that the optimal mixing ratio for DFT and HF exchange is 0.25 [109]. Furthermore numerical calculations
have shown that the results of using this fixed ratio and not scaling the GGA correlation or exchange are as good
as the original three parameter hybrids [110]. I personally sympathize with these ideas because they are based on
theory and they remove some arbitrariness from the hybrid procedures. Also the slightly higher HF-exchange (0.25 in
favor of 0.20 used in the original three parameter hybrids) is, I believe, in the right direction. Thus the one parameter
hybrids have the simple form:
1
There is some evidence that the version used in the Gaussian program gives miniscule better results in molecular
applications then the TurboMole variant but the differences are very small [108]
6.2 Choice of Computational Model 237
DF T
EXC = EX + a0 EX
HF DF T
− EX DF T
+ EC (6.3)
with at = 14 which is the same as putting: a = at , b = 1 − at and c = 1 in the three parameter hybrids and this is how
it is implemented. The one parameter hybrid PBE0 has been advertised as a hybrid functional of overall well balanced
accuracy [111].
Extended ‘double’ hybrid functionals. In addition to mixing the HF-exchange into a given DF, Grimme (Grimme,
S.; JCP (2006), 124, 034108) has proposed to mix in a fraction of the MP2 correlation energy calculated with hybrid
DFT orbitals. Such functionals may be refered to as “extended” hybrid functionals. Grimme’s expression is:
HF DF T DF T MP 2
EXC = aEX + (1 − a) EX + (1 − c) EC + cEC (6.4)
%method
ScalHFX = a
ScalDFX = 1-a
ScalGGAC = 1-c
ScalLDAC = 1-c
ScalMP2C = c
end
Grimme recommends the B88 exchange functional, the LYP correlation functional and the parameters a=0.53 and
c=0.27. This gives the B2PLYP functional which appears to be a fair bit better than B3LYP based on Grimme’s
detailed evaluation study.
Presently, this methodology covers single points and analytic gradients (hence all forms of geometry optimization,
relaxed scans, transition state searches and numerical frequencies are supported). Note that you need to choose
%mp2 density relaxed end in order to get the correct response density which is consistent with first order properties
as analytic derivatives. By default this density is not calculated since its construction adds significant overhead to
the calculation. Therefore you have to specifically request it if you want to look at the consistent density. You can
also choose %mp2 density unrelaxed end which would give you the unrelaxed (expectation value like) density of the
method at considerably less computational cost. However, this is not recommended since the changes to the relaxed
density are considerable in our experience and the unrelaxed density has a much weaker theoretical status than its
relaxed counterpart.
Range-separated hybrid functionals. ORCA supports functionals based on the error function splitting of the
two-electron operator used for exchange as first realized by Hirao and coworkers [76]:
−1 −1 −1
r12 = erfc(µ · r12 ) · r12 + erf(µ · r12 ) · r12 (6.5)
| {z } | {z }
SR LR
Rx
where erf(x) = √2π 0 exp(−t2 )dt and erfc(x) = 1 − erf(x). Note that the splitting is only applied to exchange;
one-electron parts of the Hamiltonian, the electron-electron Coulomb interaction and the approximation for the DFT
correlation are not affected. Later, Handy and coworkers generalized the ansatz to: [77]
The splitting has been described in graphical form (according to Handy and coworkers), along the terminology of
ORCA, in Figure 6.1:
100%
ACM-B
80%
DFT exchange
60%
β, RangeSepScal
40%
exact exchange
20%
α, ACM-A
0% ∞
0
r12
Figure 6.1: Graphical description of the Range-Separation ansatz. The gray area corresponds to
Hartree-Fock exchange. α and β follow Handy’s terminology. [77]
The splitting has been used to define the ωB97 family of functionals where the short-range part (SR) is described by
DFT exchange and the long-range part by exact exchange/Hartree-Fock exchange. The same is true for CAM-B3LYP
and LC-BLYP. It is possible to use a fixed amount of Hartree-Fock exchange (EXX) and/or a fixed amout of DFT
exchange in this ansatz.
Functional Keyword fixed EXX variable part µ/bohr-1 fixed DFT-X Reference
ωB97 WB97 — 100% 0.40 — [79]
ωB97X WB97X 15.7706% 84.2294% 0.30 — [79]
ωB97X-D3 WB97X-D3 19.5728% 80.4272% 0.25 — [80]
CAM-B3LYP CAM-B3LYP 19% 46% 0.33 35% [77]
LC-BLYP LC-BLYP — 100% 0.33 — [78]
The currently available speed-up options RIJONX and RIJCOSX. Otherwise, integral-direct single-point calculations
and TDDFT are the only supported job types thus far. In principle, it is possible to change the amount of fixed
Hartree-Fock exchange (ACM-A) and the amount of variable exchange (RangeSepScal) and µ, though this is not
recommended. The amount of fixed DFT Exchange (ACM-B) can only be changed for CAM-B3LYP and LC-BLYP. In
other words, ACM-B is ignored by the ωB97 approaches, because no corresponding µ-independent exchange functional
has been defined.
%method
RangeSepEXX True # must be set
RangeSepMu 0.25 # should not be set to 0.0 or below
RangeSepScal 0.7 # should sum to 1 with ACM-A and ACM-B
ACM 0.2, 0.1, 1.0 # ACM-A, ACM-B, ACM-C
end
6.2 Choice of Computational Model 239
* xyz 0 1
H 0.0 0.0 0.0
H 0.0 0.0 0.7
*
Note: For information on the ACM formalism, see preceding section called “Specifying Exchange and Correlation
approximations individually”. While it is technically possible to choose an exchange functional that has no µ-
dependence, this makes conceptually no sense.
The next subject of importance for the DFT calculation is the size of the integration grid for numerical integration.
Three-dimensional numerical quadrature is necessary due to the complicated analytical form of the exchange-correlation
potential (and energy). The expressions for these quantities are so complicated that there is no hope of finding
analytical solutions to the required integrals and some numerical approximation, commonly three-dimensional numerical
integration, is necessary. The numerical integration [112–117] is a major step in any DFT calculation and if the RI
approximation [115–121] is used for the Coulomb part it usually dominates the total wall clock time.
Accuracy. The good news about the numerical integration is that the effort only increases approximately linearly
with the molecular size such as to make calculations on relatively large molecules not prohibitive [114, 122–124]. The
bad news about numerical integration is that it is not trivial to make it highly accurate. Especially if you choose
relatively small grids it is advisable to check that the results are converged (say to at least ≈1 mEh) by reconverging
the calculation with a larger grid (Grid) and higher radial integral accuracy (IntAcc). As a rule of thumb the error in
the numerically integrated total electron density is on the same order of magnitude as the error in the numerically
integrated XC energy [113]2 . Therefore the program prints this information each iteration (Num. Int. El. :
. . . ).
Rotational Invariance. Through the very fact that a grid is used, the total energy depends on the molecular
orientation which is of course unphysical [125, 126]. Unless the integration grid is large enough to make the dependence
negligible it is therefore not a good idea to calculate closely related molecules in grossly different orientations. This
unpleasant feature arises because ORCA does not yet have a ‘standard orientation’ for molecules like other programs.
Note that other programs also have that rotational variance problem but they hide it through employment of a
standard orientation. Grid free methods to integrate the XC part are known [127–129] and they remove these problems.
However, they will probably not be implemented in the near future into ORCA because they have a less favorable
computational scaling than the numerical integration, requiring a large additional O(N3 ) diagonalization at each
iteration.
Choice of Grid. Several default grids are available in ORCA. They are chosen by specifying the variable Grid.
%method
Grid 0 # product grid
1 # Lebedev 50 (not recommended)
2 # Lebedev 110 points (default for SCF iterations)
3 # Lebedev 194 points (more accurate)
4 # Lebedev 302 points (default for FinalGrid)
2
Actually, the XC energy and potential are somewhat smoother than the density itself leading to the expectation
that the error in the density is a pessimistic estimate of the error in the XC energy.
240 6 Detailed Documentation
Like Functional, Grid is merely a compound variable that affects several other variables that control the details of
grid design. Any of these variables can be specified after Grid in order to change the default values. In general the
grid consists of a series of radial shells around each atom and an angular grid for each radial shell.
Specifying Grid parameters Individually. A particular radial integration method3 is determined by specifying
RadialGrid. In my hands, the default, GaussChebyshev [113, 130], is the most efficient and it is not recommended to
change to EulerMcLaurin [114, 122–124] integration. The number of radial points is determined by the parameter
IntAcc. From IntAcc the number of radial shells for a given atom is computed as (taken from Krack and Köster [130]
ε = 10−IntAcc ):
where nA is the row of the periodic table of element A. The defaults for IntAcc range from ≈3.7 to ≈5.5.4 It is not
recommended to go below 3.5. AngularGrid specifies the largest angular grid to be used (see below).
If SimpleGrid is chosen a product integration is performed over the angular variables with a Gauss-Legendre integration
for θ and equally spaced points for ϕ [114, 122–124]. This integration is useful because it is open ended - the number
of points can be increased ad infinitum. It is however, difficult to imagine situations where the largest Lebedev grid
is still too small. The Lebedev grids [131–137] are generally more efficient (theoretically by a factor 1.5). For the
SimpleGrid the parameter NThetaMax is the number to multiply nrad with to obtain the maximum number of θ points
for a given atom. The number of ϕ points is automatically chosen for a given θ based on a recommendation by
Treutler and Ahlrichs and avoids crowding of points near the poles [113].
Finally BFCut and WeightCut are thresholds. If a gridpoint has a weight smaller than WeightCut it is simply neglected
(Becke scheme). If the weight scheme is chosen according to Weight AtomicXC, the grid point is also neglected if
it gives a contribution of <WeightCut to the promolecular density which is constructed from a superposition of
spherically symmetric atomic densities. BFCut determines when to neglect the contribution of a given basis function
to a given gridpoint or the contribution of a given basis function product to the total density at a given gridpoint.
There was extensive experimentation with these values and they should probably not be changed. In particular, the
results may be quite sensitive to WeightCut (larger values are not recommended) but should be quite stable with
BFCut (smaller values should not change the energy appreciably but may significantly raise the computation time).
%method
RadialGrid GaussChebyshev # (default)
EulerMcLaurin
AngularGrid Lebedev50 # =1
Lebedev110 # =2
Lebedev194 # =3 (default)
3
For the experts - ORCA always uses the mapping M3 and also the atomic size adjustments of Treutler and Ahlrichs
in the radial integration.
4
In general it is usual the angular integration that limits the accuracy. Thus it is a questionable strategy to choose a
small angular grid and then increase IntAcc to a large value.
6.2 Choice of Computational Model 241
Lebedev302 # =4
Lebedev434 # =5
Lebedev590 # =6
Lebedev770 # =7
SimpleGrid # =0
IntAcc 5.0 # determines no. of radial points
NThetaMax 0.7 # only for AngularGrid=0
GridPruning 0 # no Pruning
1 # Grid pruning algorithm 1
2 # Grid pruning algorithm 2 (no longer there)
3 # Grid pruning algorithm 3 (default)
4 # Adaptive grid pruning (no longer there)
WeightScheme Weight_Becke # The Becke weight scheme
Weight_AtomicXC # default. Choose weights from
# superposition of atomic
# exchange densities. Good choice
# for DFT!
HGridReduced true # Reduce grids for H and He by one
# unit (recommended)
BFCut 1e-10 # basis fcn. cut. Is adjusted according to
# convergence tolerances
WeightCut 1e-14 # grid weight cut. default: 1e-14
end
Grid pruning. Like most other programs ORCA ‘prunes’ the angular grids [114, 122–124]. It is well known that the
radial shells close to the nucleus need less angular grid points to achieve high accuracy while those in the bonding
region need larger angular grids. Taking this into account one can save large numbers of grid points (and therefore
computation time) by using smaller angular grids close to the nuclei. There was some experimentation with this
feature and the defaults should probably not be changed.
• GridPruning=3 Here the radial integration is divided into five domains that defined through the numbers γ1
to γ4 [114, 122–124]. There are spheres defined by γi Rmax , where Rmax is Clementi’s radius of the outermost
valence orbital [138]. The angular grids are used in order ng -3, ng -2, ng -1, ng , ng -1 where ng is the size of the
largest angular grid. For example for AngularGrid=4 the Lebedev grids with 50, 110, 194, 302, 194 points are
used in the domains one to five. In my experience this leads to significant reduction in the number of points as
well as small errors (on the order of some µEh ) relative to the unpruned grids of the same size.
Default Grids Having specified the individual parameters, the default grids are characterized by the following
settings:
6 Lebedev590 5.34 40 45 50 55
7 Lebedev770 5.67 45 50 55 60
If no value for Grid is specified in the input, Grid=2 is used for the SCF iterations and Grid=4 for the final energy
(vide infra).
Multigrid feature. The TurboMole developers [104–106] have advocated a method where the SCF iterations are
done with a small grid and gradients and final energies are evaluated on a larger, more accurate grid [113]. Overall
this gives a substantial improvement in speed with no significant loss in accuracy as long as the smaller grid for the
SCF iterations is large enough such that it does not produce significant errors in the final density.
%method
FinalGrid 4 # grid to use for the final energy
# evaluation
end
The grid parameters of the final grid can also be individually specified:
%method
RadialGrid_fin GaussChebyshev
AngularGrid_fin Lebedev434
IntAcc_fin 5.0
NThetaMax_fin 0.7
GridPruning_fin 0
WeightScheme_fin Weight_Becke
HGridReduced_fin true
end
By default the multigrid feature is used and the final grid defaults to grid 4. If you do not want to use the multigrid
feature you have to specify:
%method
UseFinalGrid false
End
Or
! NoFinalGrid
CAUTION:
6.2 Choice of Computational Model 243
• if you use a large grid (i.e. Grid=6) and forget to turn off the multigrid feature the energies you get are only as
accurate as Grid 4.
Post-SCF-GGA Option. For many molecules the cost of evaluating the XC energy and potential on a three
dimensional grid will dominate the overall computational cost. At the GGA level (functionals other than the local
density approximation, LSD and HFS, that incorporate the density gradient) it is often found that the self consistent
electron distribution is rather similar to that obtained from a LSD calculation. However, LSD calculations need a little
bit less time because the derivatives of the basis functions at the grid points are not needed. It may therefore be a
sensible approach to calculate the self consistent electron and spin densities at the LSD level and then obtain the final
total energy at the GGA level. This was advocated by the ADF developers.
%method
PostSCFGGA true
end
What this does is to use the PWLDA local approximation in the SCF iterations and obtain the final energy at whatever
functional was chosen in the input file.
More recent test calculations reveal that the performance gain from using this feature is truly minimal
while the errors introduced in the final energies are large. Further use of this feature is therefore strongly
discouraged.
SpecialGrid Option. Sometimes you will like to increase the integration accuracy for some atoms that need special
care while it is not necessary to enlarge the grid generally. This situation for example arises when the basis set contains
very steep functions on a few atoms that are required in order to calculate core properties such as isotropic hyperfine
couplings. ORCA provides you with a basic mechanism to increase the radial integration accuracy for a few atoms
while maintaining the chosen grid for all others.
%method
# a maximum of 64 assignments can be made
# in = 0 : no changes are made
# in > 0 : the grid will be changed for all atoms with
# atomic number=in to IntAcc=an
# in < 0 : only the specific n’th atom will have its
# IntAcc value changed to an
SpecialGridAtoms i1, i2, i3,...,in;
SpecialGridIntAcc a1,a2,a3,...,an;
end
A very useful approximation that greatly speeds up DFT calculations unless the molecule gets very large is the so
called ‘RI-approximation’ [115–121]. RI stands for ‘Resolution of the identity’. In short, charge distributions arising
from products of basis functions are approximated by a linear combination of auxiliary basis functions.
244 6 Detailed Documentation
X
φi (~r) φj (~r) ≈ cij
k ηk (r) (6.8)
k
There are a variety of different possibilities to determine the expansion coefficients cij
k . A while ago Almlöf and
coworkers [139] have shown that for the approximation of electron repulsion integrals the best choice is to minimize
the residual repulsion 5 .
Define:
X
Rij ≡ φi (~r) φj (~r) − cij
k ηk (~
r) (6.9)
k
and
Z Z
1
Tij = Rij (~r) Rij (~r) d3 rd3 r0 (6.10)
|~r − ~r0 |
1
(~r) d3 rd3 r0 , leading to
RR
and determine Tij = Rij (~r) |~
R
r 0 | ij
r −~
where:
−1
tij
k = φi φj r12 ηk (6.12)
−1
Vij = ηi r12 ηj (6.13)
−1 X ij kl
φi φj r12 φk φl ≈ cp cq Vpq (6.14)
p,q
X X X
V−1 tij V−1 tkl
= Vpq pr r qs s
p,q r s
X
V−1 tij tkl
= rs r s
(6.15)
r,s
and the total Coulomb energy becomes (P is the total density matrix):
XX
−1
EJ = Pij Pkl φi φj r12 φk φl (6.16)
i,j k,l
5
But note that the basic theory behind the method is known for a long time, at least since the late sixties have
methods similar to the RI approximation been used, mainly in the context of ‘approximate ab initio methods’
such as LEDO, PDDO and MADO but also in density functional theory in the mid and late seventies by Baerends
, Dunlap and others [115–117, 121]
6.2 Choice of Computational Model 245
XX X
V−1 tij tkl
≈ Pij Pkl rs r s
i,j k,l r,s
X X X
V−1 Pij tij Pkl tkl
= rs r s (6.17)
r,s i,j k,l
| {z }| {z }
Xr Xs
In a similar way the Coulomb contribution to the Kohn-Sham matrix is calculated. There are substantial advantages
from this approximation: the quantities to be stored are the matrix V−1 which depends only on two indices and the
three index auxiliary integrals tij
r . This leads to a tremendous data reduction and storage requirements relative to a
four index list of repulsion integrals. Furthermore the Coulomb energy and the Kohn-Sham matrix contributions can
be very quickly assembled by simple vector/matrix operations leading to large time savings. This arises because each
auxiliary basis function ηk (~r) appears in the expansion of many charge distributions φi (~r) φj (~r). Unfortunately a
similar strategy is less easily (or with less benefit) applied to the Hartree-Fock exchange term. In addition, the two
and three index electron repulsion integrals are easier to compute than the four index integrals leading to further
reductions in processing time.
If the auxiliary basis set {η} is large enough, the approximation is also highly accurate. Since any DFT procedure
already has a certain, sometimes sizable, error from the noise in the numerical integration of the XC part it might be
argued that a similarly large error in the Coulomb part is perfectly acceptable without affecting the overall accuracy
of the calculation too much. Furthermore the errors introduced by the RI method are usually much smaller than the
errors in the calculation due to basis set incompleteness in the first place. I therefore recommend the use of the RI
procedure for pure DFT’s. However, one should probably not directly mix absolute total energies obtained from RI
and non-RI calculations because the error in the total energy accumulates and will rise with increasing molecular size
while the errors in the relative energies will tend to cancel.
There are several choices for AUX basis sets described in the next section which depend on the choice of the primary
GTO basis used to expand the molecular orbitals6 .
%method
RI on # do use the RI-J approximation
off # do not use the RI-J approximation
end
Recall:
• If you use RI you must specify an auxiliary basis set in the %basis section. For some standard bases the
program will automatically choose an AUX basis. However, it is poor practice to rely on an adequate automatic
choice.
6
It probably should be noted that a slightly awkward step in the procedure is the inversion of the auxiliary integral
matrix V which can easily become very large. Matrix inversion is an O(N3 ) process such that for large molecules
this step takes some real time. However, in ORCA this is only done once during the calculation whereas other
programs that constrain the fit to also exactly reproduce the number of electrons need to perform a similar process
each iteration. Starting from Version 2.2.09 ORCA implements Cholesky decomposition in favor of matrix inversion
which removes any bottleneck concerning the solution of the linear equation system.
246 6 Detailed Documentation
There is an improved version of the RI-algorithm that has been implemented in version 2.2.09. This algorithm yields
the same Coulomb energy as the standard RI-algorithm but is significantly faster if the basis set contains many high
angular momentum functions (d-, f-, g-functions). For small basis sets there is virtually no difference between the two
algorithms except that Split-RI-J uses more memory than standard RI. However, calculations with ca. 2000 basis
functions need about 13 MB extra for Split-RI-J which is a trivial requirement on present day hardware.
! Split-RI-J
Split-RI-J is presently only available for SCF calculations. The gradient, coupled-perturbed Kohn-Sham and TD-DFT
modules will use the standard RI approximation instead.
NOTE:
• The Split-RI-J algorithm is the default if RI is turned on via ! RI. If you do not want to use Split-RI-J please
insert the keyword ! NoSplit-RI-J
6.2.2.5 Using the RI Approximation for Hartree-Fock and Hybrid DFT (RIJONX)
The RI approximation can be used, although with less benefit, for hybrid DFT and Hartree-Fock (RHF and UHF)
calculations. In this case a different algorithm7 is used that allows a fair approximation to the Hartree-Fock exchange
matrix. In my experience it is difficult to make this approximation highly accurate. It is, however, usefully fast
compared to direct SCF if the molecule is ‘dense’ enough. There are special auxiliary basis sets that were taken from
the TurboMole libraries and were originally developed for RI-MP2 calculations [140].
%method
RI on # do use the RI approximation
end
%basis
Aux SV_C # (=VDZ_C) aux basis for the SVP
# and comparable orbital bases
TZV_C # (=VTZ_C) aux basis for the TZVP
# and comparable orbital bases
TZVPP_C # (=VTZPP_C) aux basis for the VTZPP
# and comparable orbital bases (very large)
QZVP_C # aux basis for QZVP (even larger)
QZVPP_C # aux basis for QZVPP
7
This algorithm was described by Kendall and Früchtl [118].
6.2 Choice of Computational Model 247
NOTE:
• There has been little experimentation with this feature. It is provided on an experimental basis here.
Another feature that was implemented is to use the RI method for the Coulomb term and the standard treatment for
the exchange term. This method is called RIJONX because the exchange term should tend towards linear scaling for
large molecules. You can use this feature for Hartree-Fock and hybrid DFT calculation by using:
%method
RI on # do use the RI approximation
RIFlags 1 # ...but treat exchange exactly
end
! RIJONX
The requirements for the auxiliary basis are the same as for the normal RI-J method.
6.2.2.6 Using the RI Approximation for Hartree-Fock and Hybrid DFT (RIJCOSX)
The aim of this approximation is to efficiently compute the elements of exchange-type matrices:8
X
Kµν = Pκτ (µκ|ντ ) (6.18)
κτ
where P is some kind of density-type matrix (not necessarily symmetric) and the two-electron integrals are defined
over the basis set {ϕ} by:
Z
−1
(µκ|ντ ) = µ(r1 )κ(r1 )ν(r2 )τ (r2 )r12 dr1 dr2 (6.19)
X X X
Kµν ≈ Xµg Aυτ (rg ) Pκτ Xκg (6.20)
g τ κ
Z
ν(r)τ (r)
Aυτ (rg ) = dr (6.22)
|r − rg |
where wg denotes the grid weights. Thus, the first integration is carried out numerically and the second one analytically.
Note that this destroys the Hermitian character of the two-electron integrals.
Fτ g = (PX)τ g (6.23)
X
Gνg = Aντ (rg )Fτ g (6.24)
τ
As such the equations are very similar to the pseudo-spectral method extensively developed and discussed by Friesner
and co-workers since the mid 1980s and commercially available in the Jaguar quantum chemistry package. The
main difference at this point is that instead of Xκg there appears a least-square fitting operator Qκg in Friesner’s
formulation. Note that an analogue of the fitting procedure has also been implemented in ORCA, which however
does not need specially optimized grids as in Friesner’s pseudospectral method. The basic idea is to remove the grid
errors within the basis set by “fitting” the numerical overlap to the analytical one. Due to its nature, overlap fitting is
supposed to work better with larger basis sets.
Given the exchange matrix, the exchange energy is given by (a sum over spin cases is left out here for simplicity):
1X
EX = Pµν Kµν (P) (6.26)
2 µν
Assuming that EX refers to the nonrelativistic, variational SCF energy, the derivative with respect to parameter λ
can be re-arranged to the following form:
∂EX X X ∂Fµg
≈2 Gνg (6.27)
∂λ g µν
∂λ
with:
∂Fµg X ∂Xµg
= wg1/2 Pκµ (6.28)
∂λ κ
∂λ
6.2 Choice of Computational Model 249
In this formulation, the gradient arises as a minor modification of the exchange matrix formation code. In particular,
the derivatives of the analytic integrals are not needed, merely the derivatives of the basis functions on the grid.
In our implementation, we have defined grids of increasing quality. Higher and more accurate (and more expensive)
grids for the COSX approximation are chosen by increasing n from 1 to 9 in
! GridXn
From version 2.9, overlap fitting is used by default. This means that there might be some differences with respect to
previous versions. Firstly, smaller grids are used by default. The old default grid can be retained by typing
! GridXOLD
If consistency with previous versions of ORCA is desired, overlap fitting can be removed using the keyword !NoSFitting.
Note that overlap fitting yields better results as the basis and/or the grid increases. It was adapted as the default
procedure with the smallest reliable grid, but it is compatible with all possible grids. Grids tested in the overlap
fitting paper ( [141]) are available as !GridXS1 and !GridXS2. The latter grid is the default.
For expert users, the grid parameters for the exchange grids can be even more finely controlled:
%method
IntAccX Acc1, Acc2, Acc3
GridX Ang1, Ang2, Ang3
XCorrection Corr1, Corr2, Corr3
UseFinalGridX true
end
There are three grids involved: the smallest grid (Acc1, Ang1) that is used for the initial SCF iterations, the medium
grid (Acc2, Ang2) that is used until the end of the SCF and the largest grid (Acc3, Ang3) that is used for the
final energy and the gradient evaluations. UseFinalGridX turns this last grid on or off. ‘Accn’ refers to the radial
integration accuracy, GridX refers to the angular grid resolution and XCorrection (=0 or 1) refers to the method used
for correcting the grid error. For ‘0’ no one-center correction is applied, for ‘1’ a one-center correction is computed
analytically for the two-electron integrals. Note that in cases where convergence difficulties arise, it is advisable to
increase the smallest grid to a larger value, or even equal to the medium grid using the Acc1, Ang1 parameters.
%method
UseSFitting false # equals to NoSFitting in the simple
# input. Default is true.
UseQGradFit true # uses the SCF fitting matrix for
# gradient calculations. Default
# is false.
end
Note that overlap fitting works for HF and MP2 gradients as well without specifying any additional keyword. The
UseQGradFit parameter merely uses the same fitting matrix for the gradients as for the energy calculation. However,
this does not save significant time, neither is it more accurate, therefore it is turned off by default.
250 6 Detailed Documentation
Other then the !Gridn (where n is an integer number) keywords used to specify the DFT integration grids, the grid
structures used for HF exchange evaluation, called by the keywords !GridXn have also been discussed in previous
chapters. The purpose of this chapter is to give a more specific introduction into the properties of COSX grids, and
discuss some more common problems while using these.
As a start, it will be useful to relate the simple keywords GridXn, to the method block keywords detailed above.
Sometimes it is necessary to increase the grids using the method block parameters directly, as they provide a more
flexible control over the grid size. For some of the more common grids the simple keywords and the equivalent method
block parameters are given below
!GRIDX4
%method
GridX 1,1,3
IntAccX 3.34,4.01,4.34
end
!GRIDX5
%method
GridX 1,1,3
IntAccX 3.67,4.01,4.67
end
!GRIDX6
%method
GridX 1,2,3
IntAccX 3.67,4.01,4.34
end
!GRIDX7
%method
GridX 1,2,4
IntAccX 3.67,4.01,4.34
end
!GRIDXS2
%method
GridX 1,1,2
IntAccX 3.34,3.67,4.01
end
Symptoms of convergence issues: Erratic convergence behavior, often starting from the first SCF step, or possibly
setting in at a later stage, producing crazy energy values, with “megahartree” jumps. If overlap fitting is on, the
following error message may also be encountered: “Error in Cholesky inversion of numerical overlap”.
6.2 Choice of Computational Model 251
Convergence issues may arise when the chosen grid has difficulties in representing the basis set. This is the “grid
equivalent” of a linear dependence problem, discussed in 6.3.4. It should also be mentioned that the grid related
problem discussed here often goes hand in hand with basis set linear dependence, although not necessarily. The most
straightforward way of dealing with these is to increase the size of the integration grid. This however, is not always
desirable or possible, and in the remainder of this chapter some other methods will be discussed.
One way to avoid the Cholesky inversion issue is to turn overlap fitting off (!NoSFitting), however, this means that
the numerical problems are still present, only they are ignored. Due to the fact that overlap fitting operates with
the numerical overlap, and its inverse, it is more sensitive to linear dependence issues, and turning off the fitting
procedure may lead to convergence. This may be a pragmatic, but by no means clean solution, since it relies on the
assumption that the numerical errors are small.
On the other hand, overlap fitting also gives a similar tool to deal with linear dependence issues as the one discussed
in 6.3.4 for basis sets. The eigenvalues of the numerical overlap can be inspected similarly, and small values can be
screened out. There is unfortunately no universal way to determine this screening parameter, but see 6.3.4 for typical
values.
The parameters influencing the method used for inversion and obtaining the fitting matrix are
%method
SFitInvertType Cholesky # Use Cholesky inversion. Default
Cholesky_Q # Cholesky + full Q matrix
Diag # Inversion via diagonalization
Diag_Q # Diag + full Q matrix
SInvThresh 1e-8 # inversion threshold for Diag and Diag_Q, default 1 e-8
end
By default, the inversion procedure proceeds through Cholesky decomposition as the fastest alternative. Ideally the
overlap matrix is non-singular, as long as the basis set is not linear dependent. For singular matrices the Cholesky
procedure will fail. It should be noted at this point that the numerical overlap can become linear dependent even
if the overlap of basis functions is not, and so a separate parameter will be needed to take care of grid related
issues. To achieve this, a diagonalization procedure (Diag) can be used instead of Cholesky with the corresponding
parameter to screen out eigenvectors belonging to eigenvalues below a threshold (SInvThresh). For both Cholesky
and diagonalization procedures a ‘full Q’ approach is also available (Cholesky Q and Diag Q), which corresponds to
the use of a more accurate (untruncated) fitting matrix.
ORCA features a method that gives the exact Coulomb term at significantly reduced computational cost. It can most
profitably be applied to the case where no HF exchange is present. Thus if you use LDA or GGA functionals and
you do not want to apply the RI approximation (perhaps because you use a special basis set for which no fit-set is
available), the Split-J is an attractive alternative to the traditional evaluation. The advantages of Split-J increase
with the quality of the basis set used, i.e. if you have basis sets with high-angular momentum functions split-J can be
more effective by a factor of 2-5 compared to the traditional evaluation. For smaller basis sets (i.e. SV(P) and the
like) the advantages are smaller but still significant. However, Split-J is also significantly slower than RI-J (but recall
that Split-J is exact while RI-J is an approximation).
The definition of the standard basis sets and computational levels is described below. As explained in section 6.2
these features designed in the hope to assist the user in carrying out well reproducible calculations at a consistent
level of theory and a reasonable balance between cost and accuracy with a minimum of input.
Calculation-Level
Quick Quick Medium Good DFT DFT
Parameter Acc Opt
DFT Opt Opt Opt Energy Energy+
RunTyp Energy Opt Opt Opt Opt Energy Energy
Functional BP BP BP BP BP B3LYP B3LYP
Basis1 1 1 2 3 4 4 5
RI On On on on on off2 off2
SCFConv Loose Tight Tight Tight Tight Normal Normal
GeoConv - Normal Normal Normal Tight - -
3
Grid 2/3 2/4 2/4 3/5 4/5 4/5 4/5
1 – these bases refer to the ORCA default bases that are based on the Ahlrichs SV and TZV basis sets to be described below
2 – The RI approximation can be used in these calculations by using ! RIJONX in the input
3 – The first and second number refer to the dual-grid feature of ORCA
You can easily override these defaults by simply typing the appropriate keyword that changes one of the settings given
above (for example if you want MediumOpt but with the PBE functional simply give ! MediumOpt PBE).
The default-basis sets are of increasing quality and are defined below:
A special feature of these basis sets is that the appropriate auxiliary basis for DFT within the RI approximation is
automatically selected.
6.2 Choice of Computational Model 253
Introduction
DFT-D3 is an atom-pairwise (atom-triplewise) dispersion correction which can be added to the KS-DFT energies and
gradient [2]:
Edisp is then the sum of the two- and three-body contributions to the dispersion energy: Edisp = E (2) + E (3) . The
most important is the two-body term which is given at long range by:
X X CnAB
Edisp = − sn n
(6.30)
A<B n=6,8
rAB
CnAB denotes the averaged (isotropic) nth-order dispersion coefficient for atom pair AB, and rAB is their internuclear
distance. sn is a functional-dependent scaling factor (see below). In the general case, an adequate damping function
must be employed.
Damping Functions
In order to avoid near singularities for small rAB , the dispersion contribution needs to be damped at short distances.
One possible way is to use rational damping as proposed by Becke and Johnson [142–144]:
X X CnAB
E (2) = − sn n
(6.31)
A<B n=6,8
rAB + f (R0AB )n
with [144]
s
C8AB
R0AB = (6.32)
C6AB
and
Damping the dispersion contribution to zero for short ranges (as in Ref. [2]) is also possible:
X X CnAB
E (2) = − sn n
fd,n (rAB ) (6.34)
A<B n=6,8
rAB
with
1
fd,n = rAB −αn
(6.35)
1 + 6( s AB )
r,n R0
Note that the R0AB used with this damping are from Ref. [2]. For more information on the supported damping
functions, see Ref [74]. In the ORCA program the dispersion correction with zero damping is invoked by the keyword
254 6 Detailed Documentation
! D3ZERO. The default is the recommended variant with Becke-Johnson damping and is invoked by the keyword !
D3BJ or simply ! D3.
Three-body term
It is possible to calculate the three-body dispersion contributions with DFT-D3, according to
where θa , θb and θc are the internal angles of the triangle formed by rAB , rBC and rCA . The C9 coefficient is
approximated by
q
C9ABC ≈ − C6AB C6AC C6BC . (6.37)
The three-body contribution has a small effect on medium-sized molecules and is damped according to equation 6.36.
The damping function fd,(3) (rABC ) is similar to the one shown in equation 6.35 with rABC being the geometric mean
of rAB , rBC and rCA . It can be used with both variants of the E (2) term. However, the three-body term itself will
always be calculated using the zero damping scheme. Furthermore, only numerical gradients are available. Adding
three-body correction is a rather new feature, but has proven to give quite accurate results for the thermochemistry of
supramolecular systems [145]. In the ORCA program, the dispersion correction with zero damping and the three-body
contribution is invoked by the keyword ! D3ZERO ABC. Becke-Johnson damping for E (2) and zero damping for E (3) is
invoked by ! D3BJ ABC.
Options
Note that correcting Hartree-Fock (HF) is only parameterized with BJ-damping. For a constantly updated list of
supported functionals, check the website of the Grimme group [146]. If there is a functional on this website that is
parametrized, but the parameters are not implemented into the ORCA program yet, you can specify the parameters
manually as shown below (using the respective parameters from Ref. [146]). In the same fashion, one could also use
own parameters but this is not recommended.
Important: GGA and hybrid functionals should only be used with s6 = 1.0 to ensure asymptotically correct
behaviour. Double-hybrid functionals already account for parts of the dispersion interaction and should therefore be
used with s6 < 1.0. Within the “%method” block it is possible to change the parameters s6, a1, s8 and a2 for the
variant with Becke-Johnson damping.
! d3bj b2plyp
%method
D3S6 0.64
D3A1 0.3065
D3S8 0.9147
D3A2 5.0570
end
The variant with zero damping offers the parameters s6, rs6, s8 and α6 .
6.2 Choice of Computational Model 255
! d3zero blyp
%method
D3S6 1.0
D3RS6 1.094
D3S8 1.682
D3alpha6 14
end
If a geometry optimization is performed (! opt) then the program automatically calls the DFT-D3 gradient. There
are also special functional parameters, which were optimized for triple-zeta basis sets. This option is is only available
with zero damping and can be invoked by the keywords ! D3ZERO D3TZ. Preliminary results in the SI of Ref. [2]
indicate that results are slightly worse than with the default parameters and QZVP type basis sets. This option
should be carefully tested for future use in very large computations.
The output for the dispersion correction in the ORCA output will look like this:
-------------------------------------------------------------------------------
DFT DISPERSION CORRECTION
DFT-D V3
parameters
s6 scaling factor : 1.0000
a1 scaling factor : 0.4289
s8 scaling factor : 0.7875
a2 scaling factor : 4.4407
ad hoc parameters k1-k3 : 16.0000 1.3333 -4.0000
E6 /kcal : -0.390909076
E8 /kcal : -0.172162510
% E8 : 30.575598941
------------------------- ----------------
Dispersion correction -0.000897312
------------------------- ----------------
------------------------- --------------------
FINAL SINGLE POINT ENERGY -188.137098479095
------------------------- --------------------
Edisp is given as the “Dispersion correction”. It will be automatically included into the singlepoint energy. As
discussed above, the parameters s6, a1, s8 and a2 may be defined manually by:
In the same fashion as above, the s6, rs6, s8 and the exponent α6 can be defined by the user. The next example shows
this along with the call for the three-body correction using ABC:
D3S8 0.7220
D3ALPHA6 14.0
end
*xyz 0 1
C 0.000000 0.000000 0.000000
O 0.000000 0.000000 1.400000
O 0.000000 0.000000 -1.400000
*
6.2.2.11 DFT Calculations with the Non-Local, Density Dependent Dispersion Correction:
DFT-NL
Accounting for the missing van der Waals (vdW, dispersion) forces in standard Kohn – Sham Density Functional
Theory (DFT) has become essential in many studies of chemical and physical electronic structure problems. Common
approaches use atom pair-wise additive schemes as the popular DFT-D3 [2, 74] method, which is also available in
ORCA by invoking the keyword “! D3” (for more information see section 6.2.2.10).
A different route is followed by the van der Waals Density Functional (vdW-DF) as pioneered by Langreth and
Lundquist [147]. These methods use as input to compute the Non-Local (NL) dispersion contribution only the electron
density. The recently developed vdW functional VV10 of Vydrov and Van Voorhis [148] currently seems to be the
most promising candidate for a general and accurate electronic structure method.
We use the term DFT-NL for any (hybrid)GGA density functional in combination with the non-local part of the
VV10 functional with an optimized parameter b, which will be defined below. The performance of these methods has
been evaluated in Ref. [149] using the GMTKN30 [150–152] database and the S66 set [153]. The performance of weak
hydrogen bonds were evaluated in Ref. [154].
We recommend the DFT-D3 dispersion correction in general and the DFT-NL method for checking purposes by
single-point calculations. DFT-NL and DFT-D3 perform very similar but NL is to be preferred for metallic systems or
when the basic electronic structure changes significantly (e.g. oxidations or ionizations). Because the NL correction
increases the computational cost in particular of GGA treatments using RI significantly, it is more useful in combination
with hybrid functionals (and RIJK or RIJCOSX techniques) where the computational overhead is marginal if it is
done non-selfconsistently (see below).
The total exchange-correlation (XC) energy of VV10 type functionals is defined in eq. 6.38. It is composed of standard
exchange (X) and correlation (C) parts and the non-local (NL) term, which covers (mainly) long-range dispersive
energy:
DF T −N L (hybrid)GGA GGA V V 10
EXC = EX + EC + Ec−N L (6.38)
Z Z
V V 10 1 0 0 0
Ec−N L = drρ(r) β + dr ρ(r )ϕ(r, r ) (6.39)
2
where ρ is the total electron density, and the definition of the kernel ϕ(r,r’) and β is as follows (in a.u.):
0
3
ϕ r, r = − 2gg0
(g+g0 ) g (r) = ω0 (r) R2 + κ(r) R = |r − r0 |
258 6 Detailed Documentation
r 4 h i1/6
3 3/4
C ∇ρ(r)
ρ(r) 1
ω0 (r) = + 4π
ρ(r) κ (r) = b 3π β=
ρ(r) 3 2 9π 32 b2
In the original definition, the short-range attenuation parameter b appearing in κ and β was fitted to the S22 set [155]
of non-covalent interactions (b=5.9 for the rPW86PBE GGA). The other parameter C=0.0093 appearing in ω0,
which determines the long-range behavior, was set to its original value. Other DFT-NL functionals are constructed
analogously. For a detailed discussion of the derivation of the formulas and their physical meaning and basis see the
references given and those given therein.
The defined energy of the non-local DFT-NL exchange-correlation functional can computed non-self-consistently based
on a converged SCF density but a self-consistent treatment is also possible. We take B3LYP as an example.
In our implementation of the non-self-consistent B3LYP-NL functional, in the first step a self-consistent B3LYP
computation is performed. In the second step the optimized electron density from the B3LYP computation is taken as
input for the energy calculation of the non-local part. This procedure is invoked by the combination of the keywords
“! B3LYP NL”. Use of the keywords “ ! B3LYP SCNL” would request a self-consistent treatment in which orbitals and
density are optimized in the presence the full B3LYP-NL exchange-correlation potential (see below). According to
many test calculations, an SCNL treatment is rarely necessary for normal energy evaluations.
The computation of the double-integral given in eq. 6.39 requires using an integration grid, just like for normal
exchange-correlation functionals. The grid size is used analogously to the regular grids available in the ORCA program
and can be specified by invoking the keyword “! vdwgridX”, where “X” can be 1,2,3,4,5,6 and 7. The default grid
size is “! vdwgrid2”. In test calculations we found, that going beyond grid size of 3 is not necessary in normal
applications.
In the following we compute the energy of an argon dimer at the distance of 3.76 Å with the def2-TZVP basis set
using the B3LYP hybrid functional as an example with the non-self-consistent variant of the DFT-NL dispersion
correction. The original VV10 method is based on the rPW86PBE GGA.
! b3lyp nl
! def2-tzvp def2-tzvp/jk rijk grid4 vdwgrid2 nofinalgrid nososcf nopop
*xyz 0 1
Ar 0.0 0.0 0.0
Ar 0.0 0.0 3.76
*
-------------------------------------------------------------------------------
DFT-NL dispersion correction
-------------------------------------------------------------------------------
SC Energy -1054.960659618
NL parameter b = 4.80
NL Energy 0.209416556
SC+NL Energy -1054.751243062
NL done in 0.3 sec
-------------------------------------------------------------------------------
6.2 Choice of Computational Model 259
----------------
TOTAL SCF ENERGY
----------------
Components:
Nuclear Repulsion : 45.59931263 Eh 1240.82038 eV
Electronic Energy : -1100.35055569 Eh -29942.06085 eV
NL Energy : 0.20941656 Eh 5.69851 eV
Here we find the B3LYP total energy (“SC Energy”) of -1054.9607 Hartree, the parameter b = 4.8, the non-local
contribution (“NL Energy”) of 0.2094 Hartree and the final total energy (“SC+NL Energy”) of -1054.7512 Hartree,
which is the sum of the SC and NL energy. In the “Components” section the non-local-contribution is listed separately
(“NL Energy”) in order to be consistent with the “! SCNL” option (see below).
In the current version of ORCA there are seven GGA and hybrid functionals available, which can be used with the
DFT-NL method. The GGA functionals are rPW86PBE (b=5.9), BLYP (b=4.0) and revPBE (b=3.7). The hybrid
functionals are B3LYP (b=4.8), B3PW91 (b=4.5), revPBE0 (b=4.3) and revPBE38 (b=4.7). In addition, we also
added the non-local term to Hartree-Fock (HF) with a parameter of b=3.9. The parameter C was not changed.
All these functionals are ready to use by invoking the keyword “! DF NL”, where DF stands for the seven density
functionals. Hartree-Fock is invoked with the keyword “! HF NL”.
All DFT-NL methods can be used for closed shell and open shell systems.
All density functionals that are available in ORCA (but for which no b parameter has been determined yet) can also
be used with the DFT-NL method by providing a value for the parameter b as shown here:
%method
NLb 5.0
End
For example, for the functional BP86 the parameter b has not been fitted yet and, therefore, using the option “!
BP86 NL” will give an error, but by providing a parameter b (5.0 just as an example!) one can use this functional in
combination with the DFT-NL dispersion correction. Users who want to use such new combinations might contact
the Grimme group.
! bp86 nl
! def2-tzvp def2-tzvp/j ri grid4 vdwgrid2 nofinalgrid nososcf nopop
%method
NLb 5.0
end
*xyz 0 1
Ar 0.0 0.0 0.0
Ar 0.0 0.0 3.76
*
In addition, for any of the already fitted functionals one can define a user specific value for the parameter b, which
might be different to the default value, therefore, overriding the default parameter b. For example, for B3LYP the
fitted parameter is b=4.8 which is changed below to a more repulsive value of b=5.2.
260 6 Detailed Documentation
! b3lyp nl
! def2-tzvp def2-tzvp/jk rijk grid4 vdwgrid2 nofinalgrid nososcf nopop
%method
NLb 5.2
end
*xyz 0 1
Ar 0.0 0.0 0.0
Ar 0.0 0.0 3.76
*
The other parameter C=0.0093 appearing in ω0 may also be changed with the “NLC” keyword as shown in the following
example. Of course, both parameters b and C can be changed with the keywords “NLb” and “NLC” at the same time.
! b3lyp nl
! def2-tzvp def2-tzvp/jk rijk grid4 vdwgrid2 nofinalgrid nososcf nopop
%method
NLC 0.0083
end
*xyz 0 1
Ar 0.0 0.0 0.0
Ar 0.0 0.0 3.76
*
Self-consistent calculations with the DFT-NL dispersion correction are possible by invoking the keyword “! SCNL” in
combination with one of the available density functionals (rPW86PBE, revPBE, BLYP, B3LYP, B3PW91, revPBE0
and revPBE38). However, as explained above any density functional can be used also in combination with the “SCNL”
keyword by providing a parameter b with the “NLb” keyword. Note, that due to technical reasons self-consistent
calculations are not possible with the Hartree-Fock method.
In the following example we use the B3LYP hybrid functional with the self-consistent DFT-NL variant:
! b3lyp scnl
! def2-tzvp def2-tzvp/jk rijk grid4 vdwgrid2 nofinalgrid nososcf nopop
*xyz 0 1
Ar 0.0 0.0 0.0
Ar 0.0 0.0 3.76
*
-------------------------------------------------------------------------------
Selfconsistent DFT-NL dispersion correction
-------------------------------------------------------------------------------
NL parameter b = 4.80
--------------
SCF ITERATIONS
--------------
ITER Energy Delta-E Max-DP RMS-DP [F,P] Damp
0 -1054.7512430617 0.000000000000 0.00166322 0.00007167 0.0007919 0.0000
1 -1054.7512472736 -0.000004211912 0.00077400 0.00002662 0.0005919 0.0000
2 -1054.7512477044 -0.000000430774 0.00004435 0.00000152 0.0000304 0.0000
**** Energy Check signals convergence ****
*****************************************************
* SUCCESS *
* SCF CONVERGED AFTER 3 CYCLES *
*****************************************************
----------------
TOTAL SCF ENERGY
----------------
Components:
Nuclear Repulsion : 45.59931263 Eh 1240.82038 eV
Electronic Energy : -1100.35056030 Eh -29942.06097 eV
NL Energy : 0.20940947 Eh 5.69832 eV
The procedure for the self-consistent computation is similar to the non-self-consistent one: In the first step a self-
consistent B3LYP run is performed and in the second step the converged electron density is used as input for the
self-consistent SCNL run, as shown in the output example above.
In the output the “Total Energy” is the energy of an exchange-correlation functional (B3LYP) plus the non-local (NL)
contribution. In the “Components” section the non-local contribution (“NL Energy”) is listed separately in order to
be consistent with the “! NL” option (see above).
As can be seen from this example only two cycles of the self-consistent NL run were performed. The difference in
energy (5.0e-06) by comparing the self-consistent (-1054.751248) and non-self-consistent (-1054.751243) computations
is very small which seems to be typical also even for larger systems.
In the current version of ORCA analytical gradients for any DFT-NL dispersion correction are not available and,
therefore, geometry optimizations are not possible using analytical gradients. As mentioned above we recommend to
use DFT-D3 optimized geometries for single point DFT-NL calculations.
6.2.2.12 DFT and HF Calculations with the geometrical Counterpoise Correction: gCP
The central idea of the gCP correction [156] is to add in a semi-empirical fashion a correction ∆EgCP to the energies
of molecular systems, in order to remove artificial overbinding effects from BSSE (see section 5.1.6). The correction
uses atomic corrections and thus also yields the ability to correct for intramolecular BSSE. The parametrization is
262 6 Detailed Documentation
Table 6.5: Overview of parametrized basis sets. The level keyword in !GCP(level) is a com-
pound of HF or DFT and the basis set keyword. Valid examples are: !GCP(HF/MINIS),
!GCP(DFT/LANL), !GCP(HF/TZ), !GCP(DFT/631GD) · · ·
parametrized basis set HF DFT basis set keyword
MINIS yes yes MINIS
SV yes yes SV
6-31G(d) yes yes 631GD
6-31G(d) + LANL2DZ (Sc-Zn) no yes LANL
def2-SV(P) no yes SV(P)
def2-SV(P/h,c) no yes SVX or SV(P/H,C)
def2-SVP yes yes SVP
def2-TZVP yes yes TZ
constructed such that it approximates the Boys and Bernadi counterpoise (CP) correction ∆ECP in the intermolecular
case
∆ECP ≈ ∆EgCP , (6.40)
which is also done in ORCA. The FINAL SINGLE POINT ENERGY is the sum of the HF/DFT energy and the gCP
correction.
Analytical gradients are available for geometry optimization. Due to its semi-empirical nature the correction itself is
calculated within seconds even for very large systems.
The correction can be invoked by using !GCP(level) keyword, where level is a compound of the method (=HF or
DFT) and the basis set. See table 6.5 for the available basis sets and the corresponding keyword. For a B3LYP
calculation using the def2-SV(P) basis set a typical input would be:
The output states the level, the 4 parameters mentioned above and the correction itself:
6.2 Choice of Computational Model 263
------------------------------------------------------------------------------
------------------------------------------------------------------------------
Method: dft/sv(p)
------------------------- --------------------
FINAL SINGLE POINT ENERGY -152.809257799447
------------------------- --------------------
There may be issued several warnings and notices: Elements of the 4th and higher period are treated as their 3rd
period analog, i.e. Sn is treated as if it were Ge in terms of parameters. If this is the case a notice is printed. If an
element has no parameters it will give no contributions to the correction. Both cases can occur at once:
! HF SV GCP(hf/minis)
*xyzfile 0 1 example.xyz
Method: hf/minis
This is done for the user convenience. It enables the computation of molecules that has un-parametrized elements. If
only one or a few atoms in a larger molecule is treated inaccurate or not at all the error can be expected to be small.
In case of a mismatch between the ORCA basis set and the selected basis set for gCP another warning is printed.
This was done on purpose in above’s example (GCP(hf/minis) instead of GCP(hf/sv)). This is meant to be a safety
check. However, a small deviation may cause only a minor error (be careful nonetheless!). Use your own judgment if
you want to use an unparametrized basis sets: Number of basis functions and exponents should be very similar!
For debug issues, !LARGEPRINT will print additional information about parameters and individual atomic contribu-
tions.
The gCP input can also be defined through the method section
264 6 Detailed Documentation
%method
DoGCP true/false # turn gCP on/off
GCPMETHOD "method" # define method string for otool gcp, eg. dft/svp
GCP.D3MINIS true/false # use special DFT-D3 refit for HF/MINIS (default=true)
end
Further comments:
CP(HF/MINIS) sets automatically the refitted D3 parameter as proposed in the original gCP paper.
The gCP method is implemented via an external tool called otool gcp, which is based on the original Fortran program
used in the publication. Thus, the otool gcp binary can also be called directly via the command line (otool gcp -h gives
an overview of the options). It is also possible to read an external parameter file ($HOME/.gcppar) using !GCP(FILE).
For further information, please look at the manual for the gcp program as provided by Prof. S. Grimme9 . During the
calculation some temporary output files are written by ORCA: basename.gcp.in.tmp and basename.gcp.out.tmp will
contain the input for otool gcp and its output.
It has been demonstrated that the popular combination of B3LYP with 6-31G(d) can be strongly improved using
DFT-D3 and gCP [157]. For convenience, the following compound keyword is defined ! B3LYP-gCP-D3/6-31G*. This
equals the keywords: ! B3LYP 6-31G* D3BJ GCP(DF/631GD).
General Advices:
• Small basis sets show not only a large BSSE, but general shortcomings. These effects are not always clearly
distinguishable.
• If computationally affordable, large basis sets (triple-ζ and higher) are always preferable for a given system.
• gCP should always be applied together with a dispersion correction for DFT: gCP-D3 is well tested, but
gCP-NL does also work well. (see sections 6.2.2.10 for DFT-D3 and 6.2.2.11 for DFT-NL)
HF-3c is a fast Hartree-Fock based method developed for computation of structures, vibrational frequencies and
non-covalent interaction energies in huge molecular systems [158]. The starting point for evaluating the electronic
energy is a standard HF calculation with a small Gaussian AO basis set. The used so-called MINIX basis set consists
of different sets of basis functions for different groups of atoms as shown in table 6.6.
HF/M IN IX
Three terms are added to correct the HF energy Etot in order to include London dispersion interactions, to
account for the BSSE and to correct for basis set deficiencies, i.e. overestimated bond lengths. The corrected total
energy is therefore calculated as
D3(BJ)
The first correction term Edisp is the atom-pair wise London dispersion energy from the D3 dispersion correction
gCP
scheme [2] applying Becke-Johnson (BJ) damping [142–144] (see section 6.2.2.10). The second term EBSSE denotes
the geometrical counterpoise (gCP) correction [156] to treat the BSSE (see section 6.2.2.12). For the HF-3c method,
the three usual D3 parameters s8 , a1 and a2 were re-fitted using reference interaction energies of the complexes of the
9
http://www.thch.uni-bonn.de/tc/
6.2 Choice of Computational Model 265
S66 test set [153]. This results in s8 = 0.8777, a1 = 0.4171 and a2 = 2.9149. The parameter s6 was set to unity as
usual to enforce the correct asymptotic limit and the gCP correction was already applied in this fitting step.
The last term ESRB is a short-ranged correction to deal with basis set deficiencies which occur when using small or
minimal basis sets. It corrects for systematically overestimated covalent bond lengths for electronegative elements and
is calculated as a sum over all atom pairs:
Atoms
X Atoms
X
ESRB = −s (ZA ZB )3/2 exp(−γ(RAB
0,D3 3/4
) RAB ) (6.45)
A A6=B
0,D3
Here, RAB are the default cut-off radii as determined ab initio for the D3 scheme [2] and ZA , ZB are the nuclear
charges. This correction is applied for all elements up to argon. The empirical fitting parameters s = 0.03 and
γ = 0.7 were determined to produce vanishing HF-3c total atomic forces for B3LYP-D3(BJ)/def2-TZVPP equilibrium
structures of 107 small organic molecules. More details can be found in the original publication [158].
! HF-3c
! HF-3c is a compound keyword and equals ! HF MINIX D3BJ GCP(HF/MINIX) PATOM, hence no basis set etc has
to be specified. The PATOM guess is selected since the grid construction for the default guess can take more time than
an actual SCF step. The guess can only be overwritten manually in the %method section.
The default mode for the integral handling is set to Conventional. The storing of the two-electron integrals on disk
or in memory if possible leads to large computational savings. In case one want to use the Direct mode, this has to
be specified in the %scf input section:
%scf
SCFmode Direct
end
The output gives the used parameters and the correction itself for D3 and gCP separately. As the SRB correction
is also calculated with the otool gcp, the results are given in the gCP output section. The Total correction to
HF/MINIX is the sum of all three corrections (D3, gCP and SRB) and FINAL SINGLE POINT ENERGY is the total HF-3c
energy as given in equation 6.44.
266 6 Detailed Documentation
-------------------------------------------------------------------------------
DFT DISPERSION CORRECTION
DFT-D V3
parameters
using HF/MINIX parameters
s6 scaling factor : 1.0000
a1 scaling factor : 0.4171
s8 scaling factor : 0.8777
a2 scaling factor : 2.9149
ad hoc parameters k1-k3 : 16.0000 1.3333 -4.0000
------------------------- ----------------
Dispersion correction -0.051255292
------------------------- ----------------
------------------------------------------------------------------------------
------------------------------------------------------------------------------
Method: hf/minix
------------------------- --------------------
FINAL SINGLE POINT ENERGY -163.002895262171
------------------------- --------------------
For the elements Rb to Xe ECPs are automatically used. In case the default initial guess does not work (due to
convergence problems), the guess mode has to be changed to HCORE in the %scf input block. For calculations with
6.2 Choice of Computational Model 267
only lighter elements and therefore no ECPs, the ECP printouts in the output file can be ignored.
A second order Møller-Plesset perturbation theory (MP2) [96, 140, 159–170] module was implemented in ORCA. At
present it can be used to estimate the correlation energy to second order. Analytic gradients or response densities
have been implemented too. The use of the MP2 module is fairly easy.
Or simply
! MP2
or
! RI-MP2
This command does the following (a) it changes the Method to HFGTO and (b) it sets the flag DoMP2 to true. The
program will then first carry out a Hartree-Fock SCF calculation and then estimate the correlation energy by MP2
theory. RHF, UHF and high-spin ROHF reference wavefunctions are permissible and the type of MP2 calculation to
be carried out (for high-spin ROHF the gradients are not available) is automatically chosen based on the value of
HFTyp. If the SCF is carried out conventionally the MP2 calculation will also be done in a conventional scheme unless
the user forces the calculation to be direct. For SCFMode=Direct or SCFMode=SemiDirect the MP2 energy evaluation
will be fully in the integral direct mode.
%mp2
EMin -6.0 # orbital energy cutoff that defines the
# frozen core (in Eh; default=-3.0)
EMax 10.0 # orbital energy cutoff that defines the
# neglected virtual orbitals (in Eh;
# default=1000.0)
EWin EMin,EMax # the same, but accessed as array
#(respects settings in %method block!)
MaxCore 750 # maximum amount of memory (in MB) to be
# used for integral buffering
# (default=50)
ForceDirect false # Force the calculation to be integral
# direct (default=false)
RI off # use the RI approximation (default=off)
Q1Opt # For non-RI calculations a flag how to perform
# the first quarter transformation
# 1 - use double precision buffers (default)
# 2 - use single precision buffers. This reduces
# the memory usage in the bottleneck step by
268 6 Detailed Documentation
In “memory mode” (Q1Opt>0) basically the program treats batches of occupied orbitals at the same time. Thus,
there must be at least enough memory to treat a single occupied MO at each pass. Otherwise the MP2 module will
fail. Thus, potentially, MP2 calculations on large molecules take significant memory and may be most efficiently done
through the RI approximation.
Alternatively, in the “disk based mode” (Q1Opt=-1) the program performs a half transformation of the exchange
integrals and stores the transformed integrals on disk. A bin-sort then leads to the AO operator Kij (µ, ν) = (iµ|jν) in
(11|22) integral notation. These integrals are then used to make the final Kij (a,b) (a,b=virtual MOs) and the EMP2
pair energy contributions. In many cases, and in particular for larger molecules, this algorithm is much more efficient
than the memory based algorithm. It depends, however, much more heavily on the I/O system of the computer that
you use. It is important, that the program uses the flags CFLOAT, UCFLOAT, CDOUBLE or UCDOUBLE in order to store
the unsorted and sorted AO exchange integrals. Which flag is used will influence the performance of the program and
to some extent the accuracy of the result (float based single precision results are usually very slightly less accurate;
microhartree-range deviations from the double precision result10 ). Finally, gradients are presently only available for
the memory based algorithm since in this case a much larger set of integrals is required.
The program can be run with very large benefits in the RI mode [140, 168–170]. Here you must specify a suitable
auxiliary basis set. So far auxiliary basis sets that were developed by Weigend et al. and obtained from the TurboMole
library are implemented [140]:
%basis
Aux SV_C # (=SVP_C,VDZ_C) suitable for split valence
# double-zeta basis sets like SVP
TZV_C # (=TZVP_C,VTZ_C) suitable for split valence
# triple-zeta basis sets like TZVP
TZVPP_C # (=VTZPP_C) suitable for ext. bases
QZV_C # (=QZVP_C) aux basis for QZVP (even larger)
QZVPP_C # aux basis for QZVPP (in ORCA identical with QZVP
10
However, sometimes, and in particular when transition metals and core orbitals are involved we have met unpleasantly
large errors. So – be careful and double check when using floats!
6.2 Choice of Computational Model 269
These auxiliary bases cover a fairly extensive range of orbital expansion bases and they will also be appropriate for
other orbital bases of similar quality. You can always try by using a very large aux-basis like cc aug TZVPP C which
will almost always be appropriate and see if the same result is reproduced with a smaller aux-basis too (of course
within a given tolerance).
The present version of ORCA has inherited the capability of doing semiempirical calculations from the earlier versions.
A number of methods based on the ‘neglect of differential overlap’ [171, 172] are currently implemented for energies
and analytic gradients (for geometry optimization).
%method
Method CNDO
INDO
NDDO
# for Method=CNDO
Version CNDO_1
CNDO_2
CNDO_S
# for Method=INDO
270 6 Detailed Documentation
Version INDO_1
INDO_2
ZINDO_1
ZINDO_2
ZINDO_S
# for Method=NDDO
Version ZNDDO_1
ZNDDO_2
MNDO
AM1
PM3
end
The methods MNDO [173–175], AM1 [176] and PM3 [177] are available for main group elements only and arise from
the work of the Dewar group. They have been optimized to reproduce molecular structure and energetics. The older
CNDO/1,2 and INDO/1,2 were developed by the Pople group [178–186] and were designed to roughly mimic minimal
basis ab initio calculations. The methods of the Zerner group (ZINDO/1,2 and ZINDO/S) are closely related to the
older methods but have been well parameterized for transition metals too [187–197]. ZINDO/1 (and less so ZINDO/2)
are suitable for geometry optimization. ZINDO/S gives good results for electronically excited states at moderate
configuration interaction levels and is also successful for the calculation of electron and spin distributions in large
transition metal complexes [192–197]. The ZNDDO/1,2 methods have been implemented into ORCA as straightforward
extensions of the corresponding INDO methods without changing any parameter. However, the methods benefit from
the somewhat more accurate representation of the Coulomb interaction within the NDDO approximation [198, 199].
The preliminary experience with these methods is that they are better than the corresponding INDO methods for
calculation of transition metal complex structures but on the whole have also similar deficiencies.
The analytic gradients are available for all of these methods and can be used to produce reasonable molecular structures
at low computational cost or to get preliminary insight in the behavior of the system under investigation11 .
There is also a mechanism for simplified input. Instead of giving values for Method and Version separately you can
also assign the value that would normally belong to Method to Version. The program will recognize that and assign
the correct values to both Method and Version.
%method
# shortcut to Method=NDDO; and Version=AM1;
Method AM1
end
• If you want you can also combine semiempirical methods with MP2 (energies only). For example use
Method=AM1; and DoMP2=true; It is questionable if this makes the results of semiempirical calculations any
better but at least it is possible in ORCA.
You can change the built-in semiempirical parameters in a straightforward fashion. For example:
11
However, do not try to use ZINDO/S (or CNDO/S) for structure optimizations - it doesn’t make sense and will
lead to disastrous results because there is no accurate representation of nuclear repulsion in these methods.
6.2 Choice of Computational Model 271
%cis NRoots 20
MaxDim 60
end
%ndoparas P[6,25] 20
P[6,26] 20
end
The %ndoparas block is there in order to let you input your favorite personal parameters. The “molecular” parameters
are set using “INTFA” (‘interaction factors’);
All atomic parameters are collected in an array “P”. The first index is the atomic number of the element whose
parameters you want to change. The second index identifies which parameter. The list of parameters follows below.
Most of them will only be interesting for expert users. The most commonly modified parameters are the Beta’s
(number 25 through 28). Note that most programs require a negative number here. In ORCA the resonance integrals
are defined in a way that makes the Beta’s positive.
F2DD 46
F4DD 47
G1SP 48
G1PD 49
G2SD 50
G3PD 51
R1SPPD 52
R2SDPP 53
R2SDDD 54
# The nuclear repulsion parameters for Dewar type models
NR1 55
NR2 56
NR3 57
NR4 58
NR5 59
NR6 60
NR7 61
NR8 62
NR9 63
NR10 64
NR11 65
NR12 66
NR13 67
# The nuclear attraction/repulsion parameter for MNDO/d
RHO 68
# Spin orbit coupling parameters
SOCP 69 # SOC for the p shell
SOCD 70 # SOC for the d shell
SOCF 71 # SOC for the f shell
A fair number of reasonable basis sets is hardwired in the program as will be described in the next section. In addition
whole basis sets can be read from a file, basis sets can be assigned for all atoms of a given type or, at the highest
resolution, basis sets can be assigned to individual atoms which is convenient if different parts of the molecule are to
be treated at different levels of accuracy. All hard wired basis sets were obtained from the EMSL library [200] and the
input format in ORCA is consistent with the EMSL library format.
The basis set is specified in the block [BASIS]. The format is straightforward.
274 6 Detailed Documentation
%basis
#--------------------------------------------------
# the basic orbital expansion basis
#--------------------------------------------------
Basis MINI # Huzinaga minimal basis [201]
MINIS # Huzinaga minimal basis (valence scaled version) [201]
MIDI # Huzinaga split valence [201]
MINIX # Grimme minimal basis set
STO_NG # STO-NG expansion. Default N=3 [202] [203] [204] [205] [206]
# [207]
_3_21G # Pople style 3-21G basis [208] [209] [210] [211]
_6_31G # Pople style 6-31G basis [212] [213] [214] [215] [216] [217]
_6_311G # Pople style 6-311G basis [218] [219] [220] [221] [222] [216]
_3_21GSP # Buenker’s modification of 3-21G [223] [224]
_4_22GSP # Buenker 4-22G basis [223] [224]
VDZ # Ahlrichs VDZ basis (usually refered to
SV # as SV basis) [225]
VTZ # Ahlrichs VTZ basis [225]
TZV # Ahlrichs TZV basis. Similar but not
# identical to VTZ. Coincides with the
# TurboMole TZV basis set
QZV # TurboMole QZV basis set
DZ # a good quality double-zeta set from
# the TurboMole library
DGauss # DGauss DZVP-DFT basis [226]
cc_VDZ # Dunning cc-VDZ set with no pol. [227] [228] [229] [230]
cc_VTZ # Dunning cc-VTZ set with no pol. [227] [228] [229] [230]
cc_VQZ # Dunning cc-VQZ set with no pol. [227] [228] [229] [230]
cc_V5Z # Dunning cc-V5Z set with no pol. [227] [228] [229] [230]
cc_V6Z # Dunning cc-V6Z set with no pol. [227] [228] [229] [230]
Sadlej_pVTZ# Sadlej’s triple-zeta plus pol.
Sadlej # basis optimized for polariza-
# bility calculations.
# It is of valence-triple-zeta plus 2d
# quality.
Dunning_DZ # Dunnings double-zeta basis
CP # ’core-properties’ basis. More extended
COREPROP # in the core region. At the moment
# only for first row transition metals.
# These are fairly large "polarization consistent"
# basis sets from Frank Jensen that are available for
# H-Ar
PC_1 (PC1)
PC_2 (PC2)
PC_3 (PC3)
6.3 Choice of Basis Set 275
PC_4 (PC4)
Aug_PC_1 (Aug_PC1)
Aug_PC_2 (Aug_PC2)
Aug_PC_3 (Aug_PC3)
Aug_PC_4 (Aug_PC4)
# These basis sets already contain appropriate
# polarization functions. EPRII+IGLO are only
# available for some light main group atoms,
# Wachter’s is only available for the first tran-
# sition row
EPRII # Barone’s basis for hyperfine calcs [231]
EPRIII # Barone’s basis for hyperfine calcs [231]
IGLO_II # Kutzelnigg’s NMR/EPR basis set [232]
IGLO_III # Kutzelnigg’s NMR/EPR basis set [232]
Wachters # Wachter‘s basis (+3f->(2,1)) [233] [234]
# Basis sets for relativistic
# ZORA(IORA) and DKH calculations. See more in the
# chapter on relativistic methods.
SV_ZORA
TZV_ZORA
QZV_ZORA
SV_DKH
TZV_DKH
QZV_DKH
CC_PVTZ_DKH
CC_PVQZ_DKH
CC_PV5Z_DKH
# ANO bases with built-in polarization functions
Bonn_ANO_DZP # double-zeta-ANO contraction (3d->1d)
Bonn_ANO_TZ2P # triple-zeta ANO contraction (3d->2d)
Bonn_ANO_TZ3P # triple-zeta ANO contraction (3d2f->2d1f)
BNANO_DZP # double-zeta-ANO contraction (3d->1d)
BNANO_TZ2P # triple-zeta ANO contraction (3d->2d)
BNANO_TZ3P # triple-zeta ANO contraction (3d2f->2d1f)
NASA_AMES_ANO # the NASA/AMES ANO bases
Bauschlicher_ANO # first row transition metal ANOs
Roos_ANO_DZP # augmented Roos double-zeta ANO. It is
# of the same size as our TZ2P
Roos_ANO_TZP # Very large and expensive ANO set
# Various ANO basis sets
ANO_SZ
ANO_PVDZ
ANO_PVDZ
ANO_PVTZ
ANO_PVQZ
276 6 Detailed Documentation
ANO_PV5Z
ANO_PV6Z
SAUG_ANO_SZ
SAUG_ANO_PVDZ
SAUG_ANO_PVTZ
SAUG_ANO_PVQZ
SAUG_ANO_PV5Z
AUG_ANO_SZ
AUG_ANO_PVDZ
AUG_ANO_PVTZ
AUG_ANO_PVQZ
AUG_ANO_PV5Z
# These are HF limit quality uncontracted bases
# that do not contain polarization functions by
# themselves
Partridge_1 # large (up to Sr) [235] [236]
Partridge_2 # larger (up to Kr) [235] [236]
Partridge_3 # even larger (up to Zn) [235] [236]
# Bases using STOs
STO_DZ
STO_DZP
STO_VDZ
STO_VDZP
STO_SZ
STO_POPLE
ADF_II
ADF_IV
#--------------------------------------------------
# the polarization functions
#--------------------------------------------------
Pol 0 # no polarization functions
_d # = Pople(d) (from 6-311+(d) [218] [219] [220] [221] [222]
# [216])
_dp # = Pople (d,p) (from 6-311+(d) [218] [219] [220] [221] [222]
# [216])
_2d # = Pople (2d) [218] [219] [220] [221] [222] [216]
_2d2p # = Pople (2d,2p) [218] [219] [220] [221] [222] [216]
_2df # = Pople (2df) [218] [219] [220] [221] [222] [216]
_2df2pd # = Pople (2df,2pd) [218] [219] [220] [221] [222] [216]
_3df # = Pople (3df) [218] [219] [220] [221] [222] [216]
_3df3pd # = Pople (3df,3pd) [218] [219] [220] [221] [222] [216]
Ahlrichs_d # Ahlrichs (d) [237]
Ahlrichs_dp # Ahlrichs (d,p) [237]
Ahlrichs_2d # Ahlrichs (2d) [237]
Ahlrichs_2d2p # Ahlrichs (2d,2p) [237]
6.3 Choice of Basis Set 277
CORE_SZ_ADF
CORE_DZ_ADF
#--------------------------------------------------
# STO Valence functions
#--------------------------------------------------
Val VAL_SZ_CLEMENTI
VAL_DZ_CLEMENTI
VAL_SZ_POPLE
VAL_ADF_II
VAL_ADF_IV
#--------------------------------------------------
# A flag to decontracting the basis
#--------------------------------------------------
Decontract false # if chosen "true" the program will
# decontract the basis set
end
WARNING:
• If you use Decontract: if your basis set arises from general contraction it will contain duplicate primitives in
several contractions and these will be removed such that only uniqe primitives remain and there is no problem
with redundancy.
In addition to these basis sets there are a few assignments for Basis that are compounds keys and automatically
assign values to Pol and Diff. Note also that the DGauss basis [226] has polarization functions built in and specifying
additional ‘Pol’ functions will probably lead to disastrous results due to near linear dependence of the basis set.
A note of caution: some of the Pople style polarization exponents were optimized with 6D and 10F functions whereas
ORCA can only use 5D and 7F functions. The Pople style d and dp polarization exponents were taken from the
6-311++G** basis set [216, 218–222]. They have different d-polarization exponents from the 6-31G** basis. This is to
be taken into account when results are compared with other programs. In the case that a more original 6-31G** basis
set is wanted you have to use Basis= 6 31G d or 6 31G dp. This will produce the correct exponents but still ORCA
will use 5D and 7F functions.
The compound keys refer to the Ahlrichs [225] - (that are highly recommended because of their accuracy and efficiency)
and Dunning [227–230] basis set (that are accurate but expensive in ORCA because they are treated as segmented
contractions but have been developed for general contraction).
%basis
# the basic orbital expansion basis
Basis VDZ_P # = Ahlrichs SV(P). No polarization on H
VDZP # = Ahlrichs SVP. Plus polarization on H
# (synonyms are SV_P,SVP and PVDZ)
VDZ2D # with Ahlrichs-(2d)
VDZ2D2P # with Ahlrichs-(2d,2p)
VDZ_PP # with Ahlrichs-pp. No polarization on H
VDZPP # with Ahlrichs-pp. Plus polarization on H
6.3 Choice of Basis Set 279
%basis
# the auxiliary basis suitable for methods without HF
# exchange (normally ’pure’ DFT)
Aux SV_J # (=VDZ_J,SVP_J) RI-J aux basis for SVP basis and
# similar bases. [119] [120]
SV_J_SMALL # (=VDZ_J_SMALL,SVP_J_SMALL,VDZ_J_NOF,SVP_J_NOF,SV_J_NOF)
# smaller RI-J aux basis for SVP basis and similar bases.
TZV_J # (=VTZ_J,TZVP_J) RI-J aux basis for TZVP and higher
6.3 Choice of Basis Set 281
# [119] [120]
TZV_J_SMALL # (=VTZ_J_SMALL,TZVP_J_SMALL,VTZ_J_NOF,TZVP_J_NOF,TZV_J_NOF)
# smaller RI-J aux basis for TZVP basis and similar bases.
TZVPP_J # RI-J aux basis for TZVPP
TZVPP_J_SMALL # smaller RI-J aux basis for TZVPP
DEF2_SV_J # (=DEF2_SVP_J) newer SV aux basis
DEF2_TZV_J # (=DEF2_TZVP_J) newer TZV aux basis
DEF2_TZVPP_J # newer TZVPP aux basis
DEF2_QZVPP_J # newer QZVPP aux basis
# in my experience TZV/J also works in conjunction
# with EPR and IGLO bases.
DGauss_A1_J # (=A1) RI-J basis for DGauss basis [226]
DGauss_A1_X # RI-X basis for DGauss basis [226]
DGauss_A2_J # (=A2) RI-J basis for DGauss basis [226]
DGauss_A2_X # RI-X basis for DGauss basis [226]
DeMon_J # (=DeMon) RI-J basis of the DeMon program [226]
# for correlation calculations (MP2,MR-CI) and also for
# TD-DFT/CIS calculations with Hartree-Fock exchange
Aux SV_C # RI-C basis for SVP and similar
TZV_C # RI-C basis for TZVP and similar
TZVPP_C # RI-C basis for TZVPP and similar
QZVP_C # RI-C basis for QZVP (and QZVPP)
DEF2_SV_C # RI-C basis for SVP and similar
DEF2_TZV_C # RI-C basis for TZVP and similar
DEF2_TZVPP_C # RI-C basis for TZVPP and similar
DEF2_QZVP_C # RI-C basis for QZVP (and QZVPP)
CC_pVDZ_C # RI-C basis for cc-pVDZ and similar
CC_pVTZ_C # RI-C basis for cc-pVTZ and similar
CC_pVQZ_C # RI-C basis for cc-pVQZ and similar
CC_pV5Z_C # RI-C basis for cc-pV5Z and similar
CC_pV6Z_C # RI-C basis for cc-pV6Z and similar
AUG_CC_pVDZ_C # RI-C basis for aug-cc-pVDZ
AUG_CC_pVTZ_C # RI-C basis for aug-cc-pVTZ
AUG_CC_pVQZ_C # RI-C basis for aug-cc-pVQZ
AUG_CC_pV5Z_C # RI-C basis for aug-cc-pV5Z
AUG_CC_pV6Z_C # RI-C basis for aug-cc-pV6Z
AUG_SV_C # RI-C for SVP+diffuse functions
AUG_TZV_C # RI-C for TZVP + diffuse functions
AUG_TZVPP_C # RI-C for TZVPP + diffuse
# Aux bases for Coulomb and exchange fitting
SV_JK # RI-JK basis for SVP and similar
TZV_JK # RI-JK basis for TZVP and similar
TZVPP_JK # RI-JK basis for TZVPP and similar
QZVP_JK # RI-JK basis for QZVP (and QZVPP)
DEF2_SV_JK # RI-JK basis for SVP and similar
282 6 Detailed Documentation
A comment on the DGauss A1 J basis: the DGauss program uses a more accurate fitting scheme and can therefore get
away with a smaller fitting basis than ORCA. Consequently applying the DGauss A1 J auxiliary basis together with
the DGauss DZVP orbital basis will give rise to significant errors. This is not the fault of the DGauss expansion basis
but is most likely a consequence of the less accurate fit used in ORCA. It is recommended to use the SV J aux basis
together with the DGauss basis (and also 6-31G and other split valence double zeta basis sets) because it is larger and
will usually give rise to more accurate results. For example for the molecule [Cu(NH3 )4 ]2+ I obtained an error in the
total energy of 4.3 mEh for the SV J aux basis and DGauss orbital basis and 20.3 mEh with the DGauss A1 expansion
basis compared to the exact result (with the same integration grid). Remarkably in my test calculation the DeMon J
aux basis was as accurate as the SV J aux basis despite the fact that it is smaller. This however is an isolated example
and an extended set of test calculations would be necessary to find out whether this is a general conclusion. Note that
beyond Ne the TZV J expansion basis is the same as SV J but for the first row TZV J is more accurate than SV J.
One thing that is certainly feasible and reasonable if you do not want to depend on the RI approximation is to
converge a RI-J calculation and then take the resulting orbitals as initial guess for a calculation with exact Coulomb
term. This should converge within a few cycles and the total execution time should still be lower than just converging
the calculation directly with exact Coulomb treatment.
%basis
NewGTO 8 # new basis for oxygen
S 3
6.3 Choice of Basis Set 283
1 910.10034975 0.03280967
2 137.19711335 0.23422391
3 30.85279077 0.81490980
L 2
1 1.72885887 0.27389659 0.48155753
2 0.39954770 0.79112437 0.65447861
L 1
1 8.35065975 1.00000000 1.00000000
end
end
Note that for simplicity and consistency the input format is the same as that used in the basis set files. In this
format the first line carries first the angular momentum of the shell to be added (s, p, d, f, g or L) and the number of
primitives. Then for each primitive one line follows which has (a) the index of the primitive (1, 2, 3, . . . ) (b) the
exponent of the primitive and (c) the contraction coefficient (unnormalized). Note that ORCA always uses spherical
harmonic gaussian functions and that L-shells are internally not handled as such but are treated as separate s- and
p-shells. There also is the possibility to include a SCALE X statement after the number of primitives in the first line to
indicate that the basis function exponents should be scaled.
In order to add basis functions to the basis of a given element (for example because you don’t like the standard
polarization functions) use AddGTOs instead or NewGTOs. In NewGTOs or AddGTOs you can also use the nicknames of
internally stored basis sets. An example is:
%basis
NewGTO 8 # new basis for oxygen
"6-31G"
D 1
1 0.4 1.0
end
end
In this example the 6-31G basis is assigned to oxygen and in addition a polarization function with exponent 0.4 is added
to the oxygen basis. The nickname mechanism also understands Pople style assignments like “6-311++G(d,p)”.
A similar mechanism was established for the auxiliary basis sets in RI calculations:
%basis
NewAuxGTO 8 # new auxiliary basis for oxygen
s 1
1 350 1.0
... etc
end
AddAuxGTO 8 # add a shell to the auxiliary basis for
# oxygen
D 1
284 6 Detailed Documentation
1 0.8 1.0
end
end
Sometimes you may want to not treat all carbon atoms with the same basis set but to assign a specific basis set to a
specific atom in the molecules. This is also possible in ORCA and takes place in the section [COORDS]. The format is
the same as described above. An example may help to make things clear:
%coords
CTyp = Internal; # choose internal coordinates
Units = Angs; # choose Angström units
Charge = 0; # total charge
Mult = 1; # spin multiplicity
Coords # start coordinate assignments
C(1) 0 0 0 0.00 0.0 0.00
AddGTO
D 1
1 1.0 1.0
end;
O(2) 1 0 0 1.13 0.0 0.00
NewGTO
"6-311G"
D 1
1 1.2 1.0
end;
end;
end
In this example an extra d-shell with exponent 1.0 is added to the first carbon atom and the basis for the oxygen
atom is changed to 6-311G with an extra d-function of exponent 1.2 added.
Note:
• AUX basis sets can not yet individually specified. This will change in the future.
The previous sections describe the assessment of a desired molecular basis set from appropriately parametrized
functions at various locations within the molecule (normally centered on atoms). The parametrization of these
functions is such that the chance for redundancy is minimal. Since however, one is limited to work with finite
numerical precision, and furthermore these parameters also depend on the molecular geometry, redundancies cannot be
completely eliminated in advance. Redundancy means that the subspace spanned by the given basis functions at given
values of parameters (including geometry), can be identically spanned by a smaller number of linear independent basis
6.3 Choice of Basis Set 285
functions. Linear dependent (redundant) function sets however may cause numerical instabilities. Linear dependence
is normally identified by searching for zero eigenvalues of the overlap matrix. Note that the inverse of the overlap (or
related matrices) are used for orthogonalization purposes, and it follows that if near zero eigenvalues are not treated
properly, the inverse becomes ill-defined, and the SCF procedure numerically unstable.
From the previous discussion, it is evident that the crucial parameter for curing linear dependence is the threshold
below which an overlap eigenvalue is considered zero. This parameter may be changed using the following keyword
%scf
sthresh 1e-7 # default 1e-8
end
Although there is no strict limit for the value of the above parameter, it should reasonably be somewhere between
1e-5 and 1e-8 (the latter is the default). One may get away with 1e-9 or perhaps even lower without convergence
problem, but there is a risk that the result is contaminated with noise caused by the near zero vectors. In difficult
cases, an 1e-7 threshold was often found to work smoothly, and above that one risks throwing away more and more
functions, which also influence comparability of results with other calculations. To monitor the behaviour of the small
eigenvalues, one should look for the following block in the output
Here, the smallest eigenvalue is printed, along with the currently used overlap threshold, and the number of functions
below this (which will be dropped). It is a recommended consistency check to look for an equal number of zero entries
among orbital energies once the SCF procedure converged. Note that for functions belonging to zero eigenvalues no
level shifts are applied!
By using the variables GTOName and GTOAuxName a basis set can be read from an ASCII file12 . The format is that used
for ‘GAMESS’ in the EMSL library [200].
%basis
# read an externally specified orbital basis
GTOName = "MyBasis.bas";
# read an externally specified basis for RI
# calculations
GTOAuxName= "MyAuxBasis.bas";
# for STO basis
STOName= "MySTOBasis.bas"
end
12
In order to not confuse the program it is recommended to assign some value to Basis and Aux and then ‘overrule’
this default with the external basis set. The externally specified basis set then takes priority.
286 6 Detailed Documentation
To give an example of how this format looks like here is a part of the 3-21GSP basis of Buenker and coworkers [223,224]:
In this way you can construct your favorite standard basis set and load it easily into the program. A word of caution:
in C/C++ the backslashes in directory assignments must be given twice to be correctly understood! The file format
for the auxiliary basis sets is exactly the same.
Besides the simple input line (section 3.2.5), assignment of ECPs and associated basis sets can be done within the
%basis block using the NewECP keyword. This provides low-level access to the internal ORCA ECP library, so that
specific combinations of pseudopotentials and valence basis sets that already exist in the program library can be
assigned to specific elements. Moreover, it allows manual specification of new ECPs directly in the input file.
For library ECPs, one of the keywords listed in the second column of table 3.6 (page 26) must be used. If required, a
valence basis set is requested in the same line, using the keywords listed in the fourth column of table 3.6. The utility
program orca ecplib can be used to get a list of all library ECPs and valence basis sets for any element.
In its most simple format, the NewECP keyword is used as in the following example, which is equivalent (for Pt) to the
simple ECP{def2-TZVP} or the more verbose ECP{def2-SD,def2-TZVP} keyword line statements:
%basis
NewECP Pt "SD(60,MWB)" "def2-TZVP" end
end
6.3 Choice of Basis Set 287
Note that the second argument in the above examples (the valence basis set) is actually optional in terms of program
functionality; only the ECP name is compulsory. However, no corresponding valence basis set is assigned automatically
by the program if none is specified. A library valence basis set can be explicitly requested here, or alternatively any
custom basis set can be provided manually with the NewGTO command.
A variant of the NewECP keyword can be used for individual atoms inside the geometry definition:
* xyz ...
...
S 0.0 0.0 0.0 NewECP "LANL(10)" "LANLDZ" end
...
*
To manually specify ECP parameters, the NewECP keyword is followed by the element for which an ECP is to be
entered, the number of core electrons to be replaced (N core) and the maximum angular momentum (lmax). The
ECP specification is finished by giving the definitions of the individual shells that constitute the angular dependent
potentials Ul .
%basis
NewECP element
N_core (number of core electrons)
lmax (max. angular momentum)
[shells]
end
end
For each ECP shell, first the angular momentum l has to be given, followed by the number of primitives. The
primitives themselves are then specified by giving a running index and the respective tuple of exponent akl , expansion
coefficient dkl and radial power nkl .
# ECP shell
l (number of primitives)
1 a1l d1l n1l
2 a2l d2l n3l
...
As an example, consider the SD(10,MDF) for Vanadium. The name indicates a Stuttgart–Dresden type ECP that
replaces 10 core electrons and is derived from a relativistic calculation for the neutral atom. It consists of 4 shells
with angular momentum s, p, d and f . Note that the f shell has an expansion coefficient of 0.0 and thus will not
288 6 Detailed Documentation
contribute at all to this effective core potential. This is typical for all SD potentials (but may be different for program
packages like TURBOMOLE that do not support arbitrary angular momentum with respect to the ECP and therefore
use recontractions of the original parameter sets).
Computations on cluster models sometimes require the presence of embedding potentials in order to account for
otherwise neglected repulsive terms at the border [239]. In order to simplify these kind of calculations with ORCA the
ECP embedding can be accomplished quite easy:
* ...
# atom> charge x y z optional ECP declaration
Zr> 4.0 0.0 0.0 0.0 NewECP "SD(28,MWB)" end
...
*
The declaration of such a coreless ECP centre takes place in the coordinates section by appending a bracket ‘>’ to the
element symbol. Note that embedding ECPs are treated as point charges in ORCA, so the charge has to be given next.
The coordinates of the coreless ECP centre have to be specified as usual and may be followed by an optional ECP
assignment. In general, calculations that employ an ECP embedding procedure should be single point calculations.
However if the need arises to perform a geometry optimization, make sure to set up explicit Cartesian constraints for
the coreless ECP centres.
The initial guess is an important issue in each SCF calculation. If this guess is reasonable the convergence of the
procedure will be much better. ORCA makes some effort to provide a good initial guess and give the user enough
flexibility to tailor the initial guess to his or her needs.
The initial guess is also controlled via the %scf block and the variables Guess, MOInp and GuessMode.
6.4 Choice of Initial Guess and Restart of SCF Calculations 289
Previous versions of ORCA always created a new GBW file at the beginning of the run no matter whether a file of the
same name existed or perhaps contained orbitals. This philosophy was changed in version 2.5-03. The program now
automatically checks if a .gbw file of the same name exists. If yes, the program checks if it contains orbitals and all
other necessary information for a restart. If yes, the variable Guess is set to MORead. The existing .gbw file is renamed
to BaseName.ges and MOInp is set to this filename. If the AutoStart feature is not desired set AutoStart false in
the %scf block or give the keyword !NoAutoStart in the simple input line.
The simplest guess is to diagonalize the one electron matrix to obtain starting orbitals. This guess is very simple but
usually also a disaster because it produces orbitals that are far too compact.
The remaining guesses (may) need the projection of initial guess orbitals onto the actual basis set. In ORCA there
are two ways this can be done. GuessMode FMatrix and GuessMode CMatrix The results from the two methods are
usually rather similar. In certain cases GuessMode Cmatrix may be preferable. GuessMode FMatrix is simpler and
faster. In short the FMatrix projection defines an effective one electron operator:
X
f= εi a+
i ai (6.46)
i
where the sum is over all orbitals of the initial guess orbital set, a+
i is the creation operator for an electron in guess
MO i, ai is the corresponding destruction operator and εi is the orbital energy. This effective one electron operator
is diagonalized in the actual basis and the eigenvectors are the initial guess orbitals in the target basis. For most
wavefunctions this produces a fairly reasonable guess.
CMatrix is more involved. It uses the theory of corresponding orbitals to fit each MO subspace (occupied, partially
occupied or spin up and spin down occupied) separately [240, 241]. After fitting the occupied orbitals the virtual
290 6 Detailed Documentation
starting orbitals are chosen in the orthogonal complement of the occupied orbitals. In some cases, especially when
restarting ROHF calculations this may be an advantage. Otherwise I haven’t met cases where CMatrix was grossly
superior to FMatrix but that doesn’t mean that such cases may exist and they may not even be exotic.
The PModel guess (chosen by Guess PModel in the %scf block or simply a keywordline with !PModel) is one that is
usually considerably successful. It consists of building and diagonalizing a Kohn-Sham matrix with an electron density
which consists of the superposition of spherical neutral atoms densities which are predetermined for both relativistic
and nonrelativistic methods. This guess is valid for both Hartree-Fock and DFT methods but not for semiempirical
models. However, due to the complexity of the guess it will also take a little computer time (usually less than one
SCF iteration). The model densities are available for most atoms of the periodic table and consequently the PModel
guess is usually the method of choice (particularly for molecules containing heavy elements) unless you have more
accurate starting orbitals available.
The extended Hückel guess proceeds by performing a minimal basis extended Hückel calculation and projecting the
MOs from this calculation onto the actual basis set using one of the two methods described above. The minimal basis
is the STO-3G basis set. The Hückel guess may not be very good because the STO-3G basis set is so poor. There
is also accumulating evidence that the superposition of atomic densities produces a fairly good initial guess. The
critique of the atomic density method is that the actual shape of the molecule is not taken into account and it is
more difficult to reliably define singly occupied orbitals for ROHF calculations or a reasonable spin density for UHF
calculations. Therefore ORCA chooses a different way in the PAtom guess (which is the default guess) - the Hückel
calculation is simply carried out for all electrons in a minimal basis of atomic SCF orbitals. These were determined
once and for all and are stored inside the program. This means that the densities around the atoms are very close to
the atomic ones, all orbitals on one center are exactly orthogonal, the initial electron distribution already reflects the
molecular shape and there are well defined singly occupied orbitals for ROHF calculations. This guess has to the best
of my knowledge not been described before.
To restart SCF calculations, it can be very helpful and time-saving to read in the orbital information of a previous
calculation. To do this, specify:
! moread
% moinp "name.gbw"
The program has an inconvenience here — the input .gbw file from the earlier calculation must have a different name
than the new calculation, because in the very beginning of a calculation, a new .gbw file is written. If the names are
the same, the .gbw file from the earlier calculation is overwritten and all information is lost. Therefore, if you want to
restart a calculation with an input file of the same name as the previous calculation, you have to rename the .gbw file
first.
The program stores the current orbitals in every SCF cycle. Should a job crash, it can be restarted from the orbitals
that were present at this time by renaming the .gbw file and using it as input. In addition, an effort has been made to
6.4 Choice of Initial Guess and Restart of SCF Calculations 291
make .gbw files from different releases compatible with each other. If your input .gbw file is from an older release, use
! rescue moread noiter with % moinp "name.gbw" to produce an up-to-date .gbw. When the rescue keyword is
invoked, only the orbital coefficients are read from the .gbw file, and everything else from the input file. Thus, make
sure that the geometry and the basis set of the old .gbw file and the new input match.
Within the same ORCA version, neither the geometry nor the basis set stored in name.gbw need to match the present
geometry or basis set. The program merely checks if the molecules found in the current calculation and name.gbw are
consistent with each other and then performs one of the possible orbital projections. If the two basis sets are identical
the program by default only reorthogonalizes and renormalizes the input orbitals. However, this can be overruled by
explicitly specifying GuessMode in the % scf block as CMatrix or FMatrix.
There is an additional aspect of restarting SCF calculations — if you have chosen SCFMode = Conventional or SCFMode
= SemiDirect the program stores a large number of integrals that might have been time consuming to calculate on
disk. Normally the program deletes these integrals at the end of the calculation. However, if you want to do a closely
related calculation that requires the same integrals (i.e. the geometry, the basis set and the threshold Thresh are
the same) it is faster to use the integrals generated previously. This is done by using KeepInts = true in the % scf
block of the first calculation and then use ReadInts = true in the the % scf block of the second calculation. If the
second calculation has a different name than the first calculation you have to use IntName = "FirstName" to tell the
program the name of the integral files. Note that the file containing the integrals does not have an extension — it is
simply the name of the previous input file with .inp stripped off.
Note that if you want to reuse the integrals for SemiDirect calculations it is forbidden to change the values of TCost
and TSize in the % scf block. The program will not check for that but your results will be totally meaningless. In
general, restarting calculations with old integral files requires the awareness and responsibility of the user. If properly
used, this feature can save considerable amounts of time.
6.4.7 Changing the Order of Initial Guess MOs and Breaking the Initial Guess
Symmetry
Occasionally you will want to change the order of initial guess MOs — be it because the initial guess yielded an
erroneous occupation pattern or because you want to converge to a different electronic state using the orbitals of a
previous calculation. Reordering of MOs and other tasks (like breaking the symmetry of the electronic wavefunction)
are conveniently handled with the Rotate feature in ORCA. Rotate is a subblock of the SCF block that allows you to
linearly transform pairs of MOs.
%scf
Rotate
{ MO1, MO2, Angle }
{ MO1, MO2, Angle, Operator1, Operator2 }
end
end
292 6 Detailed Documentation
Here, MO1 and MO2 are the indices of the two MOs of interest. Recall that ORCA starts counting MOs with index 0, i.e.
the MO with index 1 is the second MO. Angle is the rotation angle in degrees. A rotation angle of 90◦ corresponds to
flipping two MOs, an angle of 45◦ leads to a 50:50 mixture of two MOs, and a 180◦ rotation leads to a change of
phase. Operator1 and Operator2 are the orbitals sets for the rotation. For UHF calculations spin-up orbitals belong
to operator 0 and spin-down orbitals to operator 1. RHF and ROHF calculations only have a single orbital set.
The Rotate feature can be used to produce broken symmetry solutions say in transition metal dimers. In order to
do that first perform a high spin calculation, then find the pairs of MOs that are symmetric and antisymmetric
combinations of each other. Take these MOs as the initial guess and use rotations of 45◦ for each pair to localize the
startup MOs. If you are lucky and the broken symmetry solution exists, you have a good chance of finding it this way.
The physical meaning of such a solution is a different question that will not be touched here.
SCF convergence is a pressing problem in any electronic structure package because the total execution times increases
linearly with the number of iterations. Thus, it remains true that the best way to enhance the performance of an SCF
program is to make it converge better. In some cases, especially for open shell transition metal complexes, convergence
may be very difficult. ORCA makes a dedicated effort to achieve reasonable SCF convergence for these cases without
compromising efficiency. However, there are cases that do not converge, but find a list of things to try first before
giving up in this chapter.
Before discussing how to converge a SCF calculation it should be defined what is meant by ‘converged’. ORCA has
a variety of options to control the target precision of the energy and the wavefunction that can be selected in the
% scf block, or with a simple input line keyword that merges the criterion label with “SCF”, e.g. ! StrongSCF or
! VeryTightSCF:
%scf
Convergence # The default convergence is between medium and strong
Sloppy # very weak convergence
Loose # still weak convergence
Medium # intermediate accuracy
Strong # stronger
Tight # still stronger
VeryTight # even stronger
Extreme # close to numerical zero of the computer
# in double precision arithmetic
end
Like other keys, Convergence is a compound key that assigns default values to a variety of other variables given in the
box below. The default convergence criteria are reasonable and should be sufficient for most purposes. For a cursory
look at populations weaker convergence may be sufficient, whereas other cases may require stronger than default
convergence. Note that Convergence does not only affect the target convergence tolerances but also the integral
accuracy as discussed in the section about direct SCF and alike. This is very important: if the error in the integrals is
larger than the convergence criterion, a direct SCF calculation cannot possibly converge.
6.5 SCF Convergence 293
The convergence criteria are always printed in the output. Given below is a list of the convergence criteria for
! TightSCF, which is often used for calculations on transition metal complexes.
%scf
TolE 1e-8 # energy change between two cycles
TolRMSP 5e-9 # RMS density change
TolMaxP 1e-7 # maximum density change
TolErr 5e-7 # DIIS error convergence
TolG 1e-5 # orbital gradient convergence
TolX 1e-5 # orbital rotation angle convergence
ConvCheckMode 2 # = 0: check all convergence criteria
# = 1: stop if one of criterion is met, this is sloppy!
# = 2: check change in total energy and in one-electron energy
# Converged if delta(Etot)<TolE and delta(E1)<1e3*TolE
end
If ConvCheckMode=0, all convergence criteria have to be satisfied for the program to accept the calculation as converged,
which is a quite rigorous criterion. In this mode, the program also has mechanisms to decide that a calculation is
converged even if one convergence criterion is not fulfilled but the others are overachieved. ConvCheckMode=1 means
that one criterion is enough. This is quite dangerous, so ensure that none of the criteria are too weak, otherwise the
result will be unreliable. The default ConvCheckMode=2 is a check of medium rigour — the program checks for the
change in total energy and for the change in the one-electron energy. If the ratio of total energy and one-electron
energy is constant, the self-consistent field does not fluctuate anymore and the calculation can be considered converged.
If you have small eigenvalues of the overlap matrix, the density may not be converged to the number of significant
figures requested by TolMaxP and TolRMSP.
Damping is the oldest and simplest convergence aid. It was already invented by Douglas Hartree when he did his
famous atomic calculations. Damping consists of mixing the old density with the new density as:
where α is the damping factor, which must have a value of less than 1. Thus the permissible range (not checked by
the program) is 0 . . . 0.999999. For α values larger than 1, the calculation cannot proceed since no new density is
admixedfall. Damping is important in the early stages of a calculation where Pold and Pnew are very different from
each other and the energy is strongly fluctuating. Many schemes have been suggested that vary the damping factor
dynamically to give strong damping in the beginning and no damping in the end of an SCF. The scheme implemented
in ORCA is that by Hehenberger and Zerner [242] and is invoked with CNVZerner=true. Static damping is invoked
with CNVDamp=true. These convergers are mutually exclusive. They can be used in the beginning of a calculation
when it is not within the convergence radius of DIIS or SOSCF. Damping works reasonably well, but most other
convergers in ORCA are more powerful.
If damping used in conjunction with DIIS or SOSCF, the value of DampErr is important: once the DIIS error falls
below DampErr, the damping is turned off. In case SOSCF is used, DampErr refers to the orbital gradient value at
which the damping is turned off. The default value is 0.1 Eh. In difficult cases, however, it is a good idea to choose
294 6 Detailed Documentation
DampErr much smaller, e.g. 0.001. This is — to some extent — chosen automatically together with the keyword
! SlowConv.
%scf
# control of the Damping procedure
CNVDamp true # default: true
CNVZerner false # default: false
DampFac 0.98 # default: 0.7
DampErr 0.05 # default: 0.1
DampMin 0.1 # default: 0.0
DampMax 0.99 # default: 0.98
# more convenient:
Damp fac 0.98 ErrOff 0.05 Min 0.1 Max 0.99 end
end
Level shifting is a frequently used technique. The basic idea is to shift the energies of the virtual orbitals such that
after diagonalization the occupied and virtual orbitals mix less strongly and the calculation converges more smoothly
towards the desired state. Also, level shifting should prevent flipping of electronic states in near-degenerate cases. In
a special context it has been shown by Saunders and Hillier [243, 244] to be equivalent to damping.
Similar to DampErr described in the previous section, ShiftErr refers to the DIIS error at which the level shifting is
turned off.
%scf
# control of the level shift procedure
CNVShift true # default: true
LShift 0.1 # default: 0.25, energy unit is Eh.
ShiftErr 0.1 # default: 0.0
# more convenient:
Shift Shift 0.1 ErrOff 0.1 end
end
The Direct Inversion in Iterative Subspace (DIIS) is a technique that was invented by Pulay [245, 246]. It has become
the de facto standard in most modern electronic structure programs, because DIIS is robust, efficient and easy
to implement. Basically DIIS uses a criterion to judge how far a given trial density is from self consistency. The
commutator of the Fock and density matrices [F,P] is a convenient measure for this error. With this information,
an extrapolated Fock matrix from the present and previous Fock matrices is constructed, which should be much
closer to self consistency. In practice this is usually true, and better than linear convergence has been observed with
DIIS. In some rare (open shell) cases however, DIIS convergence is slow or absent after some initial progress. As self
consistency is approached, the set of linear equations to be solved for DIIS approaches linear dependency and it is
useful to bias DIIS in favor of the SCF cycle that had the lowest energy using the factor DIISBfac. This is achieved
6.5 SCF Convergence 295
by multiplying all diagonal elements of the DIIS matrix with this factor unless it is the Fock matrix/density which
leads to the lowest energy. The default value for DIISBfac is 1.05.
The value of DIISMaxEq is the maximum number of old Fock matrices to remember. Values of 5-7 have been
recommended, while other users store 10-15 Fock matrices. Should the standard DIIS not achieve convergence, some
experimentation with this parameter can be worthwhile. In cases where DIIS causes problems in the beginning of
the SCF, it may have to be invoked at a later stage. The start of the DIIS procedure is controlled by DIISStart.
It has a default value of 0.2 Eh, which usually starts DIIS after 0-3 cycles. A different way of controlling the DIIS
start is adjusting the value DIISMaxIt, which sets the maximum number of cycles after which DIIS will be started
irrespective of the error value.
%scf
# control of the DIIS procedure
CNVDIIS true # default: true
DIISStart 0.1 # default: 0.2
DIISMaxIt 5 # default: 12
DIISMaxEq 7 # default: 5
DIISBFac 1.2 # default: 1.05
DIISMaxC 15.0 # default: 10.0
# more convenient:
DIIS Start 0.1 MaxIt 5 MaxEq 7 BFac 1.2 MaxC 15.0 end
end
An alternative algorithm that makes use of the DIIS concept is called KDIIS in ORCA. The KDIIS algorithm is
designed to bring the orbital gradient of any energy expression to zero using a combination of DIIS extrapolation and
first order perturbation theory. Thus, the method is diagonalization-free. In our hands it is superior to the standard
DIIS algorithm in many cases, but not always. The algorithm is invoked with the keyword ! KDIIS and is available
for RHF, UHF and CASSCF.
SOSCF is an approximately quadratically convergent variant of the SCF procedure [247, 248].The theory is relatively
involved and will not be described here. In short – SOSCF computes an initial guess to the inverse orbital hessian
and then uses the BFGS formula in a recursive way to update orbital rotation angles. As information from a few
iterations accumulates, the guess to the inverse orbital hessian becomes better and better and the calculation reaches
a regime where it converges superlinearly. As implemented, the procedure converges as well or slightly better than
DIIS and takes a somewhat less time. However, it is also a lot less robust, so that DIIS is the method of choice for
many problems (see also the description of the full Newton-Raphson procedure in the next section). On the other
hand, SOSCF is useful when DIIS gets stuck at some error around ∼ 0.001 or 0.0001. Such cases were the primary
motive for the implementation of SOSCF into ORCA.
The drawback of SOSCF is the following: in the beginning of the SCF, the orbital gradient (the derivative of the total
energy with respect to rotations that describe the mixing of occupied and virtual MOs) is large, so that one is far
from the quadratic regime. In such cases, the procedure is not successful and may even wildly diverge. Therefore it is
recommended to only invoke the SOSCF procedure in the very end of the SCF where DIIS may lead to “trailing”
296 6 Detailed Documentation
convergence. SOSCF is controlled by the variables SOSCFStart and SOSCFMaxIt. SOSCFStart is a threshold for the
orbital gradient. When the orbital gradient, or equivalently the DIIS Error, fall below SOSCFStart, the SOSCF
procedure is initiated. SOSCFMaxIt is the latest iteration to start the SOSCF even if the orbital gradient is still above
SOSCFStart.
%scf
# control of the SOSCF procedure
CNVSOSCF true # default: false
SOSCFStart 0.1 # default: 0.01
SOSCFMaxIt 5 # default: 1000
# more convenient:
SOSCFStart 0.1 MaxIt 5 end
end
For many calculations on transition metal complexes, it is a good idea to be conservative in the startup criterion for
SOSCF, it may diverge otherwise. A choice of 0.01 or lower can be recommended.
The Newton–Raphson (NR) procedure is quite powerful once the calculations is within its radius of convergence: it
then usually converges extremely fast and to high accuracy. It should be considered that the time requirement for
a NR iteration is much higher than that for a regular SCF calculation. However, this may be overcompensated by
the reduced number of cycles (see section 5.1.5 for a numerical example). For a “normal” well-behaved molecule
which converges in 10–15 iterations with the DIIS procedure, it is unlikely that invoking the NR converger pays off.
For more problematic cases it is more likely that it will. Another area where NR-SCF may be useful is when you
desire accurate SCF solutions, for example for numerical frequency calculations. In these cases, a different option is to
decrease the convergence tolerance of the CP-SCF solver (Z Tol).
In version 2.4.45 the full Newton–Raphson method (and its augmented Hessian analogue) was implemented for
converging closed-shell or spin-unrestricted Hartree–Fock and density functional calculations.
The NR solver itself has two options, which are very similar to the analogous SOSCF options:
%scf
# no Newton-Raphson by default
NR MaxIt 10 # iteration at which NR is switched on, default 1000
Start 0.05 # DIIS error at which NR is switched on, default 0.02
end
end
As soon as the Newton–Raphson procedure starts within one SCF procedure, all other convergers are switched off.
After convergence is achieved, the orbitals are canonicalized again through a single diagonalization of the Fock operator.
In order to help the convergence of the CP-SCF procedure, the orbitals are quasi-canonical in between iterations. This
means that after the orbital update, the occ–occ and virt–virt blocks of the Fock operator are diagonalized separately
and the occupied and virtual orbitals are chosen to be eigenfunctions of these parts of the Fock operator.
6.5 SCF Convergence 297
There is a shortcut to the NR-converger. If ! NRSCF is chosen, this will invoke the NRSCF once the DIIS error falls
below 0.02 (the default value). If SlowConv is also specified, the NR converger will only be switched on at a DIIS
error of 0.002. This is more conservative since the NR-solver may also have convergence problems otherwise.
In particularly difficult cases, the Newton–Raphson step may run into trouble if the orbital Hessian is singular or
nearly singular. It is then preferable to take a more cautious step, by invoking the augmented-Hessian method which
was implemented for such cases. This method is called by ! AHSCF. It sets the same values as NRSCF but puts an
augmented Hessian solver into operation. It will not always help, but in some difficult situations this feature has
already been successful.
Technically speaking, the program solves a large set of linear equations in each NR iteration. It turns out that the
equations to be solved are precisely equivalent to the CP-SCF equations for an electric-field-like equation but with
the right hand side being replaced by the occupied/virtual blocks of the Fock operator in the MO basis. Thus, the
implementation calls the CP-SCF program in each SCF iteration. The converged CP-SCF first order wavefunction
coefficients are then used to update the current orbitals. Thus, the cost of each NR iteration can be precisely specified
as the cost of one electric field type CP-SCF calculation for a single perturbation on the same system.
One important aspect of the NR implementation is that the NR solver checks itself for convergence. The orbital
gradient is calculated before the CP-SCF program is called. If the orbital gradient is below its threshold (TolG),
convergence is signaled irrespective of what the other convergence indicators are. The orbital gradient is a rigorous
criterion and therefore the results are considered reliable. If tighter convergence is desired, the thresholds TolG and
TolX should be lowered.
The following example for a “normal” case of a Hartree–Fock geometry optimization converges in 5 cycles:
* xyz 0 1
N 0 0 0
N 0 0 1
*
With the alternative first order SCF it also takes 5 cycles, but in each geometry optimization step there are more SCF
iterations. In these examples, the total time for the calculations is comparable (less than 30 seconds), but that may
be different for other cases.
* xyz 0 1
N 0 0 0
N 0 0 1
*
The CP-SCF program is called with the convergence and method flags that are also used in Z-vector calculations (e.g.
in MP2 or CIS/TD-DFT gradient calculations). They are accessible through the %method block:
298 6 Detailed Documentation
The range of applicability of the NR method is precisely the same as that of the CP-SCF program itself and the SCF
program will immediately benefit from any improvement made in the CP-SCF module.
Only a very basic implementation of fractional occupation numbers is presently provided. It is meant to deal with
orbitally degenerate states in the UHF/UKS method. Mainly it was implemented to avoid symmetry breaking in
DFT calculations on orbitally degenerate molecules and atoms. The program checks the orbital energies of the initial
guess orbitals, finds degenerate sets and averages the occupation numbers among them. Currently the criterion for
degenerate orbitals is 10−3 Eh. The fractional occupation number option is invoked by:
Clearly, the power of fractional occupation numbers goes far beyond what is presently implemented in the program
and future releases will likely make more use of them. The program prints a warning whenever it uses fractional
occupation numbers. The fractionally occupied orbitals should be checked to ensure they are actually the intended
ones.
NOTE:
• Fractional occupation numbers cannot be used together with the CNVRico or SOSCF methods.
• Using GuessMode = CMatrix will cause problems because there are no orbital energies for the initial guess
orbitals. The program will then average over all orbitals — which makes no sense at all.
A finite temperature can be used to apply a Fermi-like occupation number smearing over the orbitals of the system,
which may sometimes help to get convergence of the SCF equations in near hopeless cases. Through the smearing, the
electrons are distributed according to Fermi statistics among the available orbitals. The “chemical potential” is found
through the condition that the total number of electrons remains correct. Gradients can be computed in the presence
of occupation number smearing.
The basic variable that controls the type of wavefunction to be computed is the variable HFTyp in the %scf block. If
nothing is specified for HFTyp, the program will check the multiplicity given in the input: for closed shell molecules
with multiplicity 1, RHF/RKS is assumed; for open shell molecules with multiplicity larger than 1, UHF/UKS is
invoked. RHF will lead to a spin restricted closed shell type computation [96]. For DFT calculations, RKS, UKS and
ROKS can be used as synonyms for RHF, UHF and ROHF. The restricted open shell DFT method (ROKS) is only operative
for high-spin states that have n unpaired electrons and S = n/2. UKS wavefunctions will not be spin-purified.
In certain cases you may want to run open shell molecules with RHF/RKS to get a ‘half-electron’ type wavefunction [249].
The total energy is not corrected! Sometimes these half-electron computations lead to acceptable convergence, and
the resulting orbitals may be used as input for ROHF, UHF or MRCI calculations. Especially for transition metal
complexes the orbitals are quite different from ROHF or UHF orbitals, so that it is not recommended to over-interpret
the wavefunctions from such calculations. The calculation is set up in the following way:
For ROHF calculations [250–258] the program will try to figure out what type of open shell situation is present on
the basis of the initial guess orbitals and their energies. Most ‘simple’ cases are well recognized but sometimes a
little help from the user is needed. The ROHF code has a very powerful feature that goes back to insights of Mike
Zerner [259, 260]. It can average over either all states of a given configuration (CAHF) or all states of a given spin for
a given configuration (SAHF). Especially the SAHF feature gives you easy access to most degenerate high symmetry
situations and the orbitals resulting from such calculations will be very convenient as input for CI calculations. In this
way one can approach results from MCSCF calculations.
The input variables described above are accessed in the %scf block. ROHFOPT Case User is a convenient way to input
details. For example for the high spin case with three electrons in three orbitals gives two operators with vector
coupling coefficients a = 1 and b = 2 (Zerner convention).
end
ROHFOP Case User # manual input of ROHF variables
Nop 2 # number of operators
Norb[1] 3 # number of open shell orbitals
Nel[1] 3 # number of open shell electrons
A[1,1] 1 # Coulomb vector in the open shell
B[1,1] 2 # Exchange vector in the open shell
end
end
The hypothetical example below could represent an excited state of an octahedral d3 transition metal complex. In
this case there are five open shell orbitals. The first three open shell orbitals contain two electrons and the last two
one electron. The input for a SAHF calculation is identical, just replace CAHF with SAHF.
For a ROHF case HighSpin calculation an analogous input can be used, but the number of operators is always two
(one closed and one open shell), therefore:
One awkward feature of the ROHF theory is that the Fock operator is somewhat arbitrarily defined. Different choices
lead to the same wavefunction, but have different convergence properties that may vary from system to system.
ORCA thus lets the user choose the desired variant. Playing around with these choices may turn a divergent or slowly
converging ROHF calculation into a successful calculation!
The ROHF Restrict feature is another feature that may be useful. If you suspect that the ROHF calculation does
not converge because an open shell and a closed shell orbital are flipping back and forth, you can try to avoid this
behavior by choosing ROHF Restrict= true. Of course there is no guarantee that it will work, and no guarantee that
the system stays in the desired state. However, it decreases the chances of large, uncontrolled steps.
The program can produce the UHF natural orbitals (UNOs). With these, the open shell wavefunction can be pictured
conveniently. The syntax is simple:
There are various printing options for UNOs described in the output section 6.22. The UNOs can also be plotted as
described in the plots section 6.23. In general the program stores a file BaseName.uno, where BaseName is by default
the name of you input file with .inp stripped off. Accordingly, the gbw file is named BaseName.gbw. The .uno file is
a normal gbw file that contains the geometry, basis set and the UNO orbitals. It could be used, for example, to start
a ROHF calculation.
As the number of nonzero integrals grows very rapidly and reaches easily hundreds of millions even with medium
sized basis sets in medium sized molecules, storage of all integrals is not generally feasible. This desperate situation
prevented SCF calculations on larger molecules for quite some time, so that Almlöf [261–263] made the insightful
suggestion to repeat the integral calculation, which was already the dominant step, in every SCF cycle to solve the
storage problem. Naively, one would think that this raises the effort for the calculation to Pnew (where niter is the
number of iterations and tintegrals is the time needed to generate the nonzero integrals). However, this is not the case
because only the change in the Fock matrix is required from one iteration to the next, but not the Fock matrix itself.
As the calculations starts to converge, more and more integrals can be skipped. The integral calculation time will
still dominate the calculation quite strongly, so that ways to reduce this burden are clearly called for. An important
contribution to this subject was made by Häser and Ahlrichs [264] who suggested to store some of the integrals and to
only recalculate the remaining ones in the direct SCF calculation. Obvious candidates for storage are those integrals
that are expensive to calculate. As integrals are calculated in batches 13 the cost of evaluating the given batch of shells
p, q, r, s may be estimated as:
13
A batch is a set of integrals that arises from all components of the shells involved in the integral. For example a
hpp|ppi batch gives rise to 3 × 3 × 3 × 3 = 81 integrals due to all possible combinations of px , py and pz functions
in the four shells. Computations based on batches lead to great computational advantages because the 81 integrals
involved in the hpp|ppi batch share many common intermediate quantities.
302 6 Detailed Documentation
Here, np is the number of primitives involved in shell p, and lp is the angular momentum for this shell. Large integrals
are also good candidates for storage, because small changes in the density that multiply large integrals are likely to
give a nonzero contribution to the changes in the Fock matrix.
ORCA thus features three possibilities for integral handling, which are controlled by the variable SCFMode. In the
mode Conventional, all integrals above a given threshold are stored on disk (in a compressed format that saves much
disk space). In the mode Direct, all two-electron integrals are recomputed in each iteration. In the mode SemiDirect,
the Häser/Ahlrichs-type hybrid method as described above is implemented.
Two further variables are of importance: In the Conventional and SemiDirect modes the program may write enormous
amounts of data to disk. To ensure this stays within bounds, the program first performs a so-called ‘statistics run’
that gives a pessimistic estimate of how large the integral files will be. Oftentimes, the program will overestimate the
amount of disk space required by a factor of two or more. The maximum amount of disk space that is allowed for the
integral files is given by MaxDisk (in Megabytes).
On the other hand, if the integral files in Conventional and SemiDirect runs are small enough to fit into the central
memory, it is faster to do this since it avoids I/O bottlenecks. The maximum amount of memory allocated for integrals
in this way is specified by MaxIntMem (in Megabytes). If the integral files are larger than MaxIntMem, no integrals will
be read into memory.
%scf
MaxIter 100 # Max. no. of SCF iterations
SCFMode Direct # default, other choices: Conventional, SemiDirect
Thresh 1e-8 # Threshold for neglecting integrals / Fock matrix contributions
# Depends on the chosen convergence tolerance (in Eh).
TCut 1e-10 # Threshold for neglecting primitive batches. If the prefactor
# in the integral is smaller than TCut, the contribution of the
# primitive batch to the total batch is neglected.
TCost 100 # Threshold for considering integrals as costly in
# SemiDirect SCF. Batches with Cost > TCost are stored.
TSize 0.01 # In SemiDirect SCF: stores integrals with estim. size = TSize
UseCheapInts false # default: false
DirectResetFreq 20 # default: 15
MaxDisk 2500 # Max. amount of disk for 2 el. ints. (MB)
MaxIntMem 400 # Max. amount of RAM for 2 el. ints. (MB)
end
The flag UseCheapInts has the following meaning: In a Direct or SemiDirect SCF calculation, the oscillations in
the total energy and density are initially quite large. High accuracy in the integrals is therefore not crucial. If
UseCheapInts is switched on, the program loosens the threshold for the integrals and thus saves a lot of computational
time. After having obtained a reasonable initial convergence, the thresholds are tightened to the target accuracy.
One pitfall with this method is that the number of cycles required to reach convergence may be larger relative to a
calculation with full integral accuracy throughout.14 When restarting calculations that are close to convergence, it is
recommended to switch UseCheapInts off. UseCheapInts has no meaning in a conventional SCF.
14
This might be an undesirable feature of the current implementation.
6.6 Choice of Wavefunction and Integral Handling 303
The value of DirectResetFreq sets the number of incremental Fock matrix builds after which the program should
perform a full Fock matrix build in a Direct or SemiDirect SCF calculation. To prevent numerical instabilities that
arise from accumulated errors in the recursively build Fock matrix, the value should not be too large, since this will
adversely affect the SCF convergence. If the value is too small, the program will update more frequently, but the
calculation will take considerably longer, since a full Fock matrix build is more expensive than a recursive one.
The thresholds TCut and Thresh also deserve a closer explanation. Thresh is a threshold that determines when to
neglect two-electron integrals. If a given integral is smaller than Thresh Eh, it will not be stored or used in Fock
matrix construction. Additionally, contributions to the Fock matrix that are smaller than Thresh Eh will not be
calculated in a Direct or SemiDirect SCF.
Clearly, it would be wasteful to calculate an integral, then find out it is good for nothing and thus discard it. A
useful feature would be an efficient way to estimate the size of the integral before it is even calculated, or even have
an estimate that is a rigorous upper bound on the value of the integral. Häser and Ahlrichs [264] were the first to
recognize that such an upper bound is actually rather easy to calculate. They showed that:
p p
|hij |kl i| 6 hij |ij i hkl |kl i (6.49)
where:
Z Z
−1
hij |kl i = φi (~r1 ) φj (~r1 ) r12 φk (~r2 ) φl (~r2 ) d~r1 d~r2 (6.50)
Thus, in order to compute an upper bound for the integral only the right hand side of this equation must be known.
This involves only two index quantities, namely the matrix of two center exchange integrals hij |ij i. These integrals
are easy and quick to calculate and they are all >0 so that there is no trouble with the square root. Thus, one has a
powerful device to avoid computation of small integrals. In an actual calculation, the Schwartz prescreening is not
used on the level of individual basis functions but on the level of shell batches because integrals are always calculated
in batches. To realize this, the largest exchange integral of a given exchange integral block is looked for and its square
root is stored in the so called pre-screening matrix K (that is stored on disk in ORCA). In a direct or semidirect
SCF this matrix is not recalculated in every cycle, but simply read from disk whenever it is needed. The matrix
of exchange integrals on the level of individual basis function is used in conventional or semidirect calculations to
estimate the disk requirements (the ‘statistics’ run).
Once it has been determined that a given integral batch survives it may be calculated as:
X X X X
hij |kl i = dpi dqj dkr dsl hip jq |kr ls i (6.51)
p q r s
where the sums p, q, r, s run over the primitive gaussians in each basis function i, j, k, l and the d’s are the contraction
coefficients. There are more powerful algorithms than this one and they are also used in ORCA. However, if many
terms in the sum can be skipped and the total angular momentum is low, it is still worthwhile to compute contracted
integrals in this straightforward way. In equation 6.51, each primitive integral batch hip jq |kr ls i contains a prefactor
Ipqrs that depends on the position of the four gaussians and their orbital exponents. Since a contracted gaussian
usually has orbital exponents over a rather wide range, it is clear that many of these primitive integral batches will
contribute negligibly to the final integral values. In order to reduce the overhead, the parameter TCut is introduced.
If the common prefactor Ipqrs is smaller than TCut, the primitive integral batch is skipped. However, Ipqrs is not a
rigorous upper bound to the true value of the primitive integral. Thus, one has to be more conservative with TCut
than with Thresh. In practice it appears that choosing TCut=0.01*Thresh provides sufficient accuracy, but the user
is encouraged to determine the influence of TCut if it is suspected that the accuracy reached in the integrals is not
sufficient.
304 6 Detailed Documentation
HINT:
• If the direct SCF calculation is close to convergence but fails to finally converge, this maybe related to a
numerical problem with the Fock matrix update procedure – the accumulated numerical noise from the update
procedure prevents sharp convergence. In this case, set Thresh and TCut lower and/or let the calculation more
frequently reset the Fock matrix (DirectResetFreq).
NOTE:
• For a Direct or SemiDirect calculation, there is no way to have Thresh larger than TolE. If the errors in the
Fock matrix are larger than the requested convergence of the energy, the change in energy can never reach
TolE. The program checks for that.
• In a SemiDirect SCF, the number of stored integrals increases with molecular size. It may be necessary to
increase TSize and TCost to make storage possible. It is usually not a good idea to produce integral files many
gigabytes in size, because this will lead to quite some I/O penalty, especially in the late stages of a calculation.
Within reasonable bounds however, SemiDirect calculations can be quite a bit faster than Direct calculations.
• The actual disk space used for all temporary files may easily be larger than MaxDisk. MaxDisk only pertains to
the two-electron integral files. Other disk requirements are not currently checked by the program and appear
to be uncritical.
6.7 The Second Order Many Body Pertubation Theory Module (MP2)
Throughout this section, indices i, j, k, . . . refer to occupied orbitals in the reference determinant, a, b, c, . . . to virtual
orbitals and p, q, r, . . . to general orbitals from either set while µ, ν, κ, τ, . . . refer to basis functions.
The standard (or full accuracy) MP2 module has two different branches. One branch is used for energy calculations,
the other for gradient calculations.
For standard MP2 energies, the program performs two half-transformations and the half-transformed integrals are
stored on disk in compressed form. This appears to be the most efficient approach that can also be used for medium
sized molecules. There is little the user can control in this module since there are no special requirements on core
memory. The module should parallelize acceptably well as long as I/O is not limiting.
For standard MP2 gradients, the program performs four quarter transformations that are ordered by occupied orbitals.
Here, the program massively benefits from large core memory (%maxcore) since this minimizes the number of batches
that are to be done. I/O demands are minimal in this approach.
6.7 The Second Order Many Body Pertubation Theory Module (MP2) 305
6.7.2 RI-MP2
The RI-MP2 module is of a straightforward nature. The program first transforms the three-index integrals (ia|P),
where ‘i’ is occupied, ‘a’ is virtual and ‘P’ is an auxiliary basis function that is orthogonalized against the Coulomb
metric. These integrals are stored on disk, which is not critical, even if the basis has several thousand functions. The
integral transformation is parallelized and has no specifically large core memory requirements.
In the next step, the integrals are read ordered with respect to the occupied labels and the exchange operators
Kij (a,b)= (ia|jb) = sum( (ia|P)(P|jb), P=1..NAux) are formed in the rate limiting O(N5 ) step. This step is done
with high efficiency by a large matrix multiplication and parallelizes well. From the exchange operators, the MP2
amplitudes and the MP2 energy is formed. The program mildly benefits from large core memory (%maxcore) as this
minimizes the number of batches and hence reads through the integral list.
The RI-MP2 gradient is also available. Here, all necessary intermediates are made on the fly.
In the RI approximation, one introduces an auxiliary fitting basis ηP (r) and then approximates the two-electron
integrals in the Coulomb metric as:
X
(pq|rs) ≈ (pq|P ) VP−1
Q (Q|rs) (6.52)
PQ
where VP Q = (P |Q) is a two-index electron-electron repulsion integral. As first discussed by Weigend and Häser, the
closed-shell case RI-MP2 gradient takes the form:
X X X
x
ERI−M P2 = 2 (µν|P )(x) cµi ΓP
iν +
x
VRS V−1/2 γV−1/2 + hDFx i (6.53)
RS
µνP i RS
The F-matrix derivative terms are precisely handled as in the non-RI case and need not be discussed any further. ΓP
ia
is a three-index two-particle ‘density’:
−1/2
X
ΓP
ia = (1 + δij ) t̃ij
ab VP Q (Q|jb) (6.54)
jbQ
X
ΓP
iν = cνa ΓP
ia (6.55)
a
−1/2
X
γP Q = ΓQ
ia (ia|R) VRP (6.56)
iaR
" #
−1/2
X X
LRI
ai = cµa 2 ΓP
iν (µν|Q) VP Q (6.57)
µ P Qν
In a similar way, the remaining contributions to the energy weighted density matrix can be obtained efficiently. Note,
however, that the response operator and solution of the CP-SCF equations still proceed via traditional four-index
306 6 Detailed Documentation
integrals since the SCF operator was built in this way. Thus, while the derivatives of the three-index integrals are
readily and efficiently calculated, one still has the separable contribution to the gradient, which requires the derivatives
of the four-index integrals.
The RI-MP2 energy and gradient calculations can be drastically accelerated by employing the RIJCOSX or the RIJDX
approximation.
A slightly more general form is met in the double hybrid DFT gradient. The theory is briefly described below.
The energy expression for perturbatively and gradient corrected hybrid functionals as proposed by Grimme is:
Z Z
1 ρ (r1 ) ρ (r2 ) 1 X σ σ
E = VN N + Ph+ +
Here VN N is the nuclear repulsion energy and hµν is a matrix element of the usual one-electron operator which
contains the kinetic energy and electron-nuclear attraction terms (habi denotes the trace of the matrix product ab).
As usual, the molecular spin-orbitals are expanded in atom centered basis functions (σ = α, β):
X
ψpσ (r) = cσµp ϕµ (r) (6.59)
µ
with MO coefficients cσµp . The total density is given by (real orbitals are assumed throughout):
X X
ρ (r) = |ψiσ (r)|2 = σ
Pµν ϕµ (r) ϕν (r) = ρα (r) + ρβ (r) (6.60)
iσ µνσ
The second term of eq. 6.58 represents the Coulombic self-repulsion. The third term represents the contribution of
the Hartree-Fock exchange with the two-electron integrals being defined as:
Z Z
−1
(µν|κτ ) = φµ (r1 ) φν (r1 ) r12 φκ (r2 ) φτ (r2 ) dr1 dr2 (6.61)
The mixing parameter ax controls the fraction of Hartree-Fock exchange and is of a semi-empirical nature. The
exchange correlation contribution may be written as:
Here, ExGGA [ρα , ρβ ] is the exchange part of the XC-functional in question and EcGGA [ρα , ρβ ] is the correlation part.
The parameter b controls the mixing of DFT correlation into the total energy and the parameter cDF is a global
scaling factor that allows one to proceed from Hartree-Fock theory (ax = 1,cDF = 0,cP T = 0) to MP2 theory
(ax = 1, cDF = 0, cP T = 1) to pure DFT (ax = 0, cDF = 1, cP T = 0) to hybrid DFT (0 < ax < 1, cDF = 1, cP T = 0)
and finally to the general perturbatively corrected methods discussed in this work (0 < ax < 1, cDF = 1, 0 < cP T < 1).
As discussed in detail by Grimme, the B2-PLYP functional uses the Lee-Yang-Parr (LYP) functional as correlation
6.7 The Second Order Many Body Pertubation Theory Module (MP2) 307
part, the Becke 1988 (B88) functional as GGA exchange part and the optimum choice of the semi-empirical parameters
was determined to be ax = 0.53, cP T = 0.27, cDF = 1, b = 1 − cP T . For convenience, we will suppress the explicit
reference to the parameters ax and b in the XC part and rewrite the gradient corrected XC energy as:
h i Z
EXC ρα , ρβ = f ρα , ρβ , γ αα , γ ββ , γ αβ dr (6.63)
0 0
~ σ ∇ρ
with the gradient invariants γ σσ = ∇ρ ~ σ . The final term in eq (48) represents the scaled second order perturbation
energy:
1 X D iα jα iα jα + E 1 X D iβ jβ iβ jβ + E X D i j E
EP T 2 = t K̄ + t K̄ + t α β K̄iα jβ + (6.64)
2 i <j 2 i <j i ,j
α α β β α β
The PT2 amplitudes have been collected in matrices tiσ jσ0 with elements:
0 0 −1
i j 0 i j 0
taσσ bσ 0 = K̄aσσ bσ 0 εσi + εσj − εσa − εσb (6.65)
σ σ
i j 0
Where the orbitals were assumed to be canonical with orbital energies εσp . The exchange operator matrices are Kaσσ bσ 0 =
σ
i j 0
(iσ aσ |jσ0 bσ0 ) and the anti-symmetrized exchange integrals are defined as K̄aσσ bσ 0 = (iσ aσ |jσ0 bσ0 ) − δσσ0 (iσ bσ |σ aσ ).
σ
The orbitals satisfy the SCF equations with the matrix element of the SCF operator given by:
σ
X σ σ
Fµν = hµν + Pκτ (µν|κτ ) − ax Pκτ (µκ|ντ ) + cDF (µ|VXC |ν) (6.66)
κτ
The matrix elements of the XC–potential for a gradient corrected functional are: [96]
Z
α δf δf ~ ~ δf ~ ~
(µ|VXC |ν) = (ϕµ ϕν ) + 2 ∇ρα ∇ (ϕµ ϕν ) + ∇ρβ ∇ (ϕµ ϕν ) dr (6.67)
δρα (r) δγαα δγαβ
The energy in equation 6.58 depends on the MO-coefficients, the PT2-amplitudes and through VN N , VeN (in h)
and the basis functions also explicitly on the molecular geometry. Unfortunately, the energy is only stationary with
respect to the PT2 amplitudes since they can be considered as having been optimized through the minimization of
the Hylleraas functional:
1 X D iα jα iα jα + E 1 X D iβ jβ iβ jβ + E X D iα jβ iα jβ + E
0 α α+ D 0 β β+ E
EP T 2 = min t K̄ + t K̄ + t K̄ + D F + D F
t 2 2 i <j
i <j
α α i jβ β α β
(6.68)
0 XD i k k j E XD i k k j E
Dijα = − t α αt α α − t α βt β α (6.69)
kα kβ
0 X X
Dabα = tiα jα tiα jα + + tiβ jα + tiβ jα (6.70)
iα <jα iβ jα
308 6 Detailed Documentation
With analogous expressions for the spin-down unrelaxed difference densities. Minimization of this functional with
respect to the amplitudes yields the second order perturbation energy. The derivative of the SCF part of equation
6.58 with respect to a parameter ‘x’ is straightforward and well known. It yields:
D E
x
= VNxN + hPhx i + WSCF S(x) + Γµνκτ (µν|κτ )(x)
P
ESCF
n µνκτ o
X R (x)
+ δf
ρ + 2 δγδfσσ ∇ρ ~ (x)
~ σ ∇ρ δf ~ ~ (x) dr
σ + δγ 0 ∇ρσ 0 ∇ρσ (6.71)
δρσ (r) σ σσ
σ
|{z}
(σ 0 6=σ)
Superscript ‘x’ refers to the derivative with respect to some perturbation ‘x’ while a superscript in parenthesis indicates
that only the derivative of the basis functions with respect to ‘x’ is to be taken. For example:
n o
(x) ∂ϕµ
σ
+ ϕµ ∂ϕ
P ν
ρσ = Pµν ∂x
ϕν ∂x
µν (6.72)
∂ϕ
hxµν = ∂xµ |ĥ|ϕν + ϕµ |ĥ| ∂ϕ
∂x
ν
+ ϕµ | ∂∂xĥ |ϕν
In equation 6.71, S is the overlap matrix and WSCF the energy weighted density:
At this point, the effective two-particle density matrix is fully separable and reads:
1 1 α α 1 β β
Γµνκτ = Pµν Pκτ − ax Pµκ Pντ − ax Pµκ Pντ (6.74)
2 2 2
The derivative of the PT2 part is considerably more complex, since EP T 2 is not stationary with respect to changes in
the molecular orbitals. This necessitates the solution of the coupled-perturbed SCF (CP-SCF) equations. We follow
the standard practice and expand the perturbed orbitals in terms of the unperturbed ones as:
X
ψpσ;x (r) = σ;x σ
Uqp ψq (r) (6.75)
q
The occupied-occupied and virtual-virtual blocks of U are fixed, as usual, through the derivative of the orthonormality
constraints:
σ;x 1 σ(x)
Uij = − Sij (6.76)
2
σ;x 1 σ(x)
Uab = − Sab (6.77)
2
σ(x) (x)
Where Spq = µν cσµp cσνq Sµν . The remaining virtual-occupied block of Ux must be determined through the solution
P
of the CP-SCF equations. However, as shown by Handy and Schaefer, this step is unnecessary and only a single set of
CP-SCF equations (Z-vector equations) needs to be solved. To this end, one defines the Lagrangian:
6.7 The Second Order Many Body Pertubation Theory Module (MP2) 309
Lα σ 0
(aα cα |jα bα ) ticααjbαα − 2 (kα iα |jα bα ) tkaαα jbαα
P P
ai = R (D )ai + 2
jα bα cα jα kα bα
j i j k (6.79)
(aα cα |jβ bβ ) tbββ cαα − 2 (kα iα |jβ bβ ) tbββ aαα
P P
+2
jβ bβ cα jβ kα bβ
An analogous equation holds for Lβai . The matrix elements of the response operator Rα (D0 ) are best evaluated in the
AO basis and then transformed into the MO basis. The AO basis matrix elements are given by:
0
Rα (D0 )µν = 0 α
P
2Dκτ (µν|κτ ) − Dκτ [(µκ|ντ ) + (νk|µτ )]
κτ
h
δ2 f 2
~ α δ2 f ~ β 0 ~
ζ (D0 ) (φµ φν ) + 2 δγδααfδζ ∇ρ
P R
+ δρα δζ P + δγαβ δζ ∇ρP ζ (D ) ∇ (φµ φν )
ζ i
~ α
+ 2 δγδfαα ∇ρ δf ~ β ~
D0 + δγαβ ∇ρD0 ∇ (φµ φν ) dr
where
ζ D0 = ρ α β 0 0 0
D0 , ρD0 , γαα D , γββ D , γαβ D (6.80)
The ζ-gradient-parameters are evaluated as a mixture of PT2 difference densities and SCF densities. For example:
With
X 0
ρα
D0 (r) =
α
Dµν φµ (r) φν (r) (6.82)
µν
X
ρα
P (r) =
α
Pµν φµ (r) φν (r) (6.83)
µν
Having defined the Lagrangian, the following CP-SCF equations need to be solved for the elements of the ‘Z-vector’:
The solution defines the occupied-virtual block of the relaxed difference density, which is given by:
σ
Dσ = D0 + Z σ (6.85)
For convenience, Dσ is symmetrized since it will only be contracted with symmetric matrices afterwards. After having
solved the Z-vector equations, all parts of the energy weighted difference density matrix can be readily calculated:
1 α α 1 X X k j
Wijα;P T 2 = − Dij εi + εα
j − R (D)ij − (iα aα |kα bα ) tjaααkbαα − (iα aα |kβ bβ ) tbββaαα (6.86)
2 2
kα aα bα kβ aα bβ
α;P T 2 1 α α X X j i
Wab = − Dab (εa + εα
b)− (iα aα |jα cα ) tibααjcαα − (iα aα |jβ cβ ) tcββ bαα (6.87)
2 i j c i j c
α α α α β β
310 6 Detailed Documentation
j k
α;P T 2
X X
Wai = −2 (kα iα |jα bα ) tkaαα jbαα − 2 (kα iα |jβ bβ ) tbββ aαα (6.88)
jα kα bα jβ kα bβ
α;P T 2
Wia = −εα α
i Zai (6.89)
Once more, analogous equations hold for the spin-down case. With the relaxed difference density and energy
weighted density matrices in hand, one can finally proceed to evaluate the gradient of the PT2 part as (WP T 2 =
Wα;P T 2 + Wβ;P T 2 ):
D E
EPx T 2 = hDhx i + WP T 2 S(x) + Γµνκτ (µν|κτ )(x)
P PT2
Z µνκτ
P δf (x) δf
r r
(x) δf
r r
(x) (6.90)
+ δρσ (r)
ρ σ + 2 δγσσ
∇ρ σ ∇ρ σ + δγσσ
∇ρ σ 0 ∇ρσ dr
σ
(σ6=σ 0 )
x
The final derivative of eq. 6.58 is of course the sum ESCF + cP T EPx T 2 . Both derivatives should be evaluated
simultaneously in the interest of computational efficiency.
Note that the exchange-correlation contributions to the gradient take a somewhat more involved form than might
have been anticipated. In fact, from looking at the SCF XC-gradient (eq. 6.71) it could have been speculated that the
σ(x)
PT2 part of the gradient is of the same form but with ρP being replaced by Ĥ, the relaxed PT2 difference density.
This is, however, not the case. The underlying reason for the added complexity apparent in equation 6.90 is that
the XC contributions to the PT2 gradient arise from the contraction of the relaxed PT2 difference density with the
derivative of the SCF operator. Since the SCF operator already contains the first derivative of the XC potential
and the PT2 energy is not stationary with respect to changes in the SCF density, a response type term arises which
requires the evaluation of the second functional derivative of the XC-functional. Finally, as is well known from MP2
gradient theory, the effective two-particle density matrix contains a separable and a non-separable part:
ΓP T2 α α β β NS
µνκτ = Dµν Pκτ − Dµκ Pντ − Dµκ Pντ + Γµνκτ (6.91)
i j i j
X X X
ΓN S
µνκτ = cα α α α iα jα
µi cνa cκj cτ b taα bα + cβµi cβνa cβκj cβτb taββ bββ + 2 cα α β β α β
µi cνa cκj cτ b taα bβ (6.92)
iα jα aα bα iβ jβ aβ bβ iα jβ aα bβ
Thus, the non-separable part is merely the back-transformation of the amplitudes from the MO to the AO basis. It is,
however, important to symmetrize the two-particle density matrix in order to be able to exploit the full permutational
symmetry of the AO derivative integrals.
The MP2 energy can be regarded as being stationary with respect to the MP2 amplitudes, since they can be considered
as having been optimized through the minimization of the Hylleraas functional:
n D E D Eo
EM P 2 = min 2 Ψ1 |Ĥ|Ψ0 + Ψ1 |Ĥ0 − E0 |Ψ1 (6.93)
t
Ĥ is the 0th order Hamiltonian as proposed by Møller and Plesset, Ψ0 is the reference determinant, Ψ1 is the first-order
wave function and E0 = EHF = hΨHF | Ĥ |ΨHF iis the reference energy. The quantities t collectively denote the MP2
amplitudes.
6.7 The Second Order Many Body Pertubation Theory Module (MP2) 311
The fundamental idea of the OO-MP2 method is to not only minimize the MP2 energy with respect to the MP2
amplitudes, but to minimize the total energy additionally with respect to changes in the orbitals. Since the MP2
energy is not variational with respect to the MO coefficients, no orbital relaxation due to the correlation field is taken
into account. If the reference determinant is poor, the low-order perturbative correction then becomes unreliable.
This may be alleviated to a large extent by choosing better orbitals in the reference determinant. Numerical evidence
for the correctness of this assumption will be presented below.
In order to allow for orbital relaxation, the Hylleraas functional can be regarded as a functional of the wavefunction
amplitudes t and the orbital rotation parameters R that will be defined below. Through a suitable parameterization it
becomes unnecessary to ensure orbital orthonormality through Lagrange multipliers. The functional that we minimize
reads:
Ψ0 is the reference determinant. However, it does no longer correspond to the Hartree-Fock (HF) determinant.
Hence, the reference energy E0 [R] = hΨ0 [R]| Ĥ |Ψ0 [R]i also changes during the variational process and is no longer
stationary with respect to the HF MO coefficients. Obviously, E0 [R] > EHF since the HF determinant is, by
construction, the single determinant with the lowest expectation value of the full Hamiltonian.
X 1X
E0 [R] = hi| h |ii + hij||iji (6.95)
i
2 ij
1 X ij E
|Ψ1 i = tab | Ψab
ij (6.96)
4
ijab
A conceptually important point is that Brillouin’s theorem [265] is no longer obeyed since the Fock matrix will
contain off-diagonal blocks. Under these circumstances the first-order wavefunction would contain contributions from
single excitations. Since the orbital optimization brings in all important effects of the singles we prefer to leave them
out of the treatment. Any attempt to the contrary will destroy the convergence properties. We have nevertheless
contemplated to include the single excitations perturbatively:
(2)
X |Fia |2
ESingles = − (6.97)
ia
εa − εi
The perturbative nature of this correction would destroy the stationary nature of the total energy and is hence not
desirable. Furthermore, results with inclusion of single excitation contributions represent no improvement to the
results reported below. They will therefore not be documented below and henceforth be omitted from the OO-MP2
method by default.
The explicit form of the orbital-optimized MP2 Hylleraas functional employing the RI approximation (OO-RI-MP2)
becomes:
X 1X X 0 X X
L∞ [t, R] = hi|ĥ |ii + hij||iji + (ia|P )ΓiaP + Dij Fij + Dab Fab (6.98)
i
2 ij iaP ij ab
with:
312 6 Detailed Documentation
0 X X
ΓiaP = VP−1
Q (Q|jb)tij
ab (6.99)
Q jb
Z Z
1
(ia|P ) = ψi (r1 )ψa (r1 ) ηP (r2 )dr1 dr2 (6.100)
|r1 − r2 |
Z Z
1
(P |Q) = ηp (r1 ) ηQ (r2 )dr1 dr2 (6.101)
|r1 − r2 |
Here, {ψ} is the set of orthonormal molecular orbitals and {η} denotes the auxiliary basis set. Fpq denotes a Fock
matrix element:
X
Fpq = hp| ĥ |qi + hpk||qki (6.102)
k
and it is insisted that the orbitals diagonalize the occupied and virtual subspaces, respectively:
P ik jk
Dij = − 21 tab tab
1
Pkabij ij (6.104)
Dab = 2 tac tbc
ijc
where the MP2 amplitudes in the case of a block diagonal Fock matrix are obtained through the condition ∂Lij∞ = 0:
∂tab
hij||abi
tij
ab = − (6.105)
εa + εb − εi − εj
The orbital changes are parameterized by an anti-Hermitian matrix R and an exponential Ansatz,
Rai |ai − 12
P P
exp(R) |ii = |ii + Rbi Rbj |ji + ...
a jb
(6.107)
exp(R) |ai = |ai − Rai |ii − 12
P P
Raj Rbj |bi + ...
i jb
Through this Ansatz it is ensured that the orbitals remain orthonormal and no Lagrangian multipliers need to be
introduced. The first-order expansion of the Fock operator due to the orbital rotations are:
(1)
X
Fpq [R] = Fpq [0] + Rpq + Rrp Frq [0] + Rrq Fpr [0] (6.108)
r
6.7 The Second Order Many Body Pertubation Theory Module (MP2) 313
(1)
X
Rpq = Rck {hpc||qki + hpk||qci} (6.109)
kc
The first-order energy change becomes hpq ≡ hp| ĥ |qi , gpqrs ≡ hpq||rsi :
The condition for the energy functional to be stationary with respect to the orbital rotations ∂L∂R
∞ [t,R]
ai
= 0 , yields
the expression for the orbital gradient and hence the expression for the OO-RI-MP2 Lagrangian.
∂L∞ [t, R] X X
≡ gai = 2Fai + 2 Dij Faj − 2 Dab Fib + R(1) (D)ai (6.111)
∂Rai j
X X b
+2 (ac|P )Γ0P
ia − 2 (ik|P )Γ0P
ia
cP kP
The goal of the orbital optimization process is to bring this gradient to zero. There are obviously many ways to
achieve this. In our experience, the following simple procedure is essentially satisfactory. We first build a matrix B in
the current MO basis with the following structure:
where ∆ is a level shift parameter. The occupied/occupied and virtual/virtual blocks of this matrix are arbitrary
but their definition has a bearing on the convergence properties of the method. The orbital energies of the block
diagonalized Fock matrix appear to be a logical choice. If the gradient is zero, the B-matrix is diagonal. Hence one
obtains an improved set of orbitals by diagonalizing B.
In order to accelerate convergence a standard DIIS scheme is used. [97, 159] However, in order to carry out the DIIS
extrapolation of the B-matrix it is essential that a common basis is used that does not change from iteration to
iteration. Since the B-matrix itself is defined in the molecular orbitals of the current iteration we choose as a common
set of orthonormal orbitals the MOs of the HF calculation. The extrapolation is carried out in this basis and the
extrapolated B-matrix is transformed back to the current set of MOs prior to diagonalization. Obviously, the same
strategy can be used for orbital optimization in any method for which an orbital gradient is available.
For well behaved cases this simple scheme converges in 5-10 iterations. Transition metals and more complicated
molecules may require up to 20 iterations and level shifting in order to achieve convergence.
P
Upon convergence the sum of the matrix D and the density of the reference determinant Pµν = cµi cνi form the
i
true one-particle density matrix of the OO-MP2 approach that can be used for property or gradient calculations.
314 6 Detailed Documentation
ORCA features a variety of single-reference correlation methods for single point energies (restricted to a RHF or RKS
determinant in the closed-shell case and a UHF or UKS determinant in the open-shell case; quasi-restricted orbitals
(QROs) [266] are also supported in the open-shell case). They are all fairly expensive but maybe be used in order to
obtain accurate results in the case that the reference determinant is a good starting point for the expansion of the
many-body wavefunction. The module is called orca mdci for “matrix driven configuration interaction”. This is a
rather technical term to emphasize that if one wants to implement these methods (CCSD, QCISD etc) efficiently, one
needs to write them in terms of matrix operations which can drive pretty much every computer at peak performance.
Let us first briefly describe the theoretical background of the methods that we have implemented in ORCA.
6.8.1 Theory
We start from the full CI hierarchy in which the wavefunction is expanded as:
where |0i is a single-determinant reference and S,D,T,Q,. . . denote the single, double, triple quadruple and higher
excitations relative to this determinant at the spin-orbital level. As usual, labels i, j, k, l refer to occupied orbitals in
|0i, a, b, c, d to unoccupied MOs and p, q, r, s to general MOs. The action of the second quantized excitation operators
aai = a+ a i
a ai on |0i lead to excited determinants |Φi i that enter |Ψi with coefficients Ca . The variational equations
are:
D E D E
Φab ij ab
ij |H − E0 | 0 + S + D = EC Cab − Φij |H − E0 | T + Q (6.115)
The total energy is the sum of the reference energy E0 = h0 |H| 0i and the correlation energy
EC = h0 |H| S + Di (6.116)
which requires the exact singles- and doubles amplitudes to be known. In order to truncate the series to singles- and
doubles one may either neglect the terms containing the higher excitations on the right hand side (leading to CISD)
or approximate their effect thereby loosing the variational character of the CI method (CCSD, QCISD and CEPA
ij ab
methods). Defining the one- and two-body excitation operators as Ĉ1 = ia Cai aai , Ĉ2 = 14 ijab Cab
P P
aij one can
proceed to approximate the triples and quadruples by the disconnected terms:
1 2
|Qi = Ĉ2 |0i (6.118)
2
6.8 The Single Reference Correlation Module 315
As is well known, the CCSD equations contain many more disconnected contributions arising from the various powers
of the Ĉ1 operator (if one would stick to CC logics one would usually label the cluster amplitudes with tia , tij
ab ,. . . and
the n-body cluster operators with T̂n ; we take a CI point of view here). In order to obtain the CEPA type equations
from (6.114-6.118), it is most transparent to relabel the singles and doubles excitations with a compound label P for
the internal indices (i) or (ij ) and x for (a) or (ab). Then, the approximations are as follows:
1D x 1 X Q R
x
E
ΦP (H − E0 ) Ĉ22 0 = Cy Cz ΦP |H − E0 | Φyz
(6.119)
QR
2 2 QRyz
X
≈ CxP CyQ ΦxP |H| Φxy
PQ (6.120)
Qy
X X
= CxP CyQ 0 |H| ΦyQ − CxP CyQ 0 |H| ΦyQ
(6.121)
Qy Qy∪P x
!
X
≈ CxP EC − εQ (6.122)
Q∪P
Here the second line contains the approximation that only the terms in which either Qy or Rz are equal to Px
are kept (this destroys the unitary invariance) and the fourth line contains the approximation that only ‘exclusion
principle violating’ (EPV) terms of internal labels are considered. The notation Qy ∪ P x means ”Qy joint with Px “
(containing common orbital indices) and εQ is the pair correlation energy. The EPV terms must be subtracted from
the correlation energy since they arise from double excitations that are impossible due to the fact that an excitation
out of an occupied or into an empty orbital of the reference determinant has already been performed. Inserting eq
6.122 into eq 6.115 CxP EC cancels and effectively is replaced by the ‘partial correlation energy’ Q∪P εQ .
P
The resulting equations thus have the appearance of a diagonally shifted (‘dressed’) CISD equation
hΦxP |H − E0 + ∆| 0 + S + Di = 0. If the second approximation mentioned above is avoided Malrieu’s (SC)2 -CISD
arises. [98, 187–190] Otherwise, one obtains CEPA/3 with the shift:
X
− ∆ij
ab = (εik + εjk ) − εij (6.123)
k
CEPA/2 is obtained by −∆ij ab = εij and CEPA/1 is the average of the CEPA/2 and CEPA/3. As mentioned by
Ahlrichs, [267] no consensus appears to exist in the literature for the appropriate shift on the single excitations. If one
proceeds straightforwardly in the same way as above, one obtains:
!
D E X
Φai i
(H − E0 ) Ĉ1 Ĉ2 0 ≈ Ca EC − 2 εik (6.124)
k
as the appropriate effect of the disconnected triples on the singles. In has been assumed here that only the singles
|Φai i in Ĉ1 contribute to the shift. If |0i is a HF determinant, the effect of the disconnected triples in the doubles
projection vanishes under the same CEPA approximations owing to Brillouin’s theorem. Averaged CEPA models
are derived by assuming that all pair correlation energies are equal (except εii = 0). As previously discussed by
Gdanitz [268], the averaging of CEPA/1 yields n2 EC and CEPA/3 EC n(n−1) 4n−6
where n is the number of correlated
electrons. These happen to be the shifts used for the averaged-coupled pair functional (ACPF [269]) and averaged
quadratic coupled cluster (AQCC [270]) methods respectively. However, averaging the singles shift of eq 6.124 gives
4
n C
E . The latter is also the leading term in the expansion of the AQCC shift for large n. In view of the instability
of ACPF in certain situations, Gdanitz has proposed to use the AQCC shift for the singles and the original ACPF
316 6 Detailed Documentation
shift for the doubles and called his new method ACPF/2 [269]. Based on what has been argued above, we feel that it
would be most consistent with the ACPF approach to simply use n4 EC as the appropriate singles shift. We refer to
this as NACPF.
It is readily demonstrated that the averaged models may be obtained by a variation of the modified correlation energy
functional:
h0 + S + D |H − E0 | 0 + S + Di
EC = (6.125)
1 + gs hS|Si + gD hD|Di
X Φxp |H − E0 | ΦyQ
X Φxp |H| 0
EC = 2 + p (6.126)
Px
NP P Qxy
NP NQ
with
X X
NP = 1 + TP Q (CyQ )2 (6.127)
Q y
The topological matrix for pairs P =(ij ) and Q = (kl) is chosen as: [118]
with ni being the number of electrons in orbital i in the reference determinant. The singles out of orbital i are formally
equated with P = (ii). At the spin-orbital level, ni = 1, for closed shells ni = 2. Using the same toplogical matrix
P
in ∆P = Q TP Q εQ one recovers the CEPA/1 shifts for the doubles in eq 6.124. It is straightforward to obtain the
CPF equivalents of the other CEPA models by adjusting the TP Q matrix appropriately. In our program, we have
done so and we refer below to these methods as CPF/1, CPF/2 and CPF/3 in analogy to the CEPA models (CPF/1
≡CPF). In fact, as discussed by Ahlrichs and co-workers, variation of the CPF-functional leads to equations that very
closely resemble the CEPA equation and can be readily implemented along the same lines as a simple modification of
a CISD program. Ahlrichs et al. argued that the energies of CEPA/1 and CPF/1 should be very close. We have
independently confirmed that in the majority of cases, the total energies predicted by the two methods differ by less
than 0.1 mEh.
An alternative to the CPF approach which is also based on variational optimization of an energy functional is the
VCEPA method [271]. The equations resulting from application of the variational principle to the VCEPA functional
are even closer to the CEPA equations than for CPF so that the resulting energies are practically indistinguishable
from the corresponding CEPA values. The VCEPA variants are referred to as VCEPA/1, VCEPA/2, and VCEPA/3
in analogy to CEPA and CPF. A strictly size extensive energy functional (SEOI) which is invariant with respect to
unitary transformations within the occupied and virtual orbital subspaces is also available [272] (an open-shell version
is not implemented yet).
6.8 The Single Reference Correlation Module 317
Again, a somewhat critical point concerns the single excitations. They do not account for a large fraction of the
correlation energy. However, large coefficients of the single excitations lead to instability and deterioration of the
results. Secondly, linear response properties are highly dependent on the effective energies of the singles and their
balanced treatment is therefore important. Since the CEPA and CPF methods amount to shifting down the diagonal
energies of the singles and doubles, instabilities are expected if the effective energy of an excitation approaches the
reference energy of even falls below it. In the CPF method this would show up as denominators NP that are too
small. The argument that the CPF denominators are too small has led Chong and Langhoff to the proposal of the
MCPF method which uses a slightly more elaborate averaging than (NP NQ )1/2 [62].15 However, their modification
was solely based on numerical arguments rather than physical or mathematical reasoning. In the light of eq 6.124
and the performance of the NACPF, it appears to us that for the singles one should use twice the TP Q proposed by
Ahlrichs and co-workers. The topological matrix TP Q is modified in the following way for the (very slightly) modified
method to which we refer to as NCPF/1:
Tij,k = 0 (6.130)
δik + δil
Ti,kl = 2 (6.131)
ni
Ti,k = 0 (6.132)
(note that TP Q 6= TQP for this choice). Thus, the effect of the singles on the doubles is set to zero based on the
analysis of the CEPA approximations and the effect of the singles on the singles is also set to zero. This is a sensible
choice since the product of two single excitations is a double excitation which is already included in the SD space
and thus none of them can belong to the outer space. It is straightforward to adapt this reasoning about the single
excitations to the CEPA versions as well as to NCPF/2 and NCPF/3.
The aforementioned ambiguities arising from the use of single excitations in coupled pair methods can be avoided
by using correlation-adapted orbitals instead of Hartree-Fock orbitals thus eliminating the single excitations. There
are two alternatives: (a) Brueckner orbitals and (b) optimized orbitals obtained from the variational optimization of
the electronic energy with respect to the orbitals. Both approaches have already been used for the coupled cluster
doubles (CCD) method [273, 274] and later been extended to coupled pair methods [275]. In the case of CCD, orbital
optimization requires the solution of so-called Λ (or Z vector) equations [276]. There is, however, a cheaper alternative
approximating the Z vector by a simple analytical formula [277].
Futhermore, the parametrized coupled cluster (pCCSD) method of Huntington and Nooijen [278], which combines the
accuracy of coupled pair type methods for (usually superior to CCSD, at least for energies and energy differences) with
the higher stability of the coupled cluster methods, is an attractive alternative. Comprehensive numerical tests [279]
indicate that particularly pCCSD(-1,1,1) (or pCCSD/1a) and pCCSD (-1.5,1,1) (or pCCSD/1b) have a great potential
for accurate computational thermochemistry.
15
This method – although it has been rather extensively used in the past – is not implemented in ORCA. We
recommend to use our NCPF/1 instead.
318 6 Detailed Documentation
Proceeding from spin-orbitals to the spatial orbitals of a closed-shell determinant leads to the actual working equations
of this work. Saebo, Meyer and Pulay have exploited the generator state formalism to arrive at a set of highly efficient
equations for the CISD problem [66]. A similar set of matrix formulated equations for the CCSD and QCISD cases
has been discussed by Werner and co-workers [280] and the MOLPRO implementation is widely recognized to be
particular efficient. Equivalent explicit equations for the CISD and CCSD methods were published by Scuseria et
al. [281]16 The doubles equations for the residual ‘vector’ σ are (i 6 j, all a, b):
ij ij Pn kj
o P
ij kl
+ K Cij ab + FV Cij + Cij FV ab − ik
σab = Kab Fjk Cab + Fik Cab + Kkl Cab
k kl
2Cik − Cik+ Kkj − 12 Jkj + Kik − 12 Jik 2Ckj − Ckj+ ab
P
+
k
P 1 ik+ jk+ 1 ik kj+
+ Jjk Cik + Ckj Jik+ ab
− 2
C J + 2J C
k (6.133)
+Cai Fbj + Cbj Fai −
P ji k ij k
Ca + Kia Cj + Kja Ci b
Kka Cb + Kkb
k
ij
−∆ij Cab
kj
σai = Fai + FV Ci a − Fij Caj − ik ik
P P
2Kjb − Jjb Cba
j jkb
2Kij − Jij Cj + Fj 2Cij+ − Cij + 2Kia − Kia+ Cij+ a
P
+ (6.134)
j
−∆i Cai
X
K Cij = ij
(ac|bd) Ccd (6.135)
ab
cd
pq
Krs = (pr|qs) (6.136)
pq
Jrs = (pq|rs) (6.137)
X
hABi = Apq Bqp (6.138)
pq
The two-electron integrals are written in (11|22) notation and F is the closed-shell Fock operator with FV being its
ij
virtual sub-block. We do not assume the validity of Brillouin’s theorem. The amplitudes Cai , Cab have been collected
i ij i ij
in vectors C and matrices C wherever appropriate. The shifts ∆ and ∆ are dependent on the method used and
are defined in Table 6.7 for each method implemented in ORCA.
16
Our coupled cluster implementation is largely based on this nice paper. The equations there have been extensively
verified to be correct.
6.8 The Single Reference Correlation Module 319
Table 6.7: Summary of the diagonal shifts used in various singles- and doubles methods discussed in this chapter. The
quantities εi and εij are the correlation energy increments brought about by the single- and the double
excitations respectively. The partial denominators for the CPF type methods Ni and Nij are specified in
eq 6.127.
Method Doubles Shift Singles Shift
CISD EC EC
CEPA/0 0 0
1 1 1 1
P P
CEPA/1 2
(εi + εj ) + 4
(εik + εjk ) ε
2 ii
+ 2
εik
k k
CEPA/2 δij εi + εij εi + εii
(εi + εj ) − δij εi − εij + 12
P P
CEPA/3 (εik + εjk ) εi + εik
k k
1
P P
NCEPA/1 4
(εik + εjk ) εii + εik
k k
NCEPA/2 εij 2εii
1
P P
NCEPA/3 −εij + 2
(εik + εjk ) 2 εik
k k
1 εi εj 1
P εik εjk 1 εii 1
P εik
CPF/1 Nij (
2 Ni
+ Nj
)+ 4
(N ik
+ Njk
) Ni 2 Nii
+ 2 Nik
n k o n k o
εi εij εi εii
CPF/2 Nij δij N i
+ Nij
Ni N + Nii
i
εi εj εij P εik εjk εi P εik
CPF/3 Nij Ni
(1 − δij ) + Nj − Nij + 21 ( Nik + Njk
) N i Ni + Nik
k k
1
P εik εjk εii εik
N (N + )
P
NCPF/1 4 ij ik Njk Ni N ii
+ Nik
k k
ε εii
NCPF/2 Nij Nijij 2Ni N
ii
ε P εik εjk
P εik
NCPF/3 Nij − Nijij + 12 ( Nik + ) 2Ni Nik
Njk
k k
2 2
ACPF E
n C
E
n C
h i
2 (n−3)(n−2)
ACPF/2 E
n C
1− n(n−1)
EC
2 4
NACPF E
n C
E
n C
h i h i
(n−3)(n−2) (n−3)(n−2)
AQCC 1− n(n−1)
EC 1− n(n−1)
EC
The QCISD method requires some slight modifications. We found it most convenient to think about the effect of the
nonlinear terms as a “dressing” of the integrals occurring in equations 6.133 and 6.134. This attitude is close to the
recent arguments of Heully and Malrieu and may even open interesting new routes towards the calculation of excited
states and the incorporation of connected triple excitations. [282] The dressed integrals are given by:
XD E
F̄ik = Fik + Cil 2Kkl − Kkl+ (6.139)
l
X n kl kl o
F̄ab = Fab − C 2K − Kkl+ (6.140)
ab
kl
X
F̄kc = Fkc + 2Kkl − Kkl+ Cl (6.141)
l
D E
ij ij
K̄kl = Kkl + Kkl Tkl+ (6.142)
ij ij
X
1
K̄ab = Kab + Cik Kkj − Kjk + Cki Kkj (6.143)
2 ab
k
320 6 Detailed Documentation
Xn o
J¯ab
ij ij
= Jab + Cki Kjk (6.144)
ab
k
The CCSD method can be written in a similar way but requires 15 additional terms that we do not document here.
They may be taken conveniently from our paper about the LPNO-CCSD method [283].
A somewhat subtle point concerns the definition of the shifts in making the transition from spin-orbitals to spatial
orbitals. For example, the CEPA/2 shift becomes in the generator state formalism:
D E 1 αα 2 αβ 1 αα 1 αβ
− Φ̃ab ij
ij |∆ |Ψ = ij
Cab εij + εij + ij
Cba − εij + εij (6.145)
3 3 3 3
(Φ̃ab
ij is a contravariant configuration state function, see Pulay et al. [276]. The parallel and antiparallel spin pair
energies are given by:
1 X h ij i
εαα
ij =
ij
Kab − Kba ij
Cab ij
− Cba (6.146)
2
ab
1 X ij ij
εαβ
ij = Kab Cab (6.147)
2
ab
This formulation would maintain the exact equivalence of an orbital and a spin-orbital based code. Only in the
(unrealistic) case that the parallel and antiparallel pair correlation energies are equal the CEPA/2 shift of 6.7 arise.
However, we have not found it possible to maintain the same equivalence for the CPF method since the electron
pairs defined by the generator state formalism are a combination of parallel and antiparallel spin pairs. In order to
maintain the maximum degree of internal consistency we have therefore decided to follow the proposal of Ahlrichs and
co-workers and use the topological matrix TP Q in equation 6.128 and the equivalents thereof in the CEPA and CPF
methods that we have programmed.
We have used a non-redundant set of three spin cases (αα, ββ, αβ) for which the doubles amplitudes are optimized
separately. The equations in the spin-unrestricted formalism are straightforwardly obtained from the corresponding
spin orbital equations by integrating out the spin. For implementing the unrestricted QCISD and CCSD method,
we applied the same strategy (dressed integrals) as in the spin-restricted case. The resulting equations are quite
cumbersome and will not be shown here explicitly [284].
Note that the definitions of the spin-unrestricted CEPA shifts differ from those of the spin-restricted formalism
described above (see Kollmar et al. [284]). Therefore, except for CEPA/1 and VCEPA/1 (and of course CEPA/0), for
which the spin-adaptation of the shift can be done in a consistent way, CEPA calculations of closed-shell molecules
yield slightly different energies for the spin-restricted and spin-unrestricted versions. Since variant 1 is also the most
accurate among the various CEPA variants [285], we recommend to use variant 1 for coupled pair type calculations.
For the variants 2 and 3, reaction energies of reactions involving closed-shell and open-shell molecules simultaneously
should be calculated using the spin-unrestricted versions only.
A subtle point for open-shell correlation methods is the choice of the reference determinant [286]. Single reference
correlation methods only yield reliable results if the reference determinant already provides a good description of the
systems electronic structure. However, an UHF reference wavefunction suffers from spin-contamination which can spoil
the results and lead to convergence problems. This can be avoided if quasi-restricted orbitals (QROs) are used [266,282]
since the corresponding wavefunction is an eigenfunction of the Ŝ 2 operator and thus, no spin-contamination will
6.8 The Single Reference Correlation Module 321
appear. The coupled pair and coupled cluster equations will be still solved in a spin-unrestricted formalism but the
energy will be slightly higher compared to the results obtained with a spin-polarized UHF reference determinant.
Furthermore, especially for more difficult systems like e.g. transition metal complexes, it is often advantageously to
use Kohn-Sham (KS) orbitals instead of HF orbitals.
The MDCI module is fairly easy to use. The flags for the “simple” input lines have been described in section 3.2. The
detailed listing of options is found below:
The complete active space self-consistent field (CASSCF) method is a special form a multiconfigurational SCF method
and can be thought of as an extension of the Hartree-Fock method. It is a very powerful method to study static
correlation effects and a solid basis for MR-CI and MR-PT treatments. It can be applied to the ground state and
excited states or averages thereof. The implementation in ORCA is fairly general and reasonably efficient. However,
CASSCF calculations are fairly complex and ultimately require a lot of insight from the user in order to be successful.
E X E
S
ΨI = kCkl ΦS (6.148)
k
Here, ΨS I is the CASSCF N-electron wavefunction for state I with total spin S. The sect of ΦS k is a set of
configuration state functions (for example linear combination of Slater determinants) each adapted to a total spin S.
The expansion coefficients CkI represent the first set of variational parameters. Each CSF is constructed from a common
P
set of orthonormal molecular orbitals ψi (r) which are in turn expanded in basis functions ψi (r) = µ cµi φµ (r). The
MO coefficients cµi form the second set of variational parameters.
The energy. The energy of the CASSCF wavefunction is given by the Rayleigh quotient:
D E
ΨS
S
I ĤBO ΨI
E (c, C) = (6.149)
hΨS S
I |ΨI i
And represent and upper bound to the true total energy. However, CASSCF calculations are not designed to provide
values for total energy which are close to the exact energy. The value of a CASSCF calculation is rather to provide
a qualitatively correct wavefunction of reasonable quality and which forms (if desired) a good starting point for a
treatment of dynamic correlation.
The CASSCF method is fully variational in the sense that the energy is made stationary with respect to variations
in both sets of MO and CI coefficients. At convergence, the gradient of the energy with respect to the MO and CI
coefficients vanishes:
∂E (c, C)
=0 (6.150)
∂cµi
∂E (c, C)
=0 (6.151)
∂CkI
Orbital spaces. In CASSCF calculations, the MO space is divided into three user defined subspaces:
• The ‘internal orbitals’ are the orbitals which are doubly occupied in all configuration state functions (labels i,
j, k, l).
• The ‘active orbitals’ are the orbitals with variable occupation numbers in the various CSFs (labels t, u, v, w).
The wavefunction and energy is invariant with respect to unitary transformations within the three subspaces. The
special feature of a CASSCF wavefunction is that a fixed number of electrons is assigned to each subspace. The
internal subspace is of course completely filled but the CSFs in the active space constitute a full-CI of n-electrons in
m-orbitals. The CSF list is constructed such, however, that a wavefunction of well defined total spin (and potential
space) symmetry results. Such a wavefunction is referred to as a CASSCF(n,m) wavefunction. The CSF list
grows extremely quickly with the number of active orbitals and the number of active electrons (basically factorially).
Depending on the system, the limit of feasibility is roughly around ∼14 active orbitals or about one million CSFs in
the active space (future ORCA releases may be able to treat even longer expansions efficiently).
Since the orbitals within the subspaces are only defined up to a unitary transformation, the program needs to make
some canonicalization choice.
2. orbitals which diagonalize the CASSCF Fock matrix in the internal space and
3. orbitals which diagonalize the CASSCF Fock matrix in the external space.
State averaging. In many circumstances, it is desirable to optimize the orbitals not for a single state but for the
average of several states. In order to see what is done, the energy for state I is re-written as:
X X
EI (c, C) = Γp(I)
q hpq + pr(I)
Γqs (pq |rs ) (6.152)
pq pqrs
p(I) pr(I)
Here, Γq and Γqs are the one-and two-particle reduced electron density matrices for this state (labels p, q, r, s
span the internal and active subspaces):
D p S E
Γp(I)
q = ΨS
I Eq ΨI
(6.153)
pr(I) 1 D S p r E
ΨI Eq Es − δqr Esp ΨS
Γqs = I (6.154)
2
The average energy is simply obtained from averaging the density matrices using arbitrary weights wI that are user
defined but are constrained to sum to unity.
X
Γp(av)
q = wI Γqp(I) (6.155)
I
X
Γpr(av)
qs = wI Γpr(I)
qs (6.156)
I
X
wI = 1 (6.157)
I
Optimization of CASSCF wavefunctions. In general, except for trivial cases, CASSCF wavefunctions are
considerably more difficult to optimize than RHF (or UHF) wavefunctions. The underlying reason is that variations in
c and C maybe strongly coupled and the energy functional may have many local minima in (c,C) space. Consequently,
the choice of starting orbitals is of really high-importance and the choice which orbitals and electrons are included in
the active space has decisive influence on the success of a CASSCF study. In general, after transformation to natural
326 6 Detailed Documentation
orbitals, one can classify the active space orbitals by their occupation numbers which vary between 0.0 and 2.0. In
general, convergence problems are almost guaranteed if orbitals with occupation numbers close to zero or close to
2.0 are included in the active space. Occupation numbers between 0.02 and 1.98 are typically very reasonable and
should not lead to large convergence problems. The reason for the occurrence of convergence problems is that the
energy is only very weakly dependent on rotations between internal and active orbitals if the active orbital is almost
doubly occupied and similarly for the rotations between external and weakly occupied active orbitals. However, in
some cases (for example in the study of potential energy surfaces) it may not be avoidable to include weakly or almost
inactive orbitals in the active space and in these cases the use of the most powerful convergence aids is necessary (vide
infra). As in the case of single-determinant wavefunctions (RHF, UHF, RKS, UKS) there are first and second order
converging methods available. The first order CASSCF methods require the integrals transformed integrals (tu|vx)
with x belonging to any subspace. This is a very small subspace of the total transformed integral list and is readily
held in central storage even for larger calculations. On the other hand, second order CASSCF methods require the
integrals (pq|xy) and (px|qy) (p, q = internal, active; x, y = any orbital). This is a fairly large set of integrals and their
generation is laborious in terms of CPU time and disk storage. Second order CASSCF calculations are therefore more
limited in the size of the molecules which can be well treated. It would be possible to basically avoid the integral
transformation also in the case of second-order CASSCF calculations and proceed to fully direct calculations. Such
calculations may become quite time consuming since there may be a large number of Fock matrix builds necessary.
Here, g is the orbital gradient (derivative of the total energy with respect to a non-redundant rotation between two
orbitals) and H is the orbital Hessian (second derivative of the energy with respect to two non-redundant orbital
rotations). The vector t (in intermediate normalization obtained from the CI like vector) summarizes the rotation
angles. The angles are used to define the antisymmetric matrix (Xpq = −Xqp is thus the rotation angle between
orbitals p and q):
!
0 t
X= (6.159)
−t 0
Which is used to parametrize the unitary matrix U = exp (X) which is used to update the orbitals according to:
Starting orbitals. You cannot be careful enough with your starting orbitals - Canonical orbitals or HF orbitals
from a RHF calculation are seldom a good choice! Usually DFT orbitals (quasi-restricted or RKS) often do better.
Alternatively, if CASSCF orbitals from a previous run or a close by geometry are available this is a good choice. In
my hands, the PAtom guess produces more reliable start orbitals than PModel. However, the best natural orbitals
from a simple correlation calculation like MP2 or a calculation with the MRCI module are usually the best choice.
For example:
#
# First job provides reasonable natural orbitals
#
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 327
* int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
*
Now examine the occupation numbers of the natural orbitals (you will find that in the output of the MP2 part of the
calculation):
A rule of thumb is that orbitals with occupation numbers between 1.98 and 0.02 should be in the active space. Thus,
in the present case we speculate that a 10 electrons in 8 orbitals active space would be appropriate for the CASSCF of
the ground state. Let’s try:
#
# Run a CASSCF calculation for the ground state of H2CO
#
! RHF SVP SV/C SmallPrint
! moread
%moinp "Test-CASSCF-MP2-H2CO.mp2nat"
%casscf nel 10
norb 8
328 6 Detailed Documentation
switchstep nr
switchconv 0.08
end
* int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
*
If we run that calculation it converges (somewhat a little slowly in 8 iterations) and produces the following:
MACRO-ITERATION 8:
--- Inactive Energy E0 = -83.06255267 Eh
E(CAS)= -113.889431430 Eh DE= -0.000017713
N(occ)= 1.99745 1.99621 1.98486 1.97930 1.94281 0.05939 0.02155 0.01843
||g|| = 0.000603382 Max(G)= -0.000306830 Rot=9,0
---- THE CAS-SCF GRADIENT HAS CONVERGED ----
--- FINALIZING ORBITALS ---
---- DOING ONE FINAL ITERATION FOR PRINTING ----
--- Forming Natural Orbitals
--- Canonicalize Internal Space
--- Canonicalize External Space
From which we see that we had two orbitals too much in the active space with occupation numbers very close to two.
This caused the convergence problems even in the second order CASSCF method. You can actually monitor this
during the iterations and if orbitals approach occupation 0 or 2 the calculation is unlikely to converge and might as
well be stopped. You have to look for another active space or better starting orbitals then.
In the present case, we re-run the CASSCF with 6 active electrons in six orbitals. The result is:
MACRO-ITERATION 3:
--- Inactive Energy E0 = -100.73608230 Eh
E(CAS)= -113.885226615 Eh DE= -0.004007907
N(occ)= 1.98130 1.97901 1.94104 0.05956 0.02126 0.01783
||g|| = 0.020517383 Max(G)= -0.007941891 Rot=19,7
--- Increasing StepSize to 0.890 %
--- Scaling the gradient (0.890%)
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 329
MACRO-ITERATION 4:
--- Inactive Energy E0 = -100.55893099 Eh
E(CAS)= -113.885572046 Eh DE= -0.000345431
N(occ)= 1.98161 1.97924 1.94164 0.05889 0.02107 0.01754
||g|| = 0.004400745 Max(G)= -0.002411060 Rot=19,7
--- Reached Maximum Stepsize (1.0)
--- Orbital Update [ NR]
--- Density not converged (0.001). Exact active Fock build
MACRO-ITERATION 5:
--- Inactive Energy E0 = -100.52680306 Eh
E(CAS)= -113.885584053 Eh DE= -0.000012007
N(occ)= 1.98168 1.97931 1.94188 0.05865 0.02101 0.01747
||g|| = 0.001229592 Max(G)= -0.000702657 Rot=19,7
--- Orbital Update [ NR]
--- Density not converged (0.000). Exact active Fock build
MACRO-ITERATION 6:
--- Inactive Energy E0 = -100.52392934 Eh
E(CAS)= -113.885584414 Eh DE= -0.000000361
N(occ)= 1.98169 1.97932 1.94195 0.05857 0.02100 0.01746
||g|| = 0.000375433 Max(G)= -0.000236680 Rot=19,7
---- THE CAS-SCF GRADIENT HAS CONVERGED ----
--- FINALIZING ORBITALS ---
---- DOING ONE FINAL ITERATION FOR PRINTING ----
--- Forming Natural Orbitals
--- Canonicalize Internal Space
--- Canonicalize External Space
MACRO-ITERATION 7:
--- Inactive Energy E0 = -100.52392934 Eh
E(CAS)= -113.885584415 Eh DE= -0.000000001
N(occ)= 1.98172 1.97933 1.94202 0.05851 0.02100 0.01743
||g|| = 0.000375432 Max(G)= 0.000236661 Rot=20,7
--- Number of divergent steps = 1
--------------
CASSCF RESULTS
--------------
You see that after switching to the second-order procedure, the calculation converges very quickly and the occupation
numbers show you that all of these orbitals are actually needed in the active space. The omission of the two orbitals
from the active space came at an increase of the energy by ∼4 mEh which seems to be tolerable. Let’s look what we
have in the active space in figure 6.2.
Thus, we can see that we got a fairly nice result: our calculation has correlated the in-plane oxygen lone pair, the
C-O σ and the C-O π bond. For each strongly occupied bonding orbital, there is an accompanying weakly occupied
antibonding orbital in the active space that is characterized by one more node. In particular, the correlating lone
pair and the C-O σ ∗ orbital would have been hard to find with any other procedure than the one chosen based on
natural orbitals. We have now done it blindly and looked at the orbitals only after the CASSCF — a better approach
is normally to look at the starting orbitals before you enter a potentially expensive CASSCF calculation. If you have
330 6 Detailed Documentation
Figure 6.2: Orbitals of the active space for the CASSCF(6,6) calculation of H2 CO.
bonding/antibonding pairs in the active space plus perhaps the singly-occupied MOs of the system you probably have
chosen a reasonable active space.
We can play the game now somewhat more seriously and optimize the geometry of the molecule using a reasonable
basis set:
%casscf nel 6
norb 6
switchstep nr
end
* int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 331
and get:
---------------------------------------------------------------------------
Redundant Internal Coordinates
Let us compare to MP2 geometries (this job was actually run first):
* int 0 1
C 0 0 0 0.00 0.0 0.00
O 1 0 0 1.20 0.0 0.00
H 1 2 0 1.10 120.0 0.00
H 1 2 3 1.10 120.0 180.00
*
-------------------------------------------------------------------------
Redundant Internal Coordinates
The results are actually extremely similar (better than 1 pm agreement). Compare to RHF:
---------------------------------------------------------------------------
Redundant Internal Coordinates
Thus, one can observe that the correlation brought in by CASSCF or MP2 has an important effect on the C=O
distance (∼4 pm), while the rest of the geometry is not much affected.
The most elementary input information which is always required for CASSCF calculations is the specification of the
number of active electrons and orbitals.
The CASSCF program in ORCA can average of states of several multiplicities. The multiplicities are given as a list.
For each multiplicity the number of roots should be specified:
If the symmetry handling in ORCA is enabled (! UseSym) each multiplicity block must have an irreducible repre-
sentation assigned. Numbers corresponding to the “irrep” within a given symmetry are printed in the output of
ORCA.
Several roots and multiplicities usually imply a state average CASSCF (SA-CASSCF) calculation. In this case, the
user should specify the weight for each block and for each root:
The program will automatically normalize these weights such that the sum of the weights over all roots is unity. If the
weights are not given, the program simply assumes that all weights should be weighted equally. If convergence on an
excited state is desired then the weights[0] array may look like 0.0,0.0,1.0 (this would give orbital optimization
for the third excited state. If several states cross during the orbital optimization this will ultimately cause convergence
problems.
Orbital optimization methods. Since orbital optimization is so difficult, there are several methods available for
optimization.
The different convergers have different strengths. The SuperCI converger is normally quite effective at the beginning
of the optimization process when the process is far from convergence but is slow towards the end. In the default
method the optimization process is started with SuperCI and then switched to DIIS. Even DIIS may sometimes
converge slowly or “trail” towards the end such that real convergence is never reached. The DIIS stores orbital update
vectors from previous macro-iterations and uses them to extrapolate the new step. The KDIIS [256] — based on
perturbation theory — is an approximation to the regular DIIS procedure avoiding redundant rotations. Both DIIS
schemes avoid linear dependencies in the expansion space.
In difficult cases the use of the Newton-Raphson method is highly recommended even if each individual iteration
is considerably more expensive. It is strong towards the end but it would be a waste to start orbital optimization
with the expensive NR method since its radius of quadratic convergence is quite small. The computationally cheaper
alternative is the SOSCF procedure belonging to the family of quasi-Newton updates. The switching is controlled as
follows:
%casscf
There are more refined options available for the augmented Hessian Newton-Raphson step. Below are list of keywords
including their default settings.
%casscf aughess
Solver 0 # Davidson (default)
1 # Pople (pure NR steps)
2 # DIIS
MaxIter 35 # max. no. of CI iters.
MaxDim 35 # max. dim. of Davidson iterations.
MaxDIIS 12 # max. number of DIIS vectors
UseSubMatrixGuess true # diag a submatrix of the Hessian
# as an initial guess
NGuessMat 2064 # size of initial guess matrix (part of
# the Hessian exactly diagonalized)
ExactDiagSwitch 2064 # up to this dimension the Hessian
# is exactly diagonalized (small problems)
PrintLevel 1 # amount of output during AH iterations
Tol 1e-6 # convergence tolerance
UseFloat false # use float values in storage of inte-
# grals and Hessian files
Compress true # use compressed storage
DiagShift 0.0 # shift of the diagonal elements of the
# Hessian
UseDiagPrec true # use the diagonal in updating
SecShift 0.0 # shift the higher roots in the Davidson
# secular equations
UpdateShift 0.5 # shift of the denominator in the
# update of the AH coefficients
end
Convergence is strongly influenced by numerical noise, especially in the final iterations. One source of numerical noise
is the incremental Fock build. Thus, it can help to enforce more frequent full Fock matrix formation.
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 335
If the orbital change in the active space is small, the active Fock matrix in ORCA is approximated using the density
matrix from the previous cycle saving a second Fock matrix build. However, this approximation might also be a source
of numerical instability. The threshold “SwitchDens” can be set to zero to enable the exact build. The program
default starts with a rather large value of value (1e-2) and will reduce this parameter automatically when necessary.
In all of the implemented orbital optimization schemes the step-size correlates with the gradient-norm. A constant
damping factor can be set with the keyword GradScaling. A better choice is to let program reduce the step-size
when the calculation starts to diverge. The respective keyword is DampBadSteps. Once the calculation is going into
a good direction, restrictions to the step-size will be discarded slowly. The amount of damping and relaxation is
controlled with DampingRate and RelaxationRate. Alternatively, setting the keyword DropBadSteps the program
will retry the diverging steps with a smaller step-size. Adding the keyword NROnBadSteps forces the program to do
or redo a few steps using the more expensive Newton-Raphson. If none of the previous options are selected
manually, ORCA will pick the best choice for the given orbital optimization step.
If orbital occupations are close to 0.0 or 2.0, convergence is usually hampered. For the SuperCI, DIIS and KDIIS
approaches introducing a level-shift will damp rotations with the active orbitals. Convergence is also deterioted, when
the orbital energies of the active space overlap with the orbital energies of the internal or external space. If no shift is
specified in the input, ORCA will choose a level-shift to guarantee an energy separation between the subspaces.
There are situations when the active space has been chosen carefully, but the initial gradient is still far off. To keep
the “good” active space, we can suppress all rotation but the inactive-external ones until the gradient-norm is small
enough to continue safely. The threshold can be set with FreezeIE keyword. Once the components of the gradient in
the inactive-external direction have a weight of less than FreezeIE, all constrains are lifted. ORCA by default freezes
336 6 Detailed Documentation
active rotations if the total gradient norm is larger than 1.0 and the active rotations have a weight of less than 5%.
The feature can be turned off setting the threshold to zero.
Similarly, rotations of the almost doubly occupied orbitals with the inactive orbitals can be damped using the thresh
FreezeActive. Rotations of this type are damped as long as all their weight is smaller than FreezeActive. In contrast
to the ShiftDn, it damps just the “troublesome” parts of internal-active rotations. This option applies to all of the
orbital optimization schemes.
If the CASSCF starts from a converged Hartree-Fock calculation, the lowest core orbitals should not change dramatically
by the CASSCF optimization. Setting a the thresh FreezedGrad rotations with orbitals that would have been affected
by the frozencore approximation are damped. Once again, this constrain will be lifted if these orbital rotations have a
weight that is larger than the given FreezeGrad.
In the case of DIIS, the size of the extrapolation factor does matter. Quit often the DIIS extrapolation contains some
near linear dependent vectors leading to numerical instability. Linear dependent vectors are skipped by default using
the parameter DIISThresh.
A good way to speed up the calculations at the expense of “only” obtaining approximate results is to introduce the RI
approximation (best done together with the “jk” auxiliary bases). The RI approximation is invoked by:
Once the calculation has converged, ORCA will do a final macro-iteration, where the orbital are “finalized”. The
default final orbitals are canonical in the internal and external space with respect to state-averaged Fock operator.
The active orbitals are chosen as natural orbitals. Other orbital types can be chosen for the individual subspaces.
#internal space
intorbs canonorbs # canonical
locorbs # localized
unchanged # no changes
#external space
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 337
#active space
actorbs natorbs # natural
canonorbs # canonical
locorbs # localized
unchanged # no changes
dorbs # purify metal d-orbital
forbs # purify metal f-orbital
If the active space is formed by some metal d-orbitals, the default setting might lead to orbitals that are generally
mixed. Then, the d-orbitals can be purified if the actorbs is set to dorbs. The same holds for f-orbitals and the
option forbs. For analysis purposes, a compact printing of the complete wavefunction can be requested.
During the iterations, the active orbitals can be chosen to actively maximize the overlap with active orbitals from the
previous iterations or to form approximate natural orbitals. Maximizing the overlap does not make any restrictions on
the nature of the orbitals. Thus initially localized orbitals will stay localized and ordered, which is sometimes a desired
feature e.g. in the density matrix renormalization group (DMRG) approach, where it is turned on automatically.
However, natural orbitals will improve the stability of the SuperCI procedure. Thus the program default figures out
whats best for the current situation. The flag can be set manually with ActConstrains.
As mentioned earlier, the CASSCF procedure requires a CI-step in every macro-iteration. There are three different
options available to perform this full CI step.
%casscf
CIStep CSFCI # CSF based CI (default)
DMRGCI # density matrix renormalization group instead of the CI
The CI-step default setting is CSF based and is done in the present program by generating a partial “formula tape”
which is read in each CI iteration. The tape may become quite large beyond several hundred thousand CSFs which
limits the applicability of the CASSCF module. Details of CI part can be controlled in a sub-block. Not all of the
options and properties are available for CISteps apart from the default!
338 6 Detailed Documentation
%casscf ci
MaxIter 35 # max. no. of CI iters.
MaxDim -1 # max. dim. of Davidson iterations.
# By default 3, which is 3*NumberRoots
NGuessMat -1 # size of initial guess matrix. Default
# is 2064/NRoots
PrintLevel 1 # amount of output during CI iterations
ETol -1 # default 0.1*ETol in CASSCF
RTol -1 # default 0.1*ETol in CASSCF
end
The CI-step DMRGCI interfaces BLOCK program developed in the group of G. K.-L. Chan [287–290]. A detailed
description of the BLOCK program, its input parameters, general information and examples on the density matrix
renormalization group (DMRG) approach, are available in the section 6.11 of the manual.
The implementation of DMRG in BLOCK is fully spin-adapted. However, spin-densities and related properties are
not available in the current version of the BLOCK code. To start a DMRG calculation add the keyword ”CIStep
DMRGCI” into a regular CASSCF input. ORCA will set default parameters and generate and input for the BLOCK
program. In general, DMRG is not invariant to rotation in the active space. The program by default will run an
automatic ordering procedure (Fiedler). More and refined options can be set in the dmrg sub-block of CASSCF - see
section 6.11 for a complete list of keywords.
%casscf
nel 8
norb 6
mult 3
CIStep DMRGCI
# Detailed settings
dmrg
# more/refined options
...
end
end
It is highly recommended to start the calculation with split-localized orbitals. Any set of starting orbitals (gbw file)
can be localized using the orca loc program. Typing orca loc in the shell will return a small help-file with details on
how to setup an input for the localization. Examples for DMRG including the localization are in the corresponding
section of the manual 6.11. The utility program orca loc is documented in section 6.24.5. Split-localization refers to
an independent localization of the internal and virtual part of the desired active orbitals.
NOTE:
• Let us stress again: it is strongly recommended to first LOOK at your orbitals and make sure that the ones
that will enter the active space are really the ones that you want to be in the active space! Many problems can
be solved by thinking about the desired physical contents of the reference space before starting a CASSCF. A
poor choice of orbitals results in poor convergence or poor accuracy of the results! Choosing the active orbitals
always requires chemical and physical insight into the molecules that you are studying!
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 339
• Please try the program with default settings before playing with the more advanced options. If you encounter
convergence problems, have a look into your output, read the warning and see how the gradient and energy
evolves. Increasing MaxIter will not help in many cases.
The CASSCF program is able to calculate UV transition, CD spectra, SOC, Zeeman splittings, g-tensors, and MCD
spectra. The techniques used to calculate SOC, and Zeeman splittings are identical to those implemented into the
MRCI program. Input and keywords mimic the ones in the MRCI module. As an example, the input file to calculated
g-values of CO+ is listed below:
Note, that Spin-Spin couplings are momentarily not accessible via the CASSCF module. However, it is possible to run
CAS-CI type calculations in MRCI. Converged CASSCF orbitals can be read setting the following flags
%mrci
...
TPre 0.0
citype mrci
newblock 2 *
excitations none
340 6 Detailed Documentation
soc
DoSC true
...
end
end
* xyz 1 2
C 0 0 0.0
O 0 0 2.3504
*
A common way to introduce dynamical correlation for the property computation, is to replace the energies entering
the quasi-degenerate perturbation theory. If the NEVPT2 energy correction is computed in CASSCF, there will be
additional printings where CASSCF energies are replaced by the more accurate NEVPT2 values. Alternatively, these
diagonal energies can be taken from the input file similarly how it is described for the MRCI module. A more detailed
documentation is presented in the MRCI property section.
The fully variational spin-orbit coupled CASSCF approach allows the user to account for spin-orbit coupling effects
variationally. In this method the CASSCF wavefunction is presented as a linear combination of several parts of
pre-selected multiplicities S and all possible Ms = S, S − 1, . . . , −S.
Each of the building block wavefucntions ΨSMS is itself represented by a sum of CSFs
NX
CSF
ΨSMS = ClSMS ΦSM
l
S
(6.162)
l
The presented approach optimizes the CI coefficients and MO coefficients of a sum of the Born-Oppenheimer (BO)
Hamiltonian and the spin-orbit mean-field Hamiltonian (SOMF) that are given by
The procedure employs the intermediate coupling scheme to account for SOC. This allows to employ complex-valued
CI coefficients, but real-valued molecular orbital coefficients.
%casscf
nel 3 # number of electrons
norb 5 # number of orbitals
nroots 3 # number of roots for the guess calculation
mult 2 # multiplicities
etol 1e-9
gtol 1e-05
maxiter 100
rel
dosoc true # accounts for the SOC interaction
soctype 1 # runs a variational calculation
0 # corresponds to the QDPT case
orbstep superci # SuperCI algorithm for convergence
diis # DIIS algorithm for convergence
qn # quasi-Newton algorithm for
# convergence
switchstep diis
gradscaling 0.1 # gradient scaling factor
maxiter 100 # number of iteration
0 # corresponds to the diagonalization
# of the BO and SOC operators in the
# basis of CSFs
printlevel 2
nroots 6 # number of relativistic roots
etol 1e-9
gtol 1e-3
socints 0 # SOC integrals are calculated once
# with guess MOs and used during
# every CASSCF iteration
1 # SOC integrals are re-calculated
# on every CASSCF calculation
-1 # SOC integrals are taken from files
# input_name.mrci.sox.tmp etc
gtensor true # calculate g-tensor
usekramerssym true # use Kramers symmetry for the CI
# step
Weights = 0.166667, 0.166667, 0.166667, 0.166667, 0.166667, 0.166667
# weights for the state-averaging
ci
rtol 5e-14 # residual tolerance for the Davidson
# procedure
maxdim 18 # maximal dimension of space
342 6 Detailed Documentation
%rel
soctype 2 # reads atomic densities from files
# 0.gbw for the atom 0, 1.gbw for the
# atom 1 etc.
4 # constructs atomic densities
# automatically
picturechange true # include picture change effects for
# for the SOC and the Zeeman operator
end
* xyz 0 2
Hg 0 0 0
H 0 0 1.766
*
Here, the non-relativistic (or scalar relativistic, real-valued) CI vectors are calculated first. They are used as guess
vectors for the following variational calculation. The relativistic procedure starts with the message
INIT CI
SOLVE CI
ORBITAL-IMPROVEMENT-STEP:
Algorithm ... DIIS
First, the variational procedure diagonalizes the relativistic Hamiltonian in the basis of CSFs. This corresponds, in
fact, to the optimization of the CI coefficients using the Davidson procedure and guess MOs, and denoted in the
output as ZERO MACRO-ITERATION
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 343
ZERO MACRO-ITERATION
--------------------------------
COMPLEX DAVIDSON-DIAGONALIZATION
--------------------------------
At the end of the Davidson procedure the resulting energies and roots contributions are printed:
---------------------------------------------# relativistic
RELATIVISTIC CASSCF STATES # states are
---------------------------------------------# printed
ROOT 0: E= -19596.6327958833 Eh
( 0.05898014, -0.01185007) 31
S = 0.5 MS = -0.5
( 0.09374074, 0.34621370) 0
( -0.00586884, -0.05405190) 1
( -0.05405190, 0.00586884) 2
( 0.00880151, 0.03250671) 3
( 0.00309005, 0.01141252) 4
( 0.00871013, 0.03216921) 9
( -0.00830680, -0.03067959) 10
( -0.00472754, -0.01746029) 11
( -0.00472754, -0.01746029) 16
( -0.00601817, -0.02222696) 22
( -0.00410484, -0.01516045) 23
( -0.00410484, -0.01516045) 28
( -0.00622054, -0.02297440) 31
Next, the properties specified in the input are calculated. Next, the obtained complex CI coefficients are used to
develop the orbital gradient as it is described in detail in the literature [291]. The orbital gradient is used for optimizing
real-valued MOs.
MACRO-ITERATION 1:
--------------------------------
COMPLEX DAVIDSON-DIAGONALIZATION
--------------------------------
CI-PROBLEM SOLVED
6.9 The Complete Active Space Self-Consistent Field (CASSCF) Module 345
SOC Part:
||g||= 0.024945604 Max(G)= -0.012476958 Rot=111,43
||g||= 0.000827087 Max(G)= -0.000742821 Rot=111,43
---- THE CAS-SCF GRADIENT HAS CONVERGED ---
the complex CI vectors are printed again using the same format as indicated above. The program is able to calculate
UV transitions, SOC splittings, and g-tensors for doublet states. The options are similar to those used for the CASSCF
used to calculate SOC splittings are identical to those implemented into the MRCI program. The output for the
calculated g-tensor of HgH is printed in the same format as produced the by MRCI program.
-------------------
KRAMERS PAIR 1 :
-------------------
Matrix elements Re<1|S|1> -0.441689 -0.391275 0.793281
Matrix elements Re<1|S|2> 0.272168 -0.908540 -0.292499
Matrix elements Im<1|S|2> -0.846822 -0.087922 -0.507771
Matrix elements Re<1|L|1> 0.039367 0.034874 0.005531
Matrix elements Re<1|L|2> -0.024258 0.080977 -0.002039
Matrix elements Im<1|L|2> 0.075476 0.007836 -0.003540
-------------------
ELECTRONIC G-MATRIX
-------------------
raw-matrix g-matrix:
0.496395 -1.657046 -0.589760
1.544481 0.160356 1.023809
-0.805576 -0.713629 1.599477
-------------------
ELECTRONIC gTg-MATRIX
-------------------
ORCA has implemented the strongly contracted NEVPT2 [292–294] and its quasi-degenerate formulation [295]. It
belongs to the family of internally contracted multireference perturbation theories. NEVPT2 applies to CASSCF
type MCSCF wavefunctions and thus is similar to the CASPT2 [296] and MSCASPT2 [297] approach. It has many
desirable properties - among them:
• It is intruder state free due to the choice of the Dyall Hamiltonian [298] as the 0’th order Hamiltonian.
• It is “strongly contracted”. Perturber functions are orthogonal and hence no time is wasted on orthogonal-
ization issues.
• The 0’th order Hamiltonian is diagonal in the perturber space. Therefore no linear equation system needs
to be solved.
• It is strictly size consistent. The total energy of two non-interacting systems is equal to the sum of two
isolated systems.
The two computationally most demanding steps of the NEVPT2 calculation are the initial integral transformation
involving the two-external labels and the formation and contraction of the fourth order density matrix (D4). Efficient
approximations to both issues are available in ORCA.
RI Approximation
Setting the RI approximation on CASSCF level, will set the RI options for NEVPT2 respectively. Alternatively
setting ! RI-NEVPT2 as simple input does the job.
With the default settings for RI, the three index integrals are computed are computed and stored. Three index integral
with two internal labels are kept in main memory. The two-electron integrals are assembled on the fly. Other options
are available with nev ristep, they differ in the way the integrals are stored or assembled. If only limited memory is
available, the recommend option is 1 storing all the three integrals on disk.
%casscf
...
nevpt2 true
nev_ristep -1 # no RI for the integral transformation
0 # assembles and stores the two-electron integrals (ia|jb) using RI
1 # stores the three index integrals (ij|v) and (ia|v) as containers on disk
# (ia|jb) integrals are assembled on the fly
2 # as option 1, but (ij|v) are kept in memory (_MC_INCORE)
3 # default: as option 2, but (ij|v) are kept as matrix array
end
6.10 N-Electron Valence State Pertubation Theory 347
Additional speedups can be obtained if the Fock operator formation is approximated using the ! RIJCOSX or ! RIJK
techniques.
For CASSCF spaces of [8, 8] and larger the formation of the fourth order density matrix becomes more and more
the time dominating step of the NEVPT2 calculation. To improve this situation, ORCA truncates the CASSCF
wavefunction during the formation of the fourth and third order density matrices. Only configurations with a weight
larger than a given parameter nev tpre are taken into account. The same approximation is available for the third
order density matrix controlling nev d3tpre. Both of the parameters can be adjusted within the %casscf block.
%casscf
...
nevpt2 true
nev_tpre 1e-10 #default
nev_d3tpre 1e-14 #default
end
These approximations naturally can affect the “configuration RI” as well. In this context, it should be noted that a
configuration corresponds to a set of configuration state functions (CSF) with identical orbital occupation. For each
state the dimension of the CI and and RI space is printed.
The default values usually produce errors of less than 1 mEh. However, the error introduced by the nev tpre is system
dependent and should be double checked. The exact NEVPT2 energy is recovered with the parameters set to zero.
Storage of the fourth order density matrix can easily reach several gigabytes and thus cannot be kept in core memory
for a large active space. We have implemented a few strategies for the computation of fourth order density matrix:
%casscf
...
nev_d4step disk # dumped on disk
fly # on the fly (default)
core # in core memory
lfly # less memory demanding
# compared to fly, but substantially slower!
end
State-averaged NEVPT2
In the definition of the Dyall Hamiltonian [298] the CASSCF orbitals are chosen to diagonalize the Fock operator
(pseudo-canonicalized). Therefore in a state-averaged CASSCF the NEVPT2 procedure involves the construction and
diagonalization of the “state-specific” Fock operators and is thus resulting in a unique set of orbitals for each state.
This becomes quickly inefficient for large number of states or large molecular systems since each orbital set implies an
integral-transformation. This is the default setting for NEVPT2 and is printed in the output
NEVPT2-SETTINGS:
Orbitals ... canonical for each state
Other orbital options can be set using the keyword nev canonstep.
%casscf
...
nev_canonstep 0 # state-averaged orbitals and specific orbital energies
1 # canonical for each state
2 # state-averaged orbitals and orbital energies
3 # 1-step orbital relaxation
# and canonical for each state (partially relaxed)
end
The final orbitals of the state-averaged CASSCF diagonalize the state-averaged Fock operator. Large computational
savings can be made if these orbitals are employed for all of the states. nev canonstep 0 chooses Orbital energies as
diagonal elements of the state-specific Fock operators. In previous version of ORCA, this has been the default-setting.
These options work best if the averaged states are similar in nature.
nev canonstep 2 is even more approximate and employs orbital energies from the state-averaged calculation. Thus
there is no contribution to excitation energies from the perturber class Vijab at this level of approximation.
If the states under consideration are substantially different, these approximations will be of poor quality and should
be turned off. Better results can be achieved, if the state-averaged orbitals are partially relaxed for each state
before the actual NEVPT2 calculation. [299] Often it is not possible to optimize the excited states separately. Thus
nev canonstep 3 will try a single steepest descent step for each state before running the actual NEVPT2 calculation
with canonicalized orbitals. Optionally, instead of a steepest descent using an approximate diagonal Hessian, a single
Newton-Raphson step can be made.
6.10 N-Electron Valence State Pertubation Theory 349
Despite a converged state-averaged calculation, the gradient for the individual states can be surprisingly large. As a
consequence, the orbital relaxation might fail as both methods might be outside their convergence radius. ORCA will
retry the relaxation with an increased damping. If the orbital update still fails, the program will stick with the initial
orbitals. Setting an overall damping manually, might help the relaxation procedure.
Quasi-Degenerate NEVPT2
NEVPT2 as it is presented in the previous subsections follows the recipe of ”diagonalize and perturb”. The zero’th
order wavefunction is determined by the diagonalization of the CAS-CI matrix. The space spanned by the CAS-CI
vectors is often referred to as model-space. The subsequent perturbation theory is constructed based on the assumption
that the states under consideration are well described within the model space. Consequently, the first order correction
(1)
to the wavefunction ΨI does not affect the composition of the reference state |I >. Corrections to the wavefunction
and energy arise from the interaction of the reference state with the functions |k > of the contributing first order
interacting space
(1)
X
ΨI = Ck |k > (6.164)
k
(2)
X < I|H|k >< k|H|I >
EI = (0)
. (6.165)
k EI − Ek
This is problematic, when the interaction/mixing of states are falsely described at the CASSCF level. A typical
example is the dissociation of Lithium-Fluoride.
!def2-tzvp nevpt2
%casscf
nel 2
norb 2 #Li(2s), F(2pz)
mult 1
nroots 2
end
%paras
r = 3,7,200
end
*xyz 0 1
Li 0 0 0
F 0 0 r
*
350 6 Detailed Documentation
Here, the ground and first excited state of Σ+ should not cross. However, at the NEVPT2 level, an erratic double
crossing is observed instead.
-106,99
-107
-107,01
Emergy [Eh]
-107,02
-107,03
QDNEVPT2
-107,04
NEVPT2
-107,05
-107,06
3 3,5 4 4,5 5 5,5 6 6,5 7
Li-F [Angstrom]
Figure 6.3: NEVPT2 and QDNEVPT2 Li-F dissociation curves of the ground and first excited
states for a CAS(2,2) reference
A re-organizing of the reference states can be introduced in the framework of quasi-degenerate perturbation theory. In
practice, an eff. Hamiltonian is constructed allowing ”off-diagonal” corrections to the second order energy
(0)
X < I|H|k >< k|H|J >
HIJ = δIJ EI + (0)
(6.166)
k EI − Ek
Diagonalization of this eff. Hamiltonian yields improved energies and rotation matrix (right eigenvectors) that
introduces the desired re-mixing of the reference states. The quasi-degenerate extension to NEVPT2 [295] can be
switched on with the keyword nev qdtype .
%casscf
...
nevpt2 true
nev_qdtype 0 # no QDPT2
1 # non-Hermetian eff. Hamiltonian
2 # Hermitian eff. Hamiltonian (Cloizeaux)
end
6.10 N-Electron Valence State Pertubation Theory 351
ORCA will print the eff. Hamiltonian matrix and its eigenvectors at the end of the calculation.
===============================================================
QD-NEVPT2 Results
===============================================================
*********************
MULT 1,
*********************
Right Eigenvectors
0 1
0 -0.987232 0.170171
1 -0.159292 -0.985414
--------------------------
ROOT = 0
--------------------------
Total Energy Correction : dE = -0.25309172934720
Zero Order Energy : E0 = -106.82353108218946
Total Energy (E0+dE) : E = -107.07662281153667
--------------------------
ROOT = 1
--------------------------
Total Energy Correction : dE = -0.23103459727281
Zero Order Energy : E0 = -106.77074682157986
Total Energy (E0+dE) : E = -107.00178141885267
By construction the Hamiltonian is non-Hermitian. If the matrix is ill-conditioned, the eigenvalues can be imaginary.
ORCA will print a warning in this case. The energy denominator in the quasi-degenerate NEVPT2 is very sensitive
to approximations. The canoncalization options with averaged orbitals and orbitals energies (nev canonstep 0/2)
have the tendency to lessen the energy-denominator. To avoid artifacts, the calculation is restricted to nev canonstep
1 - each state has its own orbitals. For the computation of properties e.g. expectation values, the non-Hermitian
formulation requires left- and right eigenvectors. A Hermitian variant [300] with a single set of eigenvectors (”right”)
can be constructed. The transformation will not change the energies but affects the mixing of states. Dispite the
simplification, the recommended option should be the non-Hermitian variant!
If properties are requested within the casscf module i.e. zero-field splitting, there will be an additional printing with
the ”improved” CI vectors and energies. For technical reasons, properties that are not computed in CASSCF such as
the Moessbauer parameters do not benefit from the QD-NEVPT2 correction.
352 6 Detailed Documentation
BLOCK is an implementation of the density matrix renormalization group (DMRG) algorithm from the Chan group [287–
290, 301].
The DMRG is a variational wavefunction method. It can be viewed as (i) an efficient method for strong correlation in
large complete active spaces, (ii) a brute force method to systematically approach FCI for a large number of electrons
and orbitals, (iii) a polynomial cost route to exact correlation in pseudo-one-dimensional molecules, such as chains
and rings.
Although the algorithm is somewhat complicated compared to many quantum chemistry methods, significant effort
has been devoted in BLOCK to ensure that it can be run in a simple black-box fashion. In most cases, only a single
keyword needs to be specified.
To provide an idea of how the DMRG can be used, here are some examples. The timings will vary depending on your
computational setup, but the following are calculations that run in a few hours to a day, on a single 12-core Xeon
Westmere cluster node:
• Complete active space (CAS) CI calculations for active spaces with up to 30 electrons in 30 active orbitals,
targetting up to 1-10 states, e.g. Jacobsen’s catalyst in a 32 electron, 25 orbital active space,
• One-dimensional chain molecules, with “widths” of up to 4 orbitals, and about 100 orbitals in total, e.g. the
π-active space of a 4×25 graphene nanoribbon,
• FCI benchmark solutions in molecules with fewer than 20 electrons, and up to 100 orbitals, e.g. C2 in a
cc-pVTZ basis, D2h symmetry (12 electrons in 60 orbitals),
The following are calculations which are possible with the BLOCK code, but which are challenging, and require large
memory (e.g. up to 8 Gb per core) and computational time (e.g. from a day to more than a week on up to 6 12-core
Xeon Westmere nodes),
• Complete active space (CAS) CI calculations in active spaces with around 40 electrons in 40 active orbitals,
targetting a few states, for example, an Fe(II)-porphine (40 electrons in 38 orbitals) with an active space of Fe
3d, 4d and all porphine π and σ donor orbitals, or an Fe 3d, S 3p active space calculation for [Fe4 S4 (SCH3 )4 ]2− ,
• One-dimensional chain molecules, with “widths” of up to 6 orbitals, and about 100 total orbitals,
• Champion FCI benchmark solutions in small molecules, such as butadiene in a cc-pVDZ basis (22 electrons in
82 orbitals),
If any these calculations interest you, then you might want to try a DMRG calculation with BLOCK!
6.11 Density Matrix Renormalization Group 353
Note that the standalone version of BLOCK may provide more capabilities than are available through the external
interface. See the BLOCK website for details [302].
We would appreciate if you cite the following papers in publications resulting from the use of BLOCK :
• D. Ghosh, J. Hachmann, T. Yanai, and G. K.-L. Chan, J. Chem. Phys., 128, 144117 (2008),
• G. K-.L. Chan and S. Sharma, Ann. Rev. Phys. Chem. 62, 465 (2011),
In addition, useful DMRG references relevant to quantum chemistry can be found in the review above by Chan and
Sharma.
Within ORCA, the BLOCK program is accessed as part of the CASSCF module. BLOCK can be run in two modes: CASCI
mode (no orbital optimization) or CASSCF mode. To enable CASCI mode, set maxiter 1.
%casscf
maxiter 1 # remove if doing CASSCF
CIStep DMRG
...
end
For small molecule CASCI it may be possible to correlate all orbitals. In general, similar to a standard CASSCF
calculation, it is necessary to select a sensible active space to correlate. (See Section 6.11.4.1 on CASSCF). This is the
responsibility of the user.
354 6 Detailed Documentation
Once the orbitals to correlate have been chosen, and the wavefunction symmetries and quantum numbers are specified,
the accuracy of the DMRG calculation is governed by two parameters: the maximum number of renormalized states
M ; and, the order and localization of the orbitals.
The most important parameter in the DMRG calculation is M , the number of renormalized states. This defines the
maximum size of the wave-function expansion, which is O(M 2 ) in length in the renormalized basis. As M is increased,
the DMRG energy converges to the exact (FCI or CASCI) limit.
The DMRG maps orbitals onto a 1D lattice, thus the best results are achieved if strongly interacting orbitals are
placed next to each other. For this reason, the DMRG energy is not generally invariant to orbital rotations within the
active space, and orbital rotation and ordering can improve the DMRG energy for a given M . As M is increased, the
DMRG energy becomes less and less sensitive to the orbital ordering and localization.
To minimize the number of optimization steps, it is often advantageous to perform DMRG calculations at small M ,
then increase M to the final maximum value. This sequence of optimizations is governed by the sweep schedule, which
specifies how many optimization steps (sweeps) to perform at each intermediate value of M .
The above may seem to make running a DMRG calculation more complicated than a usual quantum chemistry
calculation, however, BLOCK provides a set of default settings which eliminate the need to specify the above parameters
by hand. We highly recommend that you first learn to use the BLOCK program with these default settings. In the
default mode, the orbitals are ordered automatically (Fiedler vector method [303–306]) and a default sweep schedule
is set.
An example of a default CASCI calculation on the C2 molecule correlating all electrons in a VTZ basis, is given
here:
!cc-pvtz pal4
%MaxCore 1600000
%casscf nel 8
norb 58
nroots 1
mult 1
maxiter 1
CIStep DMRGCI
DMRG
maxM 5000
end
end
* xyz 0 1
C 0 0 -0.621265
C 0 0 0.621265
*
Once you are familiar with the default mode, we recommend exploring the localization of orbitals. In general, DMRG
benefits from the use of localized orbitals, and these should be used unless the high-symmetry of the molecule (e.g.,
6.11 Density Matrix Renormalization Group 355
D2h symmetry) provides compensating computational benefits. We recommend using “split-localized” orbitals, which
correspond to localizing the occupied and virtual orbitals separately. An example of a split-localized default DMRG
calculation on the porphine molecule, correlating the full π-space (26 electrons in 24 orbitals), in a cc-pVDZ basis is
given in Sec. 6.11.5.
For a given maxM, it can take a long time to tightly converge DMRG calculations (e.g. to the default 1e-9 tolerance).
To decrease computation time, you may wish to loosen the default tight sweep tolerance or control the maximum
number of sweep iterations with the commands sweep tol and maxIter.
Orbital optimization (mixing the external/internal space with the active space, not to be confused with orbital rotation
and ordering in the active space) in DMRG calculation can be performed by using the BLOCK program as the “CIStep”
within a CASSCF calculation, as described above. For the moment, spin-densities and related properties are not
available for this CIStep.
During the optimization iterations it is important that the active orbitals maintain their overlap and ordering with
previous iterations. This is done using actConstrains. This flag is set by default.
%casscf
ActConstrains 1 # maintain shape and ordering of active orbitals
...
end
In general, performing a DMRG calculation with orbital optimization is quite expensive. Therefore, it is often best to
carry out the orbital optimization using a small value of maxM (enabled by the default parameters), and to carry out a
final single-point calculation using a larger value of maxM.
There may be times when one wants finer control of the DMRG calculation. All keywords are shown in the complete
set of BLOCK options 6.11.4.4 below. The startM command allows to change the starting number of states in DMRG
calculations. It is also possible to specify the entire sweep schedule manually. A sweep schedule example follows:
%casscf
...
dmrg
MaxIter 14
TwoDot_to_oneDot 12
NSchedule 3
sche_iteration 0, 4, 8
sche_M 50, 100, 500
sche_sweeptol 1e-4, 1e-6, 1e-9
356 6 Detailed Documentation
end
end
• Sche iteration, details the sweep number at which to change the parameters of the calculation. Notice count
begins at 0;
• Twodot to onedot, specifies the sweep at which the switch is made from a twodot to a onedot algorithm. The
recommended choice is to start with twodot algorithm and then switch to onedot algorithm a few sweeps after
the maximum M has been reached. To do a calculation entirely with the twodot or the onedot algorithm,
replace the twodot to onedot line with twodot 1 or onedot 1.
The default schedule corresponds to the following: starting from a given startM (where the default is 500 and 8
sweeps), increase to a value of 1000 (8 sweeps) and increment by 1000 every 4 iterations until maxM is reached. The
algorithm switches from twodot to onedot two sweeps after the maximum M has been reached.
For better control of the orbital ordering, we also provide a genetic algorithm minimization method of a weighted
exchange matrix. The genetic algorithm usually provides a superior orbital ordering to the default ordering, but can
itself take some time to run for large numbers of orbitals. The genetic algorithm can be enabled by
%casscf
...
DMRG
auto_ordering GAOPT
end
end
6.11.4.3 Troubleshooting
The two most common problems with DMRG calculations are that (i) convergence with maxM is slower than desired,
or (ii) the DMRG sweeps get stuck in a local minimum. (i) is governed by the orbital ordering / choice of orbitals. To
improve convergence, turn on the genetic algorithm orbital ordering.
If you suspect (ii) is occurring, the simplest thing to do is to increase the starting number of states with the startM
(e.g. from 500 to 1000 states). Local minima can also sometimes be avoided by increasing the noise in the DMRG
schedule, e.g. by a factor of 10. To check that you are stuck in a local minimum, you can carry out a DMRG
extrapolation (see extended Manual in the BLOCK website).
Note that the warmup (initial) sweep in DMRG currently assumes that the input orbitals supplied from ORCA are
ordered by their energies. While the canonical orbitals are supplied in this order by default, this is not the case if the
user has performed an orbital localization, unless the user manually rearranges the orbitals. If the input orbitals are
not in their energy order, then the initial DMRG sweep may produce an energy higher than the HF energy (due to a
wrong initial guess) even if the input orbitals are ultimately canonical or split-localized canonical in nature. While the
DMRG calculation often recovers from this guess in later sweeps, it can occasionally stay stuck. This will be fixed
in the next release. The current fix is to make sure the input orbitals are ordered by energy or to increase the
starting number of states through the startM command.
%casscf
...
dmrg
end
end
We provide a step-by-step basis on localizing the π-orbitals of the porphine molecules and running a CASSCF-DMRG
calculation on this system. It will be important to obtain an initial set of orbitals, rotate the orbitals which are going
to be localized, localize them, and finally run the CASSCF calculation. We will abbreviate the coordinates as [. . . ]
after showing the coordinates in the first input file, but please note they always need to be included.
2. We then swap orbitals with π-character so they are adjacent to each other in the active space. (π orbitals are
identified by looking at the MO coefficients). When they are adjacent in the active space, they can be easily
localized in the next step.
#To rotate the orbitals (so that we can localize them in the next step)
!cc-pvdz moread noiter
%moinp "porphine.gbw"
%scf
rotate
70, 72, 90
65, 71, 90
61, 70, 90
59, 69, 90
56, 68, 90
88, 84, 90
92, 85, 90
93, 86, 90
96, 87, 90
99, 88, 90
102, 89, 90
103, 90, 90
360 6 Detailed Documentation
104, 91, 90
end
end
* xyz 0 1
[...]
*
3. After rotating the orbitals, we localize the 13 occupied π-orbitals. This is performed using the orca loc code.
The input file follows.
porphine_rot.gbw
porphine_loc.gbw
0
68
80
120
1e-3
0.9
0.9
1
4. After localizing the occuppied orbitals, we localize the 11 virtual π-orbitals using the orca loc code once again.
The input file follows.
porphine_loc.gbw
porphine_loc2.gbw
0
81
91
120
1e-3
0.9
0.9
1
5. After these steps are complete, we run a CASSCF-DMRG calculation. The standard input file is shown below
!cc-pvdz moread pal4
%moinp "porphine_loc2.gbw"
%casscf nel 26
norb 24
nroots 1
CIStep DMRGCI
end
* xyz 0 1
6.12 Relativistic Options 361
[...]
*
The relativistic methods in ORCA are implemented in a fairly straightforward way but do require some caution from
the user. The options are controlled through a block called REL which features the following variables:
%rel
#----------------------------------------------------
# Basic scalar relativistic method
#----------------------------------------------------
method DKH # Douglas-Kroll-Hess
ZORA # ZORA (numerical integration)
IORA # IORA (numerical integration)
IORAmm # IORA with van Wuellens
# modified metric
ZORA_RI # ZORA (RI approximation)
IORA_RI # IORA (RI approximation)
IORAmm_RI # IORA (RI approximation)
# and modified metric
NESC # NESC (not functional)
# ---------------------------------------------------
# Choice of the model potential for ALL methods
# ---------------------------------------------------
ModelPot VeN, VC, VXa, VLDA
# Flags for terms in the model potential
# =0 not included =1 included
# default is 1,1,1,1 for ZORA and IORA and
# 1,0,0,0 for DKH
# VeN = nuclear attraction term
# VC = model Coulomb potential
# VXa = model Xalpha potential
# VLDA= VWN-5 local correlation model pot.
Xalpha 0.7 # default value for the X-Alpha potential
# --------------------------------------------------
# This variable determines the type of fitted atomic
# density that enters the model potential
# --------------------------------------------------
ModelDens rhoDKH # DKH4 model densities (default)
rhoZORA # ZORA model densities
rhoHF # Hartree-Fock model densities
362 6 Detailed Documentation
# --------------------------------------------------
# This flag controls whether only one center terms
# retained. If this is true an approximate treat-
# ment of relativistic effects result but geom-
# try optimizations CAN BE PERFORMED WITH ALL
# METHODS AND MODEL POTENTIAL
# In addition one gets NO gauge noninvariance
# errors in ZORA or IORA
# --------------------------------------------------
OneCenter false # default value
# --------------------------------------------------
# Specify the speed of light used in relativistic
# calculations
# --------------------------------------------------
C 137.0359895 # speed of light used
# synonyms are VELIT, VELOCITY
# --------------------------------------------------
# Picture change for properties
# ---------------------------------------------------
PictureChange true # default is false
# ---------------------------------------------------
# Order of DKH treatment
# ---------------------------------------------------
order 1 # first-order DKH Hamiltonian
2 # second-order DKH Hamiltonian
# ---------------------------------------------------
# SPIN ORBIT COUPLING OPERATORS
# ---------------------------------------------------
SOCType 0 # none
1 # effective nuclear charge
3 # mean-field/effective potential (default)
# ---------------------------------------------------
# Flags for construction of potential.
# Operative only for SOCType 3.
# ---------------------------------------------------
SOCFlags 1,2,3,0 # (default)
# Flag 1 = 0 - do not include 1-electron terms
# = 1 - do include 1-electron terms
# Flag 2 = 0 - do not include Coulomb terms
# = 1 - compute Coulomb terms fully numeric
# = 2 - compute Coulomb term seminumeric
# = 3 - compute Coulomb term with RI approx
# = 4 - compute Coulomb term exactly
# Flag 3 = 0 - do not include exchange terms
# = 1 - do include local X-alpha exchange
6.12 Relativistic Options 363
In the relativistic domain, calculations are based on the one-electron, stationary Dirac equation in atomic units (rest
mass subtracted)
hD Ψ = (β − 1) c2 + c~
αp~ + V Ψ = EΨ. (6.167)
The spinor Ψ can be decomposed in its so-called large and small components
!
ΨL
Ψ= (6.168)
ΨS
These are obviously coupled through the Dirac equation. More precisely, upon solving for ΨS , the following relation is
obtained:
−1
1 E−V
ΨS = 1+ ~σ p
~ΨL = RΨL (6.169)
2c 2c2
!
Ω+ −R+ Ω 1 1
U= with Ω+ = √ , Ω− = √ ,
RΩ+ Ω− 1+R+ R 1+RR+
!
+ h̃++ 0
U hD U = (6.170)
0 h̃−−
The (electronic) large component thus has to satisfy the following relation
The approximate relativistic schemes implemented in ORCA use different methods to substitute the exact relation
6.152 with approximate ones.
Two approximation schemes are available in ORCA: the regular approximation and the Douglas-Kroll-Hess (DKH)
approach.
6.12 Relativistic Options 365
c
R= ~σ p
~. (6.172)
2c2 − V
!
1 −R+
UZORA = (6.173)
R 1
1
h̃ZORA
++ = V + c~σ p
~ c~σ p
~. (6.174)
2c2 − V
!
Ω+ 0
UIORA = UZORA (6.175)
0 Ω−
and
1
h̃IORA
++ = Ω + V + c~σ p
~ c~
σ p
~ Ω+ (6.176)
2c2 − V
is the corresponding Hamiltonian. Note that despite the name – infinite-order regular approximation – this is still not
exact.
In ORCA, the spin-free variant of ZORA and IORA are implemented. These are obtained from those above through
the replacement
1 1
~σ p
~ ~→p
~σ p ~ 2 p
~. (6.177)
2c2 − V 2c − V
The regular Hamiltonians contain only part of the Darwin term and no mass-velocity term. A problem with relation
6.157 is that due to the non-linear dependence of the resulting regular Hamiltonians on V, a change in V that in the
Dirac and Schrödinger equations will result in a change of energy
E → E + const
does not so in the regular approximation. Several attempts have been made to circumvent this problem. The scaled
ZORA variant is one such procedure. Another one is given through the introduction of model potentials replacing V.
Both approaches are available in ORCA.
366 6 Detailed Documentation
This variant goes back to van Lenthe et al. [307]. The central observation is that the Hamiltonian
hZORA
hscaledZORA =
(6.178)
~ 2 1 2 c~σ p
1 + ΨL c~σ p ~ ΨL
(2c −V )
produces constant energy-shifts E → E + const when the potential V is changed by a constant – for hydrogenic
ions. For many-electron systems, the scaled-ZORA Hamiltonian still does not yield simple, constant energy shift
for V → V + const. But it produces the exact Dirac energy for hydrogen-like atoms and performs better than the
first-order regular approximation for atomic ionization energies.
The scalar relativistic ZORA self-consistent field equation is in our implementation (in atomic units):
c2
p p + Veff ψi = εi ψi (6.179)
2c2 − Ṽmodel
where c is the speed of light. It looks like the normal nonrelativistic Kohn–Sham equation with the KS potential
Veff :
ρ (r0 )
Z
X ZA
Veff (r) = − + dr0 + Vxc [ρ] (6.180)
A
|r − RA | |r − r0 |
(ZA is the charge of nucleus A and RA is its position; ρ(r) is the total electron density and Vxc [ρ] the exchange-
correlation potential – the functional derivative of the exchange-correlation energy with respect to the density). The
kinetic energy operator T = − 12 ∇2 of the nonrelativistic treatment is simply replaced by the ZORA kinetic energy
operator:
c2
T ZORA = p p (6.181)
2c2 − Ṽmodel
Clearly, in the regions where the potential is small compared to c2 , this operator reduces to the nonrelativistic kinetic
energy. Ṽmodel could be the actual KS potential. However, this would require to solve the ZORA equations in a
special way which demands recalculation of the kinetic energy in every SCF cycle. This becomes expensive and is also
undesirable since the ZORA method is not gauge invariant and one obtains fairly large errors from such a procedure
unless special precaution is taken. Van Wüllen [82] has therefore argued that it is a reasonable approximation to
replace the actual KS potential with a model potential Ṽmodel which is constructed as follows:
ρmodel (r0 ) 0
Z
X ZA LDA
h i
Ṽmodel = − + 0
dr + Vxc ρmodel (6.182)
A
|r − RA | |r − r |
The model density is constructed as a sum over spherically symmetric (neutral) atomic densities:
X
ρmodel (r) = ρA (r) (6.183)
A
6.12 Relativistic Options 367
Thus, this density neither has the correct number of electrons nor any spin polarization. Yet, in the regions close to
the nucleus, where the relativistic effects matter, it is a reasonable approximation. The atomic density is expanded in
a sum of s-type gaussian functions like:
X
ρA (r) = di exp −αi |r − RA |2
(6.184)
i
The fit coefficients were determined in three different ways by near basis set limit scalar relativistic atomic HF
calculations and are stored as a library in the program. Through the variable ModelDens (vide supra) the user can
choose between these fits and study the dependence of the results in this choice (it should be fairly small except,
perhaps, with the heavier elements and the HF densities which are not recommended). The individual components of
the model potential can be turned on or off through the use of the variable ModelPot (vide supra).
Van Wüllen has also shown that the calculation of analytical gradients with this approximation becomes close to
trivial and therefore scalar relativistic all electron geometry optimizations become easily feasible within the ZORA
approach. However, since T ZORA is constructed by numerical integration it is very important that the user takes
appropriate precaution in the use of a suitable integration grid and also the use of appropriate basis sets! In the case
of OneCenter true the numerical integration is done accurately along the radial coordinate and analytically along the
angular variables such that too large grids are not necessary unless your basis set is highly decontracted and contains
very steep functions.
The Douglas-Kroll-Hess (DKH) method expands the exact relation 6.157 in the external potential V. In ORCA the
first- and second-order DKH methods are implemtented. The first-order DKH Hamiltonian is given by
(1)
h̃++ = Ep + Ap V Ap + Bp V (p) Bp , (6.185)
with
s
p Ep + c2 c
EP = c4 + c2 p2 , Ap = , Bp = p (6.186)
2Ep 2Ep (Ep + c2 )
(2) (1) 1
h̃++ = h̃++ + [Wp , O] (6.187)
2
where
cσp
{Wp , Ep } = βO, O = Ap [Rp , V ] Ap , Rp = (6.188)
Ep + c2
(2)
define the second-order contribution. In ORCA, the spin-free part of h̃++ is implemented.
The occurrence of the relativistic kinetic energy, EP , which is not well-defined in position space, makes a transformation
to the p2 -eigenspace necessary. Thus any DKH calculation will start with a decontraction of the basis set, to insure
a good resolution of the identity. Then the non-relativistic kinetic energy is diagonalized and the EP -dependent
operators calculated in that space. The potential V and V (p) are transformed to p2 -eigenspace. After all contributions
368 6 Detailed Documentation
are multiplied to yield the (first- or second-order) Hamiltonian, the transformation back to AO space is carried out
and the basis is recontracted.
The (spin-free) DKH-Hamiltonians contain all spin-free, relativistic correction terms, eg the mass-velocity and Darwin
terms. As the potential enters linearly, no scaling or model potential is necessary to introduce the correct behaviour
of the energy under a change
V → V + const.
In all these respects the DKH Hamiltonians are much cleaner than the regular Hamiltonians.
Irrespective of which Hamiltonian has been used in the determination of the wave function, the calculation of properties
requires some special care. This can be understood in two ways: First of all, we changed from the ordinary Schrödinger
(2)
Hamiltonian h̃++ to the more complicated Hamiltonian. As properties are defined as derivatives of the energy, it is
clear that a new Hamiltonian will yield a new expression for the energy and thus a new and different expression for
the property in question. Another way of seeing this is that through the transformation U, we changed not only the
Hamiltonian but also the wave function. To obtain the property at hand as the expectation value of the property
operator with the wave function, we have to make sure that property operator and wave function are actually given in
the same space. This is done through a transformation of either the property operator or the wave function.
In any case, the difference between the non-relativistic and (quasi) relativistic property operator evaluated between
the (quasi) relativistic wave function is called the picture-change effect. From what was said above, this is clearly
not a physical effect. It describes how consistent the quasi relativistic calculation is carried out. A fully consistent
calculation requires the determination of the wave function on the (quasi) relativistic level as well as the use of the
(quasi) relativistic property operator. This is obtained through the choice
in the %rel block. It may be that the (quasi) relativistic and non-relativistic property operator do produce similar results.
In this case, a calculation with picture changes turned off (PictureChange false) may be a good approximation.
This is, however, not the rule and cannot be predicted before carrying out the calculation. It is therefore highly
recommended to set PictureChange true in all (quasi) relativistic property calculations! Consistent picture-change
effects on the DKH2 level have been implemented for the g-tensor and the hyperfine coupling tensor. Using
only first-order changes on the property operators are taken into account. This reduces the computational cost, of
course. But as this is in no way a significant reduction, this choice is not recommended.
For magnetic properties, the DKH transformation and consequently the DKH Hamiltonian and the corresponding
property operators are not unique. Depending on whether the magnetic field is included in the free-particle Foldy–
Wouthuysen (fpFW) transformation carried out in the first step of the DKH protocol or not, two different Hamiltonians
result. If the magnetic field is included in the fpFW transformation, the resulting Hamiltonian is a function of the
gauge invariant momentum
6.12 Relativistic Options 369
π = p + A. (6.189)
It is therefore gauge invariant under gauge transformations of the magnetic potential and thus are the property
operators derived from it. This is referred to as fπFW DKH Hamiltonian. If the magnetic field is not included in the
fpFW transformation, the resulting Hamiltonian is a function of the kinetic momentum p only and thus is not gauge
invariant. The latter Hamiltonian is referred to as fpFW DKH Hamiltonian. A comparison of both Hamiltonians is
given in Table 6.8.
Convergence of Eigenvalues
? yes
to Dirac Eigenvalues
1st order is bounded no yes
Reproduces Pauli Hamiltonian no yes
Gauge invariance no yes
Lorentz invariance no no
From this Table, it becomes clear that the fπFW DKH Hamiltonian is clearly preferred over the fpFW Hamiltonian.
To obtain the property operators, it is however necessary to take the derivatives of these Hamiltonians. It turns out
that in the case of the hyperfine-coupling tensor, the necessary derivatives produce divergent property operators in
the case of the fπFW DKH Hamiltonian. This may be due to the unphysical assumption of a point-dipole as a source
of the magnetic field of the nucleus. As a physical description of the magnetization distribution of the nucleus is not
available due to a lack of experimental data, the magnetization distribution is assumed to be the same as the charge
distribution of the nucleus, see Section 6.12.5. This is unphysical as the magnetization is caused by the one unpaired
nucleon in the nucleus whereas the charge distribution is generated by the protons in the nucleus. So, physically, the
magnetization should occupy a larger volume in space than the charge. This might also be the reason why the resulting
finite-nucleus model is insufficient to remedy the divergencies in the fπFW hyperfine-coupling tensor. Consequently,
for the hyperfine-coupling tensor only the one resulting from the fpFW DKH Hamiltonian is implemented. In the case
of the g-tensor both versions are implemented and accessible via the keyword
By default, this keyword is set to true. A detailed form of the property operators used for the g-tensor and
hyperfine-tensors can be found in Ref. [308].
A finite-nucleus model is available for all calculations in the ORCA program package. It is accessible from the %rel
block via
By default, this keyword is set to false. If the keyword is set to true, finite-nucleus effects are considered in the
following integrals:
370 6 Detailed Documentation
• nucleus potential V
• DKH-integral V (p)
• electric-field gradient EFG (and thus, as a consequence in the Fermi-contact and spin-dipole terms of the hfc
tensor)
• angular-momentum integral l
The finite-nucleus model implemented in ORCA is the Gaussian nucleus model of Ref. [309].
For relativistic calculations, special basis sets have been designed, both as DKH and ZORA recontractions of the
non-relativistic def2 basis sets for elements up to Xe, and as purpose-built segmented all-electron relativistically
contracted (SARC) basis sets for elements beyond Xe [5–9]. For many of the heavy elements, these are the only
all-electron basis sets available. They are controlled through the %basis block via
%basis
#----------------------------------------------------
# Specification of basis
#----------------------------------------------------
basis DKH_TZV # triple-zeta basis fit for DKH
calculations
DKH_QZV # quadruple-zeta basis fit for
DKH calculations
ZORA_TZV # triple-zeta basis fit
for ZORA/IORA calculations
ZORA_QZV # quadruple-zeta basis fit for
ZORA/IORA calculations
end
NOTE:
It is crucial to include both, the full basis in the one-keyword line and the relativistic basis in the basis block.
This may be a bit counterintuitive but is due to the following reason: Basis sets for heavy elements are simply stripped
down to their polarization and diffuse functions. This allows them to be combined either with ECPs replacing the
6.13 Geometry Optimization 371
core electrons or the DKH/ZORA basis sets described above explicitly including the core electrons – and doing so
suitably for a relativistic caluculation.
So if only the basis is specified in the one-keyword line, e.g. TZVPP, only polarization functions are used in the basis
set. This will, of course, give very wrong results as the basis set will then be reduced to four or five functions at best.
If on the other hand, only the DKH/ZORA basis is specified in the basis block, no polarization and diffuse functions
are added and again, the calculation is error-prone. It is always advisable to carefully check your output (perhaps also
with the PrintBasis keyword) in order to verify that the desired basis sets have indeed been assigned, especially in
cases where different basis sets are specified for different atoms.
NOTES:
• It is important to recognize that in the one-center approximation (OneCenter true) ALL methods can be used
for geometry optimization. Several papers in the literature show that this approximation is fairly accurate for
the calculation of structural parameters and vibrational frequencies. Since this approximation is associated
with negligible computational effort relative to the nonrelativistic calculation it is a recommended procedure.
• The same model potential as in ZORA can also be used in the DKH method. There is no experience with this
and one could also probably argue about the theoretical status of such an approximation. It is nevertheless
implemented and may prove to be useful.
• The ZORA/RI, IORA/RI and IORAmm/RI methods are also done with the model potential. Here we do the
integrals analytically except for the XC terms which has clear advantages. However, the RI approximation is
performed in the actual orbital basis sets which means that this set has to be large and flexible. Otherwise
significant errors may arise. If the basis sets are large (ZORA/RI) and the numerical integration is accurate
(ZORA), the ZORA and ZORA/RI (or IORA and IORA/RI) methods must give identical within to microhartree
accuracy.
ORCA is able to calculate equilibrium structures (minima and transition states) using the quasi Newton update
procedure with the well known BFGS update [83–88], the Powell or the Bofill update. The optimization can be carried
out in either redundant internal (recommended in most cases) or Cartesian displacement coordinates. As initial Hessian
the user can choose between a diagonal initial Hessian, several model Hessians (Lindh, Almloef, Schlegel), an exact
hessian and a partially exact Hessian (both recommended for transition state optimization) for both coordinate types.
In redundant internal coordinates several options for the type of step to be taken exist. The user can define constraints
via two different paths. He can either define them directly (as bond length, angle, dihedral or Cartesian constraints)
or he can define several fragments and constrain the fragments internally and with respect to other fragments. The
ORCA optimizer can be used as an external optimizer, i.e. without the energy and gradient calculations done by
ORCA.
# optimize hydrogens
optimizeHydrogens true
# in the context of a normal optimization all internal
# coordinates not involving any hydrogens are constrained
# in the context of a fragment optimization all internal
# coordinates involving hydrogens are optimized (also in a
# constrained fragment)
# freeze the hydrogen positions with respect to the
# heteroatoms
freezeHydrogens true
# invert the defined constraints, i.e. optimize the
# constraints and constrain the remaining coordinates
# this only works for the redundant internal coordinates
# Cartesian coordinates are not affected by invertConstraints
invertConstraints true # step type control
Step qn # quasi-Newton step
rfo # Rational function step (Default for !Opt)
gdiis # gdiis step
prfo # partitioned RFO step (Default for !OptTS)
UseGDIIS false # use GDIIS step (in Cartesian optimization)
# Default is false.
GDIISStart 1.0 # Gradient at which to start GDIIS algorithm
# (in Cartesian optimization)
GDIISMaxE 10 # number of last steps to use in GDIIS
# algorithm
# Step size control
MaxStep 0.3 # maximum step length in internal coordi-
# nates. Default is 0.3 au
Trust -0.3 # Initial trust radius. Default is -0.3 au
# Trust <0 - use fixed trust radius
# of size -trust. I.e. -0.3 means fix
# the trust radius at 0.3
# Trust >0 - use trust radius update. I.e. 0.3
# means start with trust radius 0.3 and update
# the trust radius after each optimization step
# Convergence tolerances. Note that the calculation is
# only converged if all criteria are fullfilled. All
# values given are default values.
TolE 5e-6 # Energy change (a.u.)
TolRMSG 1e-4 # RMS gradient (a.u.)
TolMaxG 3e-3 # Max. element of gradient (a.u.)
TolRMSD 2e-3 # RMS displacement (a.u.)
TolMaxD 4e-3 # Max. displacement (a.u.)
# keyword for frequently used sets of convergence thresholds
Convergence normal # Default
6.13 Geometry Optimization 375
loose
tight
ProjectTR false # project translation and rotation
# default is false. MUST be false for
# redundant internals
end
Keywords for the control of the Hessian (especially important for the TS optimization):
As for parameter scan runs ORCA has some special options that may help to speed up the optimization:
There are three types of internal coordinates: redundant internals, old redundant internals (redundant old) and
(nonredundant) delocalized internals. All three sets work with the same ‘primitive’ space of internal coordinates
(stretches, bends, dihedral angles and improper torsions). Only the redundant internals works with one more type of
bends in cases where a normal bend would have been approximately 180◦ . In redundant internal coordinates the full
primitive set is kept and the Hessian and gradient are transformed into this – potentially large – space. A geometry
optimization step requires, depending on the method used for the geometry update, perhaps a diagonalization or
inversion of the Hessian of dimension equal to the number of variables in the optimization. In redundant internal
coordinates this space may be 2-4 times larger than the nonredundant subspace which is of dimension 3Natoms − 6(5).
Since the diagonalization or inversion scales cubically the computational overhead over nonredundant spaces may easily
reach a factor of 8–64. Thus, in redundant internal coordinates there are many unnecessary steps which may take
some real time if the number of primitive internals is greater than 1000 or so (which is not so unusual). The timing
problem may become acute in semiempirical calculations where the energy and gradient evaluations are cheap.
In order to deal with this situation, there is a second method implemented in ORCA which is based on (nonredundant)
delocalized internal coordinates. If everything is well, the two methods show identical convergence since they start from
the same Hessian and finally they span the same space. However, the delocalized internals take significantly less time
for the geometry update since the dimension of the matrices to be manipulated is only the required 3Natoms − 6(5)
and there are no expensive transformation. The (only) drawback of the delocalized internals is that the iterative
backtransformation from internal to Cartesian coordinates is — in our experience — less robust than in redundant
internal coordinates and may fail. In this case you have to revert to redundant internals. If everything goes well,
delocalized internals are a good choice.
In order to appreciate these differences we briefly outline the theoretical background which is not difficult to
understand:
Suppose, we have a set of nI (redundant) primitive internal coordinates q constructed by some recipe and a set of
nC = 3Natoms Cartesian coordinates x. The B-matrix is defined as:
∂qi
Bij = (6.190)
∂xj
This matrix is rectangular. In order to compute the internal gradient one needs to compute the ‘generalized inverse of
B. However, since the set of primitive internals is redundant the matrix is rank-deficient and one has to be careful. In
pratice one first computes the nI × nI matrix G:
378 6 Detailed Documentation
G = BBT (6.191)
The generalized inverse of G is denoted G− and is defined in terms of the eigenvalues and eigenvectors of G:
!T ! !
− U Λ−1 0 U
G = (6.192)
R 0 0 R
Here U are the eigenvectors belonging to the nonzero eigenvalues Λ which span the nonredundant space and R are
the eigenvectors of the redundant subspace of the primitive internal space. If the set of primitive internals is carefully
chosen, then there are exactly 3Natoms − 6(5) nonzero eigenvalues of G. Using this matrix, the gradient in internal
coordinates can be readily computed from the (known) Cartesian gradient:
gq = G− Bgx (6.193)
The initial Hessian is formed directly in the redundant internal space and then itself or its inverse is updated during
the geometry optimization.
Before generating the Newton step we have to ensure that the displacements take place only in the nonredundant part
of the internal coordinate space. For this purpose a projector P 0 :
P0 = GG− = G− G (6.194)
g̃q = P0 gq (6.195)
H̃q = P0 Hq P0 + α 1 − P0
(6.196)
The second term for H̃ sets the matrix elements of the redundant part of the internal coordinate space to very large
values (α = 1000).
Coordinate steps
A Quasi-Newton (QN) step is the simplest choice to update the coordinates and is given by:
∆q = −H̃−1
q g̃q (6.197)
A more sophisticated step is the rational function optimization step which proceeds by diagonalizing the augmented
Hessian:
! ! !
Hq gq ∆q ∆q
=v (6.198)
gq 0 1 1
6.13 Geometry Optimization 379
The lowest eigenvalue ν0 approaches zero as the equilibrium geometry is approached and the nice side effect of the
optimization is a step size control. Towards convergence, the RFO step is approaching the quasi-Newton step and
before it leads to a damped step is taken. In any case,each individual element of ∆q is restricted to magnitude
MaxStep and the total length of the step is restricted to Trust. In the RFO case, this is achieved by minimizing
the predicted energy on the hypersphere of radius Trust which also modifies the direction of the step while in the
quasi-Newton step, the step vector is simply scaled down.
However, which Cartesian coordinates belong to the new redundant internal set? This is a somewhat complicated
problem since the relation between internals and Cartesians is very nonlinear and the step in internal coordinates is
not infinitesimal. Thus, an iterative procedure is taken to update the Cartesian coordinates. First of all consider the
first (linear) step:
∆x = A∆q (6.200)
with A = BT G− . With the new Cartesian coordinates xk+1 = xk + ∆x a trial set of internals qk+1 can be computed.
This new set should ideally coincide with qnew but in fact it usually will not. Thus, one can refine the Cartesian step
by forming
which should approach zero. This leads to a new set of Cartesians ∆x0 = A∆∆q which in turn leads to a new set of
internals and the procedure is iterated until the Cartesians do not change and the output internals equal qnew within
a given tolerance (10−7 RMS deviation in both quantities is imposed in ORCA).
Now, consider working with the nonredundant subspace qD = Uq. In this case, the whole procedure becomes rather
simple. The ‘delocalized’ B-matrix is:
BD = UT B (6.202)
The corresponding G matrix is not rank deficient and can be readily inverted. Then, the gradient in delocalized
internals is calculated as:
gD = G−
D BD gc (6.203)
The initial (diagonal) Hessian in q-space is converted to qD simply by UT H0 U. Then the update procedure and
perhaps the diagonalization in the RFO step only works in the nonredundant 3N − 6(5) subspace instead of the
full primitive internal space which is an advantage. The back-transformation of the step in delocalized internals to
Cartesians is completely analogous to the redundant internal case. However, in my experience it is less robust than in
the latter case. In principle, the nonredundant subspace changes in every iteration since the B-matrix changes in every
iteration. However, if one would take this into account the whole computational advantage of the delocalized internals
is lost. Consequently, the delocalized internals are kept fixed and unless the geometry undergoes a qualitative change
during the optimization this is not expected to have a large influence on the convergence characteristics. The final
geometries predicted with any type of coordinates should of course always be the same.
380 6 Detailed Documentation
Constrained Optimization
Constraints on the redundant internal coordinates can be imposed by modifying the above projector P 0 with a
projector for the constraints C:
C is a diagonal matrix with 1’s for the constraints and 0’s elsewhere. The gradient and the Hessian are projected with
the modified projector:
g̃q = P gq (6.205)
H̃q = P Hq P + α (1 − P ) (6.206)
The constrain fragments option was implemented in order to provide a convenient way to handle constraints for
systems consisting of several molecules. The difference to a common optimization lies in the coordinate setup. In a
common coordinate setup the internal coordinates are built up as described in the following:
In a first step, bonds are constructed between atom pairs which fulfill certain (atom type specific) distance criteria. If
there are fragments in the system, which are not connected to each other (this is the case when there are two or more
separate molecules), an additional bond is assigned to the nearest atom pair between the nonbonded fragments. All
other internal coordinates are constructed on the basis of this set of bonds. Here, in a second step, bond angles are
constructed between the atoms of directly neighboured bonds. If such an angle reaches more than 175◦ , a special type
of linear angles is constructed. In a third step, dihedral angles (and improper torsions) are constructed between the
atoms of directly neighboured angles.
If the constrain fragments option is switched on, the set of bonds is constructed in a different way. The user defines
a number of fragments. For each fragment a full set of bonds (not seeing the atoms of the other fragments) is
constructed as described above. If using this option, the user also has to define which fragments are to be connected.
The connection between these fragments can either be user-defined or automatically chosen. If the user defines the
connecting atoms N1 and N2, then the interfragmental bond is the one between N1 and N2. If the user does not define
the interfragmental bond, it is constructed between the atom pair with nearest distance between the two fragments.
Then the angles and dihedrals are constructed upon this (different) set of bonds in the already described fashion.
Now let us regard the definition of the fragment constraints: A fragment is constrained internally by constraining all
internal coordinates that contain only atoms of the respective fragment. The connection between two fragments A and
B is constrained by constraining specific internal coordinates that contain atoms of both fragments. For bonds, one
atom has to belong to fragment A and the other atom has to belong to fragment B. Regarding angles, two atoms have
to belong to fragment A and one to fragment B and vice versa. With respect to dihedrals, only those are constrained
where two atoms belong to fragment A and the other two belong to fragment B.
6.13 Geometry Optimization 381
As transition state finder we implemented the well-established eigenvector following algorithm using a P-RFO step as
implemented by Baker [88]. This algorithm is a quasi-Newton like algorithm.
The Taylor series of the energy, truncated after the quadratic term, is:
1
E = E0 + gq + ∆qq + ∆q + Hq ∆q (6.207)
2
The Newton-Raphson step to get from the actual point to a stationary point is:
X Vi+ gq Vi
∆q = −H−1
q gq = − (6.208)
bi
with Vi and bi as eigenvectors and eigenvalues of the Hessian Hq . This step leads to the nearest stationary point on
the PES. This stationary point can be a minimum or a saddle point, according to the curvature of the PES at the
actual point.
With a simple shift of the Hessian eigenvalues bi in this equation one can guide the step to a stationary point with the
required characteristics (Hessian with exactly one negative eigenvalue). The transition state search is separated into
two different optimization problems. The energy is maximized along one Hessian eigenmode and minimized along
the remaining 3N − 7(6) eigenmodes. We introduce two different shift parameters λp and λn , where λp is the shift
parameter for the eigenmode being maximized and λn shifts the Hessian eigenvalues of the modes being minimized.
This method allows us to maximize along any mode, not only the one with smallest eigenvalue. Starting from two
different RFO-matrices for the different optimization problems (see description above) we get for λp and λn :
1 1 Fi2
q X
λp = bk + b2k + 4Fk2 and = λn (6.209)
2 2 λ n − bi
i6=k
whereas Fi = Vi+ g is the component of g along the Hessian eigenmode Vi and λn has to get solved iteratively. The
solution for λn has to be negative and lower than b2 (or lower than b1 , if not the lowest mode is being followed). If the
Hessian has more than one negative eigenvalue, these properties might not be fulfilled, and the Hessian would have to
be modified. In our implementation the Hessian diagonal elements are either shifted or reversed in such a case.
Once the shift parameters are known the P-RFO step h is calculated as follows:
F̄k Vk F̄i Vi
∆qk = − and ∆qi = − with i = 1 . . . n, i 6= k (6.210)
bk − λ p bi − λ n
n
X
∆q = ∆qj (6.211)
j=1
382 6 Detailed Documentation
ScanTS option
For TS modes of rather local nature (involving only one bond or an angle; no concerted movements over multiple atoms)
we implemented the ScanTS feature. Here the user can carry out a relaxed surface scan and a TS optimization in one
calculation. After the relaxed surface scan the algorithm chooses the optimized structure of the scan with highest energy
as initial guess structure and the two neighbouring structures for the calculation of the second derivative of the scanned
coordinate (e.g., if scan step number 4 gives the structure with highest energy, then structure basename.004.xyz
is the initial guess for the TS optimization; the structures basename.003.xyz and basename.005.xyz are used for
the calculation of the second derivative). Before the first step of the subsequent TS optimization the energies and
gradients for all three structures are calculated. The gradients are then transformed to internal coordinates. The
diagonal Hessian value of the scanned coordinate is then calculated via finite difference of the internal gradients of the
two given structures (003 and 005 in our example).
For the construction of the initial Hessian a model force field Hessian is built up (this Hessian has got only diagonal
entries and zeros as off-diagonal elements). The exactly calculated diagonal Hessian value replaces the model force
field Hessian entry for the respective internal coordinate.
If the user already performed a regular relaxed surface scan without the subsequent TS optimization, then he can
nevertheless use these structures for the same procedure. A relaxed surface scan always gives you the xyz-files and
gbw-files of the optimized structures of each scan step. A separate TS optimization can be carried out where the
structure with highest energy is the starting structure. Additionally the two files with the two adjacent structures (as
explained above) have to be provided (via the Hess Internal keyword, see below). Furthermore, the internal coordinate,
for which the diagonal Hessian value has to be calculated, has to be given (the previously scanned coordinate). This
exact Hessian calculation is only possible for one internal coordinate:
%geom
Hess_Internal
{B 1 0 C} # previously scanned coordinate
XYZ1 "scanName.003.xyz" # the xyz-files of the structures
XYZ2 "ScanName.005.xyz" # next to the highest energy point
GBW1 "ScanName.003.gbw" # the gbw-files of the structures
GBW2 "ScanName.005.xyz" # next to the highest energy
# the gbw-files are optional
end
end
Additionally the manipulation of the diagonal Hessian values of the internal Hessian is possible for further internal
coordinates, but without an extra calculation. Here the user can just define a value (in Eh/Bohr2 ).
Hess_Internal
{A 3 2 1 D 2.0} # define a diagonal Hessian value of
# 2 Eh/Bohr2 for the angle between
# atoms 3 2 1
{B 1 0 D -0.5} # define a diagonal Hessian value of
# -0.5 Eh/Bohr2 for the bond between
# atoms 1 and 0
end
6.13 Geometry Optimization 383
The definition of such Hessian (diagonal) elements is possible for multiple internal coordinates. These just replace the
values of the force field model Hessian.
Hybrid Hessian
We implemented the calculation of a “Hybrid Hessian” as an alternative to the full Hessian calculation for TS
optimization. Here only those parts of the Hessian, that are important for the TS optimization, are calculated exactly.
For this calculation we define two kinds of atoms: atoms whose couplings with the other atoms are treated exactly (E)
and atoms whose couplings are treated approximately (A).
In a first step an Almloef model Hessian is built up in redundant internal coordinates and transformed to Cartesian
coordinates. This Hessian gives the second derivative elements for atom pairs A/A. In a second step the second
derivative elements between pairs E/E and E/A are calculated numerically as in a numerical frequency calculation:
i,B eq.
∆E ∆E gj,C − gj,C
= = (6.212)
∆iB ∆jC ∆jC ∆iB displ.
with:
i, j : x-, y- or z-direction
We implemented the Partial Hessian Vibrational Analysis (PHVA), as published by Li, Jensen in [91], for the analysis
of the nature of stationary points of structures obtained with QM/MM optimizations.
NOTE
• This procedure should be used for QM/MM optimized structures only to verify the nature of the stationary
point and have an estimate of the ZPE.
Here we shortly describe the procedure: In PHVA we divide the system into two parts B and C. Let the atom set B
belong to the region where the chemical change is localized. The Partial Hessian matrix is built up as follows:
!
KBB 0
ε
(6.213)
0 KCC
With:
ε 0 0
ε
KCC
= .. −8
0 . 0 , ε = 10 au, (6.214)
0 0 ε
• Six zero eigenvalues with modes corresponding to translational and rotational motion of the entire molecule.
• 3*(N - n) - 6 small (less than 1 cm−1 ) eigenvalues with modes corresponding mainly to internal motion within
region C.
• Three eigenvalues (typically less than 10 cm−1 ) with modes corresponding mainly to motion of region C relative
to region B.
• 3n - 3 eigenvalues with modes corresponding mainly to relative motion of B and C as well as internal motion
within region B.
The MECP optimization allows the user to optimize to structures where two different potential energy surfaces (PES1
and PES2) cross each other. In this optimization two conditions apply: the energy E1 of PES1 is minimized while at
the same time the energy difference (E1 − E2 )2 of both surfaces is minimized. For the implementation we follow in
principle the suggestions of Harvey et al. in [90].
∂
f= (E1 − E2 )2 = 2 (E1 − E2 ) · x1 (6.215)
∂q
∂E1 ∂E2
x1 = − (6.216)
∂q ∂q
The gradient
∂E1 x1 ∂E1 x1
g= − · (6.217)
∂q |x1 | ∂q |x1 |
is orthogonal to x1 .
Both gradients are combined to yield the effective surface crossing gradient
gSC = g + f (6.218)
The crossing hyperline is defined as the 3N − 7 dimensional subspace of PES1, which is orthogonal to x1 . In the
MECP optimization we want to find the point of lowest energy within this subspace.
Our calculation of normal modes and force constants for movements along the crossing hyperline differ from the one
proposed by Harvey et al. A standard frequency analysis can not be performed, but a similar procedure is applied:
Let us regard the second-order Taylor expansion for the energy of both surfaces near the MECP for a displacement
along the crossing hyperline (orthogonal to x1 ):
1 T
EA = EM ECP + ∆q Hef f,A ∆q (6.219)
2
with:
Diagonalization of this effective Hessian gives us the normal modes of the crossing hyperline and thus allows us to
decide whether the MECP optimization converged to a minimum in the 3N − 7 dimensional subspace of the crossing
hyperline.
The procedure for the calculation of the effective Hessian is now as follows: For each of both surfaces the second
derivative matrix is calculated. Then the 6 rotations and translations and additionally the direction of the gradient
difference vector x1 (this ensures that movement orthogonal to the crossing hyperline, for which we do NOT satisfy
the conditions of a stationary point, is excluded) are projected out from the Hessian matrix.
%mecp
SurfCrossOpt true # switches on the MECP optimization
# alternatively use: ! SurfCrossOpt
SurfCrossNumFreq true # switches on the MECP effective Hessian
# calculation
# alternatively use: ! SurfCrossNumFreq
# separate MO input for the second spin state (PES2)
moinp "Myfile.gbw"# MO input for PES2
# information on the electronic structure of PES 2
Mult 3 # multiplicity of PES2
brokenSym 1,1 # broken symmetry for PES2
# CASSCF options for PES2 (also see the CASSCF chapter)
casscf_nel 6 # number of active space electrons
casscf_norb 6 # number of active orbitals
casscf_mult 1,3 # multiplicities singlet and triplet
casscf_nroots 4,2 # four singlets, two triplets
casscf_bweight 2,1 # singlets and triplets weighted 2:1
casscf_weights[0] = 0.5,0.2,0.2,0.2 # singlet weights
casscf_weights[1] = 0.7,0.3 # triplet weights
end
If you want to use numerical instead of analytic gradients you have to use
! NumGrad
in your input file. Additionally the settings for the numerical differentiation can be changed:
%numgrad
CentralDiff true # (Default) You should use two-sided numerical
# differentiation, but it is possible to switch
# to one-sided numerical differentiation.
DX 0.005 # Increment in Bohr for the differentiation.
TransInvar true # (Default) Take advantage of translation invariance
end
If you want to use only the optimizer of ORCA you have to use
! ExtOpt
6.13 Geometry Optimization 387
in your input file. All information that you give on the electronic structure is discarded. In each optimization step
ORCA writes a file called “extopt.extcomp.inp” with the following format:
example:
9 1 0 1
6 -7.183647732744 1.832728827744 -0.116462028781
9 -6.344271117689 -0.569555640677 -0.053332293594
9 -6.385938620292 3.010680341363 1.994410067976
9 -9.725973988287 1.760800299423 -0.041860336809
6 -6.281650723853 3.228508119832 -2.541654671259
1 -7.049215894384 2.192752895053 -4.164371259742
1 -7.120030511673 5.123374809616 -2.502306840221
8 -3.579612411580 3.262825146858 -2.485537715188
1 -3.134995715660 4.196025355887 -4.047828323839
If a Hessian is requested, it should be stored in the ORCA Hessian file format and be named “yourInputFilename.hess”.
ORCA then calls a script (that is not distributed with the ORCA binaries):
Your script starts the energy, gradient (and Hessian) calculation and finally provides the results in a file called
“extopt.extcomp.out”, which has to be written in the following format:
Total Energy
gradient(x) on atom1 gradient(y) on atom1 gradient(z) on atom1
...
gradient(x) on atomN gradient(y) on atomN gradient(z) on atomN
example:
-1.135276876846e+02
-1.144030900000e-05 3.458417100000e-05 7.686904800000e-06
-4.450221700000e-05 -2.016015000000e-05 -2.617359400000e-05
4.460242300000e-05 -3.290908700000e-05 5.698279500000e-06
388 6 Detailed Documentation
NOTE:
• the energy should be given in Eh, gradients should be given in Eh/Bohr, Hessian values should be given in
Eh/Bohr2
ORCA then performs the next optimization step, checks for convergence, and if the optimization has not yet converged,
it goes on to the next optimization step.
Gaussian as External Optimizer. To use the external optimizer from Gaussian in ORCA, the following keywords
were provided in the past:
%geom
UseGaussian true # Use the external Gaussian optimizer instead
# of the ORCA optimizer.
GaussianName "GAU" # String defining the name of the Gaussian
# optimizer
GauOptFlags # String indicating the optimization flags
Gaussian Constraints # List defining the constraints for
# the Gaussian optimizer.
end
Since the ORCA team got banned by Gaussian in January 2007 we can no longer support these option flags. They
have not been removed from the code and may or may not work. If there is trouble with it we can – unfortunately –
not offer any help since we do not have access to the Gaussian code any longer.
ORCA features a relatively efficient single-excitation CI (CIS) and time-dependent DFT module that can be used to
calculate excitation energies, absorption intensities and CD intensities. Especially TD-DFT became very popular
for excited state calculations as it offers significantly better results than HF-CIS at about the same cost. However,
there are also many pitfalls of TD-DFT, some of which are discussed in reviews [310] [311]. TD-DFT methods are
available for closed shell and spin-unrestricted reference states. Analytic gradients are available. There also is a
doubles correction implemented that improves the results (but also the computational cost). It is often used together
with double hybrid functionals as explained below. The TD-DFT module of ORCA is also extensively used for the
calculation of X-ray absorption spectra at the K-edge of a given element.
6.14 Excited States via CIS and TD-DFT 389
%cis end
# or equivalently
%tddft end
There are a variety of options. The most important one is the number of excited states that you want to have
calculated:
%cis NRoots 10
MaxDim 100
end
The variable NRoots gives the number of excited states to be calculated. MaxDim is the maximum dimension of the
expansion space in the Davidson procedure. If MaxDim ≈ 5-10 times NRoots the calculations will show favorable
convergence but also increased disk space demands. In general the larger NRoots the more core memory is needed
while the disk space requirements are proportional to MaxDim.
The variable ETol gives the required convergence of the energies of the excited states (in Eh) and RTol is the required
convergence on the norm of the residual vectors. Under normal ciorcumstances the calculations need about 5-10
iterations to converge to the default convergence tolerances.
If closed shell references are used the program can calculate the singlet and triplet excited states at the same time by
using:
This is available for all combinations of methods except double hybrid DFT or analytic gradients.
In order to control the orbitals that should be taken into account in the calculation two mechanisms are available.
The first mechanism is the default mechanism and consists of specifying and orbital energy window within which all
single excitations will be considered:
390 6 Detailed Documentation
Thus, the default is to keep core orbitals frozen and to neglect very high lying virtual orbitals which is a sensible
approximation. However, you may want to consider to include all virtual orbitals by choosing for example EWin
-3,10000. The second mechanism is to explicitly give an orbital energy window for each operator, i.e.
The “-1”’s in the above example mean that the HOMO and LUMO for the spin-.up and spin-down orbitals will be
automatically determined by the program.
In using the CIS/TD-DFT module five different types of calculations should be distinguished:
• Semiempirical methods
• Hartree-Fock calculations
• DFT calculations with HF exchange and MP2 correlation (double hybrid functionals)
The semiempirical INDO/S method is very suitable to calculate absorption spectra of medium sized to large organic
and inorganic molecules. It has been parameterized by the late M.C. Zerner for optical spectroscopy and in my
experience at least, it tends to work nicely for many systems. With the semiempirical approach it is easy to calculate
many states of large molecules. For example, consider the following calculation on a bis-histdine ligated iron-porphyrin
model (in the Fe(II) state) that includes 92 atoms and ≈ 16,500 CSFs in the single excitation space. Yet the calculation
requires only a few minutes on an ordinary computer for the prediction of the first 40 excited states.
The calculated spectrum is in essentially reasonable agreement with experiment in showing a huge band around 400
nm (the famous Soret band) and a smaller but still intense band between 500 and 550 nm (the Q-band). There are no
predicted absorptions below ≈ 10,000 cm−1 .
# -----------------------
# ORCA Test
# -----------------------
#
# Test CIS in conjunction with INDO/S
#
! RHF ZINDO/S TightSCF DIIS NoRICO NoMOPrint
%cis NRoots 40
6.14 Excited States via CIS and TD-DFT 391
MaxDim 160
end
* xyz 0 1
Fe -0.01736 0.71832 -0.30714
C 2.65779 4.03195 -0.13175
C 3.51572 3.02488 -0.24101
C 2.66971 1.82027 -0.30891
C 3.30062 0.51609 -0.42755
C 2.61022 -0.60434 -0.47131
C 3.32146 -1.89491 -0.57434
C 2.35504 -2.79836 -0.57179
C 1.11740 -1.99868 -0.46878
C -0.04908 -2.61205 -0.44672
C -1.30967 -1.89127 -0.38984
C -2.58423 -2.63345 -0.40868
C -3.50492 -1.68283 -0.37930
C -2.72946 -0.42418 -0.33711
C -3.35747 0.73319 -0.28970
C -2.66935 2.01561 -0.22869
C -3.31167 3.19745 -0.16277
C -4.72835 3.62642 -0.14517
C -5.84825 2.89828 -0.20597
C -2.21443 4.15731 -0.09763
C -1.11572 3.39398 -0.14235
C 0.19578 4.02696 -0.10122
C 1.33370 3.36290 -0.15370
C 3.09165 5.44413 -0.02579
C 2.35656 6.55323 0.10940
N 1.43216 2.09428 -0.24815
N 1.34670 -0.74673 -0.42368
N -1.39885 2.15649 -0.21891
N -1.47620 -0.63353 -0.34705
C 5.03025 3.02708 -0.28544
C 4.81527 -2.12157 -0.66646
C -5.01065 -1.83771 -0.38886
C -2.28137 5.66820 -0.00321
C -2.73691 -4.14249 -0.43699
C -2.42579 -4.72805 -1.83259
C 2.45978 -4.31073 -0.64869
C 2.19678 -4.82182 -2.08201
C 1.60835 -6.22722 -2.10748
C -1.90102 -6.15737 -1.82447
O -1.96736 -6.92519 -2.75599
O 1.60982 -7.01844 -1.19330
O -1.15355 -6.41323 -0.74427
O 0.89871 -6.41433 -3.22828
H 4.17823 5.62170 -0.05623
H 2.86221 7.53117 0.17503
H 1.26303 6.57673 0.17212
H 0.21799 5.11603 -0.03468
H -1.78003 6.14426 -0.87498
H -3.32281 6.05139 0.01906
H -1.78374 6.03115 0.92347
H -4.89690 4.71221 -0.07358
H -6.82566 3.40843 -0.18007
H -5.88239 1.80643 -0.28628
392 6 Detailed Documentation
Figure 6.4: Structure of the iron-porphyrin used for the prediction of its absorption spectrum (the
structure was obtained from a molecular mechanics calculation and the iron-imidazole
bondlength was set to 2.0 Å).
Figure 6.5: The ZINDO/S predicted absorption spectrum of the model iron porphyrin shown above.
The spectrum has been plotted using the orca mapspc tool.
Note that ORCA slightly departs from standard ZINDO/S in using dipole integrals in the intensity calculations that
include all one- and two-center terms which are calculated via a STO-3G expansion of the Slater basis orbitals. The
calculated intensities are not highly accurate anyways. In the present case they are overestimated by a factor of ≈
2.
394 6 Detailed Documentation
For HF calculations the module will always calculate the CI-singles wavefunctions. The “random-phase approximation”
(RPA) is not implemented as it will generally not improve the results and is algorithmically somewhat more involved.
In general, CIS calculations do not lead to good agreement with experimental excitation energies and errors of 1-5 eV
are common. Therefore HF/CIS is mostly a qualitative tool or can be used with caution for larger molecules if more
extensive and more well balanced CI calculations are not computationally tractable.
For non-hybrid functionals there is the choice between the full TD-DFT treatment and the so-called Tamm-Dancoff
approximation (TDA). The TDA is the same approximation that leads from RPA to CIS (i.e. neglect of the so-called
“B” matrix). The results are usually very similar between the two approaches. The TDA is turned on by:
TIP:
• For TDA=true it is recommended to put Etol=-1 and RTol=1e-5 . . . 1e-4 since the convergence is normally
significantly slower as for TDA=false.
If you insist on using hybrid functionals TDA=true is required and will be enforced by the program. There are
situations where hybrid functionals give significantly better results than GGA functionals since they suffer less from
the self-interaction error. The RIJCOSX procedure [69] [141] leads to very large speedups in such calculations at
virtually no loss in accuracy [312].
The program can compute a doubles correction to the CIS excitation energies. The theory is due to Head-Gordon an
co-workers. [313] The basic idea is to compute a perturbative estimate (inspired by EOM-CCSD theory) to the CIS
excited states that is compatible with the MP2 ground state energy. In many cases this is a significant improvement
over CIS itself and comes at a reasonable cost since the correction is computed a posteriori. Of course, if the CIS
prediction of the excited state is poor, the (D) correction – being perturbative in nature – cannot compensate for
qualitatively wrong excited state wavefunctions.
In addition – and perhaps more importantly – the (D) correction is compatible with the philosophy of the double
hybrid functionals and should be used if excited states are to be computed with these functionals. The results are
usually much better than those from TD-DFT since due to the large fraction HF exchange, the self-interaction error is
much smaller than for other functionals and after the (D) correction the results do not suffer from the overestimation
of transition energies that usually comes with increased amounts of HF exchange in TD-DFT calculations.
6.14 Excited States via CIS and TD-DFT 395
Since the calculations would require a fairly substantial integral transformation that would limit it to fairly small
molecules if no approximation are introduced we have decided to only implement a RI version of it. With this
approximation systems with more than 1000 basis functions are readily within the reach of the implementation.
Since one always has a triad of computational steps: MP2-CIS solution-(D) correction, we have implemented several
algorithms that may each become the method of choice under certain circumstances. The choice depends on the size
of the system, the number of roots, the available main memory and the available disk space together with the I/O
rate of the system. The formal cost of the (D) correction is O(N5 ) and its prefactor is higher than that of RI-MP2. In
the best case scenario, the rate limiting step would be the calculation of the pair-contribution in the ‘U-term’ which
requires (for a closed-shell system) twice the effort of a RI-MP2 calculation per state.
Table 6.9: Integral handling in various implementations of the (D) correction (i,j=occupied MOs, a,b=virtual MOs,
Q=aux function; NumInt=numerical integration).
DCORR= 1 2 3 4
(ia|jb) integrals Stored Stored Not stored Not stored
(ij|ab) integrals Stored Not made Not made Not made
(ab|Q) integrals Stored Not made Not made Stored
(ij|Q) integrals Stored Stored Stored Stored
(ia|Q) integrals Stored Stored Stored Stored
Coulomb CIS From (ia|jb) From (ia|jb) From (ia|Q) From (ia|Q)
Exchange CIS From (ij|ab) RI-AO-direct RI-AO-direct From (ab|Q)
XC-CIS Num. Int. Num. Int. Num. Int. Num. Int.
V-term in (D) From (ia|jb) From (ia|jb) From (ia|Q) From (ia|Q)
U-term in (D) From (ab|Q) RI-AO-direct RI-AO-direct From (ab|Q)
NOTE:
• In all three involved code sections (MP2, CIS, (D)) the storage format FLOAT is respected. It cuts down use of
disk and main memory by a factor of two compared the default double precision version. The loss of accuracy
should be negligible; however it is – as always in science – better to double check.
396 6 Detailed Documentation
• The (ab|Q) list of integrals may be the largest for many systems and easily occupies several GB of disk space
(hence algorithms 2 and 3). However, that disk-space is often well invested unless you run into I/O bottlenecks.
• The (ia|jb) and (ij|ab) lists of integrals is also quite large but is relatively efficiently handled. Nevertheless, I/O
may be a problem.
• Making the exchange contribution to the CIS residual vector in an RI-AO direct fashion becomes quite expensive
for a larger number of states. It may be a good choice if only one or two excicted states are to be calculated for
a larger system.
Results of TD-DFT or CIS calculations can be tedious to interprete as many individual MO pairs may contribute
to a given excited state. In order to facilitate the analysis while keeping the familiar picture of an excited state
originating from essentially an electron being promoted from a donor orbital to an acceptor orbital, the device of
”natural transition orbitals” can be used.
The procedure is quite straightforward. For example, consider the following job on the pyridine molecule:
%tddft nroots 5
DoNTO true # flag to turn on generation of natural transition orbitals
NTOStates 1,2,3 # States to consider for NTO analysis;
#if empty all will be done
NTOThresh 1e-4 # threshold for printing occupation numbers
MaxDim 100
end
* xyz 0 1
N 0.000000 0.000000 1.401146
C 0.000000 1.146916 0.702130
C 0.000000 -1.146916 0.702130
C -0.000000 1.205574 -0.702848
C -0.000000 -1.205574 -0.702848
C 0.000000 -0.000000 -1.421344
H -0.000000 2.079900 1.297897
H -0.000000 -2.079900 1.297897
H -0.000000 2.179600 -1.219940
H -0.000000 -2.179600 -1.219940
H 0.000000 0.000000 -2.525017
*
------------------------------------------
NATURAL TRANSITION ORBITALS FOR STATE 1
------------------------------------------
------------------------------------------
NATURAL TRANSITION ORBITALS FOR STATE 3
------------------------------------------
-----------------------------------------------------------------------------
ABSORPTION SPECTRUM VIA TRANSITION ELECTRIC DIPOLE MOMENTS
-----------------------------------------------------------------------------
State Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (au**2) (au) (au) (au)
-----------------------------------------------------------------------------
1 34785.0 287.5 0.004079502 0.03861 -0.19649 0.00000 -0.00000
2 35118.0 284.8 0.000000000 0.00000 0.00000 0.00000 0.00000
3 43259.2 231.2 0.024852699 0.18913 -0.00000 0.43490 -0.00000
4 49592.3 201.6 0.000013122 0.00009 0.00000 0.00000 -0.00933
5 54405.8 183.8 0.027126662 0.16414 -0.00000 -0.40515 -0.00000
We see that there is a weakly allowed transition (S1) that is essentially totally composed of a single NTO pair (20a
-¿ 21a : n= 0.99825296), while the third excited state (S3) is strongly allowed and requires two NTO pairs for its
description (20a -¿ 21a : n= 0.64493520 and 19a -¿ 22a : n= 0.34962356).
These orbitals are shown below. It is evident that the S1 state donor orbital (NTO10) is a nitrogen lone pair and the
398 6 Detailed Documentation
acceptor orbital is a pi* orbital of the ring. For the S3 state the two NTO donor orbitals are comprised of a nearly
degenerate set of pi orbitals (they would be degenerate in the parent benzene) and the acceptor orbitals are a pair of
nearly degenerate pi* orbitals. It is evident from this example that by looking at the NTOs one can obtain a nicely
pictorial view of the transition process, even if many orbital pairs contribute to a given excited state in the canonical
basis.
Figure 6.6:
fig:742
If the SCF calculation used the RI approximation it will also be used in the TD-DFT calculation. The RI approximation
saves a large amount of time while giving close to identical results (the errors will usually be ¡0.1 eV) and is generally
recommended. If the functional is a hybrid functional the RI-approximation will only be applied to the Coulomb term
while the exchange will be treated as before. In the SCF you can use this feature with the keyword (! RIJONX). It
will then also be used in the TD-DFT calculation. Again, the RIJCOSX approximation can be used in TD-DFT and
CIS calculations and leads to very large speedups at virtually no loss in accuracy.
As an alternative to the direct AO-basis computation ORCA allows to use RI-integrals transformed to the MO basis to
generate the CI matrix. This algorithm is more disk-intensive. However, for medium sized molecules we have observed
speedups on the order of 15 or more with this method. It is particularly benefitial together with hybrid functionals.
In order to use this method you have to specify mode riints in the %tddft block and you also have to assign an
auxiliary basis set (for example SV/C). There is a second algorithm of this kind that is labelled mode riints disk
6.14 Excited States via CIS and TD-DFT 399
Note that the auxiliary basis set has to be valid for correlation treatments in case that you have a hybrid functional.
Thus the basis sets developed for RI-MP2 are suitable (def2-SVP/C, def2-TZVP/C and def2-TZVPP/C). If you have a
non-hybrid functional the normal RI-J auxiliary basis sets are fine.
NOTE:
• Do not forget to assign a suitable auxiliary basis set! If Hartree-Fock exchange is present (HF or hybrid-DFT)
these are the auxiliary bases optimized for correlation while for non-hybrid functionals the standard RI-J bases
are suitable.
• The standard auxiliary basis sets may not be suitable if you have diffuse functions present and want to study
Rydberg states. You have to augment the axuliary basis with diffuse functions yourself in this case.
• Be prepared that the transformed integrals take up significant amounts of disk space.
If the SCF calculation is carried out in an integral direct fashion this will also be done in the CIS/TD-DFT calculation.
Thus, no bottlenecks arising from large integral transformations or large disk space requirement arise in the calculations.
An exception is the MO based RI approximations described in the previous section.
For valence excited states the usual orbital basis sets are reasonable. Thus, with polarized double-zeta basis sets sensible
results are obtained. Especially DFT calculations have the nice feature of not being overly basis set dependent.
If Rydberg states are desired you should make sure that diffuse functions are present in your basis set. These can be
added to any “normal” basis set. For example, the following example provides a rather high quality basis for excited
state calculations that is based on the Ahlrichs basis set:
400 6 Detailed Documentation
• If you want to augment a given basis set it is sensible to run a preliminary SCF calculation and use %output
print[p basis] 2 end. This will provide you with a detailed listing of basis functions and their exponents.
You can then add additional s, p and perhaps d-functions with the AddGTO command as in the example above. It
is sensible to decrease the exponent of the diffuse functions by roughly a factor of 3 from the smallest exponent
in the original basis.
Several restrictions apply for range-separated density functionals. They are currently only implemented to work with
the AO-based algorithm within the RIJONX, RIJCOSX, and NORI integral schemes. Moreover, the calculation of
triplet states has been disabled. Additionally, the asymptotic correction (section 6.14.8.6) has been disabled.
In studying Rydberg states one general shortcoming of the present day density functionals becomes particularly
prominent. This is the too fast decay of the DFT potential in the long range limit. This causes the DFT orbital
energies being too positive by several eV. Likewise the excitation energies to Rydberg states are underestimated by
several eV. This can be fixed by using density functionals with improved long range behavior. One such functional is
the LB94 functional. However, the LB94 has the disadvantage of being only defined through the potential and that this
potential is not accurate in the bonding region. Therefore it is reasonable to only correct an existing functional (like
the BP functional) in the long range with the LB94 functional. In ORCA the so-called “gradient regular asymptotic
correction” (GRAC) is implemented and can be applied with any “bulk” density functional in the bonding region.
The energetics and occupied orbital energies are only affected to a minor extent while the virtual orbital energies are
significantly changed and the excitation energies to Rydberg states are improved.
The following example shows how to use the asymptotic correction. The run almost exactly reproduces the results of
Grüning et al. [314] who also developed the method implemented in ORCA.
6.14 Excited States via CIS and TD-DFT 401
#
# Gradient-regulated asymptotic correction calculation
# on the excited states of the CO molecule.
#
# Reference: Grüning et al. (2001) JCP, vol. 114, p. 652
#
! RKS BP NoRI Grid5 NoFinalGrid TightSCF
%method xckernel lda
ldaopt c_vwn5
xckernellda c_vwn5
# *** turn on the asympt. correction
gracLB true
# *** the input ionization potential
# *** in eV !!!
ip 14.01
end
%basis basis vtz
pol Ahlrichs_2df
diff _p
addgto 6
s 1
1 0.01 1.0
p 1
1 0.01 1.0
d 1
1 0.07 1.0
end
addgto 8
s 1
1 0.02 1.0
p 1
1 0.02 1.0
d 1
1 0.1 1.0
end
end
%tddft nroots 10 # no of roots to determine
tda false # Tamm-Dancoff approx
maxdim 100 # max. dim of expansion space
etol -1 # energy tolerance
rtol 1e-5 # residual tolerance
triplets true # generate triplets ?
end
* xyz 0 1
C 0 0 0.00
402 6 Detailed Documentation
O 0 0 1.130
*
From the example two additional inputs are necessary compared to a standard DFT calculation. The first is “gracLB
true” in the method block to turn on the asymptotic correction. The second is “ip 14.01” also in the method block.
The second input is the ionization potential of the molecule in eV and is required for the correction to be meaningful.
If there is no experimental value available you have to calculate the IP first by a ∆SCF calculation before you can run
the TD-DFT!
CAUTION:
• The corrected density functional potentials are not functional derivatives of well defined energy functionals.
Therefore you should not rely on the total energies delivered by these functionals because these are not
variational energies!
ORCA allows the combination the scan feature with CIS or TD-DFT. This can be used to map out the excited
state potential energy surfaces as a function of one- two- or three parameters. The output of the “trajectory” run
automatically contains the excited state energies in addition to the ground state energy. For example consider the
following simple job.
! def2-TZVPD
%method scanguess pmodel # this assignment forces a PModel guess at each step
# which is often better if diffuse functions are present
end
%cis NRoots 7
MaxDim 60
end
%paras rCO = 0.85,1.45,21;
end
* xyz 0 1
O 0 0 0
C 0 0 {rCO}
*
The output file from this job contains the total energies (i.e. the ground state energy plus the excitation energy)
for each excited state as a function of C-O bondlength as shown below. Howerver, the assignment of the individual
states will change with geometry due to curve crossings. Thus, the state-to-state correlation must be worked out ‘by
hand’. These calculations are nevertheless very helpful in obtained at least a rough idea about excited state energy
surfaces.
6.14 Excited States via CIS and TD-DFT 403
Figure 6.7: Result of a potential energy surface scan for the excited states of the CO molecule using
the orca cis module
The ground and excited state potential energy surfaces can also be mapped as a function of normal coordinates. The
normal mode trajectory run is invoked by the keyword !MTR. In addition several parameters have to be specified in
the block %mtr. The following example illustrates the use:
#
! BP86 def2-SV(P) def2-SVP/J TightScf AnFreq
* xyz 0 1
C 0.000001 -0.000000 -0.671602
C 0.000000 0.000000 0.671602
H -0.000000 -0.940772 -1.252732
H -0.000000 -0.940772 1.252732
H -0.000000 0.940772 -1.252732
H -0.000000 0.940772 1.252732
*
and then:
404 6 Detailed Documentation
%tddft
NRoots 3
MaxDim 200
triplets false
end
%mtr
HessName "ethene.hess"
modetype normal
MList 9,13
RSteps 4,5
LSteps 4,5
ddnc 1.0, 0.5
end
* xyz 0 1
C 0.000001 -0.000000 -0.671602
C 0.000000 0.000000 0.671602
H -0.000000 -0.940772 -1.252732
H -0.000000 -0.940772 1.252732
H -0.000000 0.940772 -1.252732
H -0.000000 0.940772 1.252732
*
The HessName parameter specifies the name of the file which contains nuclear Hessian matrix calculated in the
frequency run. The Hessian matrix is used to construct normal mode trajectories. The keyword MList provides the
list of the normal modes to be scanned. The parameters RSteps and LSteps specify the number of steps in positive
an negative direction along each mode in the list. In general, for a given set of parameters
mlist m1,m2,...mn
rsteps rm1,rm2,...rmn
lsteps lm1,lm2,...lmn
the total number of the displaced geometries for which single point calculations will be performed is equal to
Q
(rmi + lmi + 1). Thus, in the present case this number is equal to (4 + 4 + 1) (5 + 5 + 1) = 99.
mi
The ddnc parameter specifies increments δqα for respective normal modes in the list in terms of dimensionless normal
coordinates (DNC’s). The trajectories are constructed so that corresponding normal coordinates are varied in the
range from −lα δqα to rα δqα . The measure of normal mode displacements in terms DNC’s is appropriate choice
since in spectroscopical applications the potential energy function U is usually expressed in terms of the DNC’s. In
particular, in the harmonic approximation U (qα ) has a very simple form around equilibrium geometry:
3N −6
X }ωα 2
U = U0 + qα (6.220)
α
2
6.14 Excited States via CIS and TD-DFT 405
Dimensionless normal coordinate qα can be related to the vector of atomic Cartesian displacements δX as follows:
3N
ω 1 X
α 2 √
qα = Lkα δXk Mk (6.221)
}
k=1
where {Lkα } is the orthogonal matrix obtained upon numerical diagonalization of the mass-weighted Hessian matrix,
and M is the vector of atomic masses. Accordingly, the atomic Cartesian displacements corresponding to a given
dimensionless normal coordinate qα are given by:
1
} 2 1
δXk = Lkα qα (Mk )− 2 (6.222)
ωα
Alternatively, it is possible to specify in the input the Cartesian increment for each normal mode. In such a case,
instead of the ddnc parameter one should use the dxyz keyword followed by the values of Cartesian displacements, for
example:
%mtr
HessName "ethene.hess"
modetype normal
MList 9,13
RSteps 4,5
LSteps 4,5
dxyz 0.01, 0.02 # increments in the Cartesian basis
# are given in angstrom units
end
For a given Cartesian increment dX,α along the α–th normal mode the atomic displacements are calculated as
follows:
dX,α 1
δXk = Lkα (Mk )− 2 (6.223)
kTα k
1
The vector Tα in the Cartesian basis has components Tiα = Lkα (Mk )− 2 and length (norm) kTk k.
The increment length can also be selected on the basis of an estimate for the expected change in the total energy ∆E
due to the displacement according to eq.6.118. The value of ∆E can be specified via the EnStep parameter:
%mtr
HessName "ethene.hess"
modetype normal
MList 9,13
RSteps 4,5
LSteps 4,5
EnStep 0.001, 0.001 # the values are given in Hartree
end
406 6 Detailed Documentation
All quantum chemical methods have to tolerate a certain amount of numerical noise that results from finite convergence
tolerances or other cutoffs that are introduced into the theoretical procedures. Hence, it is reasonable to choose ∆E
such that it is above the characteristic numerical noise level for the given method of calculation.
At the beginning of the program run the following trajectory files which can be visualized in gOpenMol will be
created:
• BaseName.m9.xyz and BaseName.m13.xyz contain trajectories alnong normal modes 9 and 13, respectively.
The results of energy single point calculations along the trajectories will be collected in files BaseName.mtr. escf.S.dat
(for the SCF total energies) and files BaseName.mtr.ecis.S.dat (for the CIS/TDDFT total energies), where “S” in
the suffix of *.S.dat filenames provides specification of the corresponding trajectory in the same way as it was done for
the case of trajectory files *.xyz (e.g. S=’’m9s-1.m13”). Likewise, the calculated along trajectories total energies will
be collected in files BaseName.mtr.emp2.S.dat in the case of MP2 calculations, BaseName.mtr.emdci.S.dat (MDCI),
BaseName.mtr.ecasscf.S.dat (CASSCF), BaseName. mtr.emrci.S.dat (MRCI).
Note, that in principle normal coordinate trajectories can be performed for an arbitrary number normal modes. This
implies that in general trajectories will contain geometries which involve simultataneous displacement along several
(>2) modes. However, trajectory files *.xyz and corresponding *.dat files will be generated only for the structures
which are simultaneously displaced along not more than 2 normal coordinates.
This type of job allows to map PES between two different structures as a function of normal coordinates. The
H2 O molecule represent a trivial case which has formally 2 equivalent equilibrium structures which differ by angle
H1 —O—H2 ( 103.5◦ and 256.5◦ , respectively, as follows from the BP86/SV(P) calculations). In such a case the input
for the nomal mode trajectory run would require the calculation of geometry difference between both structures in
terms of the dimensionless normal coordinates. This can be done in orca vib run as follows :
The second parameter ddnc in the command line invokes the calculation of geometry difference in terms of the DNC’s.
Both structures are specified in the file geom.xyz which has a strict format:
6.14 Excited States via CIS and TD-DFT 407
Figure 6.8: Result of a potential energy surface scan along C-C stretching normal coordinate (mode
13 in the present example) for the excited states of the ethene molecule using the orca cis
module.
2 3
0
0.000000 0.000000 0.000000
0.000000 0.607566 0.770693
0.000000 0.607566 -0.770693
1
0.000000 0.000000 0.000000
0.000000 -0.607566 0.770693
0.000000 -0.607566 -0.770693
The first line of the input specifies the number of the structures and total number of atoms (2 and 3, respectively).
Specification of each structure in sequence starts with a new line containing the number of the structure. The number
0 in the second line is used to denote the reference structure. Note that atomic coordinates should be given in
angstrom units and in the same order as in the ORCA input for the frequency run from which the file water.hess
was calculated.
At the end of the orca vib run the file geom.ddnc is generated. It contains the geometry difference in terms of the
dimensionless normal coordinates between the structures with nonzero numbers and the reference one in geom.xyz :
408 6 Detailed Documentation
1
1 9
0 0.000000
1 0.000000
2 0.000000
3 0.000000
4 0.000000
5 0.000000
6 9.091932
7 -9.723073
8 0.000000
The output file indicates that the structural difference occurs along 2 normal coordinates: 6 (bending mode) and 7
(totally symmetric O—H stretching mode). On the basis of the calculated displacement pattern the following input
for the normal mode trajectory run between two structures can be designed:
%mtr
HessName "water.hess"
modetype normal
mlist 6,7
rsteps 10,0
lsteps 0, 10
ddnc 0.9091932, 0.9723073
end
* xyz 0 1
O 0.000000 0.000000 0.000000
H 0.000000 0.607566 0.770693
H 0.000000 0.607566 -0.770693
*
Here the parameters RSteps, LSteps and ddnc are chosen in such a way that in the scan along modes 6 and 7
the corresponding dimensionless normal coordinates will be varied in the range 0 − 9.091932 and -9.723073 − 0,
respectively, in accordance with the projection pattern indicated in the file geom.ddnc. Note that normal modes are
only defined up to an arbitrary choice of sign. Consequently, the absolute sign of the dimensionless displacements is
ambiguous and in principle can vary in different orca vib runs. It is important that the normal mode scan between
different structures exemplified above is performed using the same sign of normal modes as in the calculation of normal
mode displacements. This condition is fulfilled if the same normal modes are used in orca vib run and trajectory
calculation. Thus, since in orca vib calculation normal modes are stored in .hess file it is necessary to use the same
Hessian file in the trajectory calculation.
6.15 Excited States via ROCIS and DFT/ROCIS 409
The ORCA program package includes the orca rocis module to perform configuration interaction with single excitations
(CIS) calculations using a restricted open-shell Hartee-Fock (ROHF) reference function. It produces excitation energies,
absorption energies and CD intensities. It was designed with the aim to reproduce and - even more importantly -
reliably predict transition metal L-edges as observed in X-ray absorption spectroscopy (XAS).
In the present implementation the orca rocis module is only able to perform CIS calculations on top of a high-spin
ROHF reference function. All spins of the unpaired electrons have to be coupled ferrmoagnetically to give a total
spin of S = 12 N, where N is the number of unpaired electrons. Other ROHF functions such as Zerner’s configuration
averaged or spin averaged ROHF cannot be used as reference. The input for a high spin ROHF calculation is done in
the %scf block.
In our experience ROHF calculations suffer a lot from convergence problems. UHF calculations generally exhibit
better convergence properties. In most cases the quasi-restricted orbitals (qro’s) of a UHF calculation resemble the
ROHF orbitals. Thus the program features the ability to start a ROCIS calculation on top of a UHF calculation. It
will automatically create the qro’s and build the reference determinant with them. If one wants to avoid the (small)
errors that are introduced by this procedure, one may take the qro’s of a UHF calculation as starting orbitals for a
subsequent ROHF calculation. Furthermore it is possible to invoke the orca rocis module for closed shell molecules.
The program will then perform a CI calculation with the provided RHF reference function. In this case it will yield
the same result as the orca cis program.
A number of basic variables in the %rocis block control the settings of the Davidson procedure that is used to solve
the CI problem:
It is recommended to choose the MaxDim variable as a multiple of NRoots. The Default is the lowest possible choice.
In general, by choosing MaxDim ≈ 5-10 times NRoots you will achieve favorable convergence by the cost of an increased
disk space requirement. An increase of the NGuessMat variable to 1024 or 2048 will in most cases also lead to better
convergence of the iterative CI procedure. The amount of output produced during the calculation is controlled via the
PrintLevel variable
410 6 Detailed Documentation
%rocis NRoots 3
MaxDim 15
PrintLevel 3
end
Note, that this does not influence which spectra are calculated or printed. The absorption spectrum calculated on
the basis of the pure dipole approximation for your calculation is always printed. In addition, it is possible to allow
for electric quadrupole and magnetic dipole contributions to the absorption spectrum as well as to calculate the CD
spectrum:
%rocis NRoots 6
MaxDim 50
DoQuad true #invokes calculation of electric
#quadrupole and magnetic dipole
#contributions
DoCD true #invokes the calculation of the CD
#spectrum
end
-----------------------------------------------------------------------------
ABSORPTION SPECTRUM VIA TRANSITION ELECTRIC DIPOLE MOMENTS
-----------------------------------------------------------------------------
State Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (au**2) (au) (au) (au)
-----------------------------------------------------------------------------
1 2635.0 3795.1 0.000000001 0.00000 0.00001 -0.00001 0.00029
2 4365.5 2290.7 0.000011416 0.00086 0.01200 -0.00864 0.02534
3 4368.2 2289.3 0.000011174 0.00084 -0.02006 0.01442 0.01523
4 5977.9 1672.8 0.000093897 0.00517 -0.04164 -0.05863 0.00000
5 65245.3 153.3 0.027669631 0.13961 -0.20555 -0.31203 -0.00023
-----------------------------------------------------------------------------
ABSORPTION SPECTRUM VIA TRANSITION VELOCITY DIPOLE MOMENTS
-----------------------------------------------------------------------------
State Energy Wavelength fosc P2 PX PY PZ
(cm-1) (nm) (au**2) (au) (au) (au)
-----------------------------------------------------------------------------
1 2635.0 3795.1 0.000000085 0.00000 -0.00000 0.00000 -0.00004
2 4365.5 2290.7 0.001777771 0.00005 -0.00315 0.00223 -0.00618
3 4368.2 2289.3 0.001850956 0.00006 0.00526 -0.00372 -0.00371
4 5977.9 1672.8 0.003237195 0.00013 0.00667 0.00937 0.00000
5 65245.3 153.3 0.057301314 0.02555 0.08779 0.13358 0.00010
-------------------------------------------------------------------
CD SPECTRUM
-------------------------------------------------------------------
State Energy Wavelength R MX MY MZ
(cm-1) (nm) (1e40*sgs) (au) (au) (au)
6.15 Excited States via ROCIS and DFT/ROCIS 411
-------------------------------------------------------------------
1 2635.0 3795.1 0.00007 -0.00511 -0.01539 0.00021
2 4365.5 2290.7 10.02484 0.57434 -0.40490 0.42899
3 4368.2 2289.3 -10.03730 0.34432 -0.24269 -0.71470
4 5977.9 1672.8 0.01537 -0.00033 -0.00032 -0.00286
5 65245.3 153.3 -0.00865 0.00004 0.00003 -0.00005
-----------------------------------------------------------------------------------------------------
COMBINED ELECTRIC DIPOLE + MAGNETIC DIPOLE + ELECTRIC QUADRUPOLE SPECTRUM
-----------------------------------------------------------------------------------------------------
State Energy Wavelength D2 M2 Q2 D2+M2+Q2 D2/TOT M2/TOT Q2/TOT
(cm-1) (nm) (*1e6) (*1e6)
-----------------------------------------------------------------------------------------------------
1 2635.0 3795.1 0.00000 0.00011 0.00000 0.00000000080469 0.86010 0.13938 0.00052
2 4365.5 2290.7 0.00001 0.47866 0.00000 0.00001189497194 0.95976 0.04024 0.00000
3 4368.2 2289.3 0.00001 0.48629 0.00000 0.00001166062671 0.95830 0.04170 0.00000
4 5977.9 1672.8 0.00009 0.00001 0.00001 0.00009389664707 1.00000 0.00000 0.00000
5 65245.3 153.3 0.02767 0.00000 0.06183 0.02766969236508 1.00000 0.00000 0.00000
-----------------------------------------------------------------------------------------------------
COMBINED ELECTRIC DIPOLE + MAGNETIC DIPOLE + ELECTRIC QUADRUPOLE SPECTRUM (origin adjusted)
-----------------------------------------------------------------------------------------------------
State Energy Wavelength D2 M2 Q2 D2+M2+Q2 D2/TOT M2/TOT Q2/TOT
(cm-1) (nm) (*1e6) (*1e6)
-----------------------------------------------------------------------------------------------------
1 2635.0 3795.1 0.00000 0.00000 0.00000 0.00000000069409 0.99716 0.00016 0.00268
2 4365.5 2290.7 0.00001 0.38277 0.00039 0.00001179947536 0.96753 0.03244 0.00003
3 4368.2 2289.3 0.00001 0.36798 0.00045 0.00001154275975 0.96808 0.03188 0.00004
4 5977.9 1672.8 0.00009 0.00000 0.00001 0.00009389663928 1.00000 0.00000 0.00000
5 65245.3 153.3 0.02767 0.00003 0.06176 0.02766969232228 1.00000 0.00000 0.00000
If calculations on large molecules are conducted, the integral transformation will be the most time-consuming part.
Therefore it is strongly recommended to use the resolution of the identity (RI) approximation in those cases. It
effectively reduces the computational costs of the transformation step by only introducing minor errors to the
calculation. It has to be kept in mind that in order to keep the introduced errors small, one has to provide a reasonable
auxiliary basis sets along with your normal basis set input.
%ROCIS NROOTS 5
MaxDim 35
DoRI true # invokes the RI approximation
DoQuad true
end
412 6 Detailed Documentation
* xyz 0 2
N 0 0 0
O 0 0 1.15
*
The orca rocis module provides two ways of choosing the orbital excitation space: By orbital energy or orbital number.
In the former case an energy window has to be specified and the program will then take all orbitals, whose orbital
energies lie within this window, into account. Note, that one actually has to define two orbital windows: One for the
donor and the second for the acceptor orbital. The input of the windows is done as an array: The first two numbers
define the donor space while the last two numbers define the acceptor space.
%rocis NRoots 3
MaxDim 15
EWin = -5,5,-5,5
end
The default is to keep core orbitals and very high lying virtual orbitals out of their respective orbital excitation spaces.
Since these orbitals span a space that is usually not reachable with regular UV/Vis spectroscopy, this is a reasonable
approximation. One has to keep in mind that an orbital energy window makes only sense if the orbitals used in
the calculation have a well-defined orbital energy. As a consequence one cannot use an orbital energy window for a
calculation with localized orbitals. The second way to specify the excitation space is by orbital numbering.
%rocis NRoots 3
MaxDim 15
OrbWin = 1,13,9,22
end
In restricted calculations only one set of spatial orbitals is created. Hence it is not necessary to provide orbital windows
for alpha and beta electrons separately. Of course, only doubly or singly occupied orbitals can act as donor orbitals
and only singly and nonoccupied orbitals can act as acceptor orbitals. The program recognizes nonoccupied orbitals
in the donor space and doubly occupied orbitals in the acceptor space and removes both.
The many-electron expansion space of a ROCIS calculation in ORCA is divided into five classes. Using second
quantized replacement operators Epq = â↑qα âpα + â↑qβ âpβ they take the form [315].
The orbital label ‘i’ denotes a doubly occupied orbital, ‘s’ and ‘t’ refer to singly occupied orbitals and orbital label ‘a’
corresponds to a virtual orbital. The form of the excitation classes ensures that all excited states are eigenfunctions of
the Ŝ 2 -operator and have the same total spin S as the electronic ground state. Each of the five excitation classes can
be switched on or off manually.
6.15 Excited States via ROCIS and DFT/ROCIS 413
%rocis NRoots 3
MaxDim 15
Do_is true #Include DOMO->SOMO excitations
Do_sa true #Include SOMO->Virtual excitations
Do_ia true #Include DOMO->Virtual excitations
Do_ista true #Include DOMO->SOMO coupled to
#SOMO->Virtual excitations with #s not equal t
Do_isa true #Include DOMO->SOMO coupled to
#SOMO->Virtual excitations with #s = t
#---------------------------------
#by default all switches for the
#excitation classes are set to
#’true’
#---------------------------------
end
at
Formally, the |Φas
ti i and Φti
excitation classes can be regarded as double excitations. When the program finished
the ROCIS calculation it gives the excitation energy together with the composition for each root. According to the
number of labels of the respective functions |Φi, contributions from excited configuration state functions belonging to
the different excitation classes are given by two, three or four numbers.
Furthermore the orca rocis module is able to calculate the effect of spin-orbit coupling (SOC) on the calculated ground
and excited states. It introduces SOC in the framework of quasi-degenerate perturbation theory (QDPT). The SOC
Hamiltonian is diagonalized in the basis of the calculated ROCIS states ΨSM
I , where I is the root label and S and M
are the spin and magnetic spin quantum numbers, respectively [316], [315].
%rocis NRoots 3
MaxDim 15
OrbWin = 1, 3 ,9 ,22
414 6 Detailed Documentation
After the SOC calculation the program will produce additional spectra for the SOC corrected results. The spectra
contain transitions from the 2S+1 lowest lying states into all excited states, where S is the spin quantum number
of the electronic ground state. These 2S+1 lowest states may be split up in the order of 1-100 cm−1 . Due to the
small magnitude of the splitting, all of the 2S+1 states can be significantly populated even at low temperatures.
Experimentally, the intensity of a given transition is dependent on the population of the corresponding initial state.
With the SOCTemp keyword the population of the theoretically calculated states can be manipulated by the varying the
fictive temperature of the system. It has to be mentioned that the electric quadrupole transitions between spin-orbit
coupled states are not well defined and are likely to give unreasonable results. Hence it is recommended to use the
DoQuad keyword only for calculations that do not include SOC.
-------------------------------------------------------------------------------
SPIN ORBIT CORRECTED ABSORPTION SPECTRUM VIA TRANSITION ELECTRIC DIPOLE MOMENTS
-------------------------------------------------------------------------------
States Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (au**2) (au) (au) (au)
-------------------------------------------------------------------------------
0 1 5.6 0.0 0.000000000 0.00000 0.00003 0.00002 0.00000
0 2 6.2 0.0 0.000000000 0.00000 0.00000 0.00000 0.00005
0 3 23.7 422287.3 0.000000000 0.00000 0.00000 0.00000 0.00000
0 4 23.7 421562.8 0.000000000 0.00000 0.00018 0.00025 0.00000
0 5 2621.7 3814.3 0.000000000 0.00000 0.00000 0.00001 0.00005
0 6 2622.0 3813.9 0.000000000 0.00000 0.00003 0.00012 0.00000
0 7 2634.7 3795.5 0.000000095 0.00002 0.00388 0.00273 0.00049
0 8 2634.9 3795.2 0.000000103 0.00002 0.00039 0.00027 0.00495
0 9 2639.5 3788.6 0.000000001 0.00000 0.00001 0.00001 0.00036
0 10 4223.6 2367.6 0.000000103 0.00002 0.00043 0.00029 0.00390
0 11 4223.9 2367.5 0.000000120 0.00002 0.00348 0.00236 0.00046
0 12 4296.3 2327.6 0.000000696 0.00010 0.00562 0.00842 0.00000
0 13 4357.6 2294.8 0.000000002 0.00000 0.00001 0.00001 0.00049
0 14 4418.1 2263.4 0.000005778 0.00083 0.00653 0.00468 0.02762
0 15 4422.1 2261.4 0.000005517 0.00079 0.02184 0.01559 0.00832
0 16 4488.2 2228.0 0.000000001 0.00000 0.00004 0.00006 0.00038
0 17 4524.2 2210.3 0.000000001 0.00000 0.00030 0.00018 0.00000
0 18 4597.2 2175.2 0.000000027 0.00000 0.00023 0.00016 0.00191
0 19 4597.4 2175.2 0.000000051 0.00001 0.00213 0.00153 0.00023
0 20 6043.6 1654.6 0.000047989 0.00502 0.04104 0.05779 0.00000
0 21 6049.5 1653.0 0.000000014 0.00000 0.00109 0.00057 0.00001
0 22 6051.3 1652.5 0.000000021 0.00000 0.00001 0.00004 0.00150
0 23 6069.7 1647.5 0.000000000 0.00000 0.00005 0.00007 0.00000
0 24 6069.9 1647.5 0.000000028 0.00000 0.00098 0.00138 0.00000
0 25 65281.7 153.2 0.014223474 0.13787 0.20423 0.31010 0.00023
0 26 65281.7 153.2 0.000000035 0.00000 0.00032 0.00048 0.00011
0 27 65281.7 153.2 0.000009000 0.00009 0.00522 0.00774 0.00001
0 28 65281.7 153.2 0.000007207 0.00007 0.00460 0.00698 0.00000
0 29 65281.7 153.2 0.000047448 0.00046 0.01179 0.01791 0.00001
1 2 0.6 0.0 0.000000000 0.00000 0.00001 0.00001 0.00000
1 3 18.1 553477.5 0.000000000 0.00000 0.00000 0.00000 0.00009
1 4 18.1 552233.6 0.000000000 0.00000 0.00006 0.00004 0.00000
1 5 2616.1 3822.5 0.000000063 0.00001 0.00006 0.00003 0.00261
6.15 Excited States via ROCIS and DFT/ROCIS 415
If the PrintLevel value is set to 3 or higher, the program will print out the composition of the SOC corrected states
in the basis of states ΨSM
I .
Further details of the SOC calculation such as the procedure of SOC integral calculation can be controlled via the
%rel block (section 6.12.
The orca rocis program was designed to calculate transition metal L-edge spectra of large molecules as they are
observed in X-ray absorption spectroscopy (XAS). An L-edge results when an electron is promoted from the 2p shell of
a transition metal ion into the valence d-shell by an X-ray photon. Strong spin-orbit coupling in the 2p shell and p-d
coupling phenomena complicate the interpretation and even more so the prediction of these spectra. It has to be kept
in mind that the present program applies a variety of approximations which might lead to observable deviations from
experimentally determined spectra. However, we believe that the results obtained from the program are in general
qualitatively correct and in most cases accurate close to the experimental uncertainty. In cases where quantitative
accuracy is not met, the provided results might still give some insight into the mechanisms of intensity distribution in
the spectra.
The special input structure for orbital windows described in 6.15.1 allows the user to restrict the donor orbital space
to the transition metal 2p shell. The acceptor orbital space is the same as in regular UV/Vis spectroscopy. It should
include all singly occupied molecular orbitals and as many virtual orbitals as one can afford in the calculation. The
number of roots should be chosen large enough so that at least all 2p-3d single excitations are calculated. In many
cases even more roots are required since doubly excited or charge transfer states may become important. Moreover the
strong SOC apparent in the 2p shell of transition metal ions necessitates the additional calculation of excited states
with a total spin of S’ = S + 1 and S’ = S -1 where S is the total spin of the electronic ground state. Accordingly four
416 6 Detailed Documentation
additional excitation classes introduce excited configuration state functions with a lower and higher spin multiplicity.
They feature the second quantized spin raising and lowering operators Ŝpq +
= â↑qα âpβ , Ŝpq
−
= â↑qβ âpα .
SOM
(t−)
E q
0 +1 − PO − t
= 2S S |0i − √ 1 √ 1 S E |0i
0 uu i
Φi ti 0 0
2S +2 2S +1 2S +2
u6=t
SOM O
E q
(t−) 0
2S +1 −
P 1 1 − t
Φi = 2S 0 +2 Sti |0i − √
0
√
2S +1 2S +2 0 S uu E i |0i
E q
u6=t
SOM O q S0 = S − 1
(a−) 2S 0 +1 −
= 2S 0 +3 Sai |0i −
P (S 0 +1)2 −S 02
√ 1 − a
S Ei |0i
(6.225)
Φi (S 0 +1)(2S 0 +3) 2(2S 0 +2) tt
t
SOM
POq 2
q
1 − − +
+ 0 0
(2S +2)(2S +3) 0 0 S
(2S +2)2(2S +1) tt uu ai
S S |0i
t,u6=t +E o
+
|0i S 0 = S + 1
a
Φi = Sai
Inclusion of configuration state functions with higher or lower multiplicity is invoked with the keywords DoLowerMult
and DoHigherMult, respectively.
%rocis NRoots 20
MaxDim 50
SOC true
DoRI true
PrintLevel 3
DoLowerMult true #Invokes a CI calculation #with S’=S-1
DoHigherMult true #Invokes a CI calculation #with S’=S+1
OrbWin = 6,8,0,2000
end
The program will conduct a separate Davidson procedure for each multiplicity. Subsequently it gives the excitation
energies and compositions of the calculated excited states for all included multiplicities. After all CI calculations are
finished, the program gives a list of all calculated roots with their excitation energies and their multiplicities. It is this
number that will be referred to as label ’I’ in the decomposition of spin-orbit coupled states in the basis ΨSM
I . It is
very important to note, that when states with different multiplicities are calculated this number might deviate from
the number that appears in the respective CI part of the output. If one gets confused about the numbering of the
states, the state energies might act as a guideline through the output of the program.
Without SOC the spin exclusion rule applies which means that only excited states with a total spin equal to the groun
d state spin (S’ = S) give rise to non-vanishing intensities. Hence, only these transitions are listed in the spectra
before SOC.
--------------------------------------------------------------------------------
ROOT Mult Excitation energy[Eh] [cm-1] [eV]
--------------------------------------------------------------------------------
0 5 0.00000000 0.00 0.000
1 5 26.24822856 5760820.28 714.251
2 5 26.24833619 5760843.90 714.254
3 5 26.27159871 5765949.43 714.887
4 5 26.27982129 5767754.08 715.110
5 5 26.30321870 5772889.22 715.747
6 5 26.30458669 5773189.46 715.784
7 5 26.33143414 5779081.79 716.515
8 5 26.33600432 5780084.83 716.639
6.15 Excited States via ROCIS and DFT/ROCIS 417
...
------------------------
ROCIS-EXCITATION SPECTRA
------------------------
-----------------------------------------------------------------------------
ABSORPTION SPECTRUM VIA TRANSITION ELECTRIC DIPOLE MOMENTS
-----------------------------------------------------------------------------
State Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (au**2) (au) (au) (au)
-----------------------------------------------------------------------------
1 5760820.3 1.7 0.000985130 0.00006 0.00612 -0.00434 0.00011
2 5760843.9 1.7 0.000777158 0.00004 -0.00008 0.00006 0.00666
3 5765949.4 1.7 0.000000036 0.00000 0.00000 0.00001 -0.00004
4 5767754.1 1.7 0.000007564 0.00000 0.00033 0.00057 -0.00000
5 5772889.2 1.7 0.025379335 0.00145 -0.00031 0.00021 -0.03804
6 5773189.5 1.7 0.026898175 0.00153 0.03203 -0.02254 -0.00039
7 5779081.8 1.7 0.000000323 0.00000 -0.00006 -0.00009 -0.00008
8 5780084.8 1.7 0.001711738 0.00010 -0.00572 -0.00805 0.00001
418 6 Detailed Documentation
After calculation of SOC in the basis of all calculated ROCIS roots, the program prints out the composition of the
spin-orbit coupled states (if PrintLevel >2) and the corresponding absorption spectrum.
-------------------------------------------------------------------------------
SPIN ORBIT CORRECTED ABSORPTION SPECTRUM VIA TRANSITION ELECTRIC DIPOLE MOMENTS
-------------------------------------------------------------------------------
States Energy Wavelength fosc T2 TX TY TZ
(cm-1) (nm) (au**2) (au) (au) (au)
-------------------------------------------------------------------------------
0 1 0.0 0.0 0.000000000 0.00000 0.00000 0.00000 0.00000
0 2 0.8 0.0 0.000000000 0.00000 0.00000 0.00000 0.00000
0 3 0.8 0.0 0.000000000 0.00000 0.00000 0.00000 0.00000
0 4 1.0 0.0 0.000000000 0.00000 0.00000 0.00000 0.00000
0 5 5729330.4 1.7 0.000080556 0.00002 0.00013 0.00009 0.00464
0 6 5729330.4 1.7 0.000096984 0.00003 0.00415 0.00295 0.00013
0 7 5731365.3 1.7 0.000000001 0.00000 0.00001 0.00000 0.00000
0 8 5731365.4 1.7 0.000000000 0.00000 0.00000 0.00000 0.00001
0 9 5733452.5 1.7 0.000058329 0.00002 0.00323 0.00227 0.00004
0 10 5733477.2 1.7 0.000066389 0.00002 0.00003 0.00002 0.00421
0 11 5734964.4 1.7 0.000000034 0.00000 0.00005 0.00007 0.00004
0 12 5737151.2 1.7 0.000047769 0.00001 0.00208 0.00291 0.00000
With the aid of the orca mapspc program it is possible to extract a .plt file from the printed spectra, which then can
be used to generate a plot of the intensity vs the excitation energy. The orca mapspc program applies Gaussian type
lineshape functions to the calculated transitions with a user-defined FWHM. One has to provide several informations
for the program such as the name of the output file, the type of spectrum you wish to plot, the energy range and the
like. It is invoked in the command line and the parameters are given as arguments:
The first argument has to be the output file of your calculation followed by the type of spectrum that should be
plotted. In the case of transition metal L-edges it is an absorption spectrum after the SOC correction. The arguments
6.15 Excited States via ROCIS and DFT/ROCIS 419
‘-eV’ (use electron Volt as energy unit), ‘-w1’ (FWHM = 1eV), ‘-n3000’ (use 3000 grid points), ‘-x0710’ and ‘-x1740’
(energy range: 710 to 740 eV) have to be adapted to the specific calculation. As a result, one obtains a .plt and
a .stk file. The .plt file contains five columns. In the first column one finds the energy and in the second the
total intensity. Columns three to five contain the x-,y- and z-components of the transition moment. Note, that the
distribution of the transition moment among its spatial components depends on the orientation of your molecular axis
system. The .stk file contains a list of all transitions with their respective transition energy and intensity. A more
detailed description of the orca mapspc program and its usage can be found in chapter 6.24.1.
Figure 6.9: Comparison of the experimentally observed (black) and calculated ROCIS (red) Fe L-
edge of [FeCl4 ]2− . The red bars highlight the contribution of individual states to the
total spectrum. The calculation was performed using the TZVP basis set.
For many transition metal compounds the description of the electronic ground and excited states by Hartree-Fock
theory and CIS is of rather poor quality. Especially covalency and relative spin state energetics are not reproduced
correctly. This in turn might lead to wrong intensity distributions in the calculated L-edge spectra. In the majority
of these cases the quality of the description and hence the predicted L-edge spectra can be significantly improved
with the DFT/ROCIS method [315]. It features the usage of a restricted open-shell Kohn-Sham matrix as reference
and also uses the DFT orbitals for setting up the excited configuration state functions in the CI expansion. The two
electron integrals that include the DFT orbitals are scaled according to their nature and their position in the CI
matrix by the parameters c1 , c2 and c3 . They all lie in the interval [0;1]. Parameters c1 and c2 scale coulomb- and
exchange- like terms in the diagonal part of the CI matrix, whereas c3 reduces the size of all off-diagonal elements of
the CI matrix. For example:
The three default parameters c1 = 0.21, c2 = 0.49 and c3 = 0.29 have been optimized for a test set of molecules and
their excited states on a B3LYP/def2-TZVP(-f) level of theory but can be freely chosen [315]. It is most likely that
for a different combination of test molecules, functional and basis set, a different set of parameters gives better results.
Since the parameters are chosen with regard of a good ”balance” between orbital energies, coulomb and exchange
integrals, a new set of parameters should at least crudely resemble their relative proportions.
%ROCIS NRoots 20
MaxDim 200
DoRI true
SOC true
DoHigherMult true
PrintLevel 3
OrbWin = 5,7,50,60
DoDFTCIS true #switches on the #DFT/ROCISS method
DFTCIS_c = 0.21, 0.49, 0.29 #Array input of the #three parameters
end
Figure 6.10: Comparison of the experimentally observed (black) and calculated (red) Ti L-edge of
[Cp2 TiCl2 ]. The red bars highlight the contribution of the individual states to the
total spectrum. The pure ROCIS method (left) predicts a wrong L3 -L2 intensity ratio
and strongly overestimates the splitting of the satellite features to the main bands.
Better results are obtained with the DFT/ROCIS method (right).
%rocis
#-----------------------------------------------------------
# GENERAL KEYWORDS
#-----------------------------------------------------------
NRoots 3 #The number of desired roots
MaxDim 15 #Maximum dimension of the
#expansion space in the Davidson procedure
MaxIter 35 #Maximum CI Iterations
NGuessMat 500 #The dimension of the guess matrix
ETol 1e-6 #Energy convergence tolerance
RTol 1e-6 #Residual Convergence tolerance
MaxCore 2000 #Maximum memory used during the calculation in MB
EWin= -5,5,-5,5 #Energy Window that defines orbital excitation space
OrbWin=6,8,0,2000 #Orbital Window that defines orbital excitation space
#(overrides EWin)
DoRI false #Switch for the RI approximation
DoLoc false #Switch for localization of Donor orbital space
LocMet PipekMezey #chooses the localization method:
6.15 Excited States via ROCIS and DFT/ROCIS 421
#PipekMezey or FosterBoys.
#Abbreviations "PM" and "FB"
#are equivalent to full names.
SOC false #Switch for inclusion of SOC
SOCTemp 10 #The fictive temperature for the
#SOC corrected spectra
DoDFTCIS false #Switch for the DFT/ROCIS method
DFTCIS_C = 0.21, 0.49, 0.29 #Array Input of the
#three DFT/ROCIS parameters
#-----------------------------------------------------------
# FLAGS FOR EXCITATION SPACES
#-----------------------------------------------------------
Do_is true #Include DOMO->SOMO excitations
Do_sa true #Include SOMO->Virtual excitation
Do_ia true #Include DOMO->Virtual excitations
Do_ista true #Include DOMO->SOMO excitations
#coupled to SOMO->Virtual
#excitations with s not equal t
Do_isa true #Include DOMO->SOMO excitations
#coupled to SOMO->Virtual
#excitations with s = t
#-----------------------------------------------------------
OUTPUT KEYWORDS
#-----------------------------------------------------------
PrintLevel 3 #Controls the amount of output
#produced during the calculation
DoCD false #Invokes the calculation of CD spectra
DoQuad false #Invokes the calculation of
#electric quadrupole and magnetic
#dipole contributions to the
#calculated spectra
PlotDiffDens = 1,2 #Array input for plotting
#difference densities of CI roots
#1 and 2 to the ground state.
PlotSOCDiffDens=1,2 #Array input for plotting
#difference densities of SOC
#states 1 and 2 to the ground state
Weight_Thresh 0.01 #Threshold for contributions to CI
#and SOC states to be printed
422 6 Detailed Documentation
The EOM-CCSD routine is part of the orca mdci module of the ORCA program package. It is called after a successful
coupled cluster calculation if the appropriate flags and the number of roots have been set. In the following chapter
the general program flow and all input parameters of the EOM routine will be described in detail (for typical use, see
5.6).
R|ΨCC i, (6.227)
i.e. via the action of a linear excitation operator R on the coupled cluster ground state wave function ΨCC . In the
beginning, the coupled cluster amplitudes are given from the previous CCSD calculation, and our task is to obtain
R. Note that since the CC Hamiltonian is nonsymmetric, a left hand solution (L) would also be needed to evaluate
properties. For excitation energies however, it is enough to obtain the right hand solutions (R). In principle this is
done by building the Hamiltonian and diagonalizing it in order to obtain energy expectation values.
In practice the size of the CCSD Hamiltonian matrix is prohibitively large, and thus various methods have been
devised to obtain its lowest few eigenvalues and eigenstates. One of the most popular of these is the Davidson method,
which can be summarized as follows:
• Diagonalize H: E = U T HU.
• Check if adding new trial vectors would exceed the maximum number of trial vectors:
The advantage of the above method is that instead of the full Hamiltonian, only the sigma vectors have to be explicitly
evaluated and stored. Below are all the parameters that influence the EOM routine. In the following sections, these
parameters will be explained following the solver algorithm described above.
6.16 Excited States via EOM-CCSD 423
%mdci
#EOM parameters - defaults displayed
DoEOM false # whether to perform EOM
UseEOMOptS true # use optimized sigma routines for singles
UseEOMOptD true # use optimized sigma routines for doubles
NDav 20 # maximum size of reduced space (i.e. 20*NRoots)
CheckEachRoot true # check convergence for each root separately
RootHoming true # apply root homing
DoLanczos false # use the Lanczos procedure rather than Davidson
UseCISUpdate true # use diagonal CIS for updating
NInitS 0 # number of roots in the initial guess, if 0, use preset value
#keywords which affect EOM parameters, but do not belong to the routine itself
NRoots 9 # number of roots
STol 1e-5 # default for CC residual threshold - for EOM 1e-8<=STol!
OTol 1e-14 # orthogonalization threshold
KCOpt KC_MO # method for external exchange formation
PrintLevel 3 # the amount of information to be printed
MaxCore 500 # working memory
MaxCoreIntAmp 500 # memory for integrals and amplitudes
end
The most important data coming from the coupled cluster routine are the ground state energy and wave function,
and the molecular integrals. The integrals are then used to create “dressed” integral containers, which allows for an
efficient factorization of the EOM equations, since these dressed quantities do not change during the calculation. Most
of these are written on disk, with the possible exception of the integral container which has three external labels. This,
and the solver files may remain in core if enough memory is available. The program sequentially tries to allocate
memory for the files in the order of their importance, and what cannot be kept in core, goes on disk. The order of
allocation is residual vectors, Ritz vectors, three external integrals, sigma vectors, state (trial) vectors, as seen in the
example below:
--------------------------------
AUTOMATIC CHOICE OF INCORE LEVEL
--------------------------------
The sum of memory specified with keywords MaxCore and MaxCoreIntAmp is distributed among the five candidates, in
the above case everything fits in. Note that these are only the largest contributors to memory consumption, and there
should ideally be a safety margin when allocating memory.
424 6 Detailed Documentation
In order to estimate the amount of necessary memory, it should be kept in mind that the memory requirements of the
residual and Ritz vectors are proportional to NR NP NV2 , the three external integrals to NR NO NV3 and the sigma and
trial vectors to ND NR NP NV2 , where NO and NV are the number of occupied and virtual orbitals, NP = NO (NO + 1)
is the number of occupied pairs, NR is the number of roots, and ND is the maximum size of the reduced space. The
keyword NRoots sets NR , while NDav determines ND . Luckily, the contributions that in our experience are the most
important to keep in memory, are also the ones that require the smallest amount of it.
The present initial guess consists of constructing a CIS Hamiltonian of a certain dimension, and diagonalizing it. The
roots are preselected based on the energetic order of the diagonal elements of the Hamiltonian. The number of roots
in the initial guess is determined as 20 times the number of roots desired in EOM (NRoots) if NDav is 20 or smaller,
otherwise it is set to NDav times the number of EOM roots. In the parameters NInitS is larger than zero, than the
number of initial guess roots will be set to this parameter times NRoots. The maximum possible number of roots if
the full CIS dimension, NO NV . One should keep in mind while increasing the number of initial guess vectors that it
corresponds to diagonalizing a matrix of increasing dimensions. If for example NRoots is 10, then by default 200 roots
are considered in the initial guess (unless it exceeds the size of the CIS space), or if NInits is set to 100, then there
will be 1000 roots in the guess. In some cases, the roots calculated using EOM may not be the lowest ones, but a
few of these may be replaced by some higher root “easier” to find. In such cases, it may help to increase NRoots or
NInitS to converge to the proper roots.
The Hamiltonian construction starts with calling the sigma routines. The logical variables UseEOMOptS and UseEOMOptD
choose the routines to be used to evaluate the singles and doubles sigma vectors, respectively. If true, the optimized
sigma routine using dressed integrals will be used. This should not be changed, the option is there mainly for debugging
purposes. If set to false, an automatically generated, and much slower serial code will be used instead. The most
time consuming part of the sigma vector construction, the formation of the external exchange, can be influenced via
the CC keyword KCOpt. Currently, there are two options compatible with EOM: KC MO and KC AOX (see the MDCI
documentation). In each early iteration NR sigma vectors will be determined, except after restart, in which case the
number of sigma vectors is 2NR . For further details on convergence, see 6.16.6 below.
Once the sigma vectors are available, they are multiplied with the trial vectors to yield the reduced space Hamiltonian.
The Hamiltonian is built in a way that in each iteration only the new vector products are added to the “edge” of
the old Hamiltonian, so that a full build is avoided. It should be clear that the parameter NDav plays an important
role here, since it determines the maximum size of the Hamiltonian (ND NR ), and also controls how much memory
is needed for the trial and sigma vectors, as seen above. Since the choice of this parameter influences convergence
properties, it will be discussed further in 6.16.6.
Following the construction of the Hamiltonian, a nonsymmetric eigensolver is called. In this case, it is possible to have
complex eigenvalues. In practice, this is rarely the case, and indicates a problem of some kind. A warning will be
given if this happens, however, one may get away with this if it only happens in an isolated iteration step.
Once the eigenvectors are available, they are compared to those of the previous iteration, if root homing is turned
on, i.e. if the RootHoming keyword is set to true. This means evaluating the overlap of the old and new eigenvectors,
in order to keep track of the possible movement of the eigenvectors if root flipping occurs. If a global convergence
6.16 Excited States via EOM-CCSD 425
threshold is applied in a procedure where the lowest eigenvalues are desired, this is not necessary, since all intermediates
are overwritten in each iteration, which automatically keeps track of such changes. However, if converged roots are
removed from further iterations (see next section), it is important to keep track of changes in ordering, especially
if a converged and a non-converged root is swapped. After diagonalization, the Ritz vectors and residuals can be
evaluated.
Convergence is signaled once a residual square norm based criteria is fulfilled. What this criteria is, is determined
by the CheckEachRoot keyword. If it is true (default) the convergence of the residual square norm of each root is
checked separately. This is due to the fact that different roots converge at a different rate. Once a root is converged,
no new trial vectors will be generated belonging to that vector. This means that the EOM iterations will progressively
become faster (until restart). Turning off rootwise convergence check is possible, but not recommended. In this case,
the maximum of all residual square norms is checked for convergence, and iterations will take the same amount of
time since no vectors are removed in any iteration. This procedure may however be numerically unstable, since the
residuals of some roots may become very close to zero, and trying to generate new vectors orthogonal to these may
lead to numerical disaster. In short, the recommended default is having both CheckEachRoot and RootHoming set to
true. If CheckEachRoot is false, then so should be RootHoming, as it may cause problems if NDav is too small. The
convergence threshold is set to 0.1 times the CC residual threshold, STol, except that it cannot be lower than 1e-8.
At this point it is worth discussing the role of the keyword NDav. This keyword determines at what point the Davidson
algorithm should be restarted. If it is chosen too small, it may cause slow convergence. A too large value may result in
overwhelming demands on memory/disk space requirements. The default value (20) is chosen with the hope that no,
or maybe one restart will be required. It should only be changed if computational resources so demand it. At restart,
Ritz vectors are copied as new trial vectors for all roots, which then will be orthonormalized, while new vectors will
only be generated for the non-converged roots. This means that the step after the rebuilding of the expansion space
will be 1-2 times as expensive as one of the initial steps.
New directions (trial vectors) are generated from the preconditioned residual vectors. If no preconditioning is applied
(the preconditioner is taken to be a unit matrix), one falls back to the Lanczos algorithm, which the Davidson algorithm
can be considered an improvement of. This happens if the keyword DoLanczos is true. This is not recommended, as
the Lanczos algorithm converges several times slower than Davidson’s, and is there for debugging mainly. The original
Davidson preconditioner was the inverse of a diagonal matrix which contained the difference of the diagonal elements
of the Hamiltonian and the current approximation to the eigenvalue belonging to the given root. If Ria and Rijab is
an element of the singles and doubles amplitudes, respectively, than this means in practice that the updated vectors
(Tia , Tijab ) have the form
Ria
Tia = (6.228)
Dia + ER
Ria
Tijab = (6.229)
Dijab + ER
for doubles. Here, Dia and Dijab are related to and possibly approximations of the respective diagonal Hamiltonian
elements. The simplest approximation can be just to construct these from diagonal Fock matrix elements (i.e. orbital
energies) as Dia = εa − εi and Dijab = εa + εb − εi − εj . A slightly better preconditioning can be obtained as
follows. For singles, take the exact CIS diagonal elements, Dia = εa − εi + g iiaa , where the last term is the respective
426 6 Detailed Documentation
antisymmetrized integral; and construct the doubles as Dijab = Dia + Djb . This is the default, and can be changed
back to the simple Fock matrix guess by setting UseCISUpdate to false.
Following the preconditioning step, the resulting vectors are orthogonalized to the previous set of trial vectors, and
orthonormalized among themselves. Since until restart the trial vectors do not change once they are generated, only
the new elements of the overlap matrix need to be generated for the orthonormalization. The threshold for numerical
threshold during the inversion (and other division steps) is controlled by the parameter OTol. Finally, the amount of
printed information can be controlled via the PrintLevel keyword. If not given or equal to 2, only basic iteration
information will be printed. If set to 3, detailed iteration information will be printed (recommended if timing results
for individual steps are required), while 4 or higher triggers additional (and very verbose) information from other
subroutines as well.
The detailed documentation of all features of the MR-CI and MR-PT module is somewhat premature and at this
point only a summary of keywords is given below. A thorough description of all technical and theoretical subtleties
must wait for a later version of the manual.
%mrci
# -----------------------------------------------------------
# Orbital selection
# NOTE: The orbitals are used as supplied. Thus, the ORDER of
# orbitals is critical. Say you have
# nact electrons in the active space
# nint electrons in the internal space
# nfrozen electrons
# * The first nfrozen/2 orbitals will not be included in the CI
# * The next nint/2 orbitals will be doubly occupied in all
# references
# * the nact electrons are distributed over the,say, mact
# orbitals according to the active space definitions.
# The remaining orbitals are external.
# IT IS YOUR RESPONSIBILITY THAT THE ORBITAL ORDERING MAKES
# SENSE!
# A sensible two-step procedure is:
# * generate some orbitals and LOOK AT THEM. Decide which ones
# to include in the CI.
# * re-read these orbitals with ! MORead NoIter. Perhaps use
# the "rotate" feature to reorder the MOs
# Then jump right into the CI which is defined in this se-
# cond job
#
# NOTE: the MRCI module respects the %method FrozenCore settings
# -----------------------------------------------------------
Loc 0,0,0
# Localize orbitals in the internal (first flag), active
# (second flag) and external space (third flag).
UseIVOs false
# Use improved virtual orbitals in the CI
6.17 The Multireference Correlation Module 427
# ---------------------------------
# Method selection
# ---------------------------------
CIType MRCI # Multireference CI (default)
MRDDCI1 # Difference dedicated CI 1-degree of freedom
MRDDCI2 # Difference dedicated CI 2-degrees of freedom
MRDDCI3 # Difference dedicated CI 3-degrees of freedom
MRACPF # Average coupled pair functional
MRACPF2 # Modified version of ACPF
MRACPF2a # A slightly modified version of ACPF-2a
MRAQCC # Average quadratic coupled cluster
MRCEPA_R # Multireference CEPA due to Ruttink
MRCEPA_0 # CEPA-0 approximation
SORCI # Spectroscopy oriented CI
SORCP # Spectroscopy oriented couplet pair approx.
MRMP2 # Multireference Moeller-Plesset at second order
MRMP3 # Multireference Moeller-Plesset at third order
MRMP4 # Multireference Moeller-Plesset at fourth order
# but keeping only singles and doubles relative to
# the reference configurations.
# ---------------------------------
# Selection thresholds
# ---------------------------------
Tsel 1e-6 # Selection threshold for inclusion in the CI based
# 2nd order MP perturbation theory <0|H|I>/DE(MP)
Tpre 1e-4 # Selection of configurations in the reference space
# after the initial diagonalization of the reference
# space only configurations with a weight large>Tpre
# to any root are included
AllSingles false
# include ALL SINGLES in the CI. Default is now TRUE!!!
LinearResponse false
# Use ground state correlation energy to compute the shift for
# higher roots (not recommended)
# ---------------------------------
# Natural Orbital Iterations
# ---------------------------------
NatOrbIters 0 # default
# number of average natural orbital iterations
Tnat 1e-4
# cutoff of natural orbitals. NOs with an occupation number less
# then Tnat will not be included in the next iteration
# Also, orbitals with occupation number closer than Tnat to 2.0
# will be frozen in the next iteration
Tnat2 -1
# if chosen >0 then Tnat2 is the threshold for freezing the
# almost doubly occupied orbitals. Otherwise it is set equal
# to Tnat
# ----------------------------------
# Additional flags and algorithmic
# details
# ----------------------------------
PrintLevel 2 # default. Values between 1 and 4 are possible
DoDDCIMP2 false
# for DDCI calculations: if set to true the program computes
# a MP2 like correction for the effect of inactive double
# excitations which are not explicitly included in the CI. This
# is necessary if you compare molecules at different geometries
# or compute potential energy surfaces.
# ----------------------------------
# The SORCP model
# ----------------------------------
CIType_in # First step CIType
CIType_fi # Second step CIType
Exc_in # First step excitation scheme
Exc_fi # Second step excitation scheme
Tsel_in # First step Tsel
Tsel_fi # Second step Tsel
Tpre_in # First step Tsel
Tpre_fi # Second step Tpre
# ----------------------------------
# Multirerence perturbation theory
# ----------------------------------
MRPT_b 0.02 # Intruder state avoidance PT after Hirao (default 0.0)
# with this flag individual intruders are shifted away to
# to some extent from the reference space
MRPT_shift 0.3 # Level shift introduced by Roos which shifts the entire
6.17 The Multireference Correlation Module 429
# ======================================
# Definitions of blocks of the CI Matrix
# ======================================
NewBlock 2 * # generate a Block with doublet(=2) multiplicity
Nroots 1 # number of roots to be generated
Excitations cis # CI with single excitations
cid # CI with double excitations
cisd # CI with single and double excitations
ddci1 # DDCI list with one degree of freedom
ddci2 # DDCI list with two degrees of freedom
ddci3 # DDCI list with three degrees of freedom
Flags[_class_] 0 or 1
# Turn excitation classes on or off individually
# ’s’ stands for any SOMO, ’i’,’j’ for internal orbitals and
# ’a’,’b’ for external orbitals
# Singles _class_ = ss, sa, is, ia
# Doubles _class_ = ijss, ijsa, ijab,
# isss, issa, isab,
# ssss, sssa, ssab
# ’Flags’ takes priority over ’Excitations’. In fact ’Excitations’
# does nothing but to set ’Flags’. So, you can use ’Excitations’
# to provide initial values for ’Flags’ and then modify them
# with subsequent ’Flags’ assignments
refs
#
# First choice - complete active space
#
CAS(nel,norb) # CAS-CI reference with nel electrons in
# Norb orbitals
#
# Second choice - restricted active space
#
RAS(nel: m1 h/ m2 / m3 p)
# RAS-reference with nel electrons
# m1= number orbitals in RAS-1
# h = max. number of holes in RAS-1
# m2= number of orbitals in RAS-2 (any number of
# electrons or holes)
# m3= number of orbitals in RAS-3
# p = max. number of particles in RAS-3
#
# Third choice - individually defined configurations
#
{ 2 0 1 0}
{ 1 1 1 0}
430 6 Detailed Documentation
etc.
# define as many configurations as you want. Doubly occupied MOs
# singly occupied MOs and empty MOs. Important notes:
# a) the number of electrons must be the same in all references
# b) the number of orbitals is determined from the number of
# definitions. Thus, in the example above we have three active
# electrons and four active orbitals despite the fact that the
# highest orbital is not occupied in any reference.
# The program determines the internal, active and external spaces
# automatically from the number of active electrons and orbitals
end
end
# there can be as many blocks as you want!!!
# ----------------------------------
# Density matrix generation flags
# First Key= State densities <I|D|I>
# =0: none
# =1: Ground state only (lowest root of all blocks; Electron only)
# =2: Ground state only (Electron and spin density)
# =3: Lowest root from each block (Electron density)
# =4: Lowest root from each block (Electron and spin density)
# =5: All states (Electron density)
# =6: All states (Electron and spin density)
# Second Key= Transition densities <I|D|J>
# needed for all transition intensities, g-tensor etc
# =0: none
# =1: from the ground state into all excited states (el)
# =2: from the ground state into all excited states (el+spin)
# =3: from all lowest states into all excited states (el)
# =4: from all lowest states into all excited states (el+spin)
# =5: all state pairs (el)
# =6: all state pairs (el+spin)
# Note that for perturbation theory the density is computed as
# an expectation value over the first (second) order wavefunction.
# which is renormalized for this purpose
# ----------------------------------
Densities 1,1
# ----------------------------------
# Algorithm for the solver
# ----------------------------------
Solver Diag # Davidson like solver
DIIS # DIIS like solver
# both solvers have their pros and cons. The DIIS may converge
# better or use less time since it only recomputes the vectors that
# have not yet converged; The DIIS may be less sensitive to root flipping
# effects but occasionally it converges poorly and states of the same
# symmetry are occasionally a little problematic
# For perturbation theory DIIS is always used.
# For both solvers
MaxIter 100 # the maximum number of iterations
Etol 1e-6 # convergence tolerance for energies in Hartree
Rtol 1e-6 # convergence tolerance for residual
# ----------------------------------
# Integral storage, memory and files
# ----------------------------------
IntStorage FloatVals
DoubleVals (default)
# store integrals with float (4 byte) or double (8 byte)
# accuracy in main memory
FourIndexInts false (default)
True
# Store ALL four index integrals over Mos in main memory
# only possible for relatively small systems, perhaps up
# to 150-200 MOs included in the CI
MaxMemInt 256
# Maximum amount of core memory devoted to the storage of
# integrals. If NOT all three index integrals fit into main
# memory the program fails
MaxMemVec 16
# Maximum amount of memory used for section of the trial and
# sigma vectors. This is not a particularly critical variable
KeepFiles false
# Keep integrals and CI program input file (.mrciinp). Then
# you can manually edit the .mrciinp file which is a standard
# ASCII file and run the MRCI program directly. The only thing
# you cannot change is the orbital window.
end
The spin-orbit coupling (SOC) and spin-spin coupling (SSC) effects can be calculated very accurately using a
wavefunction obtained from a multiconfigurational calculation of a multi-reference type such as CASSCF, MRCI, or
MRPT in the form of:
E X E
SS
= Cµl ΦSS (6.230)
ΨI µ
µ
Here the upper indices SS stands for a wave function of the spin quantum number S and spin projection MS = S.
Since the BO Hamiltonian does not contain any complex-valued operator, the solutions ΨSS
I may be chosen to be
real-valued.
432 6 Detailed Documentation
The SOC and SSC effects along with the Zeeman interaction can be included by means of the quasi-degenerate
perturbation theory (QDPT). In this approach the SOC, the SSC, and the Zeeman operators are calculated in the
basis of pre-selected solutions of the BO Hamiltonian ΨSM
I .
S0 M 0 S0 M 0
D E D E
(S)
ΨSM ĤBO + ĤSOC + ĤSSC + ĤZ ΨJ = δIJ δSS 0 δM M 0 EI + ΨSM ĤSOC + ĤSSC + ĤZ ΨJ (6.231)
I I
Diagonalization of this matrix yields the energy levels and eigenvectors of the coupled states. These eigenvectors in
fact represent linear combinations of the solutions of ĤBO with complex coefficients.
The effective one-electron SOC operator in second quantized form can be written as:
1X − ↑ + ↑
h i
ĤSOM F = zpq âp b̂q + zpq 0
b̂p âq + zpq â↑p âq − b̂↑p b̂q (6.232)
2 pq
Here â↑p and b̂↑p stand for creation of α and β electrons respectively; âp and b̂p represent the corresponding annihilation
− x y + x y 0 z
operators. The matrix elements zpq = zpq − izpq , zpq = zpq + izpq , and zpq = zpq (upper x, y, z indices denote the
Cartesian components) are constructed from the matrix elements described in section 6.21.3.3.
(2)
3ge2 α2 X X (−1)m
ĤSS = − 5
[rij × rij ](2)
−m [S (i) × S (j)] (6.233)
8 m=0,±1,±2
rij
i6=j m
For matrix elements between states of the same multiplicity it can be simplified to
D E √
(S+1)(2S+3)
aSM ĤSSC a0 SM 0 = √
S(2S−1)
(6.234)
!
m S0 2 S P (−m)
aSS Q0pqrs a0 SS
P
× (−1) 0 pqrs Dpqrs
m M m M
Here
1 1 z z
Q(0) z z
pqrs = √ Epq δsr − Sps Srq + Spq Srs − Epq Ers (6.235)
4 6 2
represents the two-electron quintet density. The operators Epq = â↑p âq + b̂↑p b̂q and Spq
z
= â↑p âq − b̂↑p b̂q symbolize here
the one-electron density operator and the spin density operator accordingly. The spatial part
ZZ
(0) 1 3r1z r2z − r1 r2
Dpqrs = √ ϕp (r1 ) ϕr (r2 ) 5
ϕq (r1 ) ϕs (r2 ) dr1 dr2 (6.236)
6 r12
denotes the two-electron field gradient integrals. These two-electron integrals can be evaluated using the RI approxi-
mation.
ĤZeeman = µB L̂ + ge Ŝ B (6.237)
6.17 The Multireference Correlation Module 433
with L̂ representing the total orbital momentum operator, and Ŝ being the total spin operator.
Since the both the energies and the wavefunction of the low-lying spin-orbit states are available, the effective
Hamiltonian theory can be used to extract the full ZFS tensor. In this approach one starts by constructing a model
Hamiltonian, which for the mononuclear complexes is:
provided that the ground state is non-degenerate. By applying this Hamiltonian on the basis of the model space, all
the |S, MS i components of the ground state, the interaction matrix is constructed.
The construction of effective Hamiltonian relies on the information contained in both the energies and the wavefunctions
of the low-lying spin-orbit states. Following des Cloizeaux formalism, the effective Hamiltonian reproduces the energy
levels of the “exact” Hamiltonian Ek and the wavefunctions of the low-lying states projected onto the model space
Ψ̃:
These projected vectors are then symmetrically orthonormalized resulting in an Hermitian effective Hamiltonian,
which can be written as:
X 1 1
Ĥef f |Ψ̃i = |S − 2 Ψ̃k iEk hS − 2 Ψ̃k | (6.240)
k
The effective interaction matrix obtained by expanding this Hamiltonian into the basis of determinants belonging to
the model space, is the compared to the matrix resulted from expanding the model Hamiltonian. Based on a singular
value decomposition procedure, all 9 elements of the ZFS tensor are extracted.
In the input file the relevant keys are located in the soc sub-block:
%mrci
soc
DoSOC true # include the SOC contribution
DoSSC true # include the SSC contribution
PrintLevel 2 # printing level
TPrint 0.01 # threshold for printing eigenvalue contributions
end
end
Firstly, the SSC contribution to ZFS is calculated. The output file for a CASCI calculation on top of a CASSCF(8,6)
reference of an oxygen molecule with def2-SVP basis set and four singlets and four triplet states included into the
QDPT treatment is presented as follows:
434 6 Detailed Documentation
---------------------
SSC MATRIX GENERATION
---------------------
Blocks order: 1 0
BLOCKI(Mult) BLOCKJ(Mult) Root I Root J dxx dyy dzz dxy dxz dyz
1/cm 1/cm 1/cm 1/cm 1/cm 1/cm
1( 3) 1( 3) 0 0 -0.316899 -0.316899 0.633797 -0.000000 -0.000000 -0.000000
1( 3) 1( 3) 1 0 0.000000 0.000000 -0.000000 -0.000000 -0.000000 -0.000000
1( 3) 1( 3) 1 1 0.251010 0.251010 -0.502020 0.000000 -0.000000 -0.000000
1( 3) 1( 3) 2 0 -0.000000 -0.000000 0.000000 0.000000 -0.000000 -0.000000
1( 3) 1( 3) 2 1 -0.000000 0.000000 0.000000 0.000000 -0.000000 -0.000000
1( 3) 1( 3) 2 2 0.251010 0.251010 -0.502020 0.000000 -0.000000 -0.000000
1( 3) 1( 3) 3 0 -0.000000 0.000000 -0.000000 0.000000 -0.000000 -0.000000
1( 3) 1( 3) 3 1 -0.095105 0.095105 -0.000000 -0.010169 -0.000000 -0.000000
1( 3) 1( 3) 3 2 -0.010169 0.010169 -0.000000 0.095105 -0.000000 -0.000000
1( 3) 1( 3) 3 3 0.307060 0.307060 -0.614121 -0.000000 -0.000000 -0.000000
Next, the SSC matrix is constructed form the precalculated matrix elements and subjected to diagonalization. The
full SSC matrix is available with the PrintLevel key set to 3. Then, the SSC energy levels are printed in cm−1 and
eV along with the Boltzmann level populations.
Additionally, the eigenvectors of the SSC matrix are printed if the PrintLevel key is set to 2:
Eigenvectors :
STATE 0 : 0.00
STATE 1 : 0.95
STATE 2 : 0.95
STATE 3 : 7130.24
STATE 4 : 7130.77
The SSC coupled states are counted here from the lowest one, and the energy of a state is printed in cm−1 . The ‘Weight’
column represents here squared absolute values of the complex contribution coefficients of the BO Hamiltonian states
to the SSC coupled states. ‘Real’ and ‘Image’ are real and imaginary parts of complex coefficients. Accordingly, ‘Root’,
‘Spin’, and ‘Ms’ denote here the spin quantum number and the spin projection number of a particular contribution.
The column ‘Block’ represent the symmetry block number. Note that the program re-aranges blocks from the oder
given in the input file.
Next, the SSC contribution to the ZFS obtained with first-order perturbation theory is printed along with the D
values and the E/D ratio.
---------------------------------
ZERO-FIELD SPLITTING
(SPIN-SPIN COUPLING CONTRIBUTION)
---------------------------------
raw-matrix (cm**-1):
-0.316896 -0.000000 -0.000000
-0.000000 -0.316896 -0.000000
-0.000000 -0.000000 0.633791
diagonalized D-tensor (cm**-1):
-0.316896 -0.316896 0.633791
Here the eigenvalues are printed in the increasing order, and the column under the eigenvalue represents the eigenvector
belonging to this eigenvalue. The axes for the coordinate system that diagonalizes the D tensor are chosen to fulfill
the condition
1
0 6 E /D 6 (6.241)
3
Next, the SOC part to the splitting is calculated. Firstly, the diagonal (with respect to the spin) matrix element type
of hΨI | zxpq Spq
z
|ΨJ i, hΨI | zypq Spq
z
|ΨJ i, hΨI | zzpq Spq
z
P P P
|ΨJ i are evaluated between states of the same multiplicity
pq pq pq
P x + P y + P z +
and hΨI | zpq Spq |ΨJ i, hΨI | zpq Spq |ΨJ i, hΨI | zpq Spq |ΨJ i between states of different multiplicities.
pq pq pq
BLOCKI(Mult) BLOCKJ(Mult) Root I Root J <I|Lx S |J> <I|Ly S |J> <I|Lz S |J>
1/cm 1/cm 1/cm
The full SOC matrix elements can be printed if the PrintLevel key is set to 3. Similar to the SSC contribution, the
SOC energies are printed next.
The eigenvectors of the SOC matrix are provided along with contributions from roots S, and Ms .
Eigenvectors :
STATE 0 : 0.00
STATE 1 : 1.90
STATE 2 : 1.90
STATE 3 : 7130.93
STATE 4 : 7131.46
Next, the SOC contribution to the ZFS obtained with second-order perturbation theory is printed along with the D
values and the E/D ratio.
----------------------------------
ZERO-FIELD SPLITTING
(SPIN-ORBIT COUPLING CONTRIBUTION)
----------------------------------
raw-matrix (cm**-1):
0.000000 -0.000000 -0.000000
-0.000000 0.000000 0.000000
-0.000000 0.000000 1.905043
438 6 Detailed Documentation
0 3 0 0.000 0.000
0 3 1 -0.000 0.000
0 3 2 -0.000 -0.000
0 3 3 -0.000 -0.000
1 1 0 0.000 0.000
1 1 1 0.000 -0.000
1 1 2 1.905 0.000
1 1 3 0.000 0.000
From this example is readily seen that the whole contribution to the SOC part of D-value comes from the interaction
between the ground state and the singlet third root.
The ZFS tensor based on the effective Hamiltonian theory is printed next.
--------------------------------------------------------
ZERO-FIELD SPLITTING
(EFFECTIVE HAMILTONIAN SPIN-ORBIT COUPLING CONTRIBUTION)
--------------------------------------------------------
raw-matrix (cm**-1):
-0.000000 0.000000 -0.000000
0.000000 0.000000 -0.000000
-0.000000 -0.000000 1.904771
diagonalized D-tensor (cm**-1):
-0.000000 0.000000 1.904771
Finally, all these steps described above are repeated for the combined SOC and SSC matrix.
6.17 The Multireference Correlation Module 439
The diagonal matrix elements of the SOC and SSC matrix which correspond to non-relativistic energies can be
replaced by more accurate values. In the output of the program the corresponding transition energies printed in
cm−1 .
Those transition energies can be substituted by a more accurate energies provided in the input file as follows:
%soc
dosoc true
dossc true
EDiag[ 0] 0.00 # root 0 of block 0
EDiag[ 1] 48328.40 # root 1 of block 0
EDiag[ 2] 48328.40 # root 2 of block 0
EDiag[ 3] 49334.96 # root 3 of block 0
EDiag[ 4] 7763.59 # root 0 of block 1
EDiag[ 5] 7763.59 # root 1 of block 1
EDiag[ 6] 11898.46 # root 2 of block 1
EDiag[ 7] 46754.23 # root 3 of block 1
end
Accurate diagonal energies generally improve the accuracy of the SOC and SSC splittings.
The inclusion of the Zeeman contribution into the QDPT procedure allows to obtain the splittings of the magnetic
levels in an external magnetic field. The switch for this calculation and the magnetic field strength are defined in the
soc subblock of the mrci block:
440 6 Detailed Documentation
%mrci
soc
DoSOC true #
DoSSC true #
MagneticField true # default false
B 1,10,100,1000 # Strengh of the magnetic field in Gauss.
# 4000 is the default value
end
end
Then, the output contains three sets of data of splittings of the magnetic levels with the magnetic field applied parallel
to x, y, and z directions:
Here the number in a row represents the strength of the magnetic field (in Gauss), and the following pairs of numbers
denote the energy of the magnetic level (in cm−1 ) with its occupation number. This table can be readily plotted with
any suitable graphical program.
The orca mrci program contains an option to calculate g-tensors using MRCI wavefunctions. For a system with an odd
number of electrons, the doubly degenerate eigenvalues obtained from the QDPT procedure represent Kramers pairs
and used to build the matrix elements of the total spin operator and the total angular momentum operator from the
Zeeman Hamiltonian. Denoting Ψ as a solution and Ψ̄ as its Kramers partner and using matrix element notations
Φk11 = hΨ| L̂k + ge Ŝk |Ψi , Φk12 = hΨ| L̂k + ge Ŝk |Ψi , k = x, y, z (6.242)
gkz = 2cΦk11 , gky = −2cIm Φk12 , gkx = 2cRe Φk12 (6.243)
G = gg T (6.244)
G is subjected further to diagonalization yielding positive eigenvalues, the square roots of which give the principal
values of g-matrix.
√ p √
gxx = Gxx , gyy = Gyy , gzz = Gzz (6.245)
A typical mrci block of the input file for a g-tensor calculation should look as the following:
-------------------
KRAMERS PAIR 1 :
-------------------
Matrix elements Re<1|S|1> 0.063898 -0.233970 0.970139
Matrix elements Re<1|S|2> -0.255627 0.935856 0.242538
Matrix elements Im<1|S|2> 0.964660 0.263492 0.000010
Matrix elements Re<1|L|1> -0.000083 0.000305 0.000001
442 6 Detailed Documentation
-------------------
ELECTRONIC G-MATRIX
-------------------
raw-matrix g-matrix:
-0.511181 1.871439 0.485640
-1.929040 -0.526908 -0.000020
0.127777 -0.467873 1.942530
diagonalized g**2 matrix (sqrt of eigenvalues taken):
1.999705 1.999707 2.002316
Here for the L and S matrix elements indexes 1 and 2 are assumed to denote Kramers partners, and three numbers in
the first row stand for x, y, and z contributions.
6.17.2.4 Relativistic Picture Change in Douglas Kroll SOC and Zeeman Operators
The DKH correction to the SOC operator is implemented in ORCA as a correction to the one-electron part of the
SOMF operator. The DKH transformation is performed up to the second order, and the two-electron part in our
implementation is left untransformed. However, the electronic density employed for evaluating the SOMF matrix
elements is obtained from a scalar relativistic calculation. The inclusion of the DKH correction is controlled by the
picturechange key in the rel block:
The ‘picturechange’ key can be set to 0, 1, and 2 for no picture change, the first order, and the second order DKH
transformations of the SOC operator.
With ‘picturechange’ set to 1 or 2 the DKH correction are applied in the first order to the Zeeman operator. This
correction has a visible effect on calculated g-tensors for molecules containing third-row and heavier atoms.
6.17 The Multireference Correlation Module 443
The MRCI module of the ORCA program allows calculating MCD spectra and the SOC effects on absorption spectra.
The formalism is described in detail by Ganyushin and Neese [317]. The approach is based on the direct calculation of
the transition energies and transition probabilities between the magnetic levels. Namely, the differential absorption of
lcp- and rcp photons for transitions from a manifold of initial states A to a manifold of final states J. Using Fermi’s
golden rule, the Franck-Condon approximation, assuming a pure electronic dipole mechanism and accounting for the
Boltzmann populations of the energy levels, the basic equation of MCD spectroscopy may be written as (atomic units
are used throughout):
∆ε X
(Na − Nj ) |hΨa |mLCP | Ψj i|2 − |hΨa |mRCP | Ψj i|2 f (E)
=γ (6.246)
E a,j
Here a and j label members of the initial and state manifold probed in the experiments.
denotes the Boltzmann population and if the a-th ground state sublevel at energy Ea , f (E) stands for a line shape
function, and γdenotes a collection of constants. The electric dipole operators are given by:
X X
m
~ = ~N −
ZN R ~ri (6.250)
N i
where N and i denotes summations of nuclei (at positions R ~ N with charges ZN ) and electrons (at positions ~ri )
respectively. The calculated transition dipole moment are subjected to the space averaging over the Euler angles
which is performed by a simple summation over three angular grids.
Z2π Z2π Zπ X ∆ε
∆ε 1 ∆ε
= sin θdθdφdψ ≈ sin θτ (6.251)
E ev 8π 2 E µητ
E µητ
ψ=0 φ=0 θ=0
Finally, every transition is approximated by a Gaussian curve with a definite Gaussian shape width parameter. Hence,
the final calculated MCD spectrum arises from the superposition of these curves.
As an illustration, consider calculation of a classical example of MCD spectrum of [Fe(CN)6 ]3− . The mrci block of the
input file is presented below.
444 6 Detailed Documentation
The parameters B and Temperature can be assigned in pairs, i.e. B = 1000, 2000, 3000. . . , Temperature = 4, 10,
300. . . . The program calculates the MCD and absorption spectra for every pair. Now for every point of the integration
grid the program prints out the Euler angles, the orientation of the magnetic field in the coordinate system of a
molecule, and the energy levels.
In the next lines, ORCA calculates the strength of lcp and rcp transitions and prints the transition energies, the
difference between lcp and rcp transitions (denoted as C), and sum of lcp and rcp transitions (denoted as D), and C
by D ratio.
dE Na C D C/D
All C and D values are copied additionally into the text files input.1.mcd, input.2.mcd. . . , for every pair of Temperature
and B parameters. These files contain the energies and C and D values for every calculated transition. These files are
used by the program orca mapspc to calculate the spectra lines. The orca mapspc program generates from the raw
transitions data into spectra lines. The main parameters of the orca mapspc program are described in section 7.18.1.
A typical usage of the orca mapspc program for MCD spectra calculation for the current example may look as the
following:
Here the interval for the spectra generation is set from 20000 cm−1 to 50000 cm−1 , and the line shape parameter is
set to 2000 cm−1 .
Very often, it is desirable to assign different line width parameters to different peaks of the spectra to obtain a
better fitting to experiment. orca mapspc can read the line shape parameters from a simple text file named as
input.1.mcd.inp. This file should contain the energy intervals (in cm−1 ) and the line shape parameters for this energy
interval in the form of:
This file should not be specified in the executing command; orca mapspc checks for its presence automatically:
Finally, the orca mapspc program generates the output text file input.1.mcd.dat which contains seven columns of
numbers: transition energies, intensities of MCD transitions (the MCD spectrum), intensities of absorption transitions
(the absorption spectrum), the ratio between the MCD and absorption intensities, and the last three columns represent
the ‘sticks’ of the corresponding transitions.
Now the MCD and the absorption spectra can be plotted with a suitable graphical program, for instance with the
Origin program.
Figure 6.11: Calculated MCD and absorption spectra of [Fe(CN)6 ]3− (dash lines) compared to
experimental spectra (solid lines).
In this section various aspects of the simulation and fit of optical spectra, including absorption, fluorescence, and
resonance Raman are considered. This part of the ORCA is fairly autonomous and can also be used in a data analysis
448 6 Detailed Documentation
context, not only in a “quantum chemistry” mode. The program is called orca asa, where ASA stands for “Advanced
Spectral Analysis”. The program was entirely designed by Dr. Taras Petrenko.
The general philosophy is as follows: An ORCA run produces the necessary data to be fed into the orca asa program
and writes an initial input file. This input file may be used to directly run orca asa in order to predict an absorption,
fluorescence or resonance Raman spectrum. Alternatively, the input file may be edited to change the parameters used
in the simulations. Last – but certainly not least – the orca asa program can be used to perform a fit of the model
parameters relative to experimental data.
Petrenko, T.; Neese, F. (2007) Analysis and Prediction of Absorption Bandshapes, Fluorescence
Bandshapes, Resonance Raman Intensities and Excitation Profiles using the Time Dependent
Theory of Electronic Spectroscopy. J. Chem. Phys., 127, 164319
Which must be cited if you perform any work with the orca asa program!
The program input comprises the following information: (1) model and specification of the model parameters
characterizing the electronic structure of a molecule, as well as lineshape factors; (2) spectral ranges and resolution for
simulations; (3) specification of vibrational transitions for rR excitation profile and spectra generation; (4) certain
algorithm-selecting options depending on the model; (5) fitting options.
All optional parameters (1)-(3) are given in the %sim block, and fitting options are in the %fit block. The model
parameters are specified within various blocks that will be described below. The program orca asa is interfaced to
ORCA and inherits its input style. The input for orca asa run can be also generated upon ORCA run.
The current implementation features so called “simple”, “independent mode, displaced harmonic oscillator” (IMDHO),
and “independent mode, displaced harmonic oscillator with frequency alteration” (IMDHOFA) models.
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
449
Profiles and Spectra with the orca asa Program
This model represents the simplest approach which is conventionally used in analysis of absorption spectra. It neglects
vibrational structure of electronic transitions and approximates each individual electronic band by a standard lineshape,
typically a Gaussian, Lorentzian or mixed (Voigt) function. This model can only make sense if vibrational progressions
are not resolved in electronic spectra. Upon this approximation the intensity of absorption spectrum depends on the
energy of the incident photon (EL ), the electronic transition energy (ET ), the e transition electric dipole moment
(M,evaluated at the ground-state equilibrium geometry). Lineshape factors are specified by homogeneous linewidth Γ
and standard deviation parameter Θ corresponding to Gaussian distribution of transition energies. The following
example illustrates a simple input for simulation of absorption bandshapes using various intensity and lineshape
parameters.
# example001.inp
#
# Input file to generate absorption spectrum consisting
# of 3 bands with different lineshape factors:
#
# 1. Lorentzian centered at 18000cm**-1 (damping factor Gamma= 100 cm**-1)
# 2. Gaussian centered at 20000cm**-1
# (standard deviation Sigma= 100 cm**-1)
# 3. Mixed Gaussian-Lorentzian band representing Voight profile
# centered at 21000 cm**-1
%sim
Model Simple
end
#---------------------------------------------------------------------------
# Transition Gamma Sigma Transition Dipole Moment (atomic unit)
# Energy (cm**-1) (cm**-1) (cm**-1) Mx My Mz
#---------------------------------------------------------------------------
$el_states
3 # number of electronic states
1 18000.0 100.00 0.0 1.0 0.0 0.0
2 20000.0 0.00 100.0 1.0 0.0 0.0
3 22000.0 50.00 50.0 1.0 0.0 0.0
The parameters of of the final electronic states reached by the respective transitions are specified in the $el states
block. The spectral range and resolution used in the calculation are defined by the AbsRange and NAbsPoints
keywords in %sim block. The calculation of the absorption spectrum is automatically invoked if NAbsPoints>1. After
the orca asa run you will find in your directory file example001.abs.dat containing absorption spectrum in simple
450 6 Detailed Documentation
Figure 6.12: Absorption spectrum generated after orca asa run on file example001.inp. Three
bands have different lineshape pararameters. Note that although all transitions are
characterized by the same transition electric dipole moment their intensities are scaled
proportionally to the transition energies.
two-column ASCII format suitable to be plotted with any spreadsheet program. Absorption spectra corresponding to
individual electronic transitions are stored in file example001.abs.as.dat ( the suffix “as” stands for “All States”).
The output of the program run also contains information about oscillator strengths and full-width-half-maximum
(FWHM) parameters corresponding to each electronic band:
----------------------------------------------
State EV fosc Stokes shift
(cm**-1) (cm**-1)
----------------------------------------------
1: 18000.00 0.054676 0.00
2: 20000.00 0.060751 0.00
3: 22000.00 0.066826 0.00
----------------------------------------
BROADENING PARAMETETRS (cm**-1)
----------------------------------------
State Gamma Sigma FWHM
----------------------------------------
1: 100.00 0.00 200.00
2: 0.00 100.00 235.48
3: 50.00 50.00 180.07
Note that although all three types of lineshape functions are symmetric this is not true for the overall shapes of
individual absorption bands since the extinction coefficient (absorption cross-section) is also proportional to the
incident photon energy. Therefore, if the linewidth is larger than 10% of the peak energy the asymmetry of the
electronic band can be quite noticeable.
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
451
Profiles and Spectra with the orca asa Program
6.18.2.2 Example: Modelling of Absorption and Fluorescence Spectra within the IMDHO
Model
The IMDHO model is the simplest approach that successfully allows for the prediction of vibrational structure in
electronic spectra as well as rR intensities for a large variety of real systems. This model assumes:
2. origin shift of the excited-state potential energy surface relative to the ground-state one;
3. no vibrational frequency alteration or normal mode rotation occurs in the excited state;
In addition to the parameters that enter the “Simple model” defined above it requires some information about the
vibrational degrees of freedom. The required information consists of the ground-state vibrational frequencies {ωgm }
and (dimensionless) origin shifts {∆mi }, where i and m refer to electronic states and normal modes respectively. ∆ is
expressed in terms of dimensionless normal coordinates. Accordingly, for the IMDHO model one has to specify the
following blocks
• The $el states block contains the parameters ET , Γ,Θ, M for each electronic state. By default ET is assumed
to be adiabatic minima separation energy. Alternatively, it can be redefined to denote for the vertical transition
energy.This is achieved by specifiying the keyword EnInput=EV in the %sim block.
• A $sdnc block contains parameters {∆mi } in matrix form such that the i-th column represents the dimensionless
displacements along all normal modes for the i-th excited-state PES.
The file example002.inp provides the input for simulation of absorption and fluorescence spectra of a system
characterized by significant displacements of the excited-state origin along 5 normal coordinates.
# example002.inp
#
# Input file for simulation of vibrational structure
# in absorption and fluorescence spectra assuming
# origin shift of excited PES along 5 normal coordinates.
# The simulated spectra closely reproduce the experimental
# optical bandshapes for the tetracene molecule.
#
%sim
Model IMDHO
end
#---------------------------------------------------------------------------
# Transition Gamma Sigma Transition Dipole Moment (atomic unit)
# Energy (cm**-1) (cm**-1) (cm**-1) Mx My Mz
#---------------------------------------------------------------------------
$el_states
1
1 21140.0 50.00 100.0 1.0 0.0 0.0
The calculation of absorption and fluorescence spectra is automatically invoked if the parameters NAbsPoints>1 and
NFlPoints>1. The input file also contains the optional block $ss which specifies the Stokes shift λ for each electronic
transition. This parameter is equal to the energy separation between the 0-0 vibrational peaks in the absorption and
fluorescence spectra as shown in Figure 6.13 . In general λ accounts for solvent induced effects as well as unresolved
vibrational structure corresponding to low-frequency modes that are not specified in the input. Note that we have
specified parameters AbsScaleMode=Rel and FlScaleMode=Rel in %sim block in order to ensure that the simulated
spectra are normalized to unity. The calculated absorption and fluorescence spectra are stored in example002.abs.dat
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
453
Profiles and Spectra with the orca asa Program
Figure 6.13: Absorption and fluorescence spectra generated after orca asa run on the file
example002.inp. If the homogeneous broadening is set to be Γ = 10cm−1 one can
resolve underlying vibrational structure and identify various fundamental and combi-
nation transitions.
6.18.2.3 Example: Modelling of Absorption and Fluorescence Spectra within the IMDHOFA
Model
IMDHOFA (Independent Mode Displaced Harmonic Oscillators with Frequency Alteration) is based on the same
assumptions as the IMDHO model except for vibrational frequency alteration in excited state can take place. The file
example003.inp features almost the same input parameters as example002.inp. The IMDHOFA model is invoked by
the keyword Model=IMDHOFA in the %sim block. Additionally, one has to provide the obligatory block $vib freq es.
It contains the excited-state vibrational frequencies {ωemi } in matrix form such that the i-th column represents the
vibrational frequencies of all normal modes for the i-th excited-state PES.
$vib_freq_es
5 1 # number of modes and number of excited states
1
1 410.0
2 1293.0
3 1400.0
4 1600.0
5 1730.0
454 6 Detailed Documentation
Figure 6.14: Absorption and fluorescence spectra generated after orca asa run on the file
example003.inp. Also, the high-resolution spectra corresponding to homogeneous
broadening Γ = 10cm−1 are shown.
For the IMDHO model the orca asa is capable to model absorption and emission spectra in the finite-temperature
approximation. While the keyword Model=IMDHO assumes the zero-temperature approximation, the value of
Model=IMDHOT invokes the calculation of the spectra for the finite temperature which is specified by the paramter TK
in the block %sim:
# example004.inp
#
#
%sim
Model IMDHOT
TK 300 # temperature (in Kelvin)
#---------------------------------------------------------------------------
# Transition Gamma Sigma Transition Dipole Moment (atomic unit)
# Energy (cm**-1) (cm**-1) (cm**-1) Mx My Mz
#---------------------------------------------------------------------------
$el_states
1
1 21140.0 50.00 100.0 1.0 0.0 0.0
This example illustrates a typical situation in large molecules which feature a number of low frequency modes with
significant values of dimensionless displacements for a given excited-state PES. In the case of high density of vibrational
states with frequencies below or comparable to the intrincic value of FWHM (determined by Γand Θ) the vibrational
progression is unresolved, whereby the spectra become very diffuse and show large separation between the maxima of
absorption and emission spectra (Figure 6.14). Besides , upon the condition hνi 6 kT the effective bandwidths and
positions of maxima in the spectra can be strongly subject to temperature effects.
The effective Stokes shift and linewidth parameters which are evaluated in the simple self-consistent procedure are
given in the output of the orca asa run:
456 6 Detailed Documentation
Figure 6.15: Absorption and fluorescence spectra for T=0 K (blue) and T=300 K (red) generated
after orca asa run on the file example004.inp. Black lines show spectra corresponding
to the case where all low-frequency modes were excluded from the calculation.
------------------------------------------------------------------------------
State E0 EV fosc Stokes shift Effective Stokes shift
(cm**-1) (cm**-1) (cm**-1) (cm**-1)
------------------------------------------------------------------------------
1: 21140.00 24535.85 0.074529 300.00 7091.70
-----------------------------------------------------------------------------------------------
BROADENING PARAMETETRS (cm**-1)
-----------------------------------------------------------------------------------------------
Intrinsic Effective
State -------------------------- --------------------------------------------------------
Sigma FWHM
Gamma Sigma FWHM --------------------------- ---------------------------
0K 298.15K 300.00K 0K 298.15K 300.00K
-----------------------------------------------------------------------------------------------
1: 50.00 100.00 293.50 1125.34 1411.13 1413.57 2703.84 3376.75 3382.48
Note that the evaluation of the effective parameters is rather approximate and these values can noticeable deviate
from those which can be directly deduced from the calculated spectra. However, such an information usually provides
the proper order of magnitude of the effective vibronic broadening and Stokes shift. As indicated in the program
output above, the effective bandshape has predominantly a Gaussian character which varies with the temperature
so that Θ = 1125cm−1 (T=0 K) and Θ = 1414cm−1 (T=300 K). Indeed, as shown in Figure 6.16 the absorption
spectrum at T=300 K can be well fitted using Gaussian lineshape with Θ = 1388cm−1 (FWHM=3270 cm−1 ). One
can see that at higher temperatures the deviation between the spectrum and its Gauss fit becomes even smaller.
In molecules the normal distribution of the electronic transition energies in the ensemble would give rise to a Gaussian
bandshape of the absorption band. However, the corresponding standard deviation is expected to be of the order
of 100 cm−1 , whereby a typical Gaussian bandwidth of the order of 1000 cm−1 appears to result from unresolved
vibronic progression. In general, this statement is supported by quantum chemical calculation of the model parameters.
In principle the effective bandwidth parameters can also be used for characterization and assignement of individual
electronic bands.
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
457
Profiles and Spectra with the orca asa Program
Figure 6.16: Absorption spectrum (blue) for T=300 K generated after orca asa run on the file
example004.inp. Red line represents the Gauss-fit of the calculated spectrum.
6.18.2.5 Example: Modelling of Absorption and Resonance Raman Spectra for the 1-1 Ag →
1-1 Bu Transition in trans-1,3,5-Hexatriene
The hexatriene molecule is characterized by 9 totally-symmetric normal modes which dominate vibrational structure
in absorption and are active in rR spectra corresponding to the strongly dipole-allowed 1 −1 Ag → 1 −1 Bu transition
around 40000 cm−1 . Except for some peculiarities related to the neglect of normal mode rotations in the excited
state the optical spectra are quite satisfactorily described by the IMDHO model.
The following input exemplifies simulation of absorption spectrum and rR spectra for an arbitrary predefined number
of excitation energies.
#
# example005.inp
#
# input for simulation of absorption and resonance Raman spectra
# using experimental values of transition energy and displacement
# parameters corresponding to the strongly allowed 1-1Ag 1-1Bu transition
# in trans-1,3,5-hexatriene
#
%sim
Model IMDHO
RRS_FWHM 10
end
$el_states
1
1 39800.0 150.00 0.0 1.0 0.0 0.0
$vib_freq_gs
9
1 354.0
2 444.0
3 934.0
4 1192.0
5 1290.0
6 1305.0
7 1403.0
8 1581.0
9 1635.0
$sdnc
9 1
1
1 0.55
2 0.23
3 0.23
4 0.82
5 0.485
6 0.00
7 0.085
8 0.38
9 1.32
After the orca asa run the following files will be created:
Figure 6.18: Resonance Raman spectra for 3 different excitation energies which fall in resonance
with 1 −1 Ag → 1 −1 Bu transition in trans-1,3,5-hexatriene.
NOTE
• By default the program provides rR spectra on an arbitrary scale since only relative rR intensities within a
single rR spectrum are of major concern in most practical cases. However, one can put rR spectra corresponding
to different excitation energies on the same intensity scale by providing the keyword RSISM=ASR in %sim block
460 6 Detailed Documentation
(RSISM – Raman Spectra Intensity Scaling Mode; ASR – All Spectra Relative). By default RSISM=SSR (SSR –
Single Spectrum Relative) for which each rR spectrum is normalized so that the most intense band in it has
intensity 1.0. The relative intensities of bands in rR spectra measured for different excitation energies can
be compared if they are appropriately normalized relative to the intensity of a reference signal (e.g. Raman
band of the solvent). We also keep in mind the possibility to extend our methodology in order to provide the
absolute measure of rR intensities in terms of the full or differential cross-sections.
• Within the harmonic model, for a single electronic state neither relative rR intensities nor absorption bandshapes
in the case of AbsScaleMode=Rel do depend on the values of the electronic transition dipole moment (unless it
is precisely zero).
In the example above resonance Raman spectra have been generated for all vibrational transitions with total excitation
number up to the value specified by the parameter RamanOrder. Its is also possible to make explicit specification of
vibrational states corresponding to various fundamental, overtone and combination bands via the $rr vib states
block. In such a case rR spectra involving only these vibrational transitions will be generated separately.
Each vibrational transition is specified via the subblock which has the following structure:
k
modes m1,m2,...mn
quanta q1,q2,...qn;
This means that the k-th transition is characteriezed by excitation numbers qi for modes mi so that corresponding
P
Raman shift is equal to ν = qi νi , where νi is vibrational frequency of the mode mi .
After the orca asa run the following files will be created in addition:
6.18.2.6 Example: Modelling of Absorption Spectrum and Resonance Raman Profiles for the
1-1 Ag → 1-1 Bu Transition in trans-1,3,5-Hexatriene
The following example illustrates an input for simulation of absorption bandshape and resonance Raman profiles
(RRP):
#
# example006.inp
#
# input for simulation of absorption and resonance Raman profiles
# using experimental values of transition energy and displacement
# parameters corresponding to the strongly allowed 1-1Ag 1-1Bu transition
# in trans-1,3,5-hexatriene
#
%sim
Model IMDHO
RamanOrder 2
end
$el_states
1
1 39800.0 150.00 0.0 1.0 0.0 0.0
$vib_freq_gs
9
1 354.000000
2 444.000000
3 934.000000
4 1192.000000
5 1290.000000
6 1305.000000
7 1403.000000
8 1581.000000
9 1635.000000
462 6 Detailed Documentation
$sdnc
9 1
1
1 0.55
2 0.23
3 0.23
4 0.82
5 0.485
6 0.00
7 0.085
8 0.38
9 1.32
The keyword RamanOrder=2 will invoke generation of rR profiles for all vibrational transitions with total excitation
number up to 2 in the range of excitation energies specified by the keywords RRPRange and NRRPPoints. Likewise,
rR profiles for the vibrational states given in the $rr vib states block will be generated separately. Since in most
cases only relative rR intensities are important, and one would be interested to compare absorption bandshape and
shapes of individual rR profiles, the keyword CAR = 0.8 is used to scale rR profiles for all vibrational transitions by a
common factor in such a way that the ratio of the maximum of all rR intensities and the maximum of absorption
band is equal to 0.8.
After the orca asa run the following files will be created:
• example006.o1.rrp.dat and example006.o2.rrp.dat contain rR profiles for vibrational transitions with total
excitation numbers 1 and 2, respectively. RR profiles for all fundamental bands (from the file example006.o1.rrp.dat)
are shown in Figure 6.19.
• example006.o1.info and example006.o1.info contain specification of vibrational transitions with total exci-
tation numbers 1 and 2, respectively, as well as corresponding Raman shifts.
Figure 6.19: Absorption spectrum and resonance Raman profiles of fundamental bands correspond-
ing to 1 −1 Ag → 1 −1 Bu transition in trans-1,3,5-hexatriene.
An absorption spectrum basically consists of a number of absorption bands. Each absorption band corresponds to
a transition of the ground electronic state to an excited electronic state. In molecules such transitions are usually
considerably broadened. In many cases there will be overlapping bands and one would need to deconvolute the broad
absorption envelope into contributions from individual transitions. Within the “Simple model” the orca asa program
enables fit of an absorption spectrum with a sum of standard lineshape functions (Gaussian, Lorentzian) or more
general Voigt functions. In most cases, one simply performs a “Gauss-Fit”. That is, it is assumed that the shape of
each individual band is that of a Gaussian function. Then one applies as many (or as few) Gaussians as are necessary
for an accurate representation of the absorption envelope. In order to explain the fitting procedures within the “Simple
model” let us consider an experimental absorption spectrum in Figure 6.20:
464 6 Detailed Documentation
Figure 6.20: Experimental absorption spectrum. Bars indicate transition energies which were used
for the initial guess in the input for spectral fitting.
As shown in Figure 6.20 one can identify roughly 7 electronic bands. The initial estimates of transition energies
corresponding to the maxima and shoulders in the absorption spectrum (indicated by bars in Figure 6.20) and rather
approximate values of inhomogeneous broadening and transition dipole moment components are specified in the
$el states block of the input file for the spectral fitting:
# example007.inp
#
# Input file for fitting of experimental absorption spectrum
#
%sim
model Simple
end
%fit
Fit true # Global flag to turn on the fit
AbsFit true # Flag to include absorption into the fit
method Simplex
WeightsAdjust true
end
#---------------------------------------------------------------------------
# Transition Gamma Sigma Transition Dipole Moment (atomic unit)
# Energy (cm**-1) (cm**-1) (cm**-1) Mx My Mz
#---------------------------------------------------------------------------
$el_states
7
1 11270 0.0 1000.00 1.0000 0.0000 0.0000
2 15100 0.0 1000.00 1.0000 0.0000 0.0000
3 20230 0.0 1000.00 1.0000 0.0000 0.0000
4 27500 0.0 1000.00 1.0000 0.0000 0.0000
5 31550 0.0 1000.00 1.0000 0.0000 0.0000
6 37070 0.0 1000.00 1.0000 0.0000 0.0000
7 39800 0.0 1000.00 1.0000 0.0000 0.0000
The functionality of the constraint block $el states c should be understood as follows: 1) 0 flag indicates that the
466 6 Detailed Documentation
corresponding parameter in the $el state block will not be varied in the fitting; 2) if the number corresponding to
a certain parameter coincides with the number of the corresponding electronic state this parameter will be varied
independently. Thus, the block $el states c in the input indicates that all transition energies, inhomogeneous
linewidths and x-components of the transition electric dipole moment will be varied independently, while homogeneous
linewidths, y- and z-components of the transition dipole moment will be fixed to their initial values.
• Since in conventional absorption spectroscopy one deals with the orientationally averaged absorption cross-
section, the signal intensity is proportional to the square of the transition electric dipole moment |M|2 . Thus,
the intensities do not depend on the values of the individual components of M as long as |M|2 = const.
Therefore, we have allowed to vary only Mx components. Otherwise there can be problems in convergence of
the fitting algorithm.
• The sum of the weights of experimental points which enter the mean absolute difference function employed in
the the minimization is always kept equal to the number of experimental points. In the case of equidistant
experimental photon energies all weights are assumed to be equal. However, in experimental electronic spectra
the density of spectral points can increase significantly upon going from high- to low-energy spectral regions,
which is due to the fact that experimental absorption spectra are initially acquired on the wavelength scale. In
such a case the quality of the fit can be noticeably biased towards low-energy spectral region. Therefore, it is
advisable to adjust relative weights of experimental points according to the their density which is controlled by
the keyword WeightsAdjust in the %fit block. Although this parameter is not crucial for the present example,
in general, it will provide a more balanced fit.
• The parameters E0Step, TMStep, E0SDStep in the %fit block specify the initial dimension of the simplex in
the space of ET , M, Θ and should roughly correspond to the expected uncertainty of initial guess on these
parameters in the $el states block relative to their actual values. The quality of the fit can noticeably
deteriorate if the parameters specifying initial steps are too low or too high.
The fit run of orca asa on file example007.inp will converge upon approximately 3600 function evaluations (for
MWADRelTol=1e-5). The results of the fit will be stored in file example007.001.inp which has the same structure as
the input file example007.inp. Thus, if the fit is not satisfactory and/or it is not fully converged it can be refined in
a subsequent orca asa run upon which file example007.002.inp will be created, and so on. Some model parameters
in intermediate files can be be additionally modified and/or some constraints can be lifted or imposed if so desired.
The output file example007.001.inp will contain fitted model parameters stored in the $el states block:
$el_states
7
1 11368.24 0.00 732.50 1.6290 0.0000 0.0000
2 15262.33 0.00 495.17 -0.2815 0.0000 0.0000
3 19500.08 0.00 1023.39 0.2300 0.0000 0.0000
4 26969.01 0.00 1832.30 1.4089 0.0000 0.0000
5 31580.41 0.00 1440.87 1.8610 0.0000 0.0000
6 35769.07 0.00 1804.02 1.5525 0.0000 0.0000
7 39975.11 0.00 1909.38 2.4745 0.0000 0.0000
The overall quality of the fit is determined by the parameter MWAD which upon convergence reaches the value of
≈0.009 (MWAD stands for Mean Weighted Absolute Difference).
After the orca asa run files absexp.fit.dat and absexp.fit.as.dat will be created. Both files contain the exper-
imental and fitted spectra which are shown in Figure 6.21 . In addition, the file absexp.fit.as.dat will contain
individual contributions to the absorption spectrum corresponding to different excited states.
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
467
Profiles and Spectra with the orca asa Program
Figure 6.21: Comparison of the experimental (black curve) and fitted (red) absorption spectra
corresponding to the fit run of orca asa on the file example007.inp. Blue curves
represent individual contributions to the absorption spectrum from each state.
Since there is a noticeable discrepancy between the fitted and experimental spectra around 1300 cm−1 (Figure 6.21) it
is worthwhile to refine the fit after adding parameters for a new state in the file example007.001.inp:
$el_states
8
1 11368.24 0.00 732.50 1.6290 0.0000 0.0000
... ... ...
8 13280.00 0.00 1000.00 1.000 0.0000 0.0000
$el_states_c
8
1 1 0 1 1 0 0
... ... ...
8 8 0 8 8 0 0
Actually, the character of the discrepancy in the present case is very similar to that in Figure 6.18 (section 6.18.2.4)
where a vibronically broadened absorption spectrum was fitted with a Gaussian lineshape. Thus, the poor fit in the
region around 1300 cm−1 is most likely due to the essentially asymmetric character of the vibronic broadening rather
than to the presence of another electronic band.
As shown in Figure 6.22 the refined fit leads to much better agreement between the experimental and fitted absorption
spectra (MWAD=0.0045).
Due to some peculiarities of the simplex algorithm for function minimization, you can still refine the fit by rerunning
orca asa on the file example007.002.inp! This leads to an even lower value of the parameter MWAD= 0.0038, and
therefore to better agreement of experimental and fitted spectra (even though the previous run has been claimed to
be converged).
468 6 Detailed Documentation
Figure 6.22: Comparison of the experimental (black) and fitted (red) absorption spectra correspond-
ing to the fit run of orca asa on the file example007.001.inp. Blue curves represent
individual contributions to the absorption spectrum from each state.
It is also possible to perform a fit using the same value of inhomogeneous linewidth for all electronic states. For this
purpose one needs to choose as a guess the same linewidth parameters in the $el states block:
$el_states
8
1 11118.58 0.00 1000.0 1.0687 0.0000 0.0000
2 13673.38 0.00 1000.0 -0.5530 0.0000 0.0000
3 21267.40 0.00 1000.0 0.3675 0.0000 0.0000
4 27024.71 0.00 1000.0 1.4041 0.0000 0.0000
5 31414.74 0.00 1000.0 1.7279 0.0000 0.0000
6 35180.77 0.00 1000.0 1.6246 0.0000 0.0000
7 39985.52 0.00 1000.0 2.5708 0.0000 0.0000
8 11665.01 0.00 1000.0 1.2332 0.0000 0.0000
$el_states_c
8
1 1 0 1 1 0 0
2 2 0 1 2 0 0
3 3 0 1 3 0 0
4 4 0 1 4 0 0
5 5 0 1 5 0 0
6 6 0 1 6 0 0
7 7 0 1 7 0 0
8 8 0 1 8 0 0
The constraint parameters for the inhomogeneous broadening were chosen to be 1, which means that formally Θ1
corresponding to the first state is varied independently while the linewidths {Θi } for other bands are varied in such a
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
469
Profiles and Spectra with the orca asa Program
way that the ratios Θi /Θ1 are kept fixed to their initial values, whereby the same linewidth parameter will be used for
all states.
Figure 6.23: Comparison of the experimental (black) and fitted (red) absorption spectra corre-
sponding to the fit run of orca asa on the file example007.002.inp in which equal
broadening was assumed for all electronic bands. Blue curves represent individual
contributions to the absorption spectrum from each state.
One can see (Figure 6.23) that the assumption of equal linewidths for all electronic bands leads to a rather pronounced
deterioration of the quality of the fit in the low-energy spectral range (MWAD=0.017). Apparantly, this discrepancy
can be fixed assuming more electronic states at higher energies.
NOTE
• The homogeneous linewidth parameters can also be included in the fit in a similar way. However, one can see
that in most cases they appear to be much smaller than corresponding Gaussian linewidth parameters.
• Gauss-fit of absorption spectra is coventionally performed assuming the same linewidth parameters for all bands.
However, since a large portion of Gaussian broadening is mainly due to the unresolved vibronic structure in the
spectra which can significantly vary depending on the nature of transition, the assumption of unequal Gaussian
bandwidths seems to be a physical one.
6.18.3.2 Example: Fit of Absorption and Resonance Raman Spectra for 1-1 Ag → 1-1 Bu
Transition in trans-1,3,5-Hexatriene
Below we provide an example of the fit of the lineshape parameters and {∆m } corresponding to the strongly dipole-
allowed 1-1 Ag →1-1 Bu transition in hexatriene. It is known that the most intense bands in rR spectra correspond
to the most vibronically active in absorption spectrum. For the IMDHO model this correlation is determined by
the values of {∆m }. Thus, the larger ∆, the larger is the rR intensity of a given mode and the more pronounced is
the progression in the absorption spectrum corresponding to this mode. In principle, if all vibrational transitions in
absorption are well resolved it is possible to determine {∆m } by a fit of the absorption spectrum alone. In practice
this task is ambiguous due to the limited resolution of the experimental absorption spectra. The observation of a rR
spectrum enables the identification of the vibrational modes that are responsible for the progression in the absorption
470 6 Detailed Documentation
spectrum, as well as a quantitative analysis in terms of {∆m }. The file example006.inp provides a brute-force
example on how to approach the fit employing the minimal possible experimental information: 1) An absorption
spectrum; 2) relative rR intensities of fundamental bands for a given excitation energy. The rR spectrum upon the
excitation in resonance with the 0-0 vibronic band at 39809 cm−1 is shown in Figure 6.12.
Figure 6.24: Experimental Resonance Raman spectrum corresponding to 1-1 Ag → 1-1 Bu transition
in trans-1,3,5-hexatriene.
The experimental rR spectrum has enabled the identification of seven vibrational modes that give rise to the most
intense resonance Raman bands. Therefore, they are expected to have the largest excited-state displacements and the
most pronounced effect on the vibrational structure of the absorption spectrum. Their vibrational frequencies have
been entered as input for the fit as shown below:
#
# example008.inp
#
# Input for fit of absorption and resonance Raman spectra
# corresponding to the strongly allowed 1-1Ag 1-1Bu transition
# in 1,3,5 trans-hexatriene.
#
# Parameters to be varied:
# 1) adiabatic minima transiton energy
# 2) homogeneous linewidth (Gamma)
# 3) dimensionless normal coordinate displacements of the
# excited-state origin
#
%sim
Model IMDHO
end
%fit
end
# The values specified in $el_states block serve as initial guess in the fit
$el_states
1
1 40000.0 200.00 0.0 1.0 0.0 0.0
modes 6
quanta 1;
7
int 46.0 1.0
modes 7
quanta 1;
The input of rR intensities for an arbitrary number of excitation energies follows the keyword $rrs exp block:
$rrs_exp
1 # number of rR spectra
1 1
The first “1” in the last line denotes the number of the rR spectrum for which specification starts below. If the second
number is the same as the number of the spectrum, then it means that only relative intensities for the 1st rR spectrum
are meaningful in the fit. If several spectra are given in the input then the second number may have a different value,
e.g.:
$rrs_exp
3 # number of rR spectra
1 2
...
This input is to be interpreted as indicating that 3 rR spectra are provided and the relative intensities for the 1st
spectrum are given on the same scale as the 2nd one that will be accounted for in the fit. The value of the excitation
energies and the number of vibrational transitions specified are indispensable within the blocks specifying intensities
for each rR spectrum.
Following the number of vibrational transitions given by the keyword NTr one has to specify each vibrational transition
and its intensity. Thus, in the present case there are seven subblocks with the following structure:
k int I W
modes m1,m2,...mn
quanta q1,q2,...qn;
This means that the k-th transition has intensity I and weight W in the mean absolute difference function that is
used for the minimization (W is an optional parameter). The following 2 lines specify the vibrational transitions by
P
providing excitation numbers qi for modes mi so that the corresponding Raman shift is equal to ν = , where νi is
qi νi
vibrational frequency of the mode mi .
The parameters that are to be varied are specified within the constraint blocks $el states c and $sdnc c. Both
blocks have the same structure and number of parameters as $el states and $sdnc, respectively. A parameter from
the $el states block is supposed to be independently varied if its counterpart from the $el states c block is equal
to the number of the electronic state. Likewise, a parameter from the $sdnc block is supposed to be independently
varied if its counterpart from the $sdnc c block is equal to the number of the normal mode. Model parameters that
are set to 0 in the corresponding constraint blocks are not varied in the fit. The values of the following parameters
may be important for the quality of the fit:
474 6 Detailed Documentation
• CWAR in the %fit block specifies the weight of absorption relative to the weight of rR intensities in the difference
function to be minimized. If this parameter was not specified the fit would be almost insensitive to the rR
intensities in the input, since typically the number of experimental absorption points is much larger than the
number of rR transitions in the input. In most cases the value of CWAR in the range 1.0–5.0 is a good choice
since the error in the measured experimental intensity is expected to be much smaller for absorption than for
resonance Raman.
• SDNCStep in the %fit block specifies the initial dimension of the simplex in the space of {∆m } and should
roughly correspond to the expected uncertainty of initial guess on {∆m } in the $sdnc block compared to their
actual values. You can notice in the present example that if this parameter is too large (>2.0) or too small
(<0.4) the quality of the fit may significantly deteriorate
• Although the default initial dimensions of the simplex have reasonable values for different types of parameters
it may turn out to be helpful in some cases to modify the default values:
The fit run of orca asa on the file example008.inp will converge upon approximately 700 function evaluations (for
MWADRelTol=1e-4). The results of the fit will be stored in file example008.001.inp which has the same structure as
the input file example008.inp. Thus, if the fit is not satisfactory and/or it is not fully converged it can be refined in
subsequent orca asa run upon which file example008.002.inp will be created, and so on. Some model parameters in
intermediate files can be be additionally modified and/or some constraints can be lifted if so desired. The output file
example008.001.inp will contain fitted displacement parameters {∆m }stored in the $sdnc block:
$sdnc
7 1
1
1 0.675000
2 -0.194484
3 -0.217527
4 0.811573
5 0.529420
6 -0.149991
7 1.314915
In the present example, these parameters are actually in very close agreement with those published for the hexatriene
molecule!
The overall quality of the fit is determined by the parameter MWAD which upon convergence reaches the value of
≈0.027. The fitted rR intensities are presented in the commented lines next to the experimental rR intensities in file
example008.001.inp:
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
475
Profiles and Spectra with the orca asa Program
$rrs_exp
1
1 1 3.495285e+001
Ex 39809.00
NT 7
1
Int 10.0 1.0 # simulated intensity: 1.000982e+001
modes 1
quanta 1;
2
Int 5.0 1.0 # simulated intensity: 8.976285e-001
modes 2
quanta 1;
3
Int 1.5 1.0 # simulated intensity: 1.255880e+000
modes 3
quanta 1;
4
Int 21.0 1.0 # simulated intensity: 1.761809e+001
modes 4
quanta 1;
5
Int 7.5 1.0 # simulated intensity: 7.499749e+000
modes 5
quanta 1;
6
Int 2.0 1.0 # simulated intensity: 6.014466e-001
modes 6
quanta 1;
7
Int 46.0 1.0 # simulated intensity: 4.600071e+001
modes 7
quanta 1;
The file hex-abs.fit.dat will contain the experimental and fitted absorption spectra in ASCII format which can be
plotted in order to visualize the quality of absorption fit (Figure 6.25).
NOTE
• The more experimental rR intensities are included in the analysis the more reliable is the fit. In principle it is
possible to obtain fully consistent results even if only a limited number of vibrational transitions is provided.
However, in such a case it is desirable to include into analysis at least a single Raman transition involving the
mode for which ∆ is to be determined.
• The quality of the fit can be improved if the IMDHOFA model is invoked and excited-state vibrational
frequencies are allowed to vary.
• Due to the initial guess and dimension of the simplex, as well as some peculiarities of the simplex algorithm for
function minimization, you can still refine the fit by rerunning orca asa on file example008.001.inp that may
lead to an even lower value of the parameter MWAD = 0.021, and therefore to better agreement of experimental
and fitted spectra (even though the previous run has been claimed to be converged).
Figure 6.25: Experimental (black) and fitted (red) absorption spectrum corresponding to 1-1 Ag →
1-1 Bu transition in 1,3,5 trans-hexatriene.
1. Fit the preresonance region below the 0-0 vibronic band with a single Lorentzian band, from which the
adiabatic transition energy E0 , and homogeneous linewidth Γ are obtained. The range for fit of the
absorption spectrum can be specified by the AbsRange keyword in the %fit block.
2. Fix E0 and Γ, and optimize {∆m } fitting the entire spectral range and rR intensities.
6.18.3.3 Example: Single-Mode Fit of Absorption and Fluorescence Spectra for 1-1 Ag →
1-1 B2u Transition in Tetracene
In this section we provide an example and discuss the most important aspects of joint fit of fluorescence and absorption
spectra. Figure 6.26 displays the experimental emission and absorption spectra corresponding to 1-1 Ag → 1-1 B2u
transition in tetracene.
Both spectra show pronounced effective vibrational progressions that are dominated by 3 and 5 peaks, respectively.
As can be shown on the basis of quantum chemical calculations this progression has essentially multimode character.
However, the experimental spectra can be well fitted under the assumption of a single vibronically active mode. The
input has the following structure:
#
# example009.inp
#
# Parameters to be varied:
# 1) adiabatic minima transition energy
# 2) homogeneous and inhomogeneous linewidths
# 3) normal mode frequency and corresponding dimensionless displacement of the
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
477
Profiles and Spectra with the orca asa Program
Figure 6.26: Deconvoluted absorption (red) and fluorescence (blue) spectra of tetracene in cyclo-
hexane upon the assumption of a single vibronically active mode. The black solid lines
represent experimental spectra.
# excited-state origin
#
%sim
Model IMDHO
EnInput E0 # we assume adiabatic minima separation energies
end
%fit
Fit true # global flag to turn on the fit
AbsFit true # flag to include absorption spectrum into the fit
FlFit true # flag to include fluorescence spectrum into the fit
WeightsAdjust true
end
$el_states
2
1 21100.00 100.00 100.00 1.0000 0.0000 0.0000
2 24000.00 100.00 1000.00 1.0000 0.0000 0.0000
$el_states_c
2
1 1 1 1 0 0 0
2 2 2 2 2 0 0
$abs_bool
2
1 1
2 1
$fl_bool
2
1 1
2 0
$ss
2
1 100.000000
2 0.000000
$ss_c
2
1 1
2 0
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
479
Profiles and Spectra with the orca asa Program
$vib_freq_gs
1
1 1500.0
$vib_freq_gs_c
1
1 1
$sdnc
1 2
1 2
1 2.0000000 0.000000
$sdnc_c
1 2
1 2
1 1 0
The parameter CWAF=1.0 in the %fit block specifies the weight of absorption relative to the weight of fluorescence in
the difference function to be minimized. If this parameter was not specified the quality of the fit would be biased
towards the spectrum with a larger number of experimental points. In some typical situations where the error in the
measured experimental intensity is expected to be smaller for absorption than for emission it is desirable to choose
the value of CWAF to be more than 1.0.
In order to account for a broad featureless background signal in the absorption spectrum above 24000 cm−1 , the
second band was included into the analysis and approximated with a Voigt lineshape which means also that the
corresponding frequency in the $vib freq gs block and displacement parameter in the $sdnc block are fixed to zero
in the fit. Thus, the $el states block contains an initial guess on the transition energies, transition electric dipole
moments and linewidth parameters for 2 states:
$el_states
2
1 21100.00 100.00 100.00 1.0000 0.0000 0.0000
2 24000.00 100.00 1000.00 1.0000 0.0000 0.0000
The initial value of the adiabatic minima separation energy for the first state was approximated by the energy
corresponding to the first vibronic peak in the absorption spectrum (21100 cm−1 ). The transition energies and
linewidth parameters are varied independently as indicated in the $el states c block. Since we allow to fit only
bandshapes, but not the overall intensities of the spectra, only relative absolute values of the transition electric dipole
moments of two bands are important. Therefore it is reasonable to fix all components of the transition moment for
the first state and vary only Mx component for the second one:
$el_states_c
2
1 1 1 1 0 0 0
2 2 2 2 2 0 0
Since we assume the absorption by both states and emission only from the first one, it is necessary to include Boolean
arrays $abs bool and $fl bool which specify states which will be included in the treatment of the absorption and
fluorescence spectra, respectively:
480 6 Detailed Documentation
$abs_bool
2
1 1 # 1 indicates that the corresponding state will be included in the calculation of
2 1 # absorption
$fl_bool
2
1 1
2 0 # 0 indicates that the corresponding state will be excluded from the calculation
# of emission spectrum
We need also to vary the value of vibrational frequency of the mode which determines separation of vibrational peaks
in the spectra. This is done via the constraint block $vib freq gs c:
$vib_freq_gs_c
1
1 1
Note that it is meaningless to include into the treatment the Stokes shift for the second state which give rise to the
background signal in the absorption since the corresponding emission is not present. Therefore λ for the second state
is fixed to zero as indicated in the $ss block and its constraint counterpart $ss c:
$ss
2
1 100.000000 # initialization of the Stokes shift for the 1st electronic state
2 0.000000
$ss_c
2
1 1 # the Stokes shift for the 1st electronic state will be varied in the fit
2 0 # the Stokes shift for the 2nd electronic state will be fixed in the fit
The fit run of orca asa on file example009.inp will converge upon approximately 700 function evaluations (for
MWADRelTol=1e-4). The file example009.001.inp will contain the fitted effective values of the vibrational frequency
and dimensionless displacement: ω = 1404cm−1 , ∆ = 1.35. One can notice that the fit is rather poor in the low-
and high-energy edges of the absorption and fluorescence spectra, respectively (Figure 6.26). The source of this
discrepancy is the single-mode approximation which was employed here. The quality of the fit can be significantly
improved assuming several modes with non-zero displacement parameters. Note that in such a case the proper guess
on the number of active modes and corresponding dimensionless displacements can be deduced from quantum chemical
calculations.
In this section we finally connect the spectra simulation algorithms to actual quantum chemical calculations and
outline a detailed approach for the analysis of absorption, fluorescence and resonance Raman spectra within the
IMDHO model. Our procedure becomes highly efficient and nearly automatic if analytical excited state derivatives
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
481
Profiles and Spectra with the orca asa Program
with respect to nuclear displacements are available. However, this availability is not mandatory and hence, spectral
predictions may as well be achieved by means of normal mode scan calculations for high-level electronic structure
methods for which analytic gradients have not been implemented.
6.18.4.1 Example: Quantum-Chemically Assisted Analysis and Fit of the Absorption and
Resonance Raman Spectra for 1-1 Ag → 1-1 Bu Transition in trans-1,3,5-Hexatriene
The following input file for an ORCA run invokes the calculation of the excited-state origin displacements along all
normal modes by means of energy and excited state gradient calculations at the ground-state equilibrium geometry.
The method is valid for the IMDHO model for which the excited-state energy gradient along a given normal mode
and corresponding origin shift are related in a very simple way.
#
# example010.inp
#
# TDDFT BHLYP Normal Mode Gradient Calculation
#
# The keyword NMGrad invokes the normal mode gradient calculation
#
! RKS BHandHLYP TightSCF SV(P) NMGrad
%cis NRoots 1
triplets false
end
%rr
# the nuclear Hessian must have been calculated before - for example by a
# DFT calculation.
HessName= "hexatriene.hess"
* xyz 0 1
C -0.003374 0.678229 0.00000
H -0.969173 1.203538 0.00000
C 1.190547 1.505313 0.00000
H 2.151896 0.972469 0.00000
C 1.189404 2.852603 0.00000
H 0.251463 3.423183 0.00000
H 2.122793 3.426578 0.00000
C 0.003374 -0.678229 0.00000
H 0.969172 -1.203538 0.00000
C -1.190547 -1.505313 0.00000
H -2.151897 -0.972469 0.00000
C -1.189404 -2.852603 0.00000
H -0.251463 -3.423183 0.00000
482 6 Detailed Documentation
In the ORCA run the TDDFT excited state gradient calculations are performed on top of a TDDFT calculation.
Note, that the numbers of the excited-states which have to be included into analysis and input file for spectral
simulations must be specified after the States keyword in the %rr block. They should also be consistent with the
required number of roots in the %tddft block. The 1-1 Bu excited state appears to be the 1st root in the TDDFT
calculation. Therefore, NRoots=1 in the %tddft block, and States=1 in the %rr block. One should also provide the
name of the file containing the nuclear Hessian matrix via the HessName keyword in the %rr block. Here we used the
.hess file obtained in a frequency calculation at the BHLYP/SV(P) level of theory.
After the ORCA calculation you will find in your directory a file called example010.asa.inp that is appropriate to be
used together with the orca asa program as defined in the preceding sections.
#
# example010.asa.inp
#
# ASA input
#
%sim
model IMDHO
method Heller
AbsRange 5000.0, 100000.0
NAbsPoints 0
RRS_FWHM 10.0
AbsScaleMode Ext
FlScaleMode Rel
RamanOrder 0
EnInput E0
CAR 0.800
end
%fit
Fit false
AbsFit false
FlFit false
RRPFit fsalse
RRSFit false
method Simplex
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
483
Profiles and Spectra with the orca asa Program
WeightsAdjust true
ExpFlScaleMode Rel
ExpAbsScaleMode Rel
CWAR -1.000
CWAF -1.000
NMaxFunc 100
MWADRelTol= 1.000000e-004
SFRRPSimStep= 1.000000e+002
SFRRSSimStep 1.000000e+002
FREQGStep 1.000000e+001
FREQEStep 1.000000e+001
E0Step 3.000000e+002
SSStep 2.000000e+001
TMStep 5.000000e-001
GammaStep 5.000000e+001
E0SDStep 5.000000e+001
SDNCStep 4.000000e-001
end
$el_states
1
1 42671.71 100.00 0.00 1.0725 3.3770 -0.0000
$vib_freq_gs
12
1 359.709864
2 456.925612
3 974.521651
4 1259.779018
5 1356.134238
6 1370.721341
7 1476.878592
8 1724.259894
9 1804.572974
10 3236.588264
11 3244.034359
12 3323.831066
$sdnc
12 1
1
1 -0.594359
2 0.369227
3 -0.132430
484 6 Detailed Documentation
4 -0.727616
5 0.406841
6 -0.105324
7 0.177617
8 -0.090105
9 -1.412258
10 0.048788
11 0.021438
12 0.008887
This input file can be used to construct theoretical absorption and rR spectra. In order to compare experimental
and theoretical rR spectra, it is necessary to use in both cases excitation energies that are approx-
imately in resonance with the same vibrational transitions in the absorption spectrum. Therefore,
in the case of the absorption spectrum with resolved or partially resolved vibrational structure it is
necessary to modify the transition energies in the %el states such that they coincide with the exper-
imentally observed 0-0 vibrational peaks. It is also desirable to roughly adjust homogeneous and, possibly,
inhomogeneous linewidth parameters such that the experimental and calculated absorption spectra show similar
slopes in the preresonance region (below the 0-0 transition). Then the assignment of experimental rR spectra can
be done on the basis of comparison with the theoretical rR spectra calculated for the corresponding experimental
excitation energies. For the sake of consistency and simplicity it is better to use those excitation energies which fall
into the preresonace region and/or are in resonance with the 0-0 transition. In the case of diffuse absorption
spectra (i.e. those not showing resolved vibrational structure) it is also necessary to adjust the theo-
retical transition energies and linewidth parameters such that experimental and calculated positions
of absorption maxima roughly coincide, and corresponding slopes below the maxima have a similar
behavior. According to above mentioned considerations one needs to modify the %el states block in the file
example010.asa.inp:
$el_states
1
1 39808.0 150.00 0.00 1.0725 3.3770 -0.0000
The calculated absorption spectrum obtained by providing AbsScaleMode= Rel, AbsRange= 39000, 49000 and
NAbsPoints= 2000 is shown in Figure 6.27. Upon comparison with the experimental spectrum one can notice that
the BHLYP functional gives relatively small discrepancies with somewhat lower intensity in the low-frequency edge
and larger intensity on the high-energy side of the spectrum. Besides, there is a noticeable mismatch in the separation
between individual vibronic peaks which is due to overestimation of vibrational frequencies by the BHLYP functional
(typically by ≈ 10%).
You can arbitrarily vary various normal coordinate displacements in %sdnc block within 10–30% of their values in
order to observe modifications of the calculated spectrum. This will tell you how these parameters influence the
spectrum and probably it will be possible to obtain better initial guesses for the fit. In the present example you will
find that reduction of the absolute value of the displacement parameter corresponding to the 9th mode by ≈ 10%, and
reduction of vibrational frequencies by ≈ 10% can noticeably improve the spectral envelope. Such a quick analysis
suggests that experimentally observed peaks in the absorption spectrum represent different vibrational transitions
corresponding to a single electronically excited state rather than to different electronic excitations. This conclusion
will be confirmed upon establishing the fact that the absorption and rR spectra can be successfully fitted based on the
assumption of a single electronic transition.
In order to calculate the rR spectrum for experimental excitation energies you need to specify its value through RRSE
keyword in %sim block as well as possibly to modify the parameters related to the spectral range and linewidth of rR
bands which are suitable for comparison with the experimental rR spectrum:
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
485
Profiles and Spectra with the orca asa Program
Figure 6.27: Experimental and calculated at the BHLYP/SV(P) and B3LYP/SV(P) levels of theory
absorption (left panel) and rR spectra (right panel) corresponding to 1-1 Ag → 1-1 Bu
transition in trans-1,3,5-hexatriene.
The calculated rR spectrum is shown in Figure 6.27. In the input we have invoked the calculation of rR intensities for
the transitions with up to 3 vibrational quanta in the final vibrational state (RamanOrder = 3). Make sure that the
rR intensity pattern in the given spectral range does not change noticeably upon further increase of this parameter.
Typically, the larger are the normal coordinate displacements the greater order of Raman scattering is required in the
calculation to account for all the most intense transitions in the rR spectrum. The inclusion of vibrational transitions
beyond the fundamentals is a particular feature of the orca asa program.
Comparison of the calculated and experimental rR spectra (Figure 6.27) mainly shows discrepancies in the values of
the Raman shifts that are mainly related to the low accuracy of the vibrational frequencies obtained at the BHLYP
486 6 Detailed Documentation
level (typically overestimated by ≈ 10%). However, the intensity patterns of the calculated and experimental rR
spectra show very nice agreement with experiment that is already sufficient to assign the experimental peaks to
individual vibrational transitions. This can be done upon examination of file example010.asa.o3.rrs.39808.stk
which provides intensity, Raman shift, and specification for each vibrational transition. It is actually one of the most
consistent procedures that enables one to identify different fundamental, overtone and combination bands in the
experimentally observed rR spectrum. Such an assignment is a necessary prerequisite for the fit. The current example
is relatively straightforward since the spectral region 1–1700 cm−1 is actually dominated by fundamental bands while
the most intense overtone and combination transitions occur at higher frequencies. However, in many cases even the
low-frequency spectral range is characterized by significant contributions from overtone and combination bands that
sometimes are even more intense than fundamental transitions! Thus, quantum chemical calculations can greatly
facilitate the assignment of experimental rR bands.
After having performed the assignment it is advisable to discard those modes from the analysis that are not involved
in any of the experimentally observed fundamental, overtone, or combination rR bands with noticeable intensities. In
the present example these are the modes 6, 8, 10–12 from the input file given above. For these modes it is implied
that the fitted displacement parameters are zero. You will find that the calculated displacement values are rather
small indeed. Also it is advisable to change the ground-state vibrational frequencies in the $vib freq gs block to
their experimental values.
#
# example010-01.asa.inp
#
# ASA input
#
%sim
model IMDHO
method Heller
end
%fit
Fit true
AbsFit true
RRSFit true
AbsExpName "hex-abs.dat"
ExpAbsScaleMode Rel
CWAR 5.0
NMaxFunc 1000
SDNCStep 0.5
end
$el_states
1
1 39808.0 150.00 0.00 -0.8533 -3.3690 -0.0000
$el_states_c
1
1 1 1 0 0 0 0
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
487
Profiles and Spectra with the orca asa Program
$vib_freq_gs
7
1 354.0
2 444.0
3 934.0
4 1192.0
5 1290.0
6 1403.0
7 1635.0
$sdnc
7 1
1
1 -0.594359
2 0.369227
3 -0.132430
4 -0.727616
5 0.406841
6 0.177617
7 -1.412258
$sdnc_c
7 1
1
1 1
2 2
3 3
4 4
5 5
6 6
7 7
$rrs_exp
1
1 1
Ex 39809.0
NTr 11
1
int 10.0 1.0
modes 1
quanta 1;
2
int 5.0 1.0
modes 2
quanta 1;
3
int 1.5 1.0
modes 3
quanta 1;
4
int 21.0 1.0
modes 4
quanta 1;
488 6 Detailed Documentation
5
int 7.5 1.0
modes 5
quanta 1;
6
int 2.0 1.0
modes 6
quanta 1;
7
int 46.0 1.0
modes 7
quanta 1;
8
int 6.8 1.0
modes 1, 7
quanta 1, 1;
9
int 4.0 1.0
modes 2, 7
quanta 1, 1;
10
int 2.0 1.0
modes 3, 7
quanta 1, 1;
11
int 17.0 1.0
modes 7
quanta 2;
In addition to the experimental intensities of fundamental bands the input file also contains the information about
some overtone and combination transitions. Note that it is not really necessary to include all of them them into the
fit, in particular if some of the rR bands are strongly overlapping with each other.
Fitted normal coordinate displacements of the excited-state origin show nice agreement with the published values:
$sdnc
7 1
1
1 -0.638244
2 0.455355
3 -0.229126
4 -0.854357
5 0.501219
6 0.197679
7 -1.292997
NOTE
• It is not really important to employ the BHLYP/SV(P) method in the frequency calculations in order to
obtain the .hess file (this was merely done to be consistent with the TDDFT/BHLYP/SV(P) method for the
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
489
Profiles and Spectra with the orca asa Program
excited-state model parameters calculation). The frequency calculations can for example be carried out at the
BP86/TZVP or RI-SCS-MP2/TZVP level of theory. This will provide displacements pattern very similar to
that of the BHLYP/SV(P) method, but much more accurate vibrational frequencies which will further facilitate
the assignment of rR spectra (Figure 6.27). However, such a procedure can be inconsistent if the two methods
give noticeably different normal mode compositions and/or vibrational frequencies. From our experience it can
lead to significant overestimation of the excited-state displacements for some low-frequency modes.
• It is known that predicted dimensionless normal coordinate displacements critically depend on the fraction
of the “exact” Hartree-Fock exchange (EEX) included in hybrid functionals. In general no universal amount
of EEX exists that provides a uniformly good description for all systems and states. Typically, for a given
molecule either the BHLYP/TZVP (50% of EEX) or B3LYP/TZVP (20% of EEX) methods yields simulated
spectra that compare very well with those from experiment if vibrational frequencies are appropriately scaled.
In order to compare experimental and theoretical rR spectra, it is necessary to use in both cases excitation
energies that are approximately in resonance with the same vibrational transitions in the absorption
spectrum. Therefore, in the case of diffuse absorption spectra (i.e. those not showing resolved vibrational structure)
one needs to adjust the transition energies and linewidth paramters in the %el states block such that the envelopes
of the experimental and theoretical spectra rouhgly coincide, and then to employ experimental values of excitation
energies to construct theoretical rR spectra. Typically in the case of diffuse absorption spectra rR profiles are rather
smooth. Therefore, even though excitation energies are not in resonance with the same vibrational transition in the
absorption spectrum, the rR spectra are not expected to vary significantly in the case of such mismatch.
In the case of the absorption spectrum with resolved or partially resolved vibrational structure it is necessary to
modify the transition energies in the %el states block such that the calculated and experimentally observed 0-0
vibrational peaks coincide, and modify linewidth parameters so that the low-energy slopes in the calculated and
experimental spectra have a similar behavior.
Consider a single-mode model system for which “experimental” and calculated absorption spectra are shown in
Figure 6.28.
Comaprison of the calculated and experimental spectra shows that some adjustment of the linewidth parameters
is neceassy before construction of theoretical rR spectra. One can directly compare calculated and experimental
rR spectra upon the excitation at 16200 cm−1 which is in resonance with the 0-0 vibronic band. However, it is
not consisitent to use experimental value of the excitation energy in the calculation of rR spectrum which is in
resonance with one of the other vibronic bands since the separation between vibartional peaks in the experimental and
calculated spectra is different whereby positions of the peaks in both spectra do not coincide. Instead one should
use the excitaition energy which corresponds to the same vibronic peak in the calculated absorption
spectrum as in the experimental one. Alternatively, one can adjust theoretical value of vibrational frequency
such that positions of corresponding vibronic peaks in the spectra coincide, and then use experimental values of
excitation energies for the calculation of rR spectra.
6.18.4.3 Example: Normal Mode Scan Calculations of Model Parameters for 1-1 Ag → 1-1 Bu
Transition in trans-1,3,5-Hexatriene
If excited state gradients are not available (which is the case for many of the electronic structure methods supported by
ORCA), you have to resort to a more laborious procedure – single point calculations at geometries that are displaced
490 6 Detailed Documentation
Figure 6.28: Experimental and theoretical absorption spectra for a single-mode model system. The
calculated spectrum is adjusted such that the position of 0-0 peak coincide with the
experimental one.
along the various normal modes of the system. This roughly corresponds to taking numerical derivatives – however,
once this extra effort is invested more information can be obtained from the calculation than what would be possible
from a analytic derivative calculation.
The present example illustrates the application of normal mode scan calculations for the evaluation of excited state
harmonic parameters that are necessary to simulate optical spectra within the IMDHO model. This method can be
applied with any method like CIS, CASSCF, MRCI or TD-DFT.
The reference wavefunctions for the multireference calculations reported below are of the state-averaged CASSCF
(SA-CASSCF) type. The complete active space CAS(6,6) includes all 6 valence shell .π-orbitals. The average is taken
over the first four states which was found necessary in order to include the ground state and the strongly allowed
11 Bu state.
#
# example011.inp
#
# CASSCF normal mode scan calculations
#
* xyz 0 1
C -0.002759 0.680006 0.000000
H -0.966741 1.204366 0.000000
C 1.187413 1.500920 0.000000
6.18 Simulation and Fit of Vibronic Structure in Electronic Spectra, Resonance Raman Excitation
491
Profiles and Spectra with the orca asa Program
%scf
rotate {23,27,90} end
end
%casscf
nel 6
norb 6
mult 1
nroots 4
end
* xyz 0 1
C -0.002759 0.680006 0.000000
H -0.966741 1.204366 0.000000
C 1.187413 1.500920 0.000000
H 2.146702 0.969304 0.000000
C 1.187413 2.850514 0.000000
H 0.254386 3.420500 0.000000
H 2.116263 3.422544 0.000000
C 0.002759 -0.680006 0.000000
H 0.966741 -1.204366 0.000000
C -1.187413 -1.500920 0.000000
H -2.146702 -0.969304 0.000000
C -1.187413 -2.850514 0.000000
H -0.254386 -3.420500 0.000000
H -2.116263 -3.422544 0.000000
*
%casscf
nel 6
norb 6
mult 1
492 6 Detailed Documentation
nroots 4
end
%rr
HessName "hexatriene_bp86.hess"
NMList 10,11,18,24,26,28,29,31,32
NSteps 6
FreqAlter true
EnStep 0.0001
State 3
end
* xyz 0 1
C -0.002759 0.680006 0.000000
H -0.966741 1.204366 0.000000
C 1.187413 1.500920 0.000000
H 2.146702 0.969304 0.000000
C 1.187413 2.850514 0.000000
H 0.254386 3.420500 0.000000
H 2.116263 3.422544 0.000000
C 0.002759 -0.680006 0.000000
H 0.966741 -1.204366 0.000000
C -1.187413 -1.500920 0.000000
H -2.146702 -0.969304 0.000000
C -1.187413 -2.850514 0.000000
H -0.254386 -3.420500 0.000000
H -2.116263 -3.422544 0.000000
*
The file containing the hessian matrix ("hexatriene bp86.hess") was obtained from the BP86/TZVP frequency
calculations. The keyword NMList provides the list of the normal modes to be scanned. These should be only the
totally symmetric vibrations, since only they can be significant for absorption and resonance Raman spectra within
the constraints of the IMDHO model. The FreqAlter flag indicates whether frequency alterations are assumed in
the post-scan potential surface fit. The Parameter EnStep is used to select the appropriate step during the scan
calculations. The value is chosen such that the average energy change (in hartree) in both directions is not less than
this parameter.
The conductor like screening model developed by Klamt is – within the restrictions posed by a dielectric theory – an
efficient and elegant way to calculate the energies, structures and properties of molecules in solution. The solvent is
represented as a dielectric polarizable continuum. In the COSMO approach it is initially assumed to be a perfect
conductor which completely shields (‘screens’) the charge density of the solute. The interaction is then scaled to a
finite dielectric constant with the simple factor:
ε−1
f (ε) = (6.252)
ε+x
where x = 12 has been found most useful. Hence the name of the method COSMO. The critical step is to construct a
molecular surface which embeds the solute. A lot of experience indicates that 1.2 times the Van der Waals surface is a
good choice. This cavity is then disretized into segments and the charge density on each segement is assumed to be
6.19 The COSMO Solvation Model 493
constant. If the discretization is sufficiently smooth one obtains a good approximation to the continuum limit. The
principal idea is that the charge density of the solute (nuclear and electronic) creates compensating charges on the
surface which then, in turn, interact with the molecular charge density. Thus, an iterative process is necessary in order
to find self-consistent values of the screening charges and the molecular charge density. This is readily incorporated
into the self-consistent field process with reasonable computational cost (30-40% increase in the computation time
typically). Due to the mathematical simplicity of the model analytic gradients can be formulated and implemented
thus opening the way for efficient geometry optimization in solution. Likewise, the first order response to external
properties can be calculated in a rather similar way (using the response density) and finally solvent effects on transition
energies can also be calculated.
The use of the COSMO model is rather simple. One can either use the simple-input lines such as:
! COSMO(solvent)
• Water (80.4, 1.33), Acetonitrile (36.6, 1.344), Acetone (20.7, 1.359), Ammonia (22.4, 1.33), Ethanol (24.3,
1.361), Methanol (32.63, 1.329), CH2Cl2 (9.08, 1.424), CCl4 (2.24, 1.466), DMF (38.3, 1.430), DMSO (47.2,
1.479), Pyridine (12.5, 1.510), THF (7.25, 1.407), Chloroform (4.9,1.45), Hexane (1.89, 1.375), Toluene (2.4,
1.497).
Alternatively, the model is invoked by giving a %cosmo block and specifying the solvent dielectric constant and
refractive index (the latter is used only for excited state calculations using the CIS or MRCI modules).
%cosmo epsilon 80
refrac 1.33
end
A number of technical parameters can be set. Most important, the radius used for cavity construction is accessed
by:
Reasonable defaults are available for the whole periodic table. In particular, the values for H,C,N,O,F,Cl,Br are
optimized values and should probably not be changed. ORCA implements three technical variants for the calculation
of the potential on the surface:
The numeric integration is particularly efficient in the framework of DFT for the potential and only slightly less
accurate than the analytic integration. It might be worth a try (in particular since you have a numerical integration
noise anyways in the calculation of the exchange-correlation energy)! For the Fock matrix update the numeric
integration produces a somewhat larger error which may add up to a millihartree or so for larger molecules. Since the
analytic Fock matrix update is fast the semianalytic option may be an alternative to the fully analytic treatment.
However, at the present level of code optimization there is not so much difference in computation times.
These values influence the cavity construction and are explained in detail in the original publications. They should
rarely be touched.
After carrying out the calculation one has a modified total energy and in the printout of the total energy one additional
term appears:
Components:
Nuclear Repulsion : 31.37089639 Eh 853.62405 eV
Electronic Energy : -145.60507632 Eh -3962.01605 eV
COSMO(ediel) : -0.00510803 Eh -0.13899 eV
The COSMO(ediel) value is the stabilization of the molecular energy by the salvation (note – ETOT-E(diel) is not
the gas phase energy since the molecular charge density is self-consistenly polarized in the COSMO calculation).
The dielectric energy is already contained in the value of the total energy printed which needs not be corrected by
COSMO(ediel) further. Note that COSMO(ediel) is half the interaction energy of the solute and the solvent since the
other half is spent to polarize the solvent!
One subtlety is the presence of a little bit of molecular charge outside the cavity which is inconsistent with the model.
This is handled in COSMO by the “outlying charge correction” which is computed at the end of the SCF calculation
If you use the value of the total energy for example to compute relative energies this value should be used. The
value of the outlying charge correction itself is usually small. It is not added to the SCF energy since it is added
non-variationally and would be inconsistent with geometry optimization.
6.20 SMD solvent model 495
SMD is an implementation of SMD CDS algorithm from the Crammer and Truhlar group citeCrammer2009JPCB.
6.20.1 Method
SMD solvation model bases on the quantum mechanical charge density of a solute molecule interacting with a
continuum description of the solvent. In the model the full solute electron density is used without defining partial
atomic charges and the solvent is not represented explicitly but rather as a dielectric medium with the surface tension
at the solute-solvent boundary. SMD is a universal solvation model for its applicability to any charged or uncharged
solute in any solvent or liquid medium for which a few key descriptors are known (in particular, dielectric constant,
refractive index, bulk surface tension, and acidity and basicity parameters). Neglected the concentration contribution,
the model separates the observable solvation free energy into two main components,
In ORCA, the first component is the bulk electrostatic contribution arising from a self-consistent reaction field
treatment that involves the electrostatic interaction using the Conductor-like Screening Model (COSMO). However the
radii are set to ”intrinsic atomic Coulomb radii”. The second component called the cavity-dispersion solvent-structure
(CDS) term is the contribution resulting from short-range interactions between the solute and solvent molecules
in the first solvation shell. This contribution is a sum of terms that are proportional (with geometry-dependent
proportionality constants called atomic surface tensions) to the solvent-accessible surface areas of the individual atoms
of the solute. The CDS contribution to the free energy of solvation is given by
atoms
X atoms
X
∆GCDS = σk Ak (R, RZk + rs ) + σ [M] Ak (R, RZk + rs ), (6.254)
k k
where σk and σ [M] are the atomic surface tension of atom k and the molecular surface tension, respectively, and Ak is
the solvent accessible surface area (SASA). The SASA depends on the geometry R, the set RZk of all atomic van der
Waals radii, and the solvent radius rs , which is added to each of the atomic van der Waals radii. In the program
Bondi’s radii are used for CDS contribution. More details could be found in the SMD paper.
We would appreciate if you cite the following papers in publications resulting from the use of SMD:
SMD can be employed in single point calculations and geometry optimizations, using in single-determine SCF (HF
and DFT) and CASSCF methods. In post SCF the result has been corrected in the reference wave function. User
should only specify the keyword ”smd” as ”true” and the solvent property. In most of cases solvents can be found
from the library so that one can add its name in the cosmo block. Rarely user can specify the 6 descriptors of solvents
for SMD calculation.
496 6 Detailed Documentation
--------------------
COSMO INITIALIZATION
--------------------
After SCF is done, the output file shows the SMD contribution to the total energy.
*****************************************************
* SUCCESS *
* SCF CONVERGED AFTER 14 CYCLES *
*****************************************************
6.20 SMD solvent model 497
----------------
TOTAL SCF ENERGY
----------------
For the calculation of first order (electric dipole and quadrupole moments) and second order (polarizabilities) electric
properties, the %elprop module was implemented. The second order properties can be calculated through the solution
of the CP-SCF equations. Details are shown below:
%elprop
Dipole true
Quadrupole true
Polar 1 # analytic calculation
2 # numeric differentiation of dipole
6.21 Calculation of Properties 499
# moments
3 # fully numeric second derivatives
Solver CG # CG(conjugate gradient)
# other options: DIIS or POPLE(default)
MaxDIIS 5 # max. dimension of DIIS method
Shift 0.2 # level shift used in DIIS solver
Tol 1e-8 # Convergence of the CP-SCF equations
# (norm of the residual)
MaxIter 64 # max. number of iterations in CPSCF
PrintLevel 2
EField 1e-4 # electric field step (a.u.) used in the
# numeric calculation of the polarizabilities
Origin 1 # Center of mass
2 # Center of nuclear charge
end
The most efficient and accurate way to calculate the polarizability analytically is to use the coupled-perturbed SCF
method. The most time consuming and least accurate way is the numerical second derivative of the total energy.
This is, for example, required for MP2 calculations because these do not yield a correlated density in the present
version 2.9 of ORCA. Note that the numerical differentiation requires: (a) tightly or even very tightly converged SCF
calculations and (b) carefully chosen field increments. If the field increment is too large then the truncation error
will be large and the values will be unreliable. On the other hand, if the field increment is too small the numerical
error associated with the finite difference differentiation will get unacceptably large up to the point where the whole
calculation becomes useless.
Starting from version 2.4.00 we have implemented several variants of spin-orbit-coupling operators, which are used in
the property calculations. These are based on effective potential and mean-field approaches. The options are selected
as follows:
(1) (2)
ĤSOC = ĤSOC + ĤSOC
(1) α2 X X (ri − RA × pi ) α2 X X −3
ĤSOC = ZA 3 ŝi ≡ ZA riA l̂iA ŝi (6.255)
2 i A |ri − RA | 2 i A
(2) α2 X X (ri − rj × pi )
ĤSOC = − (ŝi + 2ŝj ) (6.256)
2 i
j6=i
|ri − rj |3
α2 X X −3
≡− l̂ij rij (ŝi + 2ŝj ) (6.257)
2 i
j6=i
6.21 Calculation of Properties 501
This operator would be hard to handle exactly; therefore it is common to introduce mean field and/or effective
potential approaches in which the operator is written as an effective one-electron operator:
ĤSOC ∼
X (ef f )
= ĥi ŝi (6.258)
i
The simplest approximation is to simply use the the one-electron part and regard the nuclear charges as adjustable
parameters. Reducing their values from the exact nuclear charge is supposed to account in an average way for the
screening of the nuclear charge by the electrons. In our code we use the effective nuclear charges of Koseki et al. This
approximation introduces errors which are usually smaller than 10% but sometimes are larger and may approach 20%
in some cases. The approximation is best for first row main group elements and the first transition row (2p and 3d
elements). For heavier elements it becomes unreliable.
A much better approximation is to take the two-electron terms into account precisely. Without going into details here
– the situation is as in Hartree-Fock (or density functional) theory and one gets Coulomb, exchange and correlation
terms. The correlation terms (evaluated in a local DFT fashion) are negligible and can be safely neglected. They
are optionally included and are not expensive computationally. The Coulomb terms is (after the one-electron term)
the second largest contribution and is expensive to evaluate exactly. The situation is such that in the Coulomb-part
the spin-other orbit interaction (the second term in the two-electron part) does not contribute and one only has to
deal with the spin-own-orbit contribution. The exact evaluation is usually too expensive to evaluate. The RI and
seminumeric approximation are much more efficient and introduce only minimal errors (on the order of usually not
more than 1 ppm in g-tensor calculations for example) and are therefore recommended. The RI approximation is
computationally more efficient. The one-center approximation to the Coulomb term introduces much larger errors.
The fully numeric method is both slower and less accurate and is not recommended.
The exchange term has contributions from both the spin-own-orbit and spin-other-orbit interaction. These are taken
both into account in the mean-field approximation which is accessed by Flag 3 = 3. Here a one-center approximation
is much better than for the Coulomb term since both the integrals and the density matrix elements are short ranged.
Together with the Coulomb term this gives a very accurate SOC operator which is recommended. The DFT-Veff
operator suffers from not treating the spin-other-orbit part in the exchange which gives significant errors (also, local
DFT underestimates the exchange contributions from the spin-same-orbit interaction by some 10% relative to HF but
this is not a major source of error). However, it is interesting to observe that in the precise analytical evaluation, the
spin-other-orbit interaction is exactly -2 times the spin-own-orbit interation. Thus, in the DFT framework one gets a
much better SOC operator if the sign of the DFT exchange term is simply reversed! This is accessed by Flag 3 =
2.
Altogether the new SOC operators are a sigifcant step forward and are also more accurate than those used in other
programs which either neglect some contributions or make more approximations. For compatibility reasons the default
is still the old effective nuclear charge model und therefore the SOC operator actually wanted should be directly
specified.
Starting from release 2.4.30 the module orca eprnmr replaces the earlier separate modules for calculating g-tensors
and hyperfine couplings (orca dftg and orca hf). The use of the EPR/NMR module is rather simple. The individual
flags are given below.
502 6 Detailed Documentation
%eprnmr
# Calculate the g-tensor using CP-KS theory
GTensor 1
Ori CenterOfMass
CenterOfNucCharge
CenterOfElCharge #(default)
OwnNuc # for NMR chemical shifts take
# the own nucleus as gauge
# origin; this removes the
# origin dependence but the
# basis set convergence may
# still be very slow)
IGLO # (IGLO treatment; only rigorous if there
# is no HF exchange)
GIAO # (not yet implemented)
N # (number of the atom to put the origin)
6.21 Calculation of Properties 503
# For example:
# calculates the hyperfine coupling for all nitrogen atoms
Nuclei = all N { aiso, adip, fgrad, rho};
end
(a) The isotropic Fermi contact term that arises from the finite spin density on the nucleus under investigation. It is
calculated for nucleus N from:
4
aiso (N ) = π hSz i−1 ge gN βe βN ρ R~N (6.259)
3
504 6 Detailed Documentation
Here, hSz i is the expectation value of the z-component of the total spin, geandgN are the electron and nuclear
~ N is the spin density at the nucleus.
g-factors and βe and βN are the electron and nuclear magnetons respectively. ρ R
The proportionality factor PN = ge gN βe βN is commonly used and has the dimensions MHz bohr3 in ORCA.
(b) The spin dipole part that arises from the magnetic dipole interaction of the magnetic nucleus with the magnetic
moment of the electron. It is also calculated as an expectation value over the spin density as:
X
−5
Adip 2
µν (N ) = PN klρkl φk rN 3~rN µ~rN ν − δµν rN φl (6.260)
where ρ is the spin density matrix and ~rN is a vector of magnitude rN that points from the nucleus in question to the
electron ({φ} is the set of basis functions).
(c) The second order contribution that arises from spin-orbit coupling. Presently ORCA can calculate all these
contributions. The first two are calculated as simple expectation values of the appropriate operators over the
self-consistent spin density, but the second order contribution requires the solution of the coupled-perturbed SCF
equations and is consequently computationally more demanding. The contribution can be written:
1 X ∂ρkl D SOC E
Aorb
µν (N ) = − PN φk hν φl (6.261)
2S ∂Iµ
kl
The derivative of the spin density is computed from solving the coupled-perturbed SCF equations with respect to the
nucleus-orbit coupling as perturbation. The nucleus-orbit coupling is represented by the operator
X −3 (A)
hN
ν
OC
(A) = riA li,ν (6.262)
i
The field gradient tensor is closely related to the dipole contribution to the hyperfine coupling. The main differences
are that the electron instead of the spin density enters its calculation and that it contains a nuclear contribution due
to the surrounding nuclei. It is calculated from
P
−5 2
Vµν (N ) = − Pkl φk rN 3~rN µ~rN ν − δµν rN φl
kl (6.263)
+
P ~ −5 3R
ZA R ~ AN µ R~ AN ν − δµν RAN
2
AN
A6=N
with ZA as the nuclear charge of nucleus A and R ~ AN as a vector of magnitude RAN that points from nucleus A to
nucleus N . P is the first order density matrix.
NOTE:
• Hyperfine and quadrupole couplings are properties where the standard basis sets that have been designed for
geometry optimization and the like may not be entirely satisfactory (especially for atoms heavier than Ne).
You should probably look into tailoring the basis set according to your needs. While it is likely that a later
release will provide one or two special basis sets for ‘core-property’ calculations at this time you have to make
sure yourself that the basis set has enough flexibility in the core region, for example by uncontracting core
basis functions and adding s-primitives with large exponents (or using the “decontraction feature”, section 6.3).
If you add these tight functions and use DFT make sure that the numerical integration is still satisfactory. Use
the ‘SpecialGrid’ feature to enlarge grids for individual atoms without increasing the computational effort too
drastically.
6.21 Calculation of Properties 505
• For very heavy nuclei you may not get satisfactory results because scalar relativistic effects may become large.
These are available at the ZORA and DKH levels in ORCA if the flag PictureChange is set to true in the
%rel block. The situation is such that for DKH the implementation is only valid for the field gradient while
the ZORA methodology is consistent throughout. The IORA method is also available but the results will be
approximate. In my experience some nice results have been obtained with ZORA for HFCs and very nice results
for EFGs with DKH. In these quasi-relativistic calculations with DFT one has to be extremely cautious with
numerical integration accuracy and values of intacc of 9.0 and higher have been used for heavier (transition
metal) nuclei. Much lower values just produce noise!
Second order HFCs require the calculation of the spin-orbit coupling contributions which in turn requires the calculation
of the coupled perturbed SCF equations. These effects can be quite significant for heavier nuclei and should definitely
be included for transition metal complexes. The spin-orbit coupling treatment used is the same as described under
6.21.2.
The EPR g-tensor is a property that can be calculated as a second derivative of the energy and it is implemented as
such in ORCA for the SCF methods, e.g. HF and DFT. At the SCF level four contributions arise:
(SZ)
gµν = δµν ge (6.264)
α2 X α−β D E
(RM C)
gµν =− Pkl φk T̂ φl (6.265)
S
k,l
* +
1 X α−β
X
(DSO)
gµν = Pkl φk ξ (rA ) [rA rO − rA,µ rO,ν ] φl (6.266)
2S
A
k,l
(P SO)
X ∂P α−β D SOC E
kl
gµν = φk hν φk (6.267)
∂Bµ
k,l
Here, ge is the free-electron g-value (=2.002319...), S is the total spin, α the fine structure constant, P α−β is the spin
density matrix, {φ}is the basis set, T̂ is the kinetic energy operator, ξ (rA ) an approximate radial operator, hSOC
the spatial part of an effective one-electron spin-orbit operator and Bµ is a component of the magnetic field. The
derivative of the spin-density matrix is calculated from coupled-perturbed SCF theory with respect to a magnetic field
perturbation (orbital Zeeman term).
Accuracy. G-tensor calculations at the SCF level are not highly demanding in terms of basis set size. Basis sets that
give reliable SCF results (at least valence double zeta plus polarization) usually also give reliable g-tensor results.
For many molecules the Hartree-Fock approximation will give reasonable predictions. In a number of cases, however,
it breaks down completely. DFT is more robust in this respect and the number of molecules where it fails is much
smaller. Among the density functionals, the hybrid functionals seem to be the most accurate. In my hands PBE0 is
perhaps the best although PWP1 and B3LYP are not much worse. The GGA functionals such as BP, PW91, BLYP
or PBE are equally good for small radicals but are significantly inferior to their hybrid counterparts for transition
metal complexes.
Gauge dependence. Unfortunately, the g-tensor is a gauge dependent property, that is, the results depend on where
the origin is chosen within the molecule. Unless fully invariant procedures (such as IGLO or GIAO) are used, this
undesirable aspect is always present in the calculations. GIAO will be implemented in later releases but is not yet
506 6 Detailed Documentation
available in ORCA. However, if the choice of gauge origin is not outrageously poor, the gauge dependence is usually
so small that it can be ignored for all practical purposes, especially if large basis sets are used. ORCA gives you
considerable freedom in the choice of gauge origin. It can either be the center of mass, the center of nuclear charge,
the center of electronic charge (recommended), a special atom or a user-defined point in space. It is wise to check the
sensitivity of the results with respect to the choice of origin, especially when small g-shifts on the order of only a few
hundred ppm are calculated. The IGLO method should be a much better treatment of the origin dependence but
there is presently little experience with it. At least for NMR chemical shifts (in the absence of HF exchange) it is the
method of choice.
Spin-orbit coupling operator. In previous versions of the code, the g-tensor module used the parameterization
of Koseki et al. [318–320] for the spin-orbit operator. This is expected to be a reasonable approximation for the 2p
and 3d elements and less satisfactory for heavier main group or transition metal containing systems. Thus, the main
target molecules with the simple operators are radicals made of light atoms and first row transition metal complexes.
More accurate SOC operators (at only moderately increased computational cost) have now been implemented and are
described in section 6.21.2. With theses operators there are fewer restrictions. However, for very heavy elements they
will suffer from the shortcomings of the Breit-Pauli approximation and future releases will modify these operators to
take into account the ZORA or DKH corrections to the SOC.
6.21.3.3 Zero-Field-Splitting
It is well known that the ZFS consists of a first order term arising from the direct spin-spin interaction [321]:
* +
2
X X 2
(SS) 1 α r δ
ij KL − 3 (r )
ij K (r )
ij L
DKL = 0SS
5
{2ŝzi ŝzj − ŝxi ŝxj − ŝyi ŝyj } 0SS
(6.268)
2 S (2S − 1) i j6=i rij
(K,L =x,y,z). Here α is the fine structure constant (≈ 1/137 in atomic units), rij is the electronic distance vector with
magnitude rij and ŝi is the spin-vector operator for the i’th electron. |OSSi is the exact ground state eigenfunction of
the Born-Oppenheimer Hamiltonian with total spin S and projection quantum number MS = S. Since the spin-spin
interaction is of first order, it presents no particular difficulties. The more complicated contribution to the D-tensor
arises from the spin-orbit interaction, which gives a second order contribution. Under the assumption that the
spin-orbit coupling (SOC) operator can to a good approximation be represented by an effective one-electron operator
(ĤSOC = i ĥSOC
P
i ŝi ), ref [322] has derived the following sum-over-states (SOS) equations for the SOC contribution
to the ZFS tensor:
* +* +
1 X X X
∆−1
SOC−(0) SS K;SOC SS SS L;SOC
DKL =− 2 0 ĥi ŝi,0 b b ĥi ŝi,0 0SS (6.269)
b
S
b(Sb =S) i i
* +* +
1 X X X
∆−1
SOC−(−1) SS K;SOC S−1S−1 S−1S−1 L;SOC SS
DKL =− 0 ĥi ŝi,+1 b b ĥi ŝi,−1 0
b
S (2S − 1)
b(Sb =S−1) i i
(6.270)
SOC−(+1) 1
DKL = − (S+1)(2S+1) ·
−1 (6.271)
0SS ĥK;SOC S+1S+1 P L;SOC
P P S+1S+1 SS
∆b i ŝi,−1
b b ĥ i ŝi,+1
0
b(Sb =S+1) i i
6.21 Calculation of Properties 507
Here the one-electron spin-operator for electron i has been written in terms of spherical vector operator components
si,m with m = 0, ±1 and ∆b = Eb − E0 is the excitation energy to the excited state multiplet bSS (all MS components
One attractive possibility is to represent the SOC by the spin-orbit mean-field (SOMF) method developed by Hess
et al., [323] widely used in the AMFI program by Schimmelpfennig [324, 325] and discussed in detail by Berning et
al. [326] as well as in ref [327]. In terms of an (orthonormal) one-electron basis, the matrix elements of the SOMF
operator are:
1el−SOC
hK;SOC
rs = p ĥK q
P SOC 3 SOC 3
SOC (6.272)
+ Prs pq ĝK rs − 2 pr ĝK sq − 2
sq ĝK pr
rs
and:
α2 X X −3
ĥ1el−SOC
k (ri ) = ZA riA l̂iA;k (6.273)
2 i A
α2 −3
ĝkSOC (ri, rj ) = − l̂ij;k rij (6.274)
2
l̂iA = (r̂i − RA ) × p̂i is the angular momentum of the i’th electron relative to nucleus A. The vector r̂iA = r̂i − RA of
magnitude riA is the position of the i’th electron relative to atom A. Likewise, the vector r̂ij = r̂i −r̂j of magnitude rij
is the position of the i‘th electron relative to electron j and l̂ij = (r̂i −r̂j ) × p̂i is its angular momentum relative to this
electron. P is the charge density matrix of the electron ground state (Ppq = 0SS Eqp 0SS with Eqp = a+
+
pβ aqβ +apα aqα
+
where apσ and aqσ are the usual Fermion creation and annihilation operators).
The zero-field splitting (ZFS) is typically the leading term in the Spin-Hamiltonian (SH) for transition metal complexes
with a total ground state spin S>1/2 (for reviews and references see chapter 8). Its net effect is to introduce a splitting
of the 2S + 1 MS levels (which are exactly degenerate at the level of the Born-Oppenheimer Hamiltonian), even in the
absence of an external magnetic field. Thus, an analysis and interpretation of the ZFS is imperative if the information
content of the various physical methods that are sensitive to ZFS effects.
In 2007, we have developed a procedure that makes the ZFS calculation compatible with the language of analytic
derivatives (FN (2007) J. Chem. Phys., 127, 164112). Perhaps the most transparent route is to start from the exact
solutions of the
D Born-Oppenheimer
E Hamiltonian. To this end, we look at the second derivative of the ground state
energy (E = 0SS Ĥ 0SS ) with respect to a spin-dependent one-electron operator of the general form:
(m)
X
ĥK;(m) = xK hK (m)
pq Ŝpq (6.275)
pq
Where hK pq is the matrix of the K’th component of the spatial part of the operator (assumed to be imaginary Hermitian
(m)
as is the case for the spatial components of the SOC operator) and Ŝpq is the second quantized form of the spin
(m)
vector operator (m = 0, ±1). The quantity xK is a formal perturbation parameter. Using the exact eigenfunctions of
the BO operator, the first derivative is:
508 6 Detailed Documentation
∂E
X
(m)
= hK (m)
pq Ppq (6.276)
∂x K xK
(m)
=0 pq
D E
(m)
Ppq = 0SS |Ŝpq
(m) SS
|0 (6.277)
(m)
∂2E ∂Ppq
X
= hK (6.278)
(m) (−m)
pq (−m)
∂x ∂xK L xK
(m) (−m)
=xL =0 pq xL
(m)
∂Ppq D
SS(−m) (m) SS
E D
(m) SS(−m)
E
(−m)
= 0L |Ŝpq |0 + 0SS |Ŝpq |0L (6.279)
xL
Expanding the perturbed wavefunction in terms of the unperturbed states gives to first order:
E X D E
n 6= 0∆−1
SS(−m) L;(−m) SS
0L =− n |ni n ĥ 0 (6.280)
0 0E
Where |ni is any of the bS M . Thus, one gets:
(m)
∂2E X ∂Ppq
(m) (−m)
= hK
pq (−m)
(6.281)
∂xK ∂xL pq xL
X hD ED E D ED Ei
=− ∆−1
n 0SS |ĥL;(−m) |n n|ĥK;(m) |0SS + 0SS |ĥK;(m) |n n|ĥL;(−m) |0SS (6.282)
n6=0
The equality holds for exact states. For approximate electronic structure treatments, the analytic derivative approach
is more attractive since an infinite sum over states can never be performed in practice and the calculation of analytic
derivative is computationally less demanding than the calculation of excited many electron states.
Using eq 6.281, the components of the SOC-contribution to the D-tensor are reformulated as
(0)
SOC−(0) 1 X K;SOC ∂Ppq
DKL = h pq (6.283)
2S 2 pq ∂x
(0)
L
(+1)
SOC−(−1) 1 X K;SOC ∂Ppq
DKL = hpq (6.284)
S (2S − 1) pq ∂x
(−1)
L
(−1)
SOC−(+1) 1 X K;SOC ∂Ppq
DKL = hpq (+1)
(6.285)
(S + 1) (2S + 1) pq ∂x L
6.21 Calculation of Properties 509
These are general equations that can be applied together with any non-relativistic or scalar relativistic electronic
structure method that can be cast in second quantized form. Below, the formalism is applied to the case of a
self-consistent field (HF, DFT) reference state.
For DFT or HF ground states, the equations are further developed as follows:
Z Z
1 ρ (r1 ) ρ (r2 ) 1 X σ σ
ESCF = VN N + Ph+ +
Here VN N is the nuclear repulsion energy and hµν is a matrix element of the one-electron operator which contains the
kinetic energy and electron-nuclear attraction terms (habi denotes the trace of the matrix product ab). As usual, the
molecular spin-orbitals ψpσ are expanded in atom centered basis functions (σ = α, β):
X
ψpσ (r) = cσµp φµ (r) (6.287)
µ
Z Z
−1
(µν|κτ ) = φµ (r1 ) φν (r1 ) r12 φκ (r2 ) φτ (r2 ) dr1 dr2 (6.288)
The mixing parameter ax controls the fraction of Hartree-Fock exchange and is of a semi-empirical nature. EXC [ρα , ρβ ]
represent the exchange-correlation energy. The parameter cDF is an overall scaling factor that allows one to proceed
from Hartree-Fock theory (ax = 1,cDF = 0) to pure DFT (ax = 0, cDF = 1) to hybrid DFT (0 < ax < 1, cDF = 1).
The orbitals satisfy the spin-unrestricted SCF equations:
σ
X σ α
Fµν = hµν + Pκτ (µν|κτ ) − ax Pκτ (µκ|ντ ) + cDF (µ|VXC |ν) (6.289)
κτ
σ δEXC α β
With VXC = δρ σ (r)
and Pµν = Pµν + Pµν being the total electron density. For the SOC perturbation it is customary
to regard the basis set as perturbation independent. In a spin-unrestricted treatment, the first derivative is:
∂ESCF X X
(m)
= iα |hK sm |iα + iβ |hK sm |iβ = 0 (6.290)
∂xK iα iβ
For the second derivative, the perturbed orbitals are required. However, in the presence of a spin-dependent
perturbation they can no longer be taken as pure spin-up or spin-down orbitals. With respect to the L’th component
of the perturbation for spin-component m, the orbitals are expanded as:
α;(m)L
X (m);L
X (m);L
ψi (r) = Uaα iα ψaα (r) + Uaβ iα ψaβ (r) (6.291)
aα aβ
β;(m)L
X (m);L
X (m);L
ψi (r) = Uaα iβ ψaα (r) + Uaβ iβ ψaβ (r) (6.292)
aα aβ
Since the matrix elements of the spin-vector operator components are purely real and the spatial part of the SOC
operator has purely complex matrix elements, it follows that the first order coefficients are purely complex. The
second derivative of the total SCF energy becomes:
510 6 Detailed Documentation
Examination of the three cases m = 0, ±1 leads to the following equations for the D-tensor components:
(0)
(0) 1 X ∂Pµν K;SOC
DKL = − µ|h |ν (6.294)
4S 2 µν ∂x(0)
L
(−1)
(+1) 1 X K;SOC ∂Pµν
DKL = µ|h |ν (+1)
(6.295)
2 (S + 1) (2S + 1) µν ∂xL
(+1)
(−1) 1 X K;SOC ∂Pµν
DKL = µ|h |ν (6.296)
2S (2S − 1) µν ∂x
(−1)
L
Where a special form of the perturbed densities has been chosen. They are given in the atomic orbital basis as:
(0)
∂Pµν X (0);L
X (0);L
(0)
= Uaα iα cα α
µi cνa + Uaβ iβ cβµi cβνa (6.297)
∂xL iα aα iβ aβ
(+1)
∂Pµν X (−1);L
X (−1);L
(−1)
= Uaβ iα cα β
µi cνa − Uaα iβ cα β
µa cνi (6.298)
∂xL iα aβ iβ a α
(−1)
∂Pµν X (+1);L
X (+1);L
(+1)
=− Uaβ iα cβµa cα
νi + Uaα iβ cβµi cα
νa (6.299)
∂xL iα aβ iβ aα
The special form of the coupled perturbed equations are implemented in ORCA run as follows: The perturbation is of
the general form hK ŝm . The equations 6.294-6.299 and 6.300-6.305 below have been written in such a way that the
spin-integration has been performed but that the spin-dependent factors have been dropped from the right-hand sides
and included in the prefactors of eqs 6.294-6.296. The explicit forms of the linear equations to be solved are:
m = 0:
X
(0) K(0) K(m)
ε(0)
aα − εiα Uaα iα + ax Ubα jα {(bα iα |aα jα ) − (jα iα |aα bα )} = − aα |hK |iα (6.300)
jα bα
X K(m)
(0) K(0)
ε(0)
aβ − εiβ Uaβ iβ + ax Ubβ jβ {(bβ iβ |aβ jβ ) − (jβ iβ |aβ bβ )} = − aβ |hK |iβ (6.301)
jβ bβ
m = +1:
X X
(0) K(+1) K(+1) K(+1)
ε(0)
aα − εiβ Uaα iβ + ax Ubβ jα (bβ iβ |aα jα ) − ax Ubβ jα (jβ iβ |aα bα ) = − aα |hK |iβ (6.302)
jα bα bα jβ
6.21 Calculation of Properties 511
X X
(0) K(+1) K(+1) K(+1)
ε(0)
aβ − εiα Uaβ iα + ax Ubα jβ (bα iα |ab jβ ) − ax Ubβ jα (jα iα |aβ bβ ) = 0 (6.303)
jβ bα bβ jα
m = −1:
X X
(0) K(−1) K(−1) K(−1)
ε(0)
aβ − εiα Uaβ iα + ax Ubα jβ (bα iα |ab jβ ) − ax Ubβ jα (jα iα |aβ bβ ) = − aβ |hK |iα (6.304)
jβ bα bβ jα
X X
(0) K(−1) K(−1) K(−1)
ε(0)
aα − εiβ Uaα iβ + ax Ubβ jα (bβ iβ |aα jα ) − ax Ubβ jα (jβ iβ |aα bα ) = 0 (6.305)
jα bα bα jβ
Note that these coupled-perturbed (CP) equations contain no contribution from the Coulomb potential or any other
local potential such as the exchange-correlation potential in DFT. Hence, in the absence of HF exchange, the equations
are trivially solved:
aα |hK |iα
K(0)
Uaα iα = − (0) (0)
(6.306)
εaα − εiα
aβ |hK |iβ
K(0)
Uaβ iβ =− (0) (0)
(6.307)
εaβ − εiβ
aα |hK |iβ
K(+1)
Uaα iβ =− (0) (0)
(6.308)
εaα − εiβ
K(+1)
Uaβ iα =0 (6.309)
aβ |hK |iα
K(−1)
Uaβ iα =− (0) (0)
(6.310)
εaβ − εiα
K(−1)
Uaα iβ =0 (6.311)
K(+1) K(−1)
It is interesting that the “reverse spin flip coefficients” Uaβ iα and Uaα iβ are only nonzero in the presence of HF
exchange. In a perturbation expansion of the CP equations they arise at second order (V2 /∆ε2 ) while the other
coefficients are of first order (V/∆ε; V represents the matrix elements of the perturbation). Hence, these contributions
are of the order of α4 and one could conceive dropping them from the treatment in order to stay consistently at the
level of α2 . These terms were nevertheless kept in the present treatment.
Equations 6.300-6.305 are referred to as CP-SOC (coupled-perturbed spin-orbit coupling) equations. They can
be solved by standard techniques and represent the desired analogue of the CP-SCF magnetic response equations
solved for the determination of the g-tensor and discussed in detail earlier [328]. It is readily confirmed that in the
absence of HF exchange, eqs 6.306-6.311 inserted into eqs 6.294-6.299 lead back to a modified Pederson-Khanna type
treatment of the SOC contributions to the D-tensor [329]. In the framework of the formalism developed above, the
Pederson-Khanna formula can be re-written in the form:
512 6 Detailed Documentation
This equation was derived from second-order non-self-consistent perturbation theory without recourse to spin-coupling.
For the special case of no Hartree-Fock exchange, the main difference to the treatment presented here is that the
correct prefactors from eqs 6.283-6.285 occur in front of the spin-flip contributions rather than ± 1/(4S 2 ) in eq
6.312. In the presence of HF exchange it is suggested that the consistent generalization of the PK method are eqs
6.294-6.296 with the ± 1/(4S 2 ) prefactors and this way the method has been implemented as an option into the
ORCA program.
For completeness, the evaluation of the spin-spin term in the SCF case proceeds conveniently through:
−5 2
DKL = Pµν Pκτ − Pµκ Pντ µν r12 3r12,K r12,L − δKL r12 κτ (6.313)
4 S (2S − 1) µν κτ
as derived by McWeeny and Mizuno and discussed in some detail by Sinecker and FN (2006). In this reference it
was found that DFT methods tend to overestimate the spin-spin contribution if the calculations are based on a
spin-unrestricted SCF treatment. A much better correlation with experiment was found for open-shell spin restricted
calculations. The origin of this effect proved to be difficult to understand but it was shown in ref [330] that in the
case of small spin-contamination, the results of ROKS calculations and of those that are obtained on the basis of the
spin-unrestricted natural orbital (UNO) determinant are virtually indistinguishable. It is therefore optionally possible
in the ORCA program to calculate the spin-spin term on the basis of the UNO determinant.
At present ORCA knows three different ways of analyzing the computed SCF wavefunction that will be described
below. All of these methods can produce a tremendous amount of output. However, this output can be precisely
controlled by the user to his or her individual needs.
In general there is one compound key called PrintLevel which is there to choose reasonable amounts of output. All
that PrintLevel does is to set certain flags in the array Print which holds the details about what to print and what
not.
The array Print allows the control of output. The general way of assigning elements of Print is:
%output
PrintLevel Normal
Print[ Flag ] 0 # turn print off
1 # turn print on
n # some flags are more sophisticated
end
6.22 Population Analyses and Control of Output 513
The compound key PrintLevel can be used to select certain default settings for the print array. Specifying Print
after PrintLevel can be used to modify these defaults.
%output
PrintLevel Nothing
Mini
Small
Normal
Maxi
Large
Huge
Debug
end
Print has presently the following elements that can be user controlled:
Flag Action
P InputFile Echo the input file
P Cartesian Print the cartesian coordinates
P Internal Print the internal coordinates
P Basis = 1 : Print the basis set information
= 2 : Also print the primitives in input format
P OneElec Print of the one electron matrix
P Overlap Print the overlap matrix
P KinEn Print the kinetic energy matrix
P S12 Print the S−1/2 matrix
P GuessOrb Print the initial guess orbitals
P OrbEn Print Orbital Energies
P Mos Print the MO coefficients on convergence
P Density Print the converged electron density
P SpinDensity Print the converged spin density
P EHDetails Print initial guess extended Hückel details
P SCFInfo Print the SCF input flags
P SCFIterInfo = 1 : print short iteration information
= 2 : print longer iteration information
= 3 : in a direct SCF also print integral progress
P Fockian Print Fockian matrix
P DIISMat Print DIIS matrix
P DIISError Print DIIS error
P Iter P Print Density
P Iter C Print MO coefficients
P Iter F Print Fock matrix
P Mayer Print Mayer population analysis. Default = on.
P NatPop Print Natural population analysis. Default = off.
P Hirshfeld Print Hirshfeld population analysis. Default = off.
P Mulliken Print Mulliken population analysis. Default = on
P AtCharges M Print Mulliken atomic charges
P OrbCharges M Print Mulliken orbital charges
514 6 Detailed Documentation
The Mulliken population analysis [331] is, despite all its known considerable weaknesses, the standard in most quantum
chemical programs. It partitions the total density using the assignment of basis functions to given atoms in the
molecules and the basis function overlap. If the total charge density is written as ρ (~r) and the total number of
electrons is N we have:
Z
ρ (~r) d~r = N (6.314)
and from the density matrix P and the basis functions {φ}:
X
ρ (~r) = Pµν φµ (~r) φν (~r) (6.315)
µν
therefore:
Z X Z
ρ (~r) d~r = Pµν φµ (~r) φν (~r) d~r (6.316)
µν | {z }
Sµν
X
= Pµν Sµν (6.317)
µν
After assigning each basis function to a given center this can be rewritten:
XXXA XB AB AB
= Pµν Sµν (6.318)
A B µ ν
XXA XA AA AA
X X XA XB AB AB
= Pµν Sµν + 2 Pµν Sµν (6.319)
A µ ν A B<A µ ν
Mulliken proposed to divide the second term equally between each pair of atoms involved and define the number of
electrons on center A, NA , as:
XA XA AA AA
X XA XB AB AB
NA = Pµν Sµν + Pµν Sµν (6.320)
µ ν B6=A µ ν
6.22 Population Analyses and Control of Output 517
P
such that NA = N . The charge of an atom in the molecule is then:
A
QA = ZA − NA (6.321)
where ZA is the core charge of atom A. The cross terms between pairs of basis functions centered on different atoms
is the overlap charge and is used in ORCA to define the Mulliken bond order:
XA XB AB AB
BAB = 2 Pµν Sµν (6.322)
µ ν
%output
Print[ P_Mulliken ] 1 # default = on
end
A number of additional options can be specified to control the details of the Mulliken population analysis. By default
the Mulliken population analysis is turned on.
%output
Print[ P_AtCharges_M ] 1 # Print atomic charges
Print[ P_OrbCharges_M ] 1 # Print orbital charges
Print[ P_FragCharges_M] 1 # Print fragment charges
Print[ P_BondOrder_M ] 1 # Print bond orders
Print[ P_FragBondOrder_M ] 1# Print fragment b.o.
Print[ P_ReducedOrbPop_M ] 1# Print reduced orb. Charges
Print[ P_AtPopMO_M ] 1 # Print atomic charges in
# each MO
Print[ P_OrbPopMO_M ] 1 # Print orbital populaiton
# for each MO
Print[ P_ReducedOrbPopMO_M] 1 # Print reduced orbital
# pop for each MO
Print[ P_FragPopMO_M ] 1 # Print the fragment
# population for for each MO
end
These options allow to get very detailed information about the computed wavefunctions and is much more convenient
than to look at the MOs directly. A ‘reduced orbital population’ is a population per angular momentum type.
For example the sum of populations of each pz orbital at a given atom is the reduced orbital population of the pz
function.
518 6 Detailed Documentation
The Löwdin analysis [96] is somewhat more straightforward than the Mulliken analysis. In the Löwdin method one
changes to a basis where all overlap integrals vanish. This is accomplished via Löwdins symmetric orthogonalization
matrix S−1/2 . Using this transformation matrix the new basis functions are multicentered but are in a least square
sense as similar as possible to the original, strictly localized, atomic basis functions. The similarity of the transformed
functions and original functions is explored in the population analysis. The density matrix transforms as:
XA L
NA = Pµµ (6.324)
µ
The bond order is defined from the Wiberg index [332] that was first used in the context of semiempirical methods
(that are formulated in the Löwdin basis right from the start):
X A X B L 2
BAB = Pµν (6.325)
µ ν
The output for the Löwdin population analysis (that I personally prefer over the Mulliken analysis) is closely similar.
By default the Löwdin population analysis is turned on and provides some more detail than the Mulliken analysis.
%output
Print[ P_Loewdin ] 1 # default = on
end
%output
Print[ P_AtCharges_L ] 1 # Print atomic charges
Print[ P_OrbCharges_L ] 1 # Print orbital charges
Print[ P_FragCharges_L] 1 # Print fragment charges
Print[ P_BondOrder_L ] 1 # Print bond orders
Print[ P_FragBondOrder_L ] 1# Print fragment b.o.
Print[ P_ReducedOrbPop_L ] 1# Print reduced orb. Charges
Print[ P_AtPopMO_L ] 1 # Print atomic charges in
# each MO
Print[ P_OrbPopMO_L ] 1 # Print orbital population
# for each MO
Print[ P_ReducedOrbPopMO_L] 1 # Print reduced orbital
# pop for each MO
Print[ P_FragPopMO_L ] 1 # Print the fragment
# population for each MO
end
6.22 Population Analyses and Control of Output 519
Mayers bonding analysis [333–336] is another creative attempt to define chemically useful indices. The Mayer atomic
charge is identical to the Mulliken charge. The Mayer bond order is defined as:
XA XB
BAB = (PS)µν (PS)νµ + (RS)µν (RS)νµ (6.326)
µ ν
Here P is the total electron density matrix and R is the spin density matrix. These Mayer bond orders are very useful.
Mayer’s total valence for atom A is defined as:
XA XA
VA = 2NA − (PS)µν (PS)νµ (6.327)
µ ν
In normal bonding situations and with normal basis sets VA should be reasonably close to the valence of atom A in a
chemical sense (i.e. close to four for a carbon atom). The bonded valence is given by:
X
XA = VA − BAB (6.328)
B6=A
and finally the free valence (a measure of the ability to form further bonds) is given by:
FA = VA − XA (6.329)
%output
Print[ P_Mayer ] 1 # default = on
end
The output is rather simple and short and can not be further controlled. By default the Mayer population analysis is
turned on.
A popular and useful method for population analysis is the natural population analysis due to Weinhold and co-workers.
It is implemented in the gennbo program which is distributed in older versions via the CCL list and in newer versions
via the university of Wisconsin/Madison. Information about the NBO program can be found at http://www.chem.wisc.
edu/˜nbo5. In order to use it together with ORCA you need a version of the stand-alone executable in some directory
that is known via the standard path. Starting with version 3.0.1 ORCA can be used with either NBO5 or NBO6. To
interface NBO5: set environment variables NBOVERSION=5 and NBOEXE=/full/name/of/nbo5-executable. For use
of NBO6: set environment variables GENEXE=/full/name/of/gennbo-executable and NBOEXE=/full/name/of/nbo6-
executable.
ORCA features only two keywords to interface the gennbo program: NPA and NBO. NPA simply requests a NPA analysis
without potentially large output from the NBO analysis whereas NBO invokes the NPA as well as the NBO analysis.
The following example illustrates the use:
520 6 Detailed Documentation
#
# Test the interface to the GENNBO program
#
! RHF SVP NBO
* xyz 0 1
C 0.000000 0.000000 0.000000
O 1.200000 0.000000 0.000000
H -0.550000 0.952628 0.000000
H -0.550000 -0.952628 -0.000000
*
Natural Population
Natural ---------------------------------------------
Atom No Charge Core Valence Rydberg Total
--------------------------------------------------------------------
C 1 0.37439 1.99966 3.58863 0.03732 5.62561
O 2 -0.59002 1.99976 6.57303 0.01723 8.59002
H 3 0.10782 0.00000 0.88722 0.00496 0.89218
H 4 0.10782 0.00000 0.88722 0.00496 0.89218
====================================================================
* Total * 0.00000 3.99942 11.93611 0.06447 16.00000
Natural Population
--------------------------------------------------------
Core 3.99942 ( 99.9854% of 4)
Valence 11.93611 ( 99.4676% of 12)
Natural Minimal Basis 15.93553 ( 99.5970% of 16)
Natural Rydberg Basis 0.06447 ( 0.4030% of 16)
--------------------------------------------------------
--------------------------------------------------------
Core 3.99942 ( 99.985% of 4)
Valence Lewis 11.89664 ( 99.139% of 12)
================== ============================
Total Lewis 15.89605 ( 99.350% of 16)
-----------------------------------------------------
Valence non-Lewis 0.07823 ( 0.489% of 16)
Rydberg non-Lewis 0.02571 ( 0.161% of 16)
================== ============================
Total non-Lewis 0.10395 ( 0.650% of 16)
--------------------------------------------------------
NHO DIRECTIONALITY AND BOND BENDING (deviations from line of nuclear centers)
5 1.99557 : BOND 0C 3H
6 1.98820 : LONE-PAIR 1O
7 1.91756 : LONE-PAIR 1O
8 0.00000 : ANTIBOND 0C 1O
9 0.00003 : ANTIBOND 0C 1O
10 0.03910 : ANTIBOND 0C 2H
11 0.03910 : ANTIBOND 0C 3H
12 0.01025 : RYDBERG 0C
13 0.00517 : RYDBERG 0C
14 0.00001 : RYDBERG 0C
15 0.00000 : RYDBERG 0C
16 0.00000 : RYDBERG 0C
17 0.00000 : RYDBERG 0C
18 0.00000 : RYDBERG 0C
19 0.00001 : RYDBERG 0C
20 0.00000 : RYDBERG 0C
21 0.00368 : RYDBERG 1O
22 0.00019 : RYDBERG 1O
23 0.00000 : RYDBERG 1O
24 0.00000 : RYDBERG 1O
25 0.00000 : RYDBERG 1O
26 0.00000 : RYDBERG 1O
27 0.00000 : RYDBERG 1O
28 0.00001 : RYDBERG 1O
29 0.00000 : RYDBERG 1O
30 0.00314 : RYDBERG 2H
31 0.00003 : RYDBERG 2H
32 0.00002 : RYDBERG 2H
33 0.00001 : RYDBERG 2H
34 0.00314 : RYDBERG 3H
35 0.00003 : RYDBERG 3H
36 0.00002 : RYDBERG 3H
37 0.00001 : RYDBERG 3H
Thus, in this example the NBO analysis shows that a single Lewis structure is dominant with single bonds between C
and H, a double bond between C and O and two lone pairs at the oxiygen – just as ordinary chemical arguments would
imply. In addition, the program produces the four corresponding valence antibonds (as expected). The remaining
components of the basis set span the “Rydberg” space and lead to semilocalized, orthogonal orbitals that are assigned
to single atoms (Note the nomenclature: BD = bond, BD* = antibond, LP = lone pair, CR = core orbital, RY=
Rydberg orbital). The NPA analysis shows a patially negative oxygen and partially positive carbon and hydrogen
atoms – all matching the expectations.
NOTE:
• ORCA reorders the NBOs compared to the gennbo program. The ORCA ordering is: core orbitals – bond
orbitals – lone pairs – antibonds – Rydberg orbitals.
• ORCA suppresses a lot of NBO related output. In order to get the full gennbo output you have to run the
program in the standalone mode using the file that ORCA leaves on disk for you.
• ORCA leaves a jobname.nbo file on disk – This file is a standard GBW file and can be used to visualize the
NBOs. Note that in this case the ORCA ordering of NBO’s is used.
The gennbo program has many additional features and analysis tools. Since these are subject to changes or
improvements over time I have decided to provide only a superficial interface to the basic features and leave a file on
524 6 Detailed Documentation
disk that can be used to access the more fancy features of the gennbo program manually. This file will be called
jobname.47. This is an ascii file that can be edited with a text editor. Add or remove the keywords in the $NBO block
as needed and call the gennbo program like
Figure 6.29: Six NBOs of the H2 CO molecule. Shown are the occupied bonding π and σ orbitals
(left) for C and O, the two oxygen lone-pairs (middle) and the two π and σ antibonding
orbitals (right).
This will produce the desired output in the file jobname.nboout. The jobname.47 file looks like:
nbas 38
bodm
upper
bohr
$END
$COORD
*** NBO job generated by orca_scf
6 6 0.000000 0.000000 0.000000
8 8 2.267715 0.000000 0.000000
1 1 -1.039369 1.800241 0.000000
1 1 -1.039369 -1.800241 0.000000
$END
$BASIS
etc. etc. (refer to the NBO manual for a
detailed description)
If you have no need for this (rather large) file, then you have to delete it manually!
Investigating open-shell molecules, it is common practice to consult the spin-population analysis i.e. the Mulliken
spin-population using the spin-density matrix. The trace of spin-density corresponds to difference in the number
of alpha and beta electrons. For an open-shell system in high-spin configuration, the trace matches the number of
unpaired electrons. However, the spin-density is not able to discriminate anti-ferromagnetic coupled electrons from
electron pairs. Thus, open shell singlets appear to have no unpaired electrons. There are many approaches in the
literature to define a density matrix for unpaired electrons that correctly describe low-spin configurations. For a
CASSCF-type wavefunction, two common effective unpaired electron densities (eff. UED) are available in ORCA.
Namely, Taksuka’s [337] and Head-Gordon’s [338] formulations. If the one-particle density matrix is denoted with γ,
its eigenvalues n and vectors U satisfy
γ = UnU† . (6.330)
The eff. unpaired electron density matrix UED can be expressed as a function of the natural orbital occupation
As an example, let us recompute the example in [338] - two oxygen atoms at of 10Å distance in the triplet state. The
active space contains all the 2p orbitals and electrons. Since the ground-state is 9-fold degenerate, we must take into
account all 9 roots.
!svp
%maxcore 2000
%casscf nel 8
norb 6
mult 3
nroots 9
actorbs locorbs # localized active orbitals
end
%output
print[p_unpaired_t] 1 # Takatsuka UED
print[p_unpaired_hg] 1 # Head-Gordon UED
end
*xyz 0 3
O 0 0 0
O 0 0 10.0
*
According to the CASSCF wavefunction, there should be 4 unpaired electrons coupled to a triplet state.
---------------------------------------------
CAS-SCF STATES FOR BLOCK 1 MULT= 3 NROOTS= 9
---------------------------------------------
ROOT 0: E= -149.4274934720 Eh
0.49867 [ 31]: 121211
0.48600 [ 50]: 211112
0.01400 [ 51]: 211121
ROOT 1: E= -149.4274934720 Eh 0.000 eV
0.49867 [ 22]: 112211
0.48599 [ 51]: 211121
0.01400 [ 50]: 211112
...
As expected, the spin-density is not sensitive for the two-antiferromagnetically coupled electrons
-------------------
SPIN-DENSITY MATRIX
-------------------
6.22 Population Analyses and Control of Output 527
0 1 2 3 4 5
0 0.333333 0.000000 -0.000000 -0.000000 -0.000000 0.000000
1 0.000000 0.333333 -0.000000 0.000000 0.000000 0.000000
2 -0.000000 -0.000000 0.333333 -0.000000 0.000000 0.000000
3 -0.000000 0.000000 -0.000000 0.333333 -0.000000 0.000000
4 -0.000000 0.000000 0.000000 -0.000000 0.333333 0.000000
5 0.000000 0.000000 0.000000 0.000000 0.000000 0.333333
Trace of the spin density: 2.000000
The eff. unpaired density matrix by Head-Gordon on the other hand is able to reproduce the correct picture here.
------------------------------------------------------------------------------
Head-Gordon eff. unpaired electron density
------------------------------------------------------------------------------
0 1 2 3 4 5
0 0.666667 0.000000 -0.000000 -0.000000 0.000000 -0.000000
1 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000
2 -0.000000 0.000000 0.666667 -0.000000 0.000000 0.000000
3 -0.000000 0.000000 -0.000000 0.666667 -0.000000 0.000000
4 0.000000 0.000000 0.000000 -0.000000 0.666667 -0.000000
5 -0.000000 0.000000 0.000000 0.000000 -0.000000 0.666667
********************************
* MULLIKEN POPULATION ANALYSIS *
* (EFF. UED) *
********************************
------------------------------------------
MULLIKEN ATOMIC EFF. UED
------------------------------------------
0 O : 2.000000
1 O : 2.000000
Sum of atomic contributions: 4.0000000
---------------------------------------------------
MULLIKEN REDUCED ORBITAL EFF. UED
---------------------------------------------------
SPIN
0 O s : 0.000000 s : 0.000000
pz : 0.666667 p : 2.000000
px : 0.666667
py : 0.666667
528 6 Detailed Documentation
The full printing will contain both eff. unpaired electron densities their Mulliken and Loewdin analysis. Extensions
for single-reference UHF/UKS wavefunction exist and might find their way into ORCA in the future.
There exists a vast literature on the computation of local spin-square value for atomic centers. [339] Starting from
localized orbitals, these values can be used to estimate exchanges coupling of magnetic centers. [340] There are
ambiguities in the formulation that basically arise from:
Local spin analysis is available for CASSCF and DMRG wavefunctions. Both methods are properly spin-adapted and
the two-body density matrix is readily available. So, the remaining source of ambiguity is the handling of poorly
localized orbitals. In our implementation, orbitals are split in a Mulliken type fashion. The working equations are
presented in the work of D.R. Alcoba et. al. [341]. The total spin-square expectation value is expressed in terms of
the one- and two-body density matrices γ and Γ
Act Act
2 3 X p X pq
S = γp − 2Γpq − Γpp
qq . (6.334)
4 p pq
The contribution to the total spin can then be divided into a sum of atomic contributions and a spin-correlation
matrix (di-atomic)
X
2 1 X
2
S2 =
SA + SAB , (6.335)
A
2
A6=B
where A and B are atomic centers. Multiplying equation 6.334 with Mulliken derived atom-weights for the molecular
orbitals, the local spin and spin-correlation matrices in 6.335 are readily indentified.
6.22 Population Analyses and Control of Output 529
The atomic centers of interest are set in the output-block of ORCA, where the numbering corresponds to the atom
number in the coordinate block i.e.
!svp noautostart
%casscf nel 2
norb 2
mult 1
actorbs locorbs # localizes the active orbitals
end
%output
localspin 0,1
end
*xyz 0 1
H 0 0 0
H 0 0 10.0
*
In this example we want to compute the two singlet-coupled hydrogen atoms. The keyword actorbs locorbs ensures
localized orbitals at the end of the CASSCF procedure. At the beginning of the population analysis, we find the
desired local spin-square values.
--------------------
Local Spin Analysis
--------------------
Input particle densities ... h2.casp.tmp
Active orbitals ... 0 - 1
Weighting matrix
0 1
0 1.000000 0.000000
1 0.000000 1.000000
Since the atoms are well separated, we have perfectly localized orbitals. Consequently, the weighting matrix reduces to
values of one and zero. We obtain local spin-square values of 34 corresponding two the exact values for single electrons.
530 6 Detailed Documentation
For less localized orbitals the quality of the anlysis is less rigorous.
The analysis of UNO’s can be controlled similarly. The flags together with their default values are shown below:
%output
Print[ P_UNO_OccNum ] = 1; # Occupation numbers
Print[ P_UNO_AtPopMO_M ] = 0; # Mulliken atom pop.
# per UNO
Print[ P_UNO_OrbPopMO_M] = 0; # Mulliken orbital pop.
# per UNO
Print[ P_UNO_ReducedOrbPopMO_M] = 0;
# Mulliken reduced orbital
# pop. per UNO
Print[ P_UNO_AtPopMO_L ] = 0; # Loewdin atom pop.
# per UNO
Print[ P_UNO_OrbPopMO_L] = 0; # Loewdin orbital pop.
# per UNO
Print[ P_UNO_ReducedOrbPopMO_L] = 0;
# Loewdin reduced orbital
# pop. per UNO
end
There are two types of graphics output possible in ORCA - two dimensional contour plots and three dimensional
surface plots. The quantities that can be plotted are the molecular orbitals, the total electron density or the total spin
density. The graphics is controlled through the block %plots.
%plots
#*** the vectors defining the cut plane
v1 0, 0, 0 # pointer to the origin
v2 1, 0, 0 # first direction
v3 0, 1, 0 # second direction
#*** alternative to defining vectors. Use atom coordinates
at1 0 # first atom defining v1
at2 2 # second atom defining v2
6.23 Orbital and Density Plots 531
v1 = 0, 0, 0;
v2 = 1, 0, 0;
v3 = 0, 1, 0;
min1= -8; max1= 8;
min2= -8; max2= 8;
dim1= 50; dim2=50;
Format = HPGL;
NCont = 200;
Icont = 1;
Skeleton= true;
Atoms = true;
Figure 6.30: Contour plot of the lowest unoc-
MO("Test-DFT-H2CO+-MO7xy.plt",7,1);
cupied spin down orbital of the
H2 CO+ cation radical in the x,y
plane.
NOTE:
• The ELDENS (plot of the total electron density) and SPINDENS (plot of the total spin density) commands work
analogous to the MO with the obvious difference that there is no MO or operator to be defined.
• The UNO option plots natural orbitals of the UHF wavefunction (if they are available). No operator can be
given for this command because there is only one set of UHF-NOs.
• If the program cannot find the plot module (‘Bad command or filename’) try to use ProgPlot=’’orca plot.exe’’
in the [METHOD] block or point to the explicit path.
• The defining vectors v2 and v3 are required to be orthonormal. The program will use a Schmidt orthonor-
malization of v3 with respect to v2 to ensure orthonormality. If you don’t like this make sure that the input
vectors are already orthogonal.
• at1, at2 and at3 can be used instead of v1, v2 and v3. In this case say v1 is taken as the coordinates of
atom at1. Mixed definitions where say v2 is explicitly given and say v3 is defined through at3 are possible. A
value of -1 for at1, at2 and at3 signals that at1, at2 and at3 are not to be used. This type of definition may
sometimes be more convenient.
• Variables can be assigned several times. The ‘actual’ value a variable has is stored together with the command
to generate a plot (MO, ELDENS or SPINDENS). Thus after each plot command the format or orientation of the
plot can be changed for the next one.
6.23 Orbital and Density Plots 533
• The Origin format produces a straightforward ASCII file with x,y and z values that can be read into your
favorite contour plot program or you could write a small program that reads such files and converts them to
whatever format is more appropriate for you.
• I usually use Word for Windows to open the HPGL files which appears to work fine. Double clicking on the
graphics will allow modification of linewidth etc. For some reason that is not clear to me some graphics
programs do not like the HPGL code that is produced by ORCA. If you are an HPGL expert and you have a
suggestion - let me know.
Surface plots can, for example, be created through an interface to Leif Laaksonen’s gOpenMol program. This program
can be obtained free of charge over the internet (http://laaksonen.csc.fi/gopenmol). It runs on a wide variety of
platforms, is easy to use, produces high quality graphics and is easy to interface18 - thank you Leif for making this
program available!
%output
XYZFile true
end
%plots
dim1 45 # resolution in x-direction
dim2 45 # resolution in y-direction
dim3 45 # resolution in z-direction
min1 -7.0 # x-min value in bohr
max1 7.0 # x-min value in bohr
min2 -7.0 # y-min value in bohr
max2 7.0 # y-max value in bohr
min3 -7.0 # z-min value in bohr
max3 7.0 # z-max value in bohr
Format gOpenMol_bin # binary *.plt file
gOpenMol_ascii # ascii *.plt file
Gaussian_Cube # Gaussian-cube format
# (an ASCII file)
MO("MyOrbital-15.plt",15,0); # orbital to plot
MO("MyOrbital-16.plt",16,0); # orbital to plot
UNO("MyUNO-48.plt",48); # UHF-NO to plot
ElDens("MyElDens.plt"); # Electron density
SpinDens("MySpinDens.plt"); # Spin density
end
18
There were some reports of problems with the program on Windows platforms. Apparently it is better to choose
the display settings as ‘true color 32 bit’ rather than ‘high 16 bit’. Thanks to Thomas Brunold!
534 6 Detailed Documentation
Figure 6.31: The total electron density (shown as a mesh) and the spin density (shown with solid
contours) of the H2 CO+ cation radical as calculated by the RI-BP/VDZP method.
Note the small negative spin density at the carbon atom. The spin density was cal-
culated at 120x120x120 resolution which takes much longer than the DFT calculation
itself.
NOTE:
• it is admittedly inconvenient to manually input the dimension of the cube that is used for plotting. If you do
nothing such that min1 = max1 = min2 = max2 = min3 = max3=0 then the program will try to be smart
and figure out a good cube size by itself. It will look at the minimum and maximum values of the coordinates
and then add 7 bohrs to each dimension in the hope to properly catch all wavefunction tails.
Sometimes you will want to produce orbital plots after you looked at the output file and decided which orbitals you
are interested in. In this case you can also run the orca plot program in a crude interactive form by invoking it as:
orca_plot MyGBWFile.gbw -i
This will only provide you with a small subset of the capabilities of this program but may already be enough to
produce the plots you want to look at. Note that for the name of the GBW-file you may as well input files that
result from natural orbitals (normally *.uno), corresponding orbitals (normally *.uco) or localized orbitals (normally
*.loc).
• First of all the molecular geometry must be save by choosing XYZFile=true in the [OUTPUT] block. This will
produce a straightforward ascii file containing the molecular geometry (or simply ! XYZFile).
• After having produced the plot files start gOpenMol and choose File-Import-Coords. In the dialog choose
the XYZ format and select the file. Then press apply and dismiss. The molecule should now be displayed in
the graphics window.
6.23 Orbital and Density Plots 535
• After having done all this choose Plot-Contour and select the Browse button to select the appropriate
file. Then press Import File to read it in. NOTE: you can only directly read file that were produced in
gOpenMol bin format. If you have chosen gOpenMol ascii you must first use the gOpenMol file conversion
utility under Run-Pltfile (conversion) to produce the binary plt file.
• After having read the plt file choose the appropriate isocontour value (one for the positive and one for the
negative lobes of an orbital) and select suitable colors via Colour(n) to the right of the isocontour value. The
Details button allows you to choose between solid and mesh representation and other things.
• Once the plot looks the way you like, use File-Hardcopy to produce a publication quality postscript or bitmap
picture that can be imported into any word processing or graphics software.
The Molekel program by Stefan Portmann (http://www.cscs.ch/molekel/) is another beautiful and easy-to-use
graphics tool that is recommended in combination with ORCA. You may even find it a little easier to use than
gOpenMol but this may be a matter of personal taste. In order to produce plots with Molekel follow the following
procedure:
• Produce Gaussian-Cube files (and optionally also an XYZ file) with ORCA as described above.
• Start Molekel and use the right mouse button to obtain the Load menu.
• Use the right mouse button again to select the Surface menu
• In the Color menu (also available via the right mouse button) you can adjust the colors and in the main menu
the display options for your molecule. Default settings are in a startup file that you can modify to suit your
taste. More details are in the Molekel manual – check it out; it can do many other useful things for you too!
This utility program is used to turn calculated spectra into a format that can be plotted with standard graphics
programs. The usage is simple (for output examples see for example sections 6.14.2, 5.9.3.1 and 5.9.3.2):
NOTE:
• The input to this program can either be a normal output file from an ORCA calculation or a ORCA .hess file
if ir or Raman spectra are desired
– Input-file.spc.stk: This file contains the individual transitions (wavenumber and intensity)
• The absorption plot has five columns: The first is the wavenumber in reciprocal centimeters, the second the
total intensity and the third to fifth are the individual polarizations (i.e. assuming that the electric vector of
the incoming beam is parallel to either the input x-, or y- or z-axis respectively). The last three columns are
useful for interpreting polarized single crystal spectra.
6.24 Utility Programs 537
This program calculates CHELPG atomic charges according to Breneman and Wiberg [342]. The atomic charges are
fitted to reproduce the electrostatic potential on a regular grid around the molecule, while constraining the sum of all
atomic charges to the molecule’s total charge.
orca_chelpg MyJob.gbw
First Argument : The gbw file containing the correct geometry and basis set.
The program uses three adjustable parameters, which can also be set in a separate chelpg input block
%chelpg
GRID 0.3 # Spacing of the regular grid in Ang
RMAX 2.8 # Maximum distance of all atoms to any
# gridpoint in Ang
VDWRADII COSMO # VDW Radii of Atoms, COSMO default
BW # Breneman, Wiberg radii
end
In this case the ORCA automatically calculates the CHELPG charges at the end of the calculation. Automatic
calculation of CHELPG charges using the default values can also be achieved by specifying
! CHELPG
In the simple input section. By default the program uses the COSMO VDW radii for the exclusion of gridpoints near
the nuclei, as these are defined for all atoms. The BW radii are similar, but only defined for very few atom types.
This program is used in conjunction with gOpenMol (or xmol) to produce animations or plots of vibrational modes
following a frequency run. The usage is again simple and described in section 5.9.3.5 together with a short description
of how to produce these plots in gOpenMol.
This is a small “standalone” program to perform vibrational analysis. The idea is that the user has some control over
things like the atomic masses that enter the prediction of vibrational frequencies but are independent of the electronic
structure calculation as such.
The program takes a “.hess” file as input and produces essentially the same output as follows the frequency calculation.
The point is that the “.hess” is a user-editable textfile that can be manually changed to achieve isotope shift predictions
and the like. The usage together with an example is described in section 5.9.3.6. If you pipe the output from the
screen into a textfile you should also be able to use orca mapspc to plot the modified IR, Raman and NRVS spectra.
538 6 Detailed Documentation
Localization of the orbitals can be requested at the end of any ORCA calculation. Details are set in the %loc block.
Setting the flags OCC/VIRT to true will request a localization of the subspace. If both flags are set, two consecutive
localization are performed. The localized orbitals are stored in the form of a standard GBW file named .loc. Keep
in mind that the localization of the occupied orbitals might change the total energy depending on what type of
calculation you want to perform thereafter. For RHF and UHF there shouldnt be any problems, but for CASSCF the
keyword OCC is not sufficient. CASSCF is not invariant to rotation of all the occupied orbitals.
Calling the orca loc program directly from shell, a localization with a customized orbital ranges is possible. The
orca loc program requires an input of its own. The input is a texfile containing the necessary parameters. If no input
is specified, orca loc returns a help-file with a description of the necessary input-parameters. You need to specifiy
in/output gbw-files, along with orbital ranges and the localization method to be used. A source of confusion is the
operator line op (alpha = 0 or beta = 1). For CASSCF, this should be set to zero in example
If the input file is called myloc.inp, running ”orca loc myloc.inp” will produce the LocalizedOrbitals.gbw file containing
the localized orbitals.
The use of this program is described more fully in section 6.23. It is used to create three dimensional graphics data
for visualization. It is also possible to run this program interactively:
6.24 Utility Programs 539
orca_plot gbwfile -i
You will then get a simple, self-explaining menu that will allow you to generate .plt files directly from the .gbw files
without restarting or running a new job.
It is possible to use the module to create difference densities between the ground and excited states from CIS or
TD-DFT calculations. This is implemented as an extra interactive menu point that is (hopefully) self explaning.
This little utility program can be used to convert gbw files into mkl files which are of ASCII format. This is useful
since molekel can read these files and use them for plotting and the like. The contents of the mkl file is roughly the
same as the gbw file (except for the internal flags of ORCA) but this is an ASCII file which can also be read for
example by your own programs. It would therefore be a good point for developing an interface. It is likely that this
functionality will be further expanded in the future.
orca_2mkl BaseName
(will produce BaseName.mkl from BaseName.gbw)
orca_2mkl BaseName -molden
writes a file in molden format
orca_2mkl BaseName -mkl
writes a file in MKL format
This utility program converts a gbw file into a wfn file that can be used for topological analysis of the electron density
by other programs. Currently this works only for closed-shell wave functions. The usage is very simple – just type AIM
in the simple input line or use
orca_2aim BaseName
(will produce BaseName.wfn from BaseName.gbw)
This program calculates the electrostatic potential at a given set of user defined points. It takes four arguments:
First : The gbw file containing the correct geometry and basis set
Second : The desired density matrix in this basis (perhaps use the KeepDens keyword)
6(number_of_points)
5.0 0.0 0.0 (XYZ coordinates)
-5.0 0.0 0.0
0.0 5.0 0.0
0.0-5.0 0.0
0.0 0.0 5.0
0.0 0.0 -5.0
Fourth : The target file which will then contain the electrostatic potential. E.g.
6 (number of points)
VX1 VY1 VZ1 (potential for first point)
VX2 VY2 VZ2 (potential for second point)
Etc.
It should be straightforward for you to read this file and use the potential for whatever purpose.
This utility program is used to calculate the relative orientation between calculated hyperfine coupling (HFC)/nuclear
quadrupole coupling (NQC) tensors and a reference tensor (the calculated molecular g-/D-tensor). The orca euler
program is run by default in an ORCA job after the calculation of HFCs or NQCs, if g- or D-tensor are also calculated
in the same job. The utility program can also be run as a stand-alone program. In this case the .prop file of a previous
NQC/HFC- and D- or g-tensor calculation must be available.
The orientation between the tensors is calculated in terms of a 3x3 rotational matrix R. This is parametrized by the
three so-called Euler angles α, β and γ. These angles define the relative orientation between two tensors A and B by
three successively applied rotations around different axes in order to align A with B. In the commonly used z-y-z
convention these three rotations are:
• Rotate Ax0 y0 z0 counterclockwise around its y’ axis by β to give Ax00 y00 z00 .
• Rotate Ax00 y00 z00 counterclockwise around its z” axis by γ to align with B.
options
-refg/-refD: Reference tensor (g-tensor or D-tensor, default is -refg)
-conv zyz/-conv zxz: Euler rotation convention (default is zyz)
-order: Ordering of the reference tensor (x, y, z) with respect to
ORCA output (min, mid, max)
-plotA: plot the HFC-tensors
6.24 Utility Programs 541
NOTE:
• By default the D-tensor is used as reference tensor only if S > 12 and if |D|>0.3 cm−1 ; in all other cases the
g-tensor is used as reference tensor. The user can manually select the reference tensor – if the information is
available in the prop-file – by using –refg or -refD.
• By default the Euler rotation in the z-y-z convention is used. The z-x-z convention can be selected manually by
using the option –conv zxz.
• By default the axes of the g- or D-tensor are assigned depending on their magnitude. gmin → gx , gmid → gy ,
gmax → gz (similarly for D). This ordering can be modified manually when running the standalone program as
shown in the following examples:
-order 3 2 1: min → z
mid → y
max → x
-order 1 -2 3: min → x
mid → y (flipped in the orientation)
max → z
• The nuclear hyperfine and quadrupole coupling tensors can be plotted (in the xyz-file format) by the orca euler
program using –plotA or –plotQ. The HFC tensor for atom 3 (counting starts at zero) is e.g. stored in the file
prop-file.3.A.xyz, the respective NQC tensor is stored in prop-file.3.Q.xyz. In these xyz files the position
of four atoms (He, Ne, Ar, Kr) is given. The x-, y- and z-direction of the tensor are in the direction of the
vectors between He-Ne, He-Ar and He-Kr.
• The actual definition of the used rotation matrix and more information on the relative orientation can be
printed by using the option –detail.
542
A difficult but important subject in electronic structure theory is to balance the price/accuracy ratio of the calculations.
This ratio is governed by: (a) the method used, (b) the basis set used and (c) the cutoffs and tolerances used. There
are certainly differing opinions among scientists and I merely quote a few general, subjective points:
• Calculations with minimal basis sets are always unreliable and are only good for explorations. This is also true
for small split-valence basis sets like 3-21G, 3-21GSP and perhaps also 4-22G. These basis sets are significantly
more reliable than their minimal basis counterparts but are not capable of delivering quantitatively reliable
results. They may, however, be the only choice if very large molecules are targeted.
• In our own research we almost exclusively use the basis sets of the kralsruhe group. They have been updated
to the ‘def2’ set that is more consistent than the older basis sets.
• Def2-SV(P) is the smallest and computationally efficient split-valence basis set and is largely identical to the
old SV(P), except for the transition metals which have more consistent polarization sets.
• Def2-TZVP is substantially different from the old TZVP. It has been realized that if one invests into an
accurate triple-zeta description of the valence region it makes limited sense to only employ a single polarization
function. The accuracy is then limited by the polarization set and is not much better than what one gets from
SV(P). Hence, def2-TZVP contains a single p-set for hydrogens but is otherwise very similar to the old TZVPP
basis set, e.g. it contains 2d1f polarization for main group elements and much more extensive polarization
sets for transition metals. The highest polarization function (f for main group) does add substantially to the
computational effort. Hence, we often use def2-TZVP(-f). Together with RI or RIJCOSX this, or the more
complete def2-TZVP, is still computationally economic enough for most studies.
• Def2-TZVPP is a fully consistent triple-zeta basis set that provides excellent accuracy for SCF calculations
(HF and DFT) and is still pretty good for correlated calculations. It is a good basis set to provide final single
point energies.
• Def2-QZVPP is a high accuracy basis set for all kinds of calculations. It provides SCF energies near the
basis set limit and correlation energies that are also excellent. It is computationally expensive but with RI
and RIJCOSX in conjunction with parallelization it can often still be applied for final single-point energy
calculations. In conjunctions with such large basis sets one should also increase the accuracy of the integration
grids in DFT and RIJCOSX — it would be a shame to limit the accuracy of otherwise very accurate calculations
by numerical noise due to the grid.
• Correlation consistent basis sets prpvide good correlation energies but poor to very poor SCF energies. For
the same size, the ano-PVDZ basis sets are much more accurate but are also computationally more expensive.
Except for systematic basis set extrapolation we see little reason to use the cc bases.
• Pople basis sets are somewhat old fashioned and also much less consistent across the periodic table than the
basis from the Karlsruhe group. Hence, we generally prefer the latter.
7.1 Cost versus Accuracy 543
• For scalar relativistic calculations we strongly recommend to use the SARC bases in conjunction with the
recontractions of the Kralsruhe bases. They are automatically loaded for ZORA and DKH. They are also
flexible enough in the core region for general purpose and spectroscopic applications.
• Effective core potentials lead to some savings (but not necessarily spectacular ones) compared to all-electron
relativistic calculations. For accurate results, small core ECPs should be used. They are generally available for
Karlsruhe type basis sets for elements past the first transition row. We prefer Stuttgart–Dresden ECPs over
LANL ones. For the first transition row, the choices are more meager. Here Karlsruhe basis sets do not exist
in conjunction with ECPs and you are bound to either SDD or LANL of which we recommend the former.
Geometries and energies are usually good from ECPs, for property calculations we recommend to switch to all
electron scalar relativistic calculations using ZORA (magnetic properties) or DKH (electric properties).
• You can take advantage of a built-in basis set (Print[P Basis]=2) and then modify it by uncontracting
primitives, adding steeper functions etc. (fully uncontracted bases are generated via uncontract in %basis)
Alternatively some basis sets exist that are of at least double-zeta quality In the core region including the DZP
and Dunning basis sets. For higher accuracy you may want to consider the CAUG series of basis sets.
• Likewise, if you are doing calculations on anions in the gas phase it is advisable to include diffuse functions in
the basis set. Having these diffuse functions around, however, makes things much more difficult as the locality
of the basis set is significantly reduced. If these functions are included it is advisable to choose a small value
for Thresh (10−12 or lower).
• In cases of charged molecules the COSMO feature is really useful in providing more realistic charge distributions
and energetics.
• The integration grids (in DFT) used should be viewed together with the basis set. If large basis set calculations
are converged to high accuracy it is advisable to also used large DFT integration grids like (Grid=5) or even
(Grid=6). For ‘unlimited’ accuracy (i.e. benchmark calculations) it is probably best to use product grids
(Grid=0) with a large value for IntAcc (perhaps around 6.0). The default grids have been chosen such that
they provide adequate accuracy at the lowest possible computational cost. You should be aware that for large
molecules the exchange-correlation integration is usually not the dominating factor (not even in combination
with RI-J).
• Similarly important is the value of Thresh that will largely determine the tunaround time for direct SCF
calculations. It may be possible to go to values of 10−6 –10−8 which will result in large speed-ups. However,
the error in the final energy may then be 3 orders of magnitude larger than the cutoff or, sometimes, your
calculation will fail to converge, due to the limited integral accuracy. In general it will not be possible to
converge a direct SCF calculation to better than Thresh (the program will also not allow this). For higher
accuracy values of maybe 10−10 –10−12 may be used with larger molecules requiring smaller cutoffs. In cases
where the SCF is almost converged but then fails to finally converge (which is very annoying) decreasing Thresh
(and possibly switch to NRSCF) may be a good idea. In general, TCut should be around 0.01×Thresh in order
to be on the safe side.
• DFT calculations have many good features and in many cases they produce reliable results. In particular if you
study organic molecules it is nevertheless a good idea to check on your DFT results using MP2. MP2 in the
form of RI-MP2 is usually affordable and produces reliable results (in particular for weaker interactions where
DFT is less accurate). In case of a large mismatch between the MP2 and DFT results the alarm clock rings —
in many such cases MP2 is the better choice. Remember that SCS-MP2 (RI-SCS-MP2) will usually produce
more accurate results than MP2 itself.
• Coupled cluster calculations become more and more feasible and should be used whenever possible. The
LPNO-CCSD calculations are available for single-point closed shell molecules and provide accurate results.
However, a coupled cluster study does require careful study of basis set effects because convergence to the basis
544 7 Some Tips and Tricks
set limit is very slow. The established basis set extrapolation schemes may be very helpful here. For open-shell
molecules and in particular for transition metals one cannot be careful enough with the reference. You have to
carefully check that the Hartree-Fock calculation converged to the desired state in order to get coupled cluster
results that are meaningful. Orbital optimized MP2, CASSCF or DFT orbitals may help but we have often
encountered convergence difficulties in the coupled cluster equations with such choices.
• Generally speaking, CEPA is often better than CCSD and approaches the quality of CCSD(T). It is, however,
also a little less robust than CC methods because of the less rigorous treatment of the single excitations in
relation to electronic relaxation.
• Don’t forget: “Computers don’t solve problems – people do”. Not denying the importance and desire to obtain
accurate numbers: don’t forget that in the end it is the molecule and its chemistry or spectroscopy that we
want to learn something about. The fact that you may be able to compute one or the other number a little
more accurate doesn’t mean that this helps us understanding the physics and chemistry of our target system
any better. The danger of getting locked into technicalities and miss the desired insight is real!
Despite all efforts you may still find molecules where SCF convergence is poor. These are almost invariably related
to open shell situations and the answer is almost always to provide ‘better’ starting orbitals. Here is my standard
strategy to deal with this (assuming a DFT calculation):
• Perform a small basis set (SV) calculation in using the LSD or BP functional and RI approximation with a cheap
(e.g. DeMon J) auxiliary basis set. Set Convergence=Loose and MaxIter=200 or so. Turn the FinalGrid off
(NoFinalGrid). The key point is to use a large damping factor and damp until the DIIS comes into a domain of
convergence. This is accomplished by SlowConv or even VerySlowConv. If you have an even more pathological
case you may need to set DampFac larger and DampErr smaller than chosen by these defaults. This calculation is
quite crude and may take many cycles to converge. It will however be rather quick in terms of wall clock time.
If the DIIS gets stuck at some error 0.001 or so the SOSCF (or even better NRSCF) could be put in operation
from this point on.
• Use the orbitals of this calculation and GuessMode=CMatrix to start a calculation with the target basis set. In
DFT I normally use a pure functional (e.g. Functional=BP). This calculation normally converges relatively
smoothly.
• Use the target functional, grid etc. to get the final calculation converged. In many cases this should converge
fairly well now.
• Try to start from the orbitals of a related closed shell species. In general closed shell MO calculations tend to
converge better. You then hope to reach the convergence radius of another converger for the open shell case.
• Try to start from the orbitals of a more positive cation. Cation calculations tend to converge better.
• If you are running a CASSCF job, try to start from the natural orbitals of a MP2 or simple selected CI
calculation. That will usually lead to a much better starting point (of course this does not apply if the MP2
calculation is too expensive; but it rarely will be if you are courageous enough to try CASSCF ^).
¨
• Try to start from a calculation with a smaller basis set. Smaller basis sets converge better. Then you have the
choice of GuessMode=CMatrix or GuessMode=FMatrix which will affect the convergence behavior.
7.3 Choice of Theoretical Method 545
• Use large level shifts. This increases the number of iterations but stabilizes the converger. (shift shift 0.5
erroff 0 end)
• If your calculations converge to, say 10−4 in the DIIS error and then “creep” it is usually a good idea to invoke
the second order (NRSCF) converger. Close to the solution it is incredibly strong and will usually converge in 1
or 2 macro-iterations. Each of these cost perhaps 5–7 or maybe even 10 normal SCF cycles but after the DIIS
has brought you into the radius of the convergence of the NR procedure its convergence properties are excellent.
• If you are doing DFT calculations try to start from a Hartree-Fock solution for your molecule. HF calculations
tend to converge somewhat better because they have a larger HOMO-LUMO gap (there are of course exceptions).
• Carefully look at the starting orbitals (Print[P GuessOrb]=1) and see if they make sense for your molecule.
Perhaps you have to reorder them (using Rotate) to obtain smooth convergence.
• Most of the time the convergence problems come from “unreasonable” structures. Did you make sure that your
coordinates are in the correct units (Angström or Bohrs?) and have been correctly recognized as such by the
program?
• If you have trouble with UHF calculations try ROHF (especially SAHF or CAHF) first and then go to the
UHF calculation.
• It may sometimes be better to converge to an undesired state and then take the orbitals of this state, reorder
them (using Rotate) and try to converge to the desired state.
• Try to start the calculation with a large damping factor (DampFac=0.90; or even larger) and specify a relatively
small DIIS error to turn damping off (say DampErr=0.02;). This will increase the number of cycles but may
guide you into a regime were the calculation actually converges.
• If nothing else helps, stop, grab a friend and go to the next pub (you can also send me an unfriendly e-mail but
this will likely not make your calculation converge any quicker; ^).
¨
The array of available functionals makes it perhaps difficult to decide which one should be used. While this is a matter
of ongoing research and, in the end, can only be answered by experimentation and comparison to experimental results
or high-level ab initio calculations, I may attempt to give some guidelines.
The simplest density functionals (and in general the least accurate) are the local functionals (Functional=LSD).
Although several variants of the local DFT exist in ORCA there is little to choose among them – they give more or
less the same result.
The gradient corrected functionals are (very slightly) more expensive because the gradient of the electron density at
each point in space must be computed but they are also significantly more accurate for structures and energetics of
molecules. The various gradient corrected functionals (=GGA functionals) are generally similar in their behavior. The
BP functional is probably the most widely used in transition metal chemistry. The BLYP, PBE or PW91 functionals
may also be considered. PWP has been shown to be rather good for hyperfine coupling predictions of light nuclei in
radicals. In addition, since no Hartree-Fock exchange is used you have the ability to speed up the calculation by a
factor of 4-40 if the RI approximation is employed. This approximation is really advisable for the LSD and GGA
functionals since it leads to very little or no loss in accuracy while giving large speedups. It is, in fact, automatically
chosen to be operative when you use pure functionals.
546 7 Some Tips and Tricks
In addition, meta-GGA’s (TPSS) are available in ORCA and may provide superior results for certain properties
compared to standard GGA’s. They are somewhat but not much more expensive to evaluate than standard GGA’s.
For many properties (but not necessarily for geometries), more accurate results are usually given by the hybrid density
functionals that incorporate part of the HF exchange. The computational effort for these is higher than for the GGA
functionals because the HF exchange needs to be computed exactly. Very large speedups result if this is done via the
RIJCOSX approximation. Nevertheless for energetics, properties and for predictions of charge and spin densities the
hybrids appear to be the best choice. The prototype functional of this kind is B3LYP, which has been very widely
used throughout chemistry and is successful for a wide range of molecular properties. Other hybrids have been less
well tested but maybe a good choice in specific situations, for example the PBE0 functional has been advertised for
NMR chemical shift predictions and other properties. From my personal experience I can also recommend PBE0
and PWP1 as two functionals that give good predictions for EPR g-values and hyperfine couplings. The TPSSh
meta-GGA hybrid is also very succesful in this area.1
Together with DFT, it is often observed that the atom-pairwise dispersion correction of Stefan Grimme substantially
improves the results at no extra cost.
Don’t forget that in present days the MP2 method becomes affordable for molecules of significant size and there are
quite a number of instances where MP2 (and particularly SCS-MP2) will do significantly better than DFT even if it
takes a little longer (the RI approximation is also highly recommended here). The perturbatively corrected functionals
(B2PLYP) may also be a very good choice for many problems (at comparable cost to MP2; note that even for large
molecules with more than 1000 basis functions the MP2 correction only takes about 10-20% of the time required for
the preceeding SCF calculation if the RI approximation is invoked).
Beyond DFT and (SCS)MP2 there are coupled cluster methods and their implementation in ORCA is efficient. With
the local pair natural orbital methods you can even study molecules of substantial size and with appealing turnaround
times.
When to go to multireference methods is a more complicated question. Typically, this will be the case if multiplets
are desired, pure spin functions for systems with several unpaired electrons, in bond breaking situations or for certain
classes of excited states (loosely speaking: whenever there are weakly interacting electrons in the system). However,
whenever you decide to do so, please be aware that this require substantial insight into the physics and chemistry
of the problem at hand. An uneducated use of CASSCF or MRCI/MRPT method likely yields numbers that are
nonsensical and that at tremendous computational cost. Here, there is no substitute for experience (and patience
^).
¨
1
Some researchers like to adjust the amount of Hartree-Fock exchange according to their needs or what they think
is “better” than the standard. This increases the semiempirical character of the calculations and may represent
fixes that only work for a given class of compounds and/or properties while worsening the results for others. With
this caveat in mind it is one of the things that you are free to try if you like it. However, we do not recommend it
since it will deteriorate the comparability of your results with those of other workers the vast majority of which
use standard functionals. An alternative to changing the amount of HF exchange could be to simply construct a
linear regression for a number of known cases and then use linear regression.
547
Neese, F. (2012) The ORCA program system, Wiley Interdiscip. Rev.: Comput. Mol. Sci., 2, 73–78.
Please do not only cite the above generic reference, but also cite in addition the original papers that report the
development and ORCA implementation of the methods you have used in your studies! The following publications
describe functionality implemented in ORCA. We would highly appreciate if you cite them when you use the program.
Multireference CI Module and its application to EPR properties and optical spectra:
1. Ganyushin, D.; Neese, F. (2013) A fully variational spin-orbit coupled complete active space self-consistent
field approach: Application to electron paramagnetic resonance g-tensors, J. Chem. Phys., 138, 104113.
2. Atanasov, M.; Zadrozny, J. M.; Long, J. R.; Neese, F. (2013) A theoretical analysis of chemical bonding,
vibronic coupling, and magnetic anisotropy in linear iron(II) complexes with single-molecule magnet behavior,
Chem. Sci., 4, 139–156.
3. Atanasov, M.; Ganyushin, D.; Pantazis, D. A.; Sivalingam, K.; Neese, F. (2011) Detailed Ab Initio First-
Principles Study of the Magnetic Anisotropy in a Family of Trigonal Pyramidal Iron(II) Pyrrolide Complexes,
Inorg. Chem, 50, 7460–7477.
4. Neese, F.; Pantazis, D. A. (2011) What is not required to make a single molecule magnet, Faraday Discussions,
148, 229–238.
5. Duboc, C.; Ganyushin, D.; Sivalingam, K.; Collomb, M. N.; Neese, F. (2010) Systematic Theoretical Study of
the Zero-Field Splitting in Coordination Complexes of Mn(III). Density Functional Theory versus Multireference
Wave Function Approaches, J. Phys. Chem. A, 114, 10750–10758.
6. Sundararajan, M.; Ganyushin, D.; Ye, S.; Neese, F. (2009) Multireference ab initio studies of Zero-Field
Splitting and Magnetic Circular Dichroism Spectra of Tetrahedral Co(II) Complexes, Dalton Trans., 30,
6021–6036.
7. Ganyushin, D.; Neese, F. (2008) First principles calculation of magnetic circular dichroism spectra, J. Chem.
Phys., 128, 114117.
8. Petrenko, T.; Neese, F. (2007) A general efficient quantum chemical method for predicting absorption
bandshapes, resonance Raman spectra and excitation profiles for larger molecules. J. Chem. Phys., 127, 164319.
9. Neese, F. (2007) Analytic Derivative Calculation of Electronic g-Tensors based on Multireference Configuration
Interaction Wavefunctions. Mol. Phys. (honorary issue for Prof. Peter Pulay), 105, 2507–2514.
10. Neese, F.; Petrenko, T.; Ganyushin, D.; Olbrich, G. (2007) Advanced Aspects of ab initio Theoretical
Spectroscopy of Open-Shell Transition Metal Ions. Coord. Chem. Rev., 205, 288–327.
548 8 Publications Related to ORCA
11. Neese, F. (2006) Importance of Direct Spin-Spin Coupling and Spin-Flip Excitations for the Zero-Field
Splittings of Transition Metal Complexes: A Case Study, J. Am. Chem. Soc., 128, 10213–10222.
12. Chalupský, J.; Neese, F.; Solomon, E.I.; Ryde, U.; Rulı́šek, L. (2006) Identification of intermediates in the
reaction cycle of multicopper oxidases by quantum chemical calculations of spectroscopic parameters, Inorg.
Chem., 45, 11051–11059.
13. Neese, F. (2006) Theoretical spectroscopy of model-nonheme [FeIV O(NH3 )5 ]2+ complexes with triplet and
quintet ground states using multireference ab initio and density functional theory methods. J. Inorg. Biochem.
(special issue on high-valent Fe(IV)), 716–726.
14. Ganyushin, D.; Neese, F. (2006) First Principle Calculation of Zero-Field Splittings, J. Chem. Phys., 125,
024103.
15. Ray, K.; Weyhermüller, T.; Neese, F.; Wieghardt, K. (2005) Electronic Structure of Square-Planar Bis(benzene-
1,2-dithiolate)metal Complexes [M(L)2 ]z (z = 2−, 1−, 0; M = Ni, Pd, Pt, Cu, Au): An experimental, Density
Functional and Correlated ab initio Study. Inorg. Chem., 44, 5345–5360.
16. Schöneboom, J.; Neese, F.; Thiel, W. (2005) Towards Identification of the Compound I Reactive Intermediate
in Cytochrome P450 Chemistry: A QM/MM Study of its EPR and Mössbauer Parameters, J. Am. Chem.
Soc., 127, 5840–5853.
17. Wanko, M.; Hoffmann, M.; Strodel, P.; Thiel, W.; Neese, F.; Frauenheim, T.; Elstner, M. (2005) Calculating
Absorption Shifts for Retinal Proteins: Computational Challenges J. Phys. Chem. B, 109, 3606–3615.
18. Neese, F. (2004) Sum Over States Based Multireference ab initio Calculation of EPR Spin Hamiltonian
Parameters for Transition Metal Complexes. A Case Study Mag. Res. Chem., 42, S187–S198.
19. Neese, F. (2003) Correlated ab Initio Calculation of Electronic g-Tensors Using a Sum Over States Formulation.
Chem. Phys. Lett., 380/5–6, 721–728.
20. Neese, F. (2003) A Spectroscopy Oriented Configuration Interaction Procedure, J. Chem. Phys., 119, 9428–
9443.
21. Neese, F. (2001) Configuration Interaction Calculation of Electronic g-Tensors in Transition Metal Complexes,
Int. J. Quant. Chem., 83, 104–114.
22. Neese, F.; Solomon, E.I. (1998) Calculation of Zero-Field Splittings, g-values and the Relativistic Nephelauxetic
Effect in Transition Metal Complexes. Application to High Spin Ferric Complexes. Inorg. Chem., 37, 6568–6582.
23. Riplinger, C.; Neese, F. (2013) An efficient and near linear scaling pair natural orbital based local coupled
cluster method, J. Chem. Phys., 138, 034106.
24. Liakos, D. G.; Neese, F. (2012) Improved Correlation Energy Extrapolation Schemes Based on Local Pair
Natural Orbital Methods, J. Phys. Chem. A, 116, 4801–4816.
25. Huntington, L. M. J.; Hansen, A.; Neese, F.; Nooijen, M. (2012) Accurate thermochemistry from a parameterized
coupled-cluster singles and doubles model and a local pair natural orbital based implementation for applications
to larger systems, J. Chem. Phys., 136, 064101.
26. Izsak, R.; Hansen, A.; Neese, F. (2012) The resolution of identity and chain of spheres approximations for the
LPNO-CCSD singles Fock term, Mol. Phys., 110, 2413–2417.
549
27. Liakos, D. G.; Hansen, A.; Neese, F. (2011) Weak Molecular Interactions Studied with Parallel Implementations
of the Local Pair Natural Orbital Coupled Pair and Coupled Cluster Methods, J. Chem. Theory Comput., 7,
76–87.
28. Hansen, A.; Liakos, D. G.; Neese, F. (2011) Efficient and accurate local single reference correlation methods
for high-spin open-shell molecules using pair natural orbitals, J. Chem. Phys., 135, 214102.
29. Kollmar, C.; Neese, F. (2011) An orbital-invariant and strictly size extensive post-Hartree-Fock correlation
functional, J. Chem. Phys., 135, 084102.
30. Kollmar, C.; Neese, F. (2011) The relationship between double excitation amplitudes and Z vector components
in some post-Hartree-Fock correlation methods, J. Chem. Phys., 135, 064103.
31. Neese, F.; Liakos, D.; Hansen, A. (2009) Efficient and accurate local approximations to the coupled cluster
singles and doubles method using a truncated pair natural orbital basis J. Chem. Phys., 131, 064103.
32. Neese, F.; Wennmohs, F.; Hansen, A. (2009) Efficient and accurate local approximations to coupled electron
pair approaches. An attempt to revive the pair-natural orbital method J. Chem. Phys., 130, 114108.
33. Kollmar, C.; Neese, F. (2010) The coupled electron pair approximation: variational formulation and spin
adaptation, Mol. Phys., 108, 2449–2458.
34. Neese, F.; Wennmohs, F.; Hansen, A.; Grimme, S. (2009) Accurate Theoretical Chemistry with Coupled
Electron Pair Models Acc. Chem. Res., 42(5), 641–648.
35. Wennmohs, F.; Neese, F. (2008) A Comparative Study of Single Reference Correlation Methods of the
Coupled-Pair Type, Chem. Phys. (70th birthday issue for Prof. Peyerimhoff), 343, 217–230.
36. Neese, F.; Valeev, E. F. (2011) Revisiting the Atomic Natural Orbital Approach for Basis Sets: Robust
Systematic Basis Sets for Explicitly Correlated and Conventional Correlated ab initio Methods?, J. Chem.
Theory Comput., 7, 33–43.
37. Sandhoefer, B.; Kossmann, S.; Neese, F. (2013) Derivation and assessment of relativistic hyperfine-coupling
tensors on the basis of orbital-optimized second-order Moller-Plesset perturbation theory and the second-order
Douglas–Kroll–Hess transformation, J. Chem. Phys., 138, 104102.
38. Kossmann, S.; Neese, F. (2010) Correlated ab Initio Spin Densities for Larger Molecules: Orbital-Optimized
Spin-Component-Scaled MP2 Method, J. Phys. Chem. A, 114, 11768-11781.
39. Neese, F.; Schwabe, T.; Kossmann, S.; Schirmer, B.; Grimme, S. (2009) Assessment of Orbital Optimized,
Spin-Component Scaled Second Order Many Body Perturbation Theory for Thermochemistry and Kinetics. J.
Chem. Theory Comput., 5, 3060-3073.
40. Izsak, R.; Neese, F. (2011) An overlap fitted chain of spheres exchange method, J. Chem. Phys., 135, 144105.
550 8 Publications Related to ORCA
41. Kossmann, S.; Neese, F. (2010) Efficient Structure Optimization with Second-Order Many-Body Perturbation
Theory: The RIJCOSX-MP2 Method, J. Chem. Theory Comput., 6, 2325-2338.
42. Kossmann, S.; Neese, F. (2009) Comparison of Two Efficient Approximate Hartree–Fock Approaches. Chem.
Phys. Lett., 481, 240-243.
43. Neese, F.; Wennmohs, F.; Hansen, A.; Becker, U. (2009) Efficient, approximate and parallel Hartree–Fock and
hybrid DFT calculations. A ‘chain-of-spheres’ algorithm for the Hartree–Fock exchange, Chem. Phys., 356,
98–109.
44. Neese, F. (2003) An Improvement of the Resolution of the Identity Approximation for the Calculation of the
Coulomb Matrix, J. Comp. Chem., 24, 1740–1747.
45. Sandhoefer, B.; Neese, F. (2012) One-electron contributions to the g-tensor for second-order Douglas–Kroll–Hess
theory, J. Chem. Phys., 137, 094102.
46. Ganyushin, D.; Gilka, N.; Taylor, P. R.; Marian, C. M.; Neese, F. (2010) The resolution of the identity
approximation for calculations of spin-spin contribution to zero-field splitting parameters, J. Chem. Phys., 132,
144111.
47. Duboc, C.; Ganyushin, D.; Sivalingam, K.; Collomb, M. N.; Neese, F. (2010) Systematic Theoretical Study of
the Zero-Field Splitting in Coordination Complexes of Mn(III). Density Functional Theory versus Multireference
Wave Function Approaches, J. Phys. Chem. A, 114, 10750–10758.
48. Neese, F. (2009) First principles approach to Spin-Hamiltonian Parameters, invited chapter in Misra, S.K.
Multifrequency EPR: Theory and Applications, Wiley-VCH, pp. 297–326.
49. Pantazis, D. A.; Orio, M.; Petrenko, T.; Messinger, J.; Lubitz, W.; Neese, F. (2009) A new quantum chemical
approach to the magnetic properties of oligonuclear transition metal clusters: Application to a model for the
tetranuclear manganese cluster of Photosystem II Chem. Eur. J., 15(20), 5108–5123.
50. Riplinger, C.; Kao, J.P.Y.; Rosen, G.M.; Kathirvelu, V.; Eaton, G.R.; Eaton, S.S.; Kutateladze, A.; Neese
F. (2009) Interaction of Radical Pairs Through-Bond and Through-Space: Scope and Limitations of the
Point-Dipole Approximation in Electron Paramagnetic Resonance Spectroscopy, J. Am. Chem. Soc., 131,
10092–10106.
51. Cirera, J.; Ruiz, E.; Alvarez, S.; Neese, F.; Kortus, J. (2009) How to Build Molecules with Large Magnetic
Anisotropy. Chem. Eur. J., 15(16), 4078–4087.
52. Neese, F. (2008) Spin Hamiltonian Parameters from First Principle Calculations: Theory and Application. In
Hanson, G.; Berliner, L. (Eds), Biological Magnetic Resonance, pp. 175–232.
53. Koßmann, S.; Kirchner, B.; Neese, F. (2007) Performance of modern density functional theory for the prediction
of hyperfine structure: meta-GGA and double hybrid functionals, Molec. Phys. (Arthur Schweiger memorial
issue), 105, 2049–2071.
54. Neese, F. (2007) Calculation of the Zero-Field Splitting Tensor Using Hybrid Density Functional and Hartree-
Fock Theory. J. Chem. Phys., 127, 164112.
55. Neese, F. (2006) Importance of Direct Spin-Spin Coupling and Spin-Flip Excitations for the Zero-Field
Splittings of Transition Metal Complexes: A Case Study, J. Am. Chem. Soc., 128, 10213–10222.
551
56. Sinnecker, S.; Neese, F. (2006) Spin-Spin Contributions to the Zero-Field Splitting Tensor in Organic Triplets,
Carbenes and Biradicals – A Density Functional and ab initio Study. J. Phys. Chem. A, 110, 12267–12275.
57. Sinnecker, S.; Rajendran, A.; Klamt, A.; Diedenhofen, M.; Neese, F. (2006) Calculation of Solvent Shifts on
Electronic G-Tensors with the Conductor-Like Screening Model (COSMO) and its Self-Consistent Generalization
to Real Solvents (COSMO-RS), J. Phys. Chem. A, 110, 2235–2245.
58. Neese, F.; Wolf, A.; Reiher, M.; Fleig, T.; Hess, B.A. (2005) Higher Order Douglas-Kroll Calculation of Electric
Field Gradients, J. Chem. Phys., 122, 204107.
59. Neese, F. (2005) Efficient and Accurate Approximations to the Molecular Spin-Orbit Coupling Operator and
their use in Molecular g-Tensor Calculations, J. Chem. Phys., 122, 034107.
60. Ray, K.; Begum, A; Weyhermüller, T.; Piligkos, S.; van Slageren, J.; Neese, F.; Wieghardt, K. (2005) The
Electronic Structure of the Isoelectronic, Square Planar Complexes [FeII (L)2 ]2− and [CoIII (LBu )2 ]− (L2− and
(LBu )2− = benzene-1,2-dithiolates): an Experimental and Density Functional Theoretical Study, J. Am. Chem.
Soc., 127, 4403–4415.
61. Neese, F. (2003) Metal and Ligand Hyperfine Couplings in Transition Metal Complexes. The Effect of
Spin-Orbit Coupling as Studied by Coupled Perturbed Kohn-Sham Theory and Hybrid Density Functionals, J.
Chem. Phys., 117, 3939–3948.
62. Neese, F. (2001) Prediction of Electron Paramagnetic Resonance g-values by Coupled Perturbed Hartree-Fock
and Kohn-Sham Theory. J. Chem. Phys., 115, 11080–11096.
63. Neese, F. (2001) Theoretical Study of Ligand Superhyperfine Structure. Application to Cu(II) Complexes. J.
Phys. Chem. A, 105, 4290–4299.
64. Neese, F. (2004) Definition of Corresponding Orbitals and the Diradical Character in Broken Symmetry DFT
Calculations on Spin Coupled Systems. J. Phys. Chem. Solids, 65, 781–785.
65. Petrenko, T.; Kossmann, S.; Neese, F. (2011) Efficient time-dependent density functional theory approximations
for hybrid density functionals: Analytical gradients and parallelization, J. Chem. Phys., 134, 054116.
66. Petrenko, T.; Krylova, O.; Neese, F.; Sokolowski, M. (2009) Optical Absorption and Emission Properties of
Rubrene: Insight by a Combined Experimental and Theoretical Study. New J. Phys., 11, 015001.
67. Grimme, S.; Neese, F. (2007) Double Hybrid Density Functional Theory for Excited States of Molecules, J.
Chem. Phys., 127, 154116.
68. Petrenko, T.; Ray, K.; Wieghardt, K.; Neese, F. (2006) Vibrational Markers for the Open-Shell Character of
Metal bis-Dithiolenes: An Infrared, resonance Raman and Quantum Chemical Study. J. Am. Chem. Soc., 128,
4422–4436.
69. Neese, F.; Olbrich, G. (2002) Efficient use of the Resolution of the Identity Approximation in Time-Dependent
Density Functional Calculations with Hybrid Functionals, Chem. Phys. Lett., 362, 170–178.
70. Petrenko, T.; Neese F. (2012) Efficient and automatic calculation of optical band shapes and resonance Raman
spectra for larger molecules within the independent mode displaced harmonic oscillator model, J. Chem. Phys.,
137, 234107.
71. Petrenko, T.; Neese, F. (2007) A general efficient quantum chemical method for predicting absorption
bandshapes, resonance Raman spectra and excitation profiles for larger molecules. J. Chem. Phys., 127, 164319.
72. Petrenko, T.; Krylova, O.; Neese, F. Sokolowski, M. (2009) Optical Absorption and Emission Properties of
Rubrene: Insight by a Combined Experimental and Theoretical Study. New J. Phys., 11, 015001.
73. Westphal, A.; Broda, H.; Kurz, P.; Neese, F.; Tuczek, F. (2012) Magnetic Circular Dichroism Spectrum of
the Molybdenum(V) Complex (Mo(O)Cl3 dppe): C-Term Signs and Intensities for Multideterminant Excited
Doublet States, Inorg. Chem., 51, 5748–5763.
74. van Slageren, J.; Piligkos, S.; Neese, F. (2010) Magnetic circular dichroism spectroscopy on the Cr(8)
antiferromagnetic ring, Dalton Trans., 39, 4999–5004.
75. Sundararajan, M.; Ganyushin, D.; Ye, S.; Neese, F. (2009) Multireference ab initio studies of Zero-Field
Splitting and Magnetic Circular Dichroism Spectra of Tetrahedral Co(II) Complexes, Dalton Trans., 30,
6021–6036.
76. Piligkos, S.; Slep, L.; Weyhermüller, T.; Chaudhuri, P.; Bill, E.; Neese, F. (2009) Magnetic Circular Dichroism
Spectroscopy of weakly exchange coupled dimers. A model study. Coord. Chem. Rev., 253, 2352–2362.
77. Ganyushin, D.; Neese, F. (2008) First principles calculation of magnetic circular dichroism spectra, J. Chem.
Phys., 128, 114117.
78. Neese, F.; Solomon, E.I. (1999) MCD C-term Signs, Saturation Behavior and Determination of Band Polariza-
tions in Randomly Oriented Systems with Spin S > 1/2. Applications to S = 1/2 and S = 5/2. Inorg. Chem.,
38, 1847–1865.
79. Römelt, M.; Ye, S.; Neese, F. (2009) Calibration of Mössbauer Isomer Shift Calculations for Modern Density
Functional Theory: meta-GGA and Double Hybrid Functionals Inorg. Chem., 48, 784–785.
80. Sinnecker, S.; Slep, L.; Bill, E.; Neese, F. (2005) Performance of Nonrelativistic and Quasirelativistic Hybrid
DFT for the Prediction of Electric and Magnetic Hyperfine Parameters in 57 Fe Mössbauer Spectra, Inorg.
Chem., 44, 2245–2254.
81. Neese, F. (2002) Prediction and Interpretation of Isomer Shifts in 57 Fe Mössbauer Spectra by Density Functional
Theory. Inorg. Chim. Acta (special Karl Wieghardt honorary issue), 337C, 181–192.
82. Petrenko T,; Sturhahn, W.; Neese, F. (2008) First principles calculation of Nuclear Resonance Vibrational
Spectra, Hyperfine Interactions, 175, 165–174.
83. DeBeer-George, S.; Petrenko, T.; Aliaga-Alcade, N.; Bill, E.; Mienert, B.; Sturhan, W.; Ming, Y.; Wieghardt,
K.; Neese, F. (2007) Characterization of a Genuine Iron(V)Nitrido Species by Nuclear Resonant Vibrational
Spectroscopy Coupled to Density Functional Calculations, J. Am. Chem. Soc., 129, 11053–11060.
553
84. Roemelt, M.; Beckwith, M. A.; Duboc, C.; Collomb, M.-N.; Neese, F.; DeBeer, S. (2012) Manganese K-Edge
X-Ray Absorption Spectroscopy as a Probe of the Metal-Ligand Interactions in Coordination Compounds,
Inorg. Chem., 51, 680–687.
85. Chandrasekaran, P.; Stieber, S. C. E.; Collins, T. J.; Que, L.; Neese, F.; DeBeer, S. (2011) Prediction of
high-valent iron K-edge absorption spectra by time-dependent Density Functional Theory, Dalton Trans., 40,
11070–11079.
86. Beckwith, M. A.; Roemelt, M.; Collomb, M. N.; Duboc, C.; Weng, T. C.; Bergmann, U.; Glatzel, P.; Neese, F.;
DeBeer, S. (2011) Manganese K beta X-ray Emission Spectroscopy As a Probe of Metal-Ligand Interactions,
Inorg. Chem, 50, 8397–8409.
87. Lee, N.; Petrenko, T.; Bergmann, U.; Neese, F.; DeBeer, S. (2010) Probing Valence Orbital Composition with
Iron K beta X-ray Emission Spectroscopy, J. Am. Chem. Soc., 132, 9715–9727.
88. DeBeer-George, S.; Neese, F. (2010) Calibration of Scalar Relativistic Density Functional Theory for the
Calculation of Sulfur K-Edge X-ray Absorption Spectra, Inorg. Chem, 49, 1849–1853.
89. DeBeer-George, S.; Petrenko, T.; Neese, F. (2008) Prediction of Iron- K-edge Absorption Spectra using
Time-Dependent Density Functional Theory, J. Phys. Chem. A., 112, 12936–12943.
90. DeBeer-George, S.; Petrenko, T.; Neese, F. (2008) Time-dependent density functional calculations of ligand
K-edge X-ray absorption spectra, Inorg. Chim. Acta (60th birthday issue of Prof. E.I. Solomon), 361, 965–972.
91. Grimme, S.; Neese, F. (2007) Double Hybrid Density Functional Theory for Excited States of Molecules, J.
Chem. Phys., 127, 154116.
92. Neese, F.; Schwabe, T.; Grimme, S. (2007) Analytic Derivatives for Perturbatively Corrected ‘Double Hybrid’
Density Functionals, J. Chem. Phys., 126, 124115.
93. Koßmann, S.; Kirchner, B.; Neese, F. (2007) Performance of modern density functional theory for the prediction
of hyperfine structure: meta-GGA and double hybrid functionals, Mol. Phys. (Arthur Schweiger memorial
issue), 105, 2049–2071.
(not originally implemented in ORCA but the ORCA implementation is based on the code described in these papers)
96. Grimme, S.; Antony, J. Ehrlich, S. Krieg, H. (2010) J. Chem. Phys., 132, 154104.
97. Grimme, S.; Ehrlich S.; Goerigk L. (2011) J. Comput. Chem., 32, 1456-1465.
HF-3c method:
COSMO Implementation:
100. Sinnecker, S.; Rajendran, A.; Klamt, A.; Diedenhofen, M.; Neese, F. (2006) Calculation of Solvent Shifts on
Electronic G-Tensors with the Conductor-Like Screening Model (COSMO) and its Self-Consistent Generalization
to Real Solvents (COSMO-RS), J. Phys. Chem. A, 110, 2235–2245.
SOSCF Method:
101. Neese, F. (2000) Approximate Second Order Convergence for Spin Unrestricted Wavefunctions. Chem. Phys.
Lett., 325, 93–98.
102. Pantazis, D. A.; Neese, F. (2012) All-Electron Scalar Relativistic Basis Sets for the 6p Elements, Theor. Chem.
Acc., 131, 1292.
103. Pantazis, D. A.; Neese, F. (2011) All-Electron Scalar Relativistic Basis Sets for the Actinides, J. Chem. Theory
Comput., 7, 677–684.
104. Pantazis, D. A.; Neese, F. (2009) All-Electron Scalar Relativistic Basis Sets for the Lanthanides, J. Chem.
Theory Comput., 5, 2229–2238.
105. Bühl, M.; Reimann, C.; Pantazis, D. A.; Bredow, T.; Neese, F. (2008) Geometries of Third-row Transition-Metal
Complexes from Density-Functional Theory J. Chem. Theory Comput., 4, 1449–1459.
106. Pantazis, D. A.; Chen, X.-Y.; Landis, C.R.; Neese, F. (2008) All Electron Scalar Relativistic Basis Sets for
Third Row Transition Metal Atoms. J. Chem. Theory Comput., 4, 908–919.
107. Sundararajan, M.; Neese, F. (2012) Detailed QM/MM study of the Electron Paramagnetic Resonance
Parameters of Nitrosyl Myoglobin, J. Chem. Theory Comput., 8, 563–574.
108. Riplinger, C.; Neese, F. (2011) The reaction mechanism of Cytochrome P450 NO Reductase: A Detailed
Quantum Mechanics/Molecular Mechanics Study, ChemPhysChem, 12, 3192–3203.
109. Radoul, M.; Sundararajan, M.; Potapov, A.; Riplinger, C.; Neese, F.; Goldfarb, D. (2010) Revisiting the
nitrosyl complex of myoglobin by high-field pulse EPR spectroscopy and quantum mechanical calculations,
Phys. Chem. Chem. Phys., 12, 7276–7289.
110. Sundararajan, M.; Riplinger, C.; Orio, M.; Wennmohs, F.; Neese, F. (2009) Spectroscopic Properties of
Protein-Bound Cofactors: Calculation by Combined Quantum Mechanical/Molecular Mechanical (QM/MM)
Approaches, Encyc. Inorg. Chem., DOI: 10.1002/9781119951438.eibc0371.
111. Altun, A.; Kumar, D.; Neese, F.; Thiel, W. (2008) Multi-reference Ab Initio QM/MM Study on Intermediates
in the Catalytic Cycle of Cytochrome P450cam, J. Phys. Chem., 112, 12904–12910.
555
112. Chalupský, J.; Neese, F.; Solomon, E.I.; Ryde, U.; Rulı́šek, L. (2006) Identification of intermediates in the
reaction cycle of multicopper oxidases by quantum chemical calculations of spectroscopic parameters, Inorg.
Chem., 45, 11051–11059.
113. Sinnecker, S.; Neese, F. (2006) QM/MM Calculations with DFT for Taking into Account Protein Effects on
the EPR and Optical Spectra of Metalloproteins. Plastocyanin as a Case Study. J. Comp. Chem. (Special
issue on Theoretical Bioinorganic Chemistry), 27, 1463–1475.
114. Wanko, M.; Hoffmann, M.; Strodel, P.; Thiel, W.; Neese, F.; Frauenheim, T.; Elstner, M. (2005) Calculating
Absorption Shifts for Retinal Proteins: Computational Challenges J. Phys. Chem. B, 109, 3606–3615.
115. Schöneboom, J.; Neese, F.; Thiel, W. (2005) Towards Identification of the Compound I Reactive Intermediate
in Cytochrome P450 Chemistry: A QM/MM Study of its EPR and Mössbauer Parameters, J. Am. Chem.
Soc., 127, 5840–5853.
116. Krewald, V.; Neese, F.; Pantazis, D. A. (2013) On the magnetic and spectroscopic properties of high-valent
Mn3 CaO4 cubanes as structural units of natural and artificial water oxidizing catalysts, J. Am. Chem. Soc.,
135, 5726–5739.
117. Kampa, M.; Pandelia, M.-E.; Lubitz, W.; van Gastel, M.; Neese, F. (2013) A Metal-Metal Bond in the
Light-Induced State of [NiFe] Hydrogenases with Relevance to Hydrogen Evolution, J. Am. Chem. Soc., 135,
3915–3925.
118. Pandelia, M.-E.; Bykov, D.; Izsak, R.; Infossi, P.; Giudici-Orticoni, M.-T.; Bill, E.; Neese, F.; Lubitz, W.
(2013) Electronic structure of the unique [4Fe-3S] cluster in O2 -tolerant hydrogenases characterized by Fe-57
Mossbauer and EPR spectroscopy, Proc. Natl. Acad. Sci. USA, 110, 483–488.
119. Atanasov, M.; Surawatanawong, P.; Wieghardt, K.; Neese, F. (2013) A theoretical study of zero-field
splitting in Fe(IV)S6 (S = 1) and Fe(III)S6 (S = 1/2) core complexes, [FeIV (Et2 dtc)3−n (mnt)n ](n−1)− and
[FeIII (Et2 dtc)3−n (mnt)n ]n− (n = 0, 1, 2, 3): The origin of the magnetic anisotropy, Coord. Chem. Rev., 257(1),
27–41.
120. Retegan, M.; Collomb, M.-N.; Neese, F.; Duboc, C. (2013) A combined high-field EPR and quantum chemical
study on a weakly ferromagnetically coupled dinuclear Mn(III) complex. A complete analysis of the EPR
spectrum beyond the strong coupling limit, Phys. Chem. Chem. Phys., 15, 223–234.
121. Zadrozny, J. M.; Atanasov, M.; Bryan, A. M.; Lin, C. Y.; Rekken, B. D.; Power, P. P.; Neese, F.; Long, J. R.
(2013) Slow magnetization dynamics in a series of two-coordinate iron(II) complexes, Chem. Sci., 4, 125–138.
122. Weber, K.; Krämer, T.; Shafaat, H. S.; Weyhermüller, T.; Bill, E.; van Gastel, M.; Neese, F.; Lubitz, W. (2012)
A Functional [NiFe]-Hydrogenase Model Compound That Undergoes Biologically Relevant Reversible Thiolate
Protonation, J. Am. Chem. Soc., 134, 20745–20755.
123. Kampa, M.; Lubitz, W.; van Gastel, M.; Neese, F.; (2012) Computational study of the electronic structure
and magnetic properties of the Ni-C state in [NiFe] hydrogenases including the second coordination sphere, J.
Biol. Inorg. Chem., 17, 1269–1281.
124. Atanasov, M.; Comba, P.; Helmle, S.; Müller, D.; Neese, F. (2012) Zero-Field Splitting in a Series of Structurally
Related Mononuclear NiII -Bispidine Complexes, Inorg. Chem., 51, 12324–12335.
556 8 Publications Related to ORCA
125. Shafaat, H. S.; Weber, K.; Petrenko, T.; Neese, F.; Lubitz, W. (2012) Key Hydride Vibrational Modes in
[NiFe] Hydrogenase Model Compounds Studied by Resonance Raman Spectroscopy and Density Functional
Calculations, Inorg. Chem., 51, 11787–11797.
126. Argirevic, T.; Riplinger, C.; Stubbe, J.; Neese, F.; Bennati, M. (2012) ENDOR Spectroscopy and DFT
Calculations: Evidence for the Hydrogen-Bond Network Within α2 in the PCET of E. coli Ribonucleotide
Reductase, J. Am. Chem. Soc., 134, 17661–17670.
127. Albrecht, C.; Shi, L. L.; Perez, J. M.; van Gastel, M.; Schwieger, S.; Neese, F.; Streubel, R. (2012) Deoxygenation
of Coordinated Oxaphosphiranes: A New Route to P=C Double-Bond Systems, Chem. Eur. J., 18, 9780–9783.
128. Maganas, D.; Krzystek, J.; Ferentinos, E.; Whyte, A. M.; Robertson, N.; Psycharis, V.; Terzis, A.; Neese, F.;
Kyritsis, P. (2012) Investigating Magnetostructural Correlations in the Pseudooctahedral trans-[NiII {(OPPh2 )
(EPPh2 )N}2 (sol)2 ] Complexes (E = S, Se; sol = DMF, THF) by Magnetometry, HFEPR, and ab Initio Quantum
Chemistry, Inorg. Chem., 51, 7218–7231.
129. Ye, S. F.; Neese, F. (2012) How Do Heavier Halide Ligands Affect the Signs and Magnitudes of the Zero-Field
Splittings in Halogenonickel(II) Scorpionate Complexes? A Theoretical Investigation Coupled to Ligand-Field
Analysis, J. Chem. Theory Comput., 8, 2344–2351.
130. Nesterov, V.; Ozbolat-Schon, A.; Schnakenburg, G.; Shi, L. L.; Cangonul, A.; van Gastel, M.; Neese, F.;
Streubel, R. (2012) An Unusal Case of Facile Non-Degenerate P-C Bond Making and Breaking, Chem. Asian
J., 7, 1708–1712.
131. Bykov, D.; Neese, F. (2012) Reductive activation of the heme iron-nitrosyl intermediate in the reaction
mechanism of cytochrome c nitrite reductase: a theoretical study, J. Biol. Inorg. Chem., 17, 741–760.
132. Lancaster, K. M.; Zaballa, M.E.; Sproules, S.; Sundararajan, M.; DeBeer, S.; Richards, J. H.; Vila, A. J.; Neese,
F.; Gray, H. B. (2012) Outer-Sphere Contributions to the Electronic Structure of Type Zero Copper Proteins,
J. Am. Chem. Soc., 134, 8241–8253.
133. Benkhauser-Schunk, C.; Wezisla, B.; Urbahn, K.; Kiehne, U.; Daniels, J.; Schnakenburg, G.; Neese, F.; Lutzen,
A. (2012) Synthesis, Chiral Resolution, and Absolute Configuration of Functionalized Troger’s Base Derivatives:
Part II, ChemPlusChem, 77, 396–403.
134. Ye, S. F.; Riplinger, C.; Hansen, A.; Krebs, C.; Bollinger, J. M.; Neese, F. (2012) Electronic Structure Analysis
of the Oxygen-Activation Mechanism by FeII - and α-Ketoglutarate (αKG)-Dependent Dioxygenases, Chem.
Eur. J., 18, 6555–6567.
135. Desrochers, P. J.; Sutton, C. A.; Abrams, M. L.; Ye, S. F.; Neese, F.; Telser, J.; Ozarowski, A.; Krzystek, J.
(2012) Electronic Structure of Nickel(II) and Zinc(II) Borohydrides from Spectroscopic Measurements and
Computational Modeling, Inorg. Chem., 51, 2793–2805.
136. Torres-Alacan, J.; Krahe, O.; Filippou, A. C.; Neese, F.; Schwarzer, D.; Vöhringer, P. (2012) The Photochem-
istry of [FeIII N3 (cyclam-ac)]PF6 at 266 nm, Chem. Eur. J., 18, 3043–3055.
137. Maekawa, M.; Römelt, M.; Daniliuc, C. G.; Jones, P. G.; White, P. S.; Neese, F.; Walter, M. D. (2012)
Reactivity studies on [Cp0 MnX(thf)]2 : manganese amide and polyhydride synthesis Chem. Sci., 3, 2972–2979.
138. Pantazis, D. A.; Ames, W.; Cox, N.; Lubitz, W.; Neese, F. (2012) Two interconvertible structures that explain
the spectroscopic properties of the oxygen-evolving complex of photosystem II in the S2 state, Angew. Chem.
Int. Ed., 51, 9935–9940. (selected as cover article and VIP paper)
557
139. Vennekate, H.; Schwarzer, D.; Torres-Alacan, J.; Krahe, O.; Filippou, A. C.; Neese, F.; Vöhringer, P. (2012)
Ultrafast primary processes of an iron-(III) azido complex in solution induced with 266 nm light, Phys. Chem.
Chem. Phys., 14, 6165–6172.
140. Christian, G. J.; Ye, S.; Neese, F. (2012) Oxygen activation in extradiol catecholate dioxygenases – a density
functional study, Chem. Sci., 3, 1600–1611.
141. Cowley, R. E.; Christian, G. J.; Brennessel, W. W.; Neese, F.; Holland, P. L. (2012) A Reduced (beta-
Diketiminato)iron Complex with End-On and Side-On Nitriles: Strong Backbonding or Ligand Non-Innocence?
Eur. J. Inorg. Chem., 479–483.
142. Thiessen, A.; Wettach, H.; Meerholz, K.; Neese, F.; Hoger, S.; Hertel, D. (2012) Control of electronic properties
of triphenylene by substitution, Organic Electronics, 13, 71–83.
143. Lancaster, K. M.; Roemelt, M.; Ettenhuber, P.; Hu, Y. L.; Ribbe, M. W.; Neese, F.; Bergmann, U.; DeBeer,
S. (2011) X-ray Emission Spectroscopy Evidences a Central Carbon in the Nitrogenase Iron-Molybdenum
Cofactor, Science, 334, 974–977.
144. Ames, W.; Pantazis, D. A.; Krewald, V.; Cox, N.; Messinger, J.; Lubitz, W.; Neese, F. (2011) Theoretical
Evaluation of Structural Models of the S2 State in the Oxygen Evolving Complex of Photosystem II: Protonation
States and Magnetic Interactions, J. Am. Chem. Soc., 133, 19743–19757.
145. Antony, J.; Grimme, S.; Liakos, D. G.; Neese, F. (2011) Protein-Ligand Interaction Energies with Dispersion
Corrected Density Functional Theory and High-Level Wave Function Based Methods, J. Phys. Chem. A, 115,
11210–11220.
146. Radoul, M.; Bykov, D.; Rinaldo, S.; Cutruzzola, F.; Neese, F.; Goldfarb, D. (2011) Dynamic Hydrogen-Bonding
Network in the Distal Pocket of the Nitrosyl Complex of Pseudomonas aeruginosa cd(1) Nitrite Reductase, J.
Am. Chem. Soc., 133, 3043–3055.
147. Liakos, D. G.; Neese, F. (2011) Interplay of Correlation and Relativistic Effects in Correlated Calculations on
Transition-Metal Complexes: The Cu2 O2+ 2 Core Revisited, J. Chem. Theory Comput., 7, 1511–1523.
148. Riplinger, C.; Neese, F. (2011) The Reaction Mechanism of Cytochrome P450 NO Reductase: A Detailed
Quantum Mechanics/Molecular Mechanics Study, ChemPhysChem, 12, 3192–3203.
149. Maganas, D.; Sottini, S.; Kyritsis, P.; Groenen, E. J. J.; Neese, F. (2011) Theoretical Analysis of the Spin
Hamiltonian Parameters in CoII S4 Complexes, Using Density Functional Theory and Correlated ab initio
Methods, Inorg. Chem, 50, 8741–8754.
150. Surawatanawong, P.; Sproules, S.; Neese, F.; Wieghardt, K. (2011) Electronic Structures and Spectroscopy of
the Electron Transfer Series Fe(NO)Lz2 (z = 1+, 0, 1−, 2−, 3−; L = Dithiolene), Inorg. Chem, 50, 12064–12074.
151. Cox, N.; Ames, W.; Epel, B.; Kulik, L. V.; Rapatskiy, L.; Neese, F.; Messinger, J.; Wieghardt, K.; Lubitz,
W. (2011) Electronic Structure of a Weakly Antiferromagnetically Coupled Mn(II)Mn(III) Model Relevant to
Manganese Proteins: A Combined EPR, 55 Mn-ENDOR, and DFT Study, Inorg. Chem, 50, 8238–8251.
152. Rota, J. B.; Knecht, S.; Fleig, T.; Ganyushin, D.; Saue, T.; Neese, F.; Bolvin, H. (2011) Zero field splitting of
the chalcogen diatomics using relativistic correlated wave-function methods, J. Chem. Phys., 135, 114106.
153. Atanasov, M.; Ganyushin, D.; Pantazis, D. A.; Sivalingam, K.; Neese, F. (2011) Detailed Ab Initio First-
Principles Study of the Magnetic Anisotropy in a Family of Trigonal Pyramidal Iron(II) Pyrrolide Complexes,
Inorg. Chem, 50, 7460–7477.
558 8 Publications Related to ORCA
154. Cox, N.; Rapatskiy, L.; Su, J. H.; Pantazis, D. A.; Sugiura, M.; Kulik, L.; Dorlet, P.; Rutherford, A. W.; Neese,
F.; Boussac, A.; Lubitz, W.; Messinger, J. (2011) Effect of Ca2+ /Sr2+ Substitution on the Electronic Structure
of the Oxygen-Evolving Complex of Photosystem II: A Combined Multifrequency EPR, 55 Mn-ENDOR, and
DFT Study of the S2 State, J. Am. Chem. Soc., 133, 3635–3648.
155. Maurice, R.; Sivalingam, K.; Ganyushin, D.; Guihery, N.; de Graaf, C.; Neese, F. (2011) Theoretical
Determination of the Zero-Field Splitting in Copper Acetate Monohydrate, Inorg. Chem, 50, 6229–6236.
156. Su, J. H.; Cox, N.; Ames, W.; Pantazis, D. A.; Rapatskiy, L.; Lohmiller, T.; Kulik, L. V.; Dorlet, P.; Rutherford,
A. W.; Neese, F.; Boussac, A.; Lubitz, W.; Messinger, J. (2011) The electronic structures of the S2 states of
the oxygen-evolving complexes of photosystem II in plants and cyanobacteria in the presence and absence of
methanol, Biochim. Biophys. Acta-Bioenergetics, 1807, 829–840.
157. Bykov, D.; Neese, F. (2011) Substrate binding and activation in the active site of cytochrome c nitrite reductase:
a density functional study, J. Biol. Inorg. Chem, 16, 417–430.
158. Gennari, M.; Orio, M.; Pecaut, J.; Bothe, E.; Neese, F.; Collomb, M. N.; Duboc, C. (2011) Influence of
Mixed Thiolate/Thioether versus Dithiolate Coordination on the Accessibility of the Uncommon +I and +III
Oxidation States for the Nickel Ion: An Experimental and Computational Study, Inorg. Chem, 50, 3707–3716.
159. Ye, S. F.; Neese, F. (2011) Nonheme oxo-iron(IV) intermediates form an oxyl radical upon approaching the
C-H bond activation transition state, Proc. Natl. Acad. Sci. USA, 108, 1228–1233.
160. Gennari, M.; Pecaut, J.; DeBeer, S.; Neese, F.; Collomb, M. N.; Duboc, C. (2011) A Fully Delocalized
Mixed-Valence Bis-µ-(Thiolato) Dicopper Complex: A Structural and Functional Model of the Biological Cu(A)
Center, Angew. Chem., Int. Ed., 50, 5661–5665.
161. Gennari, M.; Retegan, M.; DeBeer, S.; Pecaut, J.; Neese, F.; Collomb, M. N.; Duboc, C. (2011) Experimental
and Computational Investigation of Thiolate Alkylation in Ni(II) and Zn(II) Complexes: Role of the Metal on
the Sulfur Nucleophilicity, Inorg. Chem, 50, 10047–10055.
162. Atanasov, M.; Delley, B.; Neese, F.; Tregenna-Piggott, P. L.; Sigrist, M. (2011) Theoretical Insights into the
Magnetostructural Correlations in Mn(3)-Based Single-Molecule Magnets, Inorg. Chem, 50, 2112–2124.
163. Neese, F.; Pantazis, D. A. (2011) What is not required to make a single molecule magnet, Faraday Discussions,
148, 229–238.
164. Lassalle-Kaiser, B.; Hureau, C.; Pantazis, D. A.; Pushkar, Y.; Guillot, R.; Yachandra, V. K.; Yano, J.; Neese,
F.; Anxolabéhère-Mallart, E. (2010) Activation of a water molecule using a mononuclear Mn complex: from
Mn-aquo, to Mn-hydroxo, to Mn-oxyl via charge compensation, Energy Environ. Sci., 3, 924–938.
165. Pantazis, D. A.; Krewald, V.; Orio, M.; Neese, F. (2010) Theoretical magnetochemistry of dinuclear manganese
complexes: broken symmetry density functional theory investigation on the influence of bridging motifs on
structure and magnetism, Dalton Trans., 39, 4959–4967.
166. Woertink, J. S.; Tian, L.; Maiti, D.; Lucas, H. R.; Himes, R. A.; Karlin, K. D.; Neese, F.; Wurtele, C.; Holthausen,
M. C.; Bill, E.; Sundermeyer, J.; Schindler, S.; Solomon, E. I. (2010) Spectroscopic and Computational Studies
of an End-on Bound Superoxo-Cu(II) Complex: Geometric and Electronic Factors That Determine the Ground
State, Inorg. Chem, 49, 9450–9459.
167. McNaughton, R. L.; Roemelt, M.; Chin, J. M.; Schrock, R. R.; Neese, F.; Hoffman, B. M. (2010) Experimental
and Theoretical EPR Study of Jahn–Teller-Active HIPTN(3)N MoL Complexes (L = N2 , CO, NH3 ), J. Am.
Chem. Soc., 132, 8645–8656.
559
168. Geng, C. Y.; Ye, S. F.; Neese, F. (2010) Analysis of Reaction Channels for Alkane Hydroxylation by Nonheme
Iron(IV)-Oxo Complexes, Angew. Chem., Int. Ed., 49, 5717–5720.
169. Orio, M.; Jarjayes, O.; Kanso, H.; Philouze, C.; Neese, F.; Thomas, F. (2010) X-Ray Structures of Copper(II)
and Nickel(II) Radical Salen Complexes: The Preference of Galactose Oxidase for Copper(II), Angew. Chem.,
Int. Ed., 49, 4989–4992.
170. Gennari, M.; Orio, M.; Pecaut, J.; Neese, F.; Collomb, M. N.; Duboc, C. (2010) Reversible Apical Coordination
of Imidazole between the Ni(III) and Ni(II) Oxidation States of a Dithiolate Complex: A Process Related to
the Ni Superoxide Dismutase, Inorg. Chem, 49, 6399–6401.
171. Ye, S. F.; Price, J. C.; Barr, E. W.; Green, M. T.; Bollinger, J. M.; Krebs, C.; Neese, F. (2010) Cryoreduction
of the NO-Adduct of Taurine:alpha-Ketoglutarate Dioxygenase (TauD) Yields an Elusive {FeNO}8 Species, J.
Am. Chem. Soc., 132, 4739–4751.
172. Maganas, D.; Grigoropoulos, A.; Staniland, S. S.; Chatziefthimiou, S. D.; Harrison, A.; Robertson, N.;
Kyritsis, P.; Neese, F. (2010) Tetrahedral and Square Planar Ni(SPR2 )2 N2 complexes, R = Ph & iPr
Revisited: Experimental and Theoretical Analysis of Interconversion Pathways, Structural Preferences, and
Spin Delocalization, Inorg. Chem, 49, 5079–5093.
173. Anoop, A.; Thiel, W.; Neese, F. (2010) A Local Pair Natural Orbital Coupled Cluster Study of Rh Catalyzed
Asymmetric Olefin Hydrogenation, J. Chem. Theory Comput., 6, 3137–3144.
174. Duboc, C.; Collomb, M. N.; Neese, F. (2010) Understanding the Zero-Field Splitting of Mononuclear Man-
ganese(II) Complexes from Combined EPR Spectroscopy and Quantum Chemistry, Appl. Magn. Res., 37,
229–245.
175. Ye, S. F.; Neese, F. (2010) The Unusual Electronic Structure of Dinitrosyl Iron Complexes, J. Am. Chem.
Soc., 132, 3646–3647.
176. Kochem, A.; Orio, M.; Jarjayes, O.; Neese, F.; Thomas, F. (2010) Unsymmetrical one-electron oxidized
Ni(II)-bis(salicylidene) complexes: a protonation-induced shift of the oxidation site, Chem. Commun., 46,
6765–6767.
177. Ozbolat-Schon, A.; Bode, M.; Schnakenburg, G.; Anoop, A.; van Gastel, M.; Neese, F.; Streubel, R. (2010)
Insights into the Chemistry of Transient P-Chlorophosphanyl Complexes, Angew. Chem., Int. Ed., 49,
6894–6898.
178. Vancoillie, S.; Chalupsky, J.; Ryde, U.; Solomon, E. I.; Pierloot, K.; Neese, F.; Rulisek, L. (2010) Multireference
Ab Initio Calculations of g tensors for Trinuclear Copper Clusters in Multicopper Oxidases, J. Phys. Chem. B,
114, 7692–7702.
179. Grote, D.; Finke, C.; Kossmann, S.; Neese, F.; Sander, W. (2010) 3,4,5,6-Tetrafluorophenylnitren-2-yl: A
Ground-State Quartet Triradical, Chem. Eur. J., 16, 4496–4506.
180. Ye, S. F.; Neese, F.; Ozarowski, A.; Smirnov, D.; Krzystek, J.; Telser, J.; Liao, J. H.; Hung, C. H.; Chu, W. C.;
Tsai, Y. F.; Wang, R. C.; Chen, K. Y.; Hsu, H. F. (2010) Family of V(III)-Tristhiolato Complexes Relevant to
Functional Models of Vanadium Nitrogenase: Synthesis and Electronic Structure Investigations by Means of
High-Frequency and -Field Electron Paramagnetic Resonance Coupled to Quantum Chemical Computations,
Inorg. Chem, 49, 977–988.
181. Hegele, P.; Santhamma, B.; Schnakenburg, G.; Frohlich, R.; Kataeva, O.; Nieger, M.; Kotsis, K.; Neese, F.;
Dotz, K. H. (2010) Hydroquinoid Chromium Complexes Bearing an Acyclic Conjugated Bridge: Chromium-
Templated Synthesis, Molecular Structure, and Haptotropic Metal Migration, Organometallics, 29, 6172–6185.
560 8 Publications Related to ORCA
182. Ye, S. F.; Neese, F. (2010) Accurate Modeling of Spin-State Energetics in Spin-Crossover Systems with Modern
Density Functional Theory, Inorg. Chem, 49, 772–774.
183. Orio, M.; Philouze, C.; Jarjayes, O.; Neese, F.; Thomas, F. (2010) Spin Interaction in Octahedral Zinc
Complexes of Mono- and Diradical Schiff and Mannich Bases, Inorg. Chem, 49, 646–658.
184. Pantazis, D. A.; Orio, M.; Petrenko, T.; Zein, S.; Lubitz, W.; Messinger, J.; Neese, F. (2009) Structure of
the Oxygen-Evolving Complex of Photosystem II: Information on the S2 state through Quantum Chemical
Calculation of its Magnetic Properties. Phys. Chem. Chem. Phys., 11, 6788–6798.
185. Baffert, C.; Orio, M.; Pantazis, D. A.; Duboc, C.; Blackman, A.G.; Blondin, G.; Neese, F.; Deronzier,A.;
Collomb, M-N. (2009) A trinuclear terpyridine frustrated spin system with a MnIV
3 O4 core: synthesis, physical
characterization and quantum chemical modeling of its magnetic properties. Inorg. Chem., 48, 10281–10288.
186. Liakos, D.; Neese, F. (2009) A multiconfigurational ab initio study of the zero-field splitting in the di- and
trivalent hexaquo-chromium complexes. Inorg. Chem., 48, 10572–10580.
187. Astashkin, A.V.; Klein, E.C.; Ganyushin, D.; Johnson.Winters, K.; Neese, F.; Kappler, U.; Enemark, J.H.
(2009) Exchangeable oxygens in the vicinity of the molybdenum center of the high-pH form of sulfite oxidase
and sulfite dehydrogenase. Phys. Chem. Chem. Phys., 11, 6733–6742.
188. Orio, M.; Pantazis, D. A.; Petrenko, T.; Neese, F. (2009) Magnetic and spectroscopic properties of mixed
valence manganese(III,IV) dimers: a systematic study using broken symmetry density functional theory, Inorg.
Chem., 48, 7251–7260.
189. Klein, E.L.; Astashkin, A.V.; Ganyushin, D.; Johnson-Winters, K.; Wilson, H.L.; Rajagopalan, K. V.; Neese,
F.; Enemark, J.H. (2009) Direct Detection and Characterization of Chloride in the Active Site of the Low-pH
Form of Sulfite Oxidase Using ESEEM Spectroscopy, Isotopic Labeling, and DFT Calculations, Inorg. Chem.,
48(11), 4743–4752.
190. Vancoillie, S.; Rulisek, L.; Neese, F.; Pierloot, K. (2009) Theoretical description of the structure and magnetic
properties of nitroxide-Cu(II)-nitroxide spin triads, J. Phys. Chem., 113, 6149–6157.
191. Cowley, R.E.; Bill, E.; Neese, F.; Brennessel,W.W.; Holland, P.L. (2009) Iron(II) Complexes With Redox-Active
Tetrazene (RNNNNR) Ligands, Inorg. Chem., 48, 4828–4836.
192. Gansäuer, A.; Fleckhaus, A.; Lafon, A.; Okkel, M.; Anakuthil, A.; Kotsis, K.; Neese, F. (2009) Catalysis via
Homolytic Substitutions with C-O and Ti-O Bonds: Oxidative Additions and Reductive Eliminations in Single
Electron Steps. J. Am. Chem. Soc., 131, 16989–16999.
193. Ye, S.; Neese, F. (2009) Quantum Chemical Studies of C-H Activation Reactions by High-Valent Nonheme
Iron Centers Curr. Op. Chem. Biol., 13(1), 89–98.
194. Krahe, O.; Neese, F.; Streubel, R. (2009) The quest for ring-opening of oxaphosphirane complexes: a coupled
cluster and density functional study of CH3 PO isomers and their Cr(CO)5 complexes Chem. Eur. J., 15,
2594–2601.
195. Romain, S.; Duboc, C.; Neese, F.; Riviere, E.; Hanton, L. R.; Blackman, A. G.; Philouze, C.; Lepretre, J.
C.; Deronzier, A.; Collomb, M. N. (2009) An Unusual Stable Mononuclear Mn(III) Bis-terpyridine Complex
Exhibiting Jahn-Teller Compression: Electrochemical Synthesis, Physical Characterisation and Theoretical
Study, Chem. Eur. J., 15, 980–988
196. Zein, S.; Neese, F. (2008) Ab initio and Coupled Perturbed DFT Calculation of Zero-Field Splittings in Mn(II)
Transition Metal complexes. J. Phys. Chem. A, 112, 7976–7983.
561
197. Ye, S.; Tuttle, T.; Bill, E.; Gross, Z.; Thiel, W.; Neese, F. (2008) The Noninnocence of Iron Corroles: A
combined Experimental and Quantum Chemical Study. Chem. Eur. J. (selected as very important paper), 34,
10839–10851.
198. Duboc, C.; Collomb, M.-N.; Pecaut, J.; Deronzier, A.; Neese, F. (2008) Definition of Magneto-Structural
Correlations for the Mn(II) Ion. Chem. Eur. J., 21, 6498–6509.
199. Berry, J.F.; DeBeer-George, S.; Neese, F. (2008) Electronic Structure and Spectroscopy of “Superoxidized” Iron
Centers in Model Systems: Theoretical and Experimental Trends. Phys. Chem. Chem. Phys., 10, 4361–4374.
200. Sander, W.; Grote, D.; Kossmann, S.; Neese, F. (2008) 2.3.5.6-Tetrafluorophenylnitren-4-yl: EPR Spectroscopic
Characterization of a Quartet Ground State Nitreno Radical, J. Am. Chem. Soc., 130, 4396–4403.
201. Scheifele, Q.; Riplinger, C.; Neese, F.; Weihe, H.; Barra, A.L.; Jurany, F.; Podlesnyak, A.; Tregenna-Piggot,
P.W.L. (2008) Spectroscopic and Theoretical Study of a Mononuclear Mn(III) Bioinorganic Complex Exhibiting
a Compressed Jahn-Teller Octahedron, Inorg. Chem., 47, 439–447.
202. Zein, S.; Kulik, L.V.; Yano, J.; Kern, J.; Zouni, A.; Yachandra, V.K.; Lubitz, W.; Neese, F.; Messinger,
J. (2008) Focussing the View on Nature’s Water Splitting Catalyst Phil. Trans. Roy. Soc. London B, 363,
1167–1177.
203. Zein, S.; Duboc, C.; Lubitz, W.; Neese, F. (2008) Theoretical Characterization of zero-Field Splittings in
Mn(II) Complexes. Inorg. Chem., 47, 134–142.
204. Parker, D.J.; Hammond, D.; Davies, E.S.; Garner, C.D.; Benisvy, L.; McMaster, J.; Wilson, C.; Neese, F.;
Bothe, E.; Bittl, R.; Teutloff, C. (2007) A stable H-bonded ortho-Thioether Phenoxyl-Radical: A Chemical
and Spectroscopic Analogue of • Tyr272 in apo-Galactose Oxidase, J. Biol. Inorg. Chem. (Ed Stiefel memorial
issue), 101, 1859–1864.
205. Chlopek, K.; Muresan, N.; Neese, F.; Wieghardt, K. (2007) Electronic Structures of Five-Coordinate Complexes
of Iron Containing Zero, One, or Two π Radical Ligands: A Broken Symmetry Density Functional Theoretical
Study, Chem. Eur. J., 13, 8391–8403.
206. Muresan, N.; Chlopek, K.; Weyhermüller, T.; Neese, F.; Wieghardt, K. (2007) Bis(α-diimine)nickel Complexes:
Molecular and Electronic Structure of Three Members of the Electron-Transfer Series [Ni(L)2 ]z (z = 0, 1+, 2+)
(L = 2-Phenyl-1,4-bis(isopropyl)-1,4-diazabutadiene). A Combined Experimental and Theoretical Study, Inorg.
Chem., 46, 4905–4916.
207. Ray, K.; Petrenko, T.; Wieghardt, K.; Neese, F. (2007) Joint Spectroscopic and Theoretical Investigations of
Transition Metal Complexes Involving Non-Innocent Ligands. Dalton Trans., 1552 (selected for cover picture).
208. Sinnecker, S.; Svensen, N.; Barr, E.W.; Ye, S.; Bollinger, J.M.; Neese, F.; Krebs, C. (2007) Spectroscopic and
Theoretical Evaluation of the Structure of the High-Spin Fe(IV)-Oxo Intermediates in Taurine:α-Ketoglutarate
Dioxygenase from Escherichia coli and its His99Ala Ligand Variant J. Am. Chem. Soc., 129, 6168–6179.
209. Duboc, C.; Phoeung, T; Zein, S.; Pécaut, J.; Collomb, M.-N.; Neese. F. (2007) Origin of the zero field splitting
in mononuclear dihalide Mn(II) complexes: an investigation by multifrequency high-field EPR and density
functional theory (DFT), Inorg. Chem., 46, 4905–4916.
210. DeBeer-George, S.; Petrenko, T.; Aliaga-Alcade, N.; Bill, E.; Mienert, B.; Sturhan, W.; Ming, Y.; Wieghardt,
K.; Neese, F. (2007) Characterization of a Genuine Iron(V)Nitrido Species by Nuclear Resonant Vibrational
Spectroscopy Coupled to Density Functional Calculations, J. Am. Chem. Soc., 129, 11053–11060.
562 8 Publications Related to ORCA
211. Lehnert, N.M; Cornelissen, U.; Neese, F.; Ono, T.; Noguchi, Y.; Okamoto, K.-I.; Fujisawa, K. (2007) Synthesis
and Spectroscopic Characterization of Cu(II)-Nitrite Complexes with Hydrotris(pyrazolyl)borate and Related
Ligands. Inorg. Chem., 46, 3916–3933.
212. Carmieli, R.; Larsen, T.; Reed, G.H.; Zein, S.; Neese, F.; Goldfarb, D. (2007) The Catalytic Mn2+ Sites in the
Enolase-Inhibitor Complex - Crystallography, Single Crystal EPR and DFT calculations. J. Am. Chem. Soc.,
129, 4240–4252.
213. Kokatam, S.; Ray, K.; Pap, J.; Bill, E.; Geiger, W.E.; LeSuer, R.J.; Rieger, P.H.; Weyhermüller, T.; Neese, F.;
Wieghardt, K. (2007) Molecular and Electronic Structure of Square Planar Gold Complexes Containing Two
1,2-di(4-tert-butylphenyl)ethylene-1,2-dithiolato Ligands: [Au(L)2 ]1+/0/1−/2− . A Combined Experimental and
Computational Study, Inorg. Chem., 46, 1100–1111.
214. Ray, K.; DeBeer-George, S.; Solomon, E.I.; Wieghardt, K.; Neese, F. (2007) Description of the Ground
State Covalencies of the Bis(dithiolato)Transition Metal Complexes Using X-ray Absorption Spectral and
Time-Dependent-Density-Functional Studies. Chem. Eur. Journal, 13(10), 2753 (selected for cover picture).
215. Chalupský, J.; Neese, F.; Solomon, E.I.; Ryde, U.; Rulı́šek, L. (2006) Identification of intermediates in the
reaction cycle of multicopper oxidases by quantum chemical calculations of spectroscopic parameters, Inorg.
Chem., 45, 11051–11059.
216. Bart, S.C.; Chlopek, K.; Bill, E., Bouwkamp, B.W.; Lobkovsky, E.; Neese, F.; Wieghardt, K.; Chirik, P.J.
(2006) Electronic Structure of Bis(imino)pyridine Iron Dichloride, Monochloride and Neutral Ligand Complexes:
A Combined Structural, Spectroscopic and Computational Study, J. Am. Chem. Soc., 128, 13901–13912.
217. Patra, A.K.; Bill, E.; Bothe, E.; Chlopek, K.; Neese, F.; Weyhermüller, T.; Stobie, K.; Ward, M.D.; McCleverty,
J.A.; Wieghardt, K. (2006) The Electronic Structure of Mononuclear Bis(1,2-diaryl-1,2-ethylenedithiolate)iron
Complexes Containing a Fifth Cyanide or Phosphite Ligand: A Combined Experimental and Computational
Study, Inorg. Chem., 45, 7877–7890.
218. Berry, J.F.; Bill, E.; Bothe, E.; DeBeer-George, S.; Mienert, B.; Neese, F.; Wieghardt, K. (2006) An Octahedral
Coordination Complex of Iron(VI) – One Step Ahead of Nature?, Science, 312, 1937–1941.
219. Petrenko, T.; Ray, K.; Wieghardt, K.; Neese, F. (2006) Vibrational Markers for the Open-Shell Character of
Metal bis-Dithiolenes: An Infrared, resonance Raman and Quantum Chemical Study. J. Am. Chem. Soc., 128,
4422–4436.
220. Chlopek, K.; Bothe, E.; Neese, F.; Weyhermüller, T.; Wieghardt, K. (2006) The Molecular and Elec-
tronic Structures of Tetrahedral Complexes of Nickel and Cobalt Containing N, N 0 -Disubstituted, Bulky
o-Diiminobenzosemiquinonate(1-) π-Radical Ligands, Inorg. Chem., 45, 6298–6307.
221. Kababya, S.; Nelson. J.; Calle, C.; Neese, F.; Goldfarb, D. (2006) The electronic structure of bi-nuclear mixed
valent copper azacryptates derived from integrated advanced EPR and DFT calculations. J. Am. Chem. Soc.,
128, 2017–2029.
222. Berry, J.F.; Bill, E.; Neese, F.; Garcia-Serres, R.; Weyhermüller, T.; Wieghardt, K. (2006) Effect of N-
Methylation of Macrocyclic Amine Ligands on the Spin State of Fe(III): A Tale of Two Fluoro Complexes.
Inorg. Chem., 45, 2027–2037.
223. Kapre, R.; Ray, K.; Sylvestre, I.; Weyhermüller, T.; DeBeer-George, S.; Neese, F.; Wieghardt, K. (2006) The
Molecular and Electronic Structure of Oxo-bis(benzene-1,2-dithiolato)chromate(V) Monoanions. A Combined
Experimental and Density Functional Study. Inorg. Chem., 45, 3499–3509.
563
224. Zhu, W.; Marr, A.C.; Wang, Q.; Neese, F.; Spencer, J.E.; Blake, A.J.; Cooke, P.A.; Wilson, C.; Schröder,
M. (2005) Modulation of the Electronic Structure and the Ni-Fe Distance in Heterobimetallic Models for the
Active Site in [NiFe]Hydrogenase: Is there a Ni-Fe Bond? Proc. Natl. Acad. Sci. (USA), 102, 18280–18285.
225. Astashkin, A.V.; Neese, F.; Raitsimaring, A.M.; Cooney, J.J.A.; Bultman, E.; Enemark, J.H. (2005) Pulsed
EPR investigation of systems modelling molybdenum enzymes: hyperfine and quadrupole parameters of oxo-17 O
in [Mo17 O(SPh)4 ]− , J. Am. Chem. Soc., 127, 16713–16722.
226. Benisvy, L.; Bittl, R.; Bothe, E.; Garner, C.D.; McMaster, J.; Ross, S.; Teutloff, C.; Neese, F. (2005) Phenoxyl
Radicals Hydrogen-Bonded to Imidazolium – Analogues of Tyrosyl D• of Photosystem II: High-Field EPR and
DFT Studies. Angew. Chem. Int. Ed., 44, 5314–5317.
227. Praneeth, V.K.K.; Neese, F.; Lehnert, N. (2005) Spin Density Distribution in Five- and Six-Coordinate
Iron(II)-Porphyrin NO Complexes Evidenced by Magnetic Circular Dichroism Spectroscopy. Inorg. Chem., 44,
2570–2572.
228. Sinnecker, S.; Neese, F.; Lubitz, W. (2005) Dimanganese Catalase – Spectroscopic Parameters from Broken
Symmetry Density Functional Theory of the Superoxidized MnIII /MnIV state, J. Biol. Inorg. Chem., 10,
231–238.
229. Blanchard, S.; Neese, F.; Bothe, E.; Bill, E.; Weyhermüller, T.; Wieghardt, K. (2005) Square Planar vs.
Tetrahedral Coordination in Diamagnetic Complexes of Nickel(II) Containing Two Bidentate π Radical
Monoanions, Inorg. Chem., 44, 3636–3656.
230. Mader-Cosper, M.; Neese, F.; Astashkin, A.V.; Carducci, M.A.; Raitsimring, A.M.; Enemark, J.H. (2005)
Determination of the Magnitude and Orientation of the g-Tensors for cis,trans-(L-N2 S2 )MoV OX (X=Cl,
SCH2 Ph) by Single Crystal EPR and Molecular Orbital Calculations, Inorg. Chem., 44, 1290–1301.
231. Fouqeau, A.; Casida, M.E.; Lawson, L.M.; Hauser, A.; Neese, F. (2005) Comparison of Density Functionals for
Energy and Structural Differences Between the High-[5 T2g : (t42g )(e2g )] and Low-[1 A1g : (t62g )(e0g )] Spin States of
Iron(II) Coordination Compounds: II. Comparison of Results for More than Ten Modern Functionals with
Ligand Field Theory and Ab Initio Results for Hexaquoferrous Dication, [Fe(H2 O)6 ]2+ and Hexaminoferrous
Dication [Fe(NH3 )6 ]2+ , J. Chem. Phys., 122, 044110.
232. Aliaga-Alcade, N.; DeBeer George, S.; Bill, E.; Wieghardt, K.; Neese, F. (2005) The Geometric and Electronic
Structure of [(Cyclam-acetato)Fe(N)]+: a Genuine Iron(V) Species with Ground State Spin S = 1/2. Angew.
Chem. Int. Ed., 44, 2908–2912.
233. Bill, E.; Bothe, E.; Chaudhuri, P.; Chlopek, K.; Herebian, D.; Kokatam, S.; Ray, K. Weyhermüller, T.; Neese,
F.; Wieghardt, K. (2004) Molecular and Electronic Structure of Four- and Five-Coordinate Cobalt Complexes
Containing Two o-Phenylendiamine- or Two o-Aminophenol-Type Ligands at Various Oxidation Levels: An
Experimental, Density Functional and Correlated ab initio Study. Chem. Eur. J., 11, 204–224.
234. Paine, T.; Bothe, W.; Bill, E.; Weyhermüller, T.; Slep, L.; Neese, F.; Chaudhuri, P. (2004) Nonoxo Vana-
dium(IV) and Vanadyl(V) Complexes with Mixed O,X,O-Donor Ligand (X = S, Se, P, PO), Inorg. Chem., 43,
7324–7338.
235. Baute, D.; Arieli, D.; Zimmermann, H.; Neese, F.; Weckhuysen, B.; Goldfarb, D. (2004) The Structure of
Copper Histidine Complexes in Solution and in Zeolite Y: A Combined X- and W-Band Pulsed EPR/ENDOR
and DFT Study, J. Am. Chem. Soc., 126, 11733–11745.
236. Garcia Serres R.; Grapperhaus, C.A.; Bothe, E.; Bill, E.; Weyhermüller, T.; Neese, F.; Wieghardt, K.
(2004) Structural, Spectroscopic and Computational Study of an Octahedral, Non-heme {FeNO}6,7,8 Series:
[Fe(NO)(cyclam-ac)]2+/1+/0 , J. Am. Chem. Soc., 126, 5138–5153.
564 8 Publications Related to ORCA
237. Sinnecker, S.; Noodleman, L.; Neese, F.; Lubitz, W. (2004) Calculation of the EPR Parameters of a Mixed
Valence Mn(III)/Mn(IV) Model Complex with Broken Symmetry Density Functional Theory. J. Am. Chem.
Soc., 126, 2613–2622.
238. Sinnecker, S.; Neese, F.; Lubitz, W. (2004) Benzosemichinone Solvent Interactions. A Density Functional
Study of Electric and Magnetic Properties for Probing Hydrogen Bond Strengths and Geometries. J. Am.
Chem. Soc., 126, 3280–3290.
239. van Gastel, M.; Fichtner, C.; Neese, F.; Lubitz, W. (2005) EPR Experiments to Elucidate the Structure of
the Ready and Unready States of the [NiFe] Hydrogenase of Desulfovibrio vulgaris Miyazaki F. Biochem. Soc.
Trans., 33, 7–11.
240. van Gastel, M.; Lassman, G.; Lubitz, W.; Neese, F. (2004) The unusual EPR parameters of the cysteine
radical: a DFT and correlated ab initio study J. Am. Chem. Soc., 126, 2237–2246.
241. Fouqueau, A.; Mer, S.; Casida, M.E.; Daku, L.M.L.; Hauser, A.; Mieva, T.; Neese, F. (2004) Comparison of
Density Functionals for Energy and Structural Differences between the High [5 T2g : t42g e2g ] and Low [1 A1g : t62g ]
Spin States of the Hexaquo-Ferrous Ion, [Fe(H2 O)6 ]2+ , J. Chem. Phys., 120, 9473–9486.
242. Slep, L.D.; Mijovilovich, A.; Meyer-Klaucke, W.; Weyhermüller, T.; Bill, E.; Bothe, E.; Neese, F.; Wieghardt,
K. (2003) The Mixed-valent {FeIV (µ-O)(µ-carboxylato)2 FeIII }3+ Core. J. Am. Chem. Soc., 125, 15554–15570.
243. Herebian, D.; Wieghardt, K.; Neese, F. (2003) Analysis and Interpretation of Metal-Radical Coupling in
a Series of Square Planar Nickel Complexes. Correlated Ab Initio and Density Functional Investigation of
[Ni(LISQ )2 ] (LISQ =3,5-di-tert-butyl-odiiminobenzosemquinone). J. Am. Chem. Soc., 125, 10997–11005.
244. Herebian, D.; Bothe, E.; Neese, F.; Weyhermüller, T.; Wieghardt, K. (2003) The Molecular and Electronic
Structures of Bis(o-diiminobenzosemiquinonato)metal(II) Complexes (Ni, Pd, Pt), their Monocations and
Anions, and their Dimeric Dications Containing Weak Metal-Metal Bonds. J. Am. Chem. Soc., 125, 9116–9128.
245. Ghosh, P.; Bill, E.; Weyhermüller, T.; Neese, F.; Wieghardt, K. (2003) The non-Innocence of the Ligand
Glyoxal-bis (2-mercaptoanil). The Electronic Structures of [Fe(gma)]2 , [Fe(gma)(py)]• py, [Fe(gma)(CN)]1−/0 ,
[Fe(gma)I], [Fe(gma)(PR3 )n ] (n = 1, 2). Experimental and Theoretical Evidence for ‘Excited State’ Coordination.
J. Am. Chem. Soc., 125, 1293–1308.
246. Einsle, O.; Messerschmidt, A.; Huber, R.; Kroneck, P.M.H.; Neese, F. (2002) Mechanism of the Six Electron
Reduction of Nitrite to Ammonia by Cytochrome c Nitrite Reductase (CCNIR). J. Am. Chem. Soc., 124,
11737–11745.
247. Sun, X.; Chun, H.; Hildenbrand, K.; Bothe, E.; Weyhermüller, T.; Neese, F.; Wieghardt, K. (2002) o-
Iminobenzosemiquinonato(1-) and o-Amidophenolato(2-) Complexes of Palladium(II) and Plantinum(II): A
Combined Experimental and Density Functional Theoretical Study, Inorg. Chem., 41, 4295–4303.
248. Li, M.; Bonnet, D.; Bill, E.; Neese, F.; Weyhermüller, T.; Blum, N.; Sellmann, D.; Wieghardt, K. (2002)
Tuning the Electronic Structure of Octahedral Iron Complexes [FeL(X)] (L = 1-alkyl-4,7-bis(4-tert-butyl-2-
mercaptobenzyl)-1,4,7-triazacyclo-nonane, X = Cl, CH3 O, CN, CO). The S = 1/2 ⇔ S = 3/2 Spin-Equilibrium
of [FeLP r (NO)]. Inorg. Chem., 41, 3444–3456.
249. Lehnert, N.; Neese, F.; Ho, R.Y.N.; Que Jr., L.; Solomon, E.I. (2002) Electronic Structure and Reactivity of
Low-Spin Fe(III)-Hydroperoxo Complexes: Comparison to Activated Bleomycin. J. Am. Chem. Soc., 124,
10810–10822.
250. Grapperhaus, C.A.; Bill, E.; Weyhermüller, T.; Neese, F.; Wieghardt, K. (2001) Electronic and Geometric
Structure and Spectroscopy of a High Valent Manganese(V) Nitrido Complex. An Experimental and DFT
Study. Inorg. Chem., 41, 4191–4198.
565
251. Neese, F., Solomon, E.I. (1998) Detailed Spectroscopic and Theoretical Studies on [Fe(EDTA)(O2 )]3− : the
Electronic Structure of the Side-On Ferric Peroxide Bond and its Relevance to Reactivity. J. Am. Chem. Soc.,
120, 12829–12848.
252. Neese, F.; Liakos, D. G.; Ye, S. F. (2011) Correlated Wavefunction Methods in Bioinorganic Chemistry, J.
Biol. Inorg. Chem, 16, 821–829.
253. Neese, F.; Ames, W.; Christian, G.; Kampa, M.; Liakos, D. G.; Pantazis, D. A.; Roemelt, M.; Surawatanawong,
P.; Ye, S. F. (2010) Dealing with Complexity in Open-Shell Transition Metal Chemistry from a Theoretical
Perspective: Reaction Pathways, Bonding, Spectroscopy, and Magnetic Properties, Adv. Inorg. Chem., 62,
301–349.
254. Orio, M.; Pantazis, D. A.; Neese, F. (2009) Density Functional Theory, Photosynth. Res., 102, 443–453.
255. Neese, F. (2009), Density Functional Theory and EPR Spectroscopy: a guided tour. EPR Newsletter, 18(4),
Pro & Contra section.
256. Neese, F. (2009) Prediction of Molecular Spectra and Molecular Properties with Density Functional Theory:
from Fundamental Theory to Exchange Coupling. Coord. Chem. Rev., 253, 526–563.
257. Neese, F. (2009) Spin Hamiltonian Parameters from First Principle Calculations: Theory and Application. In:
Hanseon, G.; Berliner, L. (Eds.) Biological Magnetic Resonance. Vol 28, pp 175–232.
258. Ray, K.; Petrenko, T.; Wieghardt, K.; Neese, F. (2007) Joint Spectroscopic and Theoretical Investigations of
Transition Metal Complexes Involving Non-Innocent Ligands. Dalton Trans., 1552. (selected for cover picture)
259. Kirchner, B.; Wennmohs, F.; Ye, S.; Neese, F. (2007) Theoretical Bioinorganic Chemistry: Electronic Structure
Makes a Difference, Curr. Op. Chem. Biol., 11, 131–141.
260. Neese, F.; Petrenko, T.; Ganyushin, D.; Olbrich, G. (2007) Advanced Aspects of ab initio Theoretical
Spectroscopy of Open-Shell Transition Metal Ions. Coord. Chem. Rev., 205, 288–327.
261. Ye, S.; Neese, F. (2006) Combined Quantum Chemical and Spectroscopic Studies on Transition Metal
Complexes with Coordinating Radicals. Chemtracts (Special Volume on Computational Inorganic Chemistry),
19, 77–86.
262. Sinnecker, S.; Neese, F. (2006) Theoretical Bioinorganic Spectroscopy, Invited Chapter in the Series Current
Topics in Chemistry, Editor M. Reiher, Springer, Heidelberg.
263. Neese, F. (2006) Quantum Chemical Approaches to Spin-Hamiltonian Parameters. Specialist Periodical Reports
on EPR Spectroscopy Vol. 20, (Ed. B. Gilbert) Royal Scoiety Press.
264. Neese, F. (2006) A Critical Evaluation of DFT, including Time-Dependent DFT, Applied to Bioinorganic
Chemistry. J. Biol. Inorg. Chem., (commentary on invitation), 11, 702–711.
265. Neese, F.; Munzarova, M.L. (2004) Historical Aspects of EPR Parameter Calculations. In: Kaupp, M.; Bühl,
M.; Malkin, V. (Eds) Calculation of NMR and EPR Parameters. Theory and Applications. Wiley-VCH, pp
21–32.
266. Neese, F. (2004) Zero-Field Splitting. In: Kaupp, M.; Bühl, M.; Malkin, V. (Eds) Calculation of NMR and
EPR Parameters. Theory and Applications. Wiley-VCH, pp 541–564.
566 8 Publications Related to ORCA
267. Neese, F. (2004) Application of EPR Parameter Calculations in Bioinorganic Chemistry. In: Kaupp, M.; Bühl,
M.; Malkin, V. (Eds) Calculation of NMR and EPR Parameters. Theory and Applications. Wiley-VCH, pp
581–591.
268. Neese, F. (2003) Quantum Chemical Calculations of Spectroscopic Properties of Metalloproteins and Model
Compounds: EPR and Mössbauer Properties. Curr. Op. Chem. Biol., 7, 125–135.
269. Neese, F.; Solomon, E.I. (2003) Calculation and Interpretation of Spin-Hamiltonian Parameters in Transition
Metal Complexes. Invited review, (Wiley series: Magnetoscience – From Molecules to Materials edited by J.S.
Miller and M. Drillon), Volume IV, p 345–466.
567
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