PR070

G-Biosciences  1-800-628-7730  1-314-991-6034  [email protected]

A Geno Technology, Inc. (USA) brand name

Coomassie Protein Assay

Teacher’s Handbook

(Cat. # BE-402C)

think proteins! think G-Biosciences www.GBiosciences.com

Materials Included with the kit .......................................................................................... 3
SPECIAL HANDLING instructions ........................................................................................ 3
Additional Equipment required ......................................................................................... 3
Time Required ................................................................................................................... 3
Objectives .......................................................................................................................... 4
Background ........................................................................................................................ 4
Teacher’s Pre Experiment Set Up ...................................................................................... 5
Materials for each group ................................................................................................... 5
Procedure .......................................................................................................................... 5
I. Bradford Protein Assay ............................................................................................... 5
II. Determination of the Protein Concentration of the Unknown Protein ..................... 7
Results, Analysis & Assessment ......................................................................................... 9

Page 2 of 12
MATERIALS INCLUDED WITH THE KIT
This kit has enough materials and reagents for 24 students (six groups of four students).

 1 bottle Protein Assay: CB Reagent

 1 bottles Protein Assay: Protein Standard (2mg/ml BSA)
 120 Centrifuge Tubes (1.5ml)

SPECIAL HANDLING INSTRUCTIONS

 Protein Standard can be stored at room temperature up to 6 weeks
 For long-term storage, store at 4C.
 All other reagents can be stored at room temperature.

ADDITIONAL EQUIPMENT REQUIRED

 Laboratory grade or distilled (DI) water
 Spectrophotometer and cuvettes or microplate reader and microplate

TIME REQUIRED
 2-4 hours

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OBJECTIVES
 Learn the principles of protein assays.
 Determine protein concentrations using the Coomassie Protein Assay.

BACKGROUND
The determination of protein concentration is an essential technique in all aspects of
protein studies and proteomics. This lab activity is designed to teach students the
principles behind a common protein estimation assay known as the Coomassie Protein
Assay.

Although there are a wide variety of protein assays available none of the assays can be
used without first considering their suitability for the application. Each method has its
own advantages and limitations and often it is necessary to obtain more than one type
of protein assay for research applications. Protein assays based on these methods are
divided into two categories: dye binding protein assays and protein assays based on
alkaline copper.

The dye binding protein assays are based on the binding of protein molecules to
Coomassie dye under acidic conditions. The binding of protein to the dye results in a
spectral shift, the color of Coomassie solution changes from brown (absorbance
maximum 465nm) to blue (absorbance maximum 610nm). The change in color density is
read at 595nm and is proportional to the protein concentration. This assay is also
known as the Bradford reaction.

In the copper ion based protein assays, protein solutions are mixed with an alkaline
2+
solution of copper salt, cupric ions (Cu ). The protein assay is based on the interaction
of cupric ions with protein in an alkaline solution and is commonly referred to as the
2+
Biuret assay. The interaction of cupric ions (Cu ) with protein results in a purple color
that can be read at 545nm. The amount of color produced is proportional to protein
concentration.

2+
Under alkaline conditions cupric ions (Cu ) chelate with the peptide bonds resulting in
2+ +
reduction of cupric ions (Cu ) to cuprous ions (Cu ). The Cuprous ions can also be
detected with Folin Ciocalteu Reagent (phosphomolybdic/phosphotungstic acid); this
+
method is commonly refereed to as the Lowry method. Cuprous ions (Cu ) reduction of
Folin Ciocalteu Reagent produces a blue color that can be read at 650-750nm. The
amount of color produced is proportional to the amount of peptide bonds, i.e. size as
well as the amount of protein/peptide.

In this lab activity students will study perform the Coomassie protein assay methods.

Page 4 of 12
TEACHER’S PRE EXPERIMENT SET UP
1. Prepare unknown protein samples. Label six tubes with “Unknown Protein” and
transfer 0.1ml Protein Assay: Protein Standard to each tube. Add 0.250ml distilled
water to each tube and briefly shake to mix. Supply each group with one tube.

2. Aliquot reagents for each student group according to the next section.

MATERIALS FOR EACH GROUP

Supply each group with the following components. Several components are shared by
the whole class and should be kept on a communal table.

 15ml CB Reagent
 0.7ml Protein Standard (2mg/ml BSA)
 DI Water
 350l Unknown Protein
 14 Centrifuge Tubes (2ml)

PROCEDURE

Wear gloves throughout the whole procedure.

I. Bradford Protein Assay

1. Add 0.7ml DI water to the tube with the Protein Standard (2mg/ml BSA) to dilute to
make a 1mg/ml BSA solution.

2. For a standard curve, prepare a range of protein standards with the diluted BSA
(1mg/ml) from step 1, as indicated in Table 1.

Table 1
BSA Concentration (mg/ml) 0.0 0.1 0.3 0.5 0.8 1.0
Diluted BSA (ml) 0.00 0.05 0.15 0.25 0.40 0.50
DI Water (ml) 0.50 0.45 0.35 0.25 0.10 0.00
3. Label two sets of tubes with 0, 0.1, 0.3, 0.5, 0.8 and 1.0 and transfer 0.05ml of the
appropriate standard to the tubes.

4. Label two tubes for the Unknown Protein and add 0.05ml of each sample to the
appropriate tube.

5. Mix the CB Reagent gently by inverting the bottle several times.

To avoid foaming, DO NOT SHAKE THE BOTTLE.

Page 5 of 12
6. Add 1ml CB Reagent to each tube and vortex briefly to mix the content. Incubate
the tubes at room temperature for 5 minutes.

7. In the meantime, turn on the spectrophotometer to allow it to warm up. Adjust the
wavelength to 595nm.

8. Add 1ml distilled water to a cuvette to zero the absorbance of the

spectrophotometer. Measure the absorbance of each tube and record the values in
the results section. See Section IV to determine the concentration of Unknown
Protein.

The absorbance can be measured with a microplate reader instead of

using a spectrophotometer. Transfer 250μl from each assay tube to a
microtiter plate well. Add 250μl distilled water to a well as reference
blank. Read the absorbance at 595nm.

Page 6 of 12
II. Determination of the Protein Concentration of the Unknown Protein
Determine the protein concentration with traditional paper plot.

1. Draw the points with protein concentrations as x values and the average
absorbance as y values on a grid or graph paper.

2. Draw a straight line through the points.

3. Lookup the Unknown Protein concentration from the plot using the absorbance
value of the Unknown Protein.

Determine the protein concentration using Microsoft Excel

1. Input the BSA standard concentration in a column and the absorbance value in a
second column.
Highlight the data in the two columns
From the menu bar, choose Insert then Chart.
A “Chart Wizard” Menu will appear

2. Under the “Standard Types” tab:

For “Chart type” select: XY (Scatter)
For “Chart sub-type” select the top chart
(The one without any lines connecting the points) Click Next>

3. Under series in select columns

Click Next>

Page 7 of 12
4. Under the “Titles” tab: Type in appropriate titles (names) for the graph (chart) and
the x and y-axes
(e.g., Chart title: Coomassie Assay, x-axis: Absorbance, y-axis: Protein Concentration
(mg/ml))
Under the “Legend” tab: Click on the checkmark next to “Show legend”
(The checkmark should disappear), Click Next>

5. Click on circle to left of “As object in” (a dot should appear in the circle)
Click Finish.
Your graph should appear on the sheet where your data is.

6. Highlight the chart by clicking inside the chart area.

From the menu bar, choose Chart then Add Trendline
The “Add Trendline” window will appear

7. Under the “Type” tab: For “Trend/Regression type” select: Linear

8. Under the “Options” tab:

Click on box to left of “Display equation on chart” (a checkmark appears)
Click on box to left of “Display R-squared on chart” (a checkmark appears), Click OK.

9. Move the equation and R-squared value to a suitable location on the graph. Save
and print the data sheet.

10. Use the equation on the chart to calculate the concentration of your unknown
protein.

Page 8 of 12
RESULTS, ANALYSIS & ASSESSMENT
Coomassie Protein Assay

Tube # Absorbance I Absorbance II Average Protein Conc.

(595nm) (595nm) (mg/ml)
0 0
0.1 0.1
0.3 0.3
0.5 0.5
0.8 0.8
1 1
Unknown Protein

Q. Determine the concentration of the “Unknown Protein” and the range of total
amounts of protein used in each assay reaction for the three assays and comment on
your findings.

A. Unknown protein concentration is approximately 0.6mg/ml. The range is

0.005mg – 0.050mg BSA protein used, the linear part of the curve.

Q. Briefly describe the principles behind the protein assay and their weakness
and strengths.

A: Bradford Protein Assay- based on the binding of protein molecules to

Coomassie dye under acidic conditions. The binding of protein to the dye results in
spectral shift, the color of Coomassie solution changes from brown to blue. Weakness-
sensitive to detergents and other lab reagents.

Last saved: 8/11/2014 CMH

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www.GBiosciences.com

Page 12 of 12
 PR071

G-Biosciences  1-800-628-7730  1-314-991-6034  [email protected]

A Geno Technology, Inc. (USA) brand name

Coomassie Protein Assay

Student’s Handbook

(Cat. # BE-402C)

think proteins! think G-Biosciences www.GBiosciences.com

OBJECTIVES ........................................................................................................................ 3
BACKGROUND ................................................................................................................... 3
MATERIALS FOR EACH GROUP .......................................................................................... 4
PROCEDURE ....................................................................................................................... 4
I. BRADFORD PROTEIN ASSAY ........................................................................................ 4
II. DETERMINATION OF THE PROTEIN CONCENTRATION OF THE UNKNOWN PROTEIN 5
RESULTS, ANALYSIS & ASSESSMENT .................................................................................. 6
COOMASSIE PROTEIN ASSAY ......................................................................................... 6

Page 2 of 8
OBJECTIVES
 Learn the principles of protein assays.
 Determine protein concentrations using the Coomassie Protein Assay.

BACKGROUND
The determination of protein concentration is an essential technique in all aspects of
protein studies and proteomics. This lab activity is designed to teach students the
principles behind a common protein estimation assay known as the Coomassie Protein
Assay.

Although there are a wide variety of protein assays available none of the assays can be
used without first considering their suitability for the application. Each method has its
own advantages and limitations and often it is necessary to obtain more than one type
of protein assay for research applications. Protein assays based on these methods are
divided into two categories: dye binding protein assays and protein assays based on
alkaline copper.

The dye binding protein assays are based on the binding of protein molecules to
Coomassie dye under acidic conditions. The binding of protein to the dye results in a
spectral shift, the color of Coomassie solution changes from brown (absorbance
maximum 465nm) to blue (absorbance maximum 610nm). The change in color density is
read at 595nm and is proportional to the protein concentration. This assay is also
known as the Bradford reaction.

In the copper ion based protein assays, protein solutions are mixed with an alkaline
2+
solution of copper salt, cupric ions (Cu ). The protein assay is based on the interaction
of cupric ions with protein in an alkaline solution and is commonly referred to as the
2+
Biuret assay. The interaction of cupric ions (Cu ) with protein results in a purple color
that can be read at 545nm. The amount of color produced is proportional to protein
concentration.

2+
Under alkaline conditions cupric ions (Cu ) chelate with the peptide bonds resulting in
2+ +
reduction of cupric ions (Cu ) to cuprous ions (Cu ). The Cuprous ions can also be
detected with Folin Ciocalteu Reagent (phosphomolybdic/phosphotungstic acid); this
+
method is commonly refereed to as the Lowry method. Cuprous ions (Cu ) reduction of
Folin Ciocalteu Reagent produces a blue color that can be read at 650-750nm. The
amount of color produced is proportional to the amount of peptide bonds, i.e. size as
well as the amount of protein/peptide.

In this lab activity students will study perform the Coomassie protein assay methods.

Page 3 of 8
MATERIALS FOR EACH GROUP
Supply each group with the following components. Several components are shared by
the whole class and should be kept on a communal table.

 15ml CB Reagent
 0.7ml Protein Standard (2mg/ml BSA)
 DI Water
 350l Unknown Protein
 14 Centrifuge Tubes (2ml)

PROCEDURE

Wear gloves throughout the whole procedure.

I. Bradford Protein Assay

1. Add 0.7ml DI water to the tube with the Protein Standard (2mg/ml BSA) to dilute to
make a 1mg/ml BSA solution.

2. For a standard curve, prepare a range of protein standards with the diluted BSA
(1mg/ml) from step 1, as indicated in Table 1.

Table 1
BSA Concentration (mg/ml) 0.0 0.1 0.3 0.5 0.8 1.0
Diluted BSA (ml) 0.00 0.05 0.15 0.25 0.40 0.50
DI Water (ml) 0.50 0.45 0.35 0.25 0.10 0.00

3. Label two sets of tubes with 0, 0.1, 0.3, 0.5, 0.8 and 1.0 and transfer 0.05ml of the
appropriate standard to the tubes.

4. Label two tubes for the Unknown Protein and add 0.05ml of each sample to the
appropriate tube.

5. Mix the CB Reagent gently by inverting the bottle several times.

To avoid foaming, DO NOT SHAKE THE BOTTLE.

6. Add 1ml CB Reagent to each tube and vortex briefly to mix the content. Incubate
the tubes at room temperature for 5 minutes.

7. In the meantime, turn on the spectrophotometer to allow it to warm up. Adjust the
wavelength to 595nm.

Page 4 of 8
8. Add 1ml distilled water to a cuvette to zero the absorbance of the
spectrophotometer. Measure the absorbance of each tube and record the values in
the results section. See Section IV to determine the concentration of Unknown
Protein.

The absorbance can be measured with a microplate reader instead of using a

spectrophotometer. Transfer 250μl from each assay tube to a microtiter
plate well. Add 250μl distilled water to a well as reference blank. Read the
absorbance at 595nm.

II. Determination of the Protein Concentration of the Unknown Protein

Determine the protein concentration with traditional paper plot.

1. Draw the points with protein concentrations as x values and the average
absorbance as y values on a grid or graph paper.

2. Draw a straight line through the points.

3. Lookup the Unknown Protein concentration from the plot using the absorbance
value of the Unknown Protein.

Determine the protein concentration using Microsoft Excel

1. Input the BSA standard concentration in a column and the absorbance value in a
second column.
Highlight the data in the two columns
From the menu bar, choose Insert then Chart.
A “Chart Wizard” Menu will appear

2. Under the “Standard Types” tab:

For “Chart type” select: XY (Scatter)
For “Chart sub-type” select the top chart
(The one without any lines connecting the points) Click Next>

3. Under series in select columns

Click Next>

4. Under the “Titles” tab: Type in appropriate titles (names) for the graph (chart) and
the x and y-axes
(e.g., Chart title: Coomassie Assay, x-axis: Absorbance, y-axis: Protein Concentration
(mg/ml))
Under the “Legend” tab: Click on the checkmark next to “Show legend”
(The checkmark should disappear), Click Next>

Page 5 of 8
5. Click on circle to left of “As object in” (a dot should appear in the circle)
Click Finish.
Your graph should appear on the sheet where your data is.

6. Highlight the chart by clicking inside the chart area.

From the menu bar, choose Chart then Add Trendline
The “Add Trendline” window will appear

7. Under the “Type” tab: For “Trend/Regression type” select: Linear

8. Under the “Options” tab:

Click on box to left of “Display equation on chart” (a checkmark appears)
Click on box to left of “Display R-squared on chart” (a checkmark appears), Click OK.

9. Move the equation and R-squared value to a suitable location on the graph. Save
and print the data sheet.

10. Use the equation on the chart to calculate the concentration of your unknown
protein.

RESULTS, ANALYSIS & ASSESSMENT

Coomassie Protein Assay

Tube # Absorbance I Absorbance II Average Protein Conc.
(595nm) (595nm) (mg/ml)
0 0
0.1 0.1
0.3 0.3
0.5 0.5
0.8 0.8
1 1
Unknown Protein
Q. Determine the concentration of the “Unknown Protein” and the range of total
amounts of protein used in each assay reaction for the three assays and comment on
your findings.

____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________

Page 6 of 8
Q. Briefly describe the principles behind the protein assay and their weakness
and strengths.

____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
_________

____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
____________________________________________________________________
___________________

Last saved: 8/11/2014 CMH

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www.GBiosciences.com

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