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Lecture 1

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ATOMIC STRUCTURE

From your knowledge of Chemistry, you have learned that all matter is composed of ATOMS. An atom
consists of a dense positively charged nucleus surrounded at a relatively large distance by a negatively charged
electron.

The nucleus consists of sub atomic particles protons which are positively charged and neutrons which
are electrically neutral. Because an atom is neutral over all, the number of positive charged in the nucleus and
the number of negatively charged electrons surrounding the nucleus is the same. Although extremely small –
about 10-14 to 10-15m in diameter, the nucleus contains all the mass of the atom. Electrons have negligible mass
and circulate around the nucleus at a distance of approximately 10-10m. Thus, the diameter of a typical atom is
about 2x10-10m or 200 picometer (pm), where 1 pm = 10-12m.
A specific atom is described by its atomic number (z) which gives the number of protons it contains in
the nucleus and the number of electrons surrounding the nucleus. All the atom of a particular elements has
the same atomic number and each element has a different atomic number from that of any other element.
Example: Carbon atom (z=6) have 6 protons and 6 electrons
Oxygen atom (z=8) have 8 protons and 8 electrons

The total number of protons and neutrons in the nucleus of an atom is its mass number, (A). Each
protons and each neutron contributes one unit to the mass number. Thus, a carbon atom with 6 protons and 6
neutrons in its nucleus has a mass number of 12, a uranium atom with 92 protons and 146 neutrons on its
nucleus has a mass number of 238.
Atoms with the same atomic number but different mass number are called isotopes. Isotopes of an
element are atoms that have different number of neutrons and therefor different mass number. Carbon has
three naturally occurring isotopes, 12C, 13C, 14C. All of these carbon isotopes, have 6 protons and 6 electrons.
We can therefor say that the chemical properties of an element are primarily determined by the number of
electrons, so all isotopes of an element have nearly identical chemical behavior, even though they have
different mass.

ELECTRONIC CONFIGURATION AND THE PERIODIC TABLE


How are electrons arranged/distributed in an atom? Neil Bohr proposed the orbital model of an atom.
In Bohr’s model, the energy of the electrons is quantinized – that is the electrons is restricted to only certain
allowed energies. The path of the electrons circulating around the nucleus is called energy level, n, where n is
a positive integer. The lowest principle energy level corresponds to n = 1, the n = 2 and so on. As n increases,
the energy of the electrons increases and the electron is found on average further from the nucleus. Each
energy level has a maximum electron population following the formula n2, where n is the principal quantum
number.
Principal quantum number, n Maximum electron population
1 2 electrons
2 8 electrons
3 18 electrons
4 32 electrons

The nucleus can move from one orbit


to another only if the atom absorbs or emit a photon whose energy equals the difference in energy level. The
lowest energy level (n = 1) is called the ground stable. When the electron is in the second or any higher orbit,
the atom is said to be in excited state. Neil Bohr also stated that electron has to be in only specific energy
level, it cannot exist between energy level. When electrons fall from a high energy level to the lower energy
level, a quantum of energy is emitted as light at specific frequency and wavelength.
After Bohr orbital model of an atom, another scientist by the name Schrodinger created a mathematical
model that described electron as waves. Using his wave mechanic concepts, we can determine the probability
of finding electrons in a certain region around the atom. It is important to recognized that we cannot locate an
electron precisely within an atom, however, it is clear that electrons are not revolving around the nucleus in
orbits as Bohr postulated. The electrons are instead found in orbitals. An orbital is a region in space around the
nucleus where there is a high probability of finding given electrons.

Electron density diagram, sometimes called


electron cloud representation. The electron density
decrease with distance from the nucleus along a
line. The probability of the electrons being far from
the nucleus is very small but not zero.

The atoms’ principal level n, is subdivided into sublevels or subshells which designate the orbital shape.
Sublevels are designated as s, p, d, and f, where these letters are derived from the names of spectroscopic
lines, sharp, principal, diffuse, and fundamental.
For: n sublevels
1 s
2 sp
3 spd
4 spdf

The electron population per sublevels are; s = ze-, p = 6e-, d = 10e, and f = 1αe-.
Each orbital has a specific shape; an s orbital is spherical with the nucleus at its center, a p orbital is dumb bell,
d-orbital is cloverleaf shaped. Of the four orbitals, we will consider only the s and p orbitals because these are
the most common in Organic and Biochemistry. Each orbital can hold 2 electrons of opposite spins.

s-orbital p-orbital

The p sublevels have 3 orbitals, the Px, Py, and Pz. Each 3 orbitals have 2 lobes.

THE PERIODIC TABLE AND ELECTRON ARRANGEMENT


The elements in the periodic table is arranged according to group, the vertical arrangement and
periods, the horizontal arrangement. There are 8 groups and 7 periods. The periods represent the main energy
level and the group number represents the number of electron in the outer shell which is called the valence
shell. In writing the electronic configuration, the periodic table is divided into blocks, the s – block, p – block, d
– block, and f – block (see illustration). All the elements in the s – block will end with s, p – block, p and so on.

Example:
Element Electronic Configuration Orbital diagram
1H 1s1

2He 1s2

3Li 1s2 2s1

4Be 1s2 2s2

5B 1s2 2s2 2p1


Or 2Px1 2Py0 2Pz0

6C 1s2 2s2 2p2

2Px1, 2Py1, 2Pz1

8O 1s2 2s2 2p4


2PX2, 2PY1, 2PZ1
11Na 1s2 2s2 2p6 3s1
15P 1S2 2S2 2P6 3S2 3P3

From the electronic configuration, we can write the electron dot symbol or Lewis symbol of the
atom. The electron dot symbol is composed of the symbol of the element surrounded by dots which
represents the outer shell electrons. The outer shell is called the valence shell and the electron in this shell is
called the valence electrons. From the above example; for Oxygen – 1s2 2s2 2p4, the second principal energy
level is the valence shell; and the valence electrons is 6; so the electron dot or Lewis symbol is

Lewis symbol for the atom:

Be:
He:

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