Protein Purification by Affinity Chromatography: January 2012
Protein Purification by Affinity Chromatography: January 2012
Protein Purification by Affinity Chromatography: January 2012
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2 Protein Purification by
3 Affinity Chromatography
4 Luana C. B. B. Coelho1, Andréa F. S. Santos2, Thiago H. Napoleão1,
5 Maria T. S. Correia1 and Patrícia M. G. Paiva1
6 1UniversidadeFederal de Pernambuco, Centro de Ciências Biológicas,
7 Departamento de Bioquímica, Av, Prof. Moraes Rego, Recife-PE,
8 2University of Minho, IBB-Institute for Biotechnology and Bioengineering,
11 2Portugal
12 1. Introduction
13 Affinity chromatography is a method which depends essentially on the interaction between
14 the molecule to be purified and a solid phase that will allow the separation of contaminants.
15 Lectins are carbohydrate-binding proteins which can be purified by affinity
16 chromatography; also, the presence of multiple molecular forms of lectins in a preparation
17 can be separated. Immobilized lectins have been useful to affinity protein purification. In
18 immunoaffinity chromatography an antibody or an antigen is immobilized on a support so
19 as to purify the protein against which the antibody was developed. Monoclonal antibodies
20 are extremely useful as immunosorbents for purification of antigen. Immobilization of
21 monoclonal antibody on a suitable material to the column produces a support that will bind
22 with high selectivity to protein against which the antibody was developed. Affinity
23 chromatography containing DNA is a highly specific and important technique for the
24 purification of DNA-binding proteins involved in the transcription, replication and
25 recombination. The success of affinity chromatography depends on the conditions used in
26 each chromatographic step. So, the optimization of protocol is essential to achieve optimal
27 protein purification with maximum recovery.
1 The adsorption corresponds to the fixation of the molecules of a substance (the adsorbate)
2 on the surface of another substance (the adsorbent), which may be immobilized to an
3 insoluble support. The adsorbate and the adsorbent can be referred as bioligands. The
4 bioligands may be specific or may not have absolute specificity of interaction. Many
5 bioligands (e.g. NAD+, ATP, coenzyme A) may bind different enzymes, being then called
6 group-specific ligands. In the same manner, chitin (a polysaccharide composed by N-acetyl-
7 D-glucosamine units) may be an adsorbent for several different molecules if they possess a
8 group (e.g. a binding or catalytic site) able to interact with chitin.
9 Affinity chromatography is a powerful tool for the purification of substances in a complex
10 biological mixture. It can also serve to separate denatured and native forms of the same
11 substance. Thus, biomolecules which are difficult to purify have been obtained using
12 bioselective adsorbents, e.g. immobilized metal ions (Ni2+ and Zn2+) used to purify proteins
13 containing zinc finger domains with natural affinity to divalent ions (Voráčková et al., 2011).
14 The relative specificity degree of the affinity chromatography is due to the exploitation of
15 biochemical properties inherent in certain molecules, instead of using small differences in
16 physicochemical properties (such as size, form and ionic charge, which are employed by
17 other chromatographic methods).
18 Affinity chromatography may be used with different final objectives. If the aim is a rapid
19 purification of a macromolecule with high yield, many controls and careful attention are
20 necessary to establish the best conditions for a high bioselectivity of the system; the
21 researcher must be prepared to adjust the chromatographic conditions and to circumvent
22 possible absence of bioselectivity or low yields. If the objective is to first demonstrate a
23 bioselectivity for further purification, the choice of the bioselective adsorbent is dependent
24 on the physiological interaction between the bioselective component and the macromolecule
25 to be purified. In this case, the researcher must spend a lot of time establishing the
26 bioselectivity before starting the isolation experiments.
27 A good bioselectivity means that the affinity of the molecule by the ligand exceeds all factors
28 of non-specific adsorption that are present in the system. Also, the affinity should not be so
29 strong, since the biomolecule must be removed from the column. A well-designed affinity
30 method should consider the selection of the ligand molecule or the insoluble support to be
31 used; they must have specific and reversible binding affinity for the molecule being purified.
32 After defining the protocol, purification by affinity chromatography is a rapid method,
33 compared with others less specific. The technique also enables the concentration of the
34 molecule of interest resulting in a small volume of a concentrated product.
35 Standard procedures of protein purification result in obtainment of homogeneous protein.
36 However, a considerable cost of supplies and hours of work is often required and a low
37 yield is obtained after several steps. The power of affinity chromatography is often larger
38 than other chromatographic techniques, resulting in several hundred or thousand-fold
39 purification factors in a single step.
1 groups capable of forming covalent bonds with the molecule to be immobilized. Many
2 materials are available (Table 1). A variety of supports with immobilized ligands, or stable
3 media for the immobilization of ligands through different functional groups are
4 commercially available. The ligand molecule to be used should contain a group capable of
5 being chemically modified, often an amino group, which will allow connection with the
6 matrix without destroying its capacity to bind to the molecule of interest.
7
Supports References
Affi-gel blue gel Wong et al., 2006
α-casein-Agarose Kocabiyik & Ozdemir, 2006
Chitin Sá et al., 2008; Coelho et al., 2009; Santana et
al., 2009; Napoleão et al., 2011a
Fetuin-fractogel Guzmán-Partida et al., 2004
Fetuin-Sepharose CL-4B Bhowal et al., 2005
Ferromagnetic levan composite Angeli et al., 2009
GalNac-Sepharose CL-4B Gade et al., 1981
Galactosyl-Sepharose Franco- Fraguas et al., 2003
Glutathione reduced (GSH)-Sepharose Hamed et al., 2011
Guar gel Coelho & Silva, 2000; Santos et al., 2009;
Nunes et al., 2011; Souza et al., 2011
IMAC (immobilized metal ion affinity Voráčková et al., 2011
chromatography)-Sepharose
Sephadex G25 Santana et al., 2009
Sephadex G50 Fenton-Navarro et al., 2003
Sephadex G75 Correia & Coelho, 1995
Sepharose-manose gel Latha et al., 2006
Lectin-Sepharose CL-4B Paiva et al., 2003; Silva et al., 2011
Trypsin-Agarose Leite et al., 2011
1 acids and lipids are present in higher concentrations in crude extracts. In general, before the
2 chromatography, one or more steps for partial separation of undesirable constituents are
3 incorporated into the purification protocol.
4
5 Fig. 1. Schematic representation of the equilibration (1), adsorption/washing (2) and
6 desorption (3) steps of an affinity chromatography for protein purification.
6 Protein Purification
1 Among the parameters used to evaluate if a preparation is pure can be cited electrophoresis,
2 immunological and chromatographic methods. The homogeneity of a protein preparation
3 should not be judged by isolated parameters. The indication of protein purity is obtained by
4 analysis of various speculations.
5 Affinity chromatography is a useful tool in proteomics studies; this method plays an
6 essential role in the isolation of protein complexes and in the identification of protein–
7 protein interaction networks. In glycoproteomics, serial lectin affinity chromatography was
8 applied in the process for identification of over thirty proteins from the human blood with
9 O-glycosylation sites (Durham & Regnier, 2006). Affinity chromatography is also required
10 for quantification of protein expression by using isotope-coded affinity tags (Azarkan et al.,
11 2007).
1 origin, containing two or more binding sites for mono or oligosaccharides. These molecules
2 have the ability to agglutinate cells such as erythrocytes (hemagglutination), lymphocytes,
3 fibroblasts and bacteria, being also able to precipitate glycoconjugates (Goldstein et al., 1980;
4 Barondes, 1988; Kennedy et al., 1995; Correia et al., 2008; Sá et al., 2009a).
5 To be considered a lectin, the hemagglutinating activity should be inhibited by a
6 carbohydrate; when addition of mono or oligosaccharides neutralizes the agglutination
7 phenomenon, the protein is considered a potential lectin.
8 The lectin purification may be performed by conventional or high resolution techniques.
9 However, in most of the purification processes, the affinity chromatography is used. The
10 lectins are real models of protein purification exploring affinity interactions.
11 The lectin extracted from Canavalia ensiformis seeds (jack bean) named Concanavalin A (Con
12 A) was the first lectin to be crystallized. Since then, an increasing number of lectins with
13 similar or different specificities have been obtained.
14 Lectins have been purified from Cratylia mollis seeds using Sephadex (cross-linked dextran
15 gel) matrices allying the gel filtration property of this support and the ability of the lectins to
16 bind glucose (Paiva & Coelho, 1992; Correia & Coelho, 1995).
17 Guar gel beads produced by cross-linking of refined guar gum (a polysaccharide composed
18 of glucose and mannose) with epichlorohydrin in a mixture of water and 2-propanol (Gupta
19 et al., 1979) have been used to purify galactose-specific lectins (Santos et al., 2009; Nunes et
20 al., 2011).
21 Chitin-binding lectins can be isolated by affinity chromatography on columns containing
22 powder of chitin from crab shells hydrated with the equilibrating solution. This is a cheap,
23 efficient, and rapid technique to purify these lectins, which have great potential as
24 insecticidal and antimicrobial agents (Sá et al., 2009a; Sá et al; 2009b; Santana et al., 2009;
25 Coelho et al., 2009; Ferreira et al., 2011; Napoleão et al., 2011a; Napoleão et al., 2011b).
26 A ferromagnetic levan (a homopolysaccharide composed of D-fructofuranosyl) composite
27 was developed and efficiently used in purification of C. mollis lectin (Angeli et al., 2009). Egg
28 glycoproteins were immobilized and the affinity matrix was efficient to purify lectins from
29 extracts of Phaseolus vulgaris, Lens culinaris, and Triticum vulgaris (Zocatelli et al., 2003).
30 Lectins can be used for observation of the most diverse phenomena and the study of these
31 proteins allows the evaluation of different cell surfaces. It is known that all cells have a
32 membrane containing carbohydrates, consisting mainly of glycoproteins and glycolipids,
33 that are different for each cell and which may constitute the lectin receptors. In the same cell,
34 the surface structure can change characteristically due to normal development course or
35 cases of illness. The lectins have been used very successfully in histochemistry (Beltrão et al.,
36 1998, Lima et al., 2010) and electrochemistry (Souza et al., 2003, Oliveira et al., 2008, 2011b)
37 with diagnostic purposes.
1 Moringa oleifera is a multipurpose tree with great importance in industry and medicine.
2 Lectins have been found in extracts from distinct tissues of M. oleifera (Santos et al., 2009).
3 Seeds from moringa are used to treat water for human consumption and different lectins
4 were detected in this tissue (Santos et al., 2005; Katre et al., 2008; Santos et al., 2009; Coelho
5 et al., 2009). Santos et al. (2005) found a water-soluble M. oleifera lectin (WSMoL) that is the
6 unique M. oleifera lectin inhibited by fructose. WSMoL was isolated through affinity
7 chromatography on chitin column and showed larvicidal activity against fourth-stage larvae
8 of Aedes aegypti (Coelho et al., 2009). This lectin is also a potential natural biocoagulant for
9 water, reducing turbidity, suspended solids and bacteria (Ferreira et al., 2011). Genotoxicity
10 assessment of WSMoL showed that it was not mutagenic and was not able to promote
11 breaks in DNA structure (Rolim et al., 2011).
12 Santos et al. (2009) purified a lectin with coagulant properties from M. oleifera seeds (cMoL)
13 by affinity chromatography on guar gel. cMoL agglutinated erythrocytes from rabbit and
14 human, was insecticidal for Anagasta kuehniella and, when immobilized, served as an affinity
15 support able to interact with humic acids (Oliveira et al., 2011a; Santos et al., 2011).
16 Coelho & Silva (2000) purified a galactose-specific lectin (BmoLL) from the fresh leaves of
17 Bauhinia monandra. Also, other galactose-specific lectin was purified from B. monandra
18 secondary roots, BmoRoL (Souza et al., 2011). These lectins were purified in milligram
19 quantities by affinity chromatography on guar gel. BmoLL showed insecticidal activity on
20 Callosobruchus maculatus, Anagasta kuehniella and Zabrotes subfasciatus (Macedo et al., 2007)
21 while BmoRoL showed antifungal and termiticidal activities (Souza et al., 2011); thus, these
22 lectins have biotechnological potential for application in control of agricultural pests.
23 In our studies, the presence of lectin isoforms has been revealed. The exploration and
24 knowledgement of multiple molecular forms of lectins in extracts or in early stages of
25 fractionation is very important. A substantial proportion of proteins have been described
26 with multiple molecular forms having or not defined genetic origin.
27 The Parkia pendula (visgueiro) is a majestic tree from the Brazilian Atlantic Forest that stands
28 out by their generous production of vegetables. Extracts of its seeds showed
29 hemagglutinating activity with erythrocytes from humans and various animal species. The
30 best monosaccharide inhibitors of the hemagglutinating activity from P. pendula were α-
31 methyl D-mannoside, D (+)-mannose and D (+)-glucose, in descending order. To purify the
32 lectin, a seed extract in 0.15 M NaCl, was fractionated with ammonium sulfate (40%). The 0-
33 40F recovered 97% of total hemagglutinating activity. The dialyzed preparation was
34 chromatographed by affinity on Sephadex G-75, and eluted with 0.3 M glucose. The purity
35 of the obtained preparation allowed the crystallization of the lectin (Lombardi et al., 1998).
36 Other supports for purification of P. pendula lectin by affinity chromatography were also
37 exploited for its purification. Although the lectin was not inhibited by N-acetyl-D-
38 glucosamine, the support chitin was used to purify two molecular forms of lectin (Souza,
39 1989). The absence of inhibitory effect of carbohydrate on hemagglutinating activity does
40 not imply in an inability of lectin to adsorb on an affinity support containing this
41 carbohydrate (Lis & Sharon, 1981).
42 Myracrodruon urundeuva (aroeira-do-sertão) is a plant with importance in traditional
43 medicine and its heartwood is resistant to fungi and termite attack. Lectins were isolated
10 Protein Purification
1 from M. urundeuva bark (MuBL), heartwood (MuHL) and leaf (MuLL) by affinity
2 chromatography on chitin columns. Similarly to P. pendula lectin, the hemagglutinating
3 activity of MuLL is not inhibited by N-acetyl-D-glucosamine but the lectin bind to chitin.
4 The affinity interaction between MuLL and this monosaccharide was demonstrated by
5 affinity chromatography on N-acetyl-D-glucosamine-Agarose column (Napoleão et al.,
6 2011a).
7 MuHL showed antimicrobial activity inhibiting the growth of bacteria and fungi (Sá et al.,
8 2009a). The three lectins showed termiticidal activity against Nasutitermes corniger and
9 insecticidal effect on fourth-stage larvae of A. aegypti (Sá et al., 2008; Sá et al., 2009b;
10 Napoleão et al., 2011a; Napoleão et al., 2011b).
1 7. Immunoaffinity chromatography
2 The immunoaffinity chromatography consists of an antibody (immunoglobulin)
3 immobilized on a support to purify the protein against which the antibody was
4 developed. Antibodies specific for the protein of interest are produced by the immune
5 system when the exogenous protein is inoculated in the animal; after, polyclonal antibodies
6 are extracted from the blood serum of the animal, isolated and immobilized to constitute a
7 matrix for purification of the protein of interest (Figure 2). Since the polyclonal antibodies
8 are products from many different cells of the immune system, they are heterogeneous,
9 differing in binding affinity for the protein inoculated on the animal.
10
11
12 Fig. 2. Immunoaffinity chromatography for protein purification. First, the antibody for a
13 specific protein is developed immunizing an animal. Next, the antibodies produced are
14 purified and immobilized for use as immunoaffinity support.
15 Polyclonal antibodies (IgY) were developed against Plasmodium falciparum proteins and
16 immobilized for use in immunoaffinity chromatography columns; the technique was more
17 efficient than conventional chromatography (using two anion exchange columns) in
18 purification of chimeric proteins expressed in Escherichia coli that are candidates for use as
19 vaccine to prevent malaria (Qu et al., 2011).
20 The native Cramoll 1 was used to develop a serum anti-Cramoll 1 produced by rabbits. The
21 anti-Cramoll 1 immunoglobulin (IgG anti-Cramoll 1) was obtained by affinity
22 chromatography on Protein A-Sepharose. The antibody was conjugated to peroxidase (IgG
23 anti-Cramoll 1-Per) and the conjugate was used to evaluate the structural assessment of the
24 lectin (Correia & Coelho, 1995).
12 Protein Purification
1 organization and accessibility of genetic information in Archaea. This protein was purified
2 by polyethyleneimine precipitation followed by nickel affinity chromatography; this
3 protocol has potential application in the production of other thermophilic and mesophilic
4 proteins in the Sac10b family (Xuan et al., 2009). A telomeric DNA-binding protein (Stn1p)
5 from Saccharomyces cerevisae was purified by interaction with nickel-NTA resin followed by
6 chromatography on Superdex 200 column (Qian et al., 2010).
7
8 Fig. 3. Schematic representation of DNA-affinity chromatography. In the first step, the
9 support containing a synthetic oligonucleotide consisting of a tandem repeated unit is
10 washed equilibrated. Next, the mixture containing proteins is loaded and the DNA-binding
11 protein that recognizes the oligonucleotide adsorb on the support. The elution is performed
12 by solutions containing a very high concentration of salt.
14 Protein Purification
21 10. Acknowledgments
22 The authors express their gratitude to the Conselho Nacional de Desenvolvimento Científico e
23 Tecnológico (CNPq) for research grants and fellowships (LCBBC, MTSC and PMGP). We are
24 also grateful to the Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco
25 (FACEPE) and the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for
26 financial support. It is also acknowledged the Portuguese Fundação para Ciência e a Tecnologia
27 (FCT) through the Post-doctoral grant SFRH/BPD/37349/2007 (AFSS).
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