JHU Engineering 2012 2013 Catalog

The Johns Hopkins University
Engineering
3400 North Charles Street
Baltimore, Maryland 21218
for Professionals
WHITING SCHOOL OF ENGINEERING
2012–2013 | Engineering for Professionals | Graduate Programs

Dorsey Center Washington, DC Center
Elkridge, MD Washington, DC Online @ EP
Montgomery County Campus

Rockville, MD
Higher Education
Homewood Campus
Conference Center @ HEAT
Baltimore, MD
Aberdeen, MD
Crystal City Center

Arlington, VA
Applied Physics Laboratory
Laurel, MD
Southern Maryland Higher

Education Center
California, MD
www.ep.jhu.edu
[email protected]
1.800.548.3647
Aberdeen • Baltimore • Crystal City • Elkridge • Laurel • Rockville • Southern Maryland • Washington, DC • Online
www.ep.jhu.edu 2012–2013 Graduate Programs
12-00596
12-00596 EP Catalog 2012-13.indd 1 4/3/12 8:18 AM

Welcome to Johns Hopkins University’s
Engineering for Professionals (EP).
As part of the Whiting School of Engineering, our EP
programs draw upon Johns Hopkins’ world-renowned
strengths in research and education to provide
working engineers with academic opportunities of a
breadth and quality unparalleled in higher education.
Our comprehensive academic offerings include
15 master’s degree programs and advanced certificates
in a wide range of technical areas. And while the
Whiting School has long served the educational needs
of working engineers in the Baltimore-Washington
region, our growing online programs and on-site
academic/industry partnerships have enabled us
to expand our reach tremendously. From master’s
programs designed to meet the specific needs of
corporate clients to degree and certificate offerings that incorporate the very latest technologies and
research, we provide professional engineers from across the country and around the world with
outstanding educational programs that respond to industry’s evolving demands. We equip students
with the knowledge and skills they need for career advancement and our EP alumni can be found in
management and technical leadership positions in the public and private sectors.
EP’s reputation for academic excellence is due, in large part, to the quality of our faculty. Thanks
to our strong relationships with industry and leading private and government organizations as well
as our partnership with The Johns Hopkins University Applied Physics Laboratory, EP students
are taught by some of the nation’s most accomplished engineers, scientists, and researchers. These
professionals work at the cutting edge of their fields and know first-hand what it takes to be leaders
in today’s competitive marketplace. Our faculty members draw upon their knowledge of current
technologies, practices, and unique professional experiences to enrich our academic programs.
They balance theory with application, and provide students with a strong command of underlying
engineering principles.
We are excited to partner with the Carey Business School for three distinct dual degree programs
within our Environmental Engineering, Science, and Management program. Online course offerings
continue to grow and we now offer over 100 courses across multiple disciplines, including online
master’s degree programs in Systems Engineering, Computer Science, Environmental Planning and
Management, Environmental Engineering and Science, Information Assurance, Information Systems
Engineering, and Bioinformatics.
I invite you to learn more about EP and how a Johns Hopkins Engineering degree or advanced
certificate can help you achieve your professional goals. And, again, welcome to the Johns Hopkins
engineering community.
Sincerely,
Nicholas P. Jones
Benjamin T. Rome Dean
Whiting School of Engineering
Engineering for Professionals
Graduate Programs
Academic Year 2012–2013

2012–2013 Academic Calendar
Application Deadline: The admissions process is handled on a continuing basis.
Summer 2012 Fall 2012 Spring 2013
Important Semester Dates:
First Day of Classes May 29 September 5 January 28
Last Day of Classes August 20 December 15 May 11
Graduation Application Deadlines August 1 December 1 May 1
Holidays July 4 November 21-25 March 18-24
Registration Deadlines Summer 2012 Fall 2012 Spring 2013
Registration Opens March 22 June 21 October 25, 2012
Registration Closes May 25 August 24 January 25
Final Day to Add 2nd class meeting September 18 February 3
Final Day to Add Online Courses June 6 September 13 February 3
Withdrawal/Audit Deadline 9th class meeting November 11 April 6
Tuition Payment Deadlines* Summer 2012 Fall 2012 Spring 2013
June 12 September 19 February 11
*There will be a $150 late fee if tuition is not paid by the due date.
Whiting School Graduate Ceremony is Wednesday, May 22, 2013.

University Commencement Day is Thursday, May 23, 2013.
ii
Contact Information
Johns Hopkins Engineering for Professionals
Dorsey Student Services Center
6810 Deerpath Road, Suite 100
Elkridge, MD 21075
410-516-2300
ep.jhu.edu
General Information and Requests
Admissions/Registration (Dorsey Student Services Center). . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-2300
Education Centers
Applied Physics Lab (from Baltimore) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .443-778-6510
(from Washington). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 240-228-6510
Crystal City Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 240-228-2910
Dorsey Student Services Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-2300
Higher Education and Conference Center @ HEAT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .443-360-9200
Homewood Campus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-8000
Montgomery County Campus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 301-294-7070
Southern Maryland Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 301-737-2500
Washington, D.C. Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 202-588-0590
Student Services
Disability Services . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410-516-2270
Financial Aid (146 Garland Hall) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410-516-8028
International Office . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-1013
JH Student Assistance Program . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .443-287-7000
University Registrar (75 Garland Hall) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410-516-8083
Student Accounts (EP). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-2276
Student Accounts (Homewood) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410-516-8158
Transcripts (75 Garland Hall). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 410-516-7088
Veterans Certification (75 Garland Hall). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .410-516-7071
Online Information
Catalog . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . catalog.ep.jhu.edu
Application . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ep.jhu.edu/apply
Course Schedule . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ep.jhu.edu/schedule
Graduation Information . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ep.jhu.edu/graduation
EP Forms. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ep.jhu.edu/student-forms
Textbooks
All Locations. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ep.jhu.edu/textbooks
Information in this catalog is current as of publication in May 2012. For all updates, please refer to the online version at
catalog.ep.jhu.edu.
The university of necessity reserves the freedom to change without notice any programs, requirements, or regulations published
in this catalog. This catalog is not to be regarded as a contract. Multiple means of communication may be used by the university
for announcing changes of this nature, including, but not exclusive to, email and/or paper notice. Students are responsible for
providing current email and mailing address information to the university administrative offices.
iii
Engineering Administration
Nicholas P. Jones, Benjamin T. Rome Dean

Dexter G. Smith, Associate Dean
Priyanka Dwivedi, Director of Admissions and Student Services
Tim Jarrett, Director of Software Engineering
Mary Kelty, Instructional Technology/Distance Learning Manager
Marielle Nuzback, Senior Director of Operations
Doug Schiller, Director of Registration
Juliana Wood, External Communications and Marketing
APL Education Center

Ellen Elliott, Director
Christine Morris, Deputy Head
Tracy Gauthier, Operations Coordinator
Graduate Program Administration

James C. Spall Thomas Longstaff
Program Chair, Applied and Computational Mathematics Program Chair, Computer Science
Program Chair, Information Assurance
Eileen Haase
Program Chair, Information Systems Engineering
Program Chair, Applied Biomedical Engineering
Robert C. Cammarata
Harry K. Charles Jr.
Program Chair, Materials Science and Engineering
Program Chair, Applied Physics
Andrea Prosperetti
Michael Betenbaugh
Program Chair, Mechanical Engineering
Program Chair, Chemical and Biomolecular Engineering
Ronald R. Luman
Rachel Sangree
Program Chair, Systems Engineering
Program Chair, Civil Engineering
Joseph J. Suter
Brian K. Jennison
Program Chair, Technical Management
Program Chair, Electrical and Computer Engineering
Hedy V. Alavi
Program Chair, Environmental Engineering, Science and
Management
iv
Table of Contents
Academic and Registration Calendar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ii
Contact Information . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . iii
Engineering Administration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . iv
The Johns Hopkins Distinction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Whiting School of Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Graduate Programs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Degrees and Certificates . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Master of Science. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Master of Engineering. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Joint Degree and Dual Program. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Advanced Certificate for Post-Master’s Study. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Graduate Certificate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Non-degree Seeking Students . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Chart: Graduate Degree Offerings by Location. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Online Education at Engineering for Professionals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
What can you expect as an Online Student? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Getting Started. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Online Course Registration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Online Student Support Services. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Online Help Desk. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Student Services. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Admission Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Master’s Degree Candidate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Advanced Certificate for Post-Master’s Study Candidate. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Graduate Certificate Candidate. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Special Student . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Application Procedures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Readmission . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Admission to Other Divisions of the University. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
International Applicants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
International Credential Evaluation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
English Proficiency . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Requests to Change Program of Study. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Registration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Course Schedule. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Course Numbering System. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Course Credit. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Web Registration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Registering for Online Courses. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Late Registration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
New Applicants. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Interdivisional Registration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Course Enrollment Limits. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Course Load . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Auditors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Adding and Dropping Courses . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Textbooks. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Academic Regulations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Advisors and Program Planning. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Probation and Dismissal . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Second Master’s Degree. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Time Limitation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
v
Table of Contents
Leave of Absence. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Transfer Courses. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Graduation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Honors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Grading System. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Incompletes. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Grade Reports. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Grade Appeals. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Student Attendance. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Academic Misconduct. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
The Roles of Students and Faculty. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Violations of Academic Integrity. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Copyright Violations. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Computer Usage. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Tuition and Fees. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Tuition . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Application Fee. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Graduation Fee. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Late Tuition Payment Fee . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Transfer Credit Fee . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Fee for Removal of an Incomplete Grade. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Refund Policy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Chart: Refund Schedule. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Financial Aid and Veterans Benefits. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Definition of Full-Time, Half-Time, and Part-Time Enrollment. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Veterans Benefits. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
Facilities and Student Services. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
Student ID JCards. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
Transcripts. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
International Student Services. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
Services for Students with Disabilities. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
JH Student Assistance Program. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
Inclement Weather . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
Web-based Student Directory. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
Computers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
The Homewood Campus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Libraries. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Textbooks. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Johns Hopkins Merchandise. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Hopkins Student Union. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Security Services. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Parking. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Applied Physics Laboratory Education Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Computers. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Parking. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Montgomery County Campus. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Library. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Computers. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Cafe. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Parking. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Dorsey Student Services Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Southern Maryland Higher Education Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Washington D.C. Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Crystal City Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Higher Education and Conference Center@HEAT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Inter-Site Links. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
vi
Table of Contents
Applied and Computational Mathematics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19

Applied Biomedical Engineering. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 30
Applied Physics. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38
Bioinformatics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
Chemical and Biomolecular Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 59
Civil Engineering. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
Computer Science. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 70
Electrical and Computer Engineering. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 89
Environmental Engineering, Science, and Management. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 107
Information Assurance. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 123
Information Systems Engineering. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129
Materials Science and Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 134
Materials and Condensed Matter Option. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 139
Mechanical Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 141
Nanotechnology Option. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 148
Photonics Option. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 150
Systems Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 151
Technical Management . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 163
Telecommunications and Networking Option . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 169
Policy Statements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170
Equal Opportunity/Nondiscriminatory Policy as to Students . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170
Admissions Policy. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170
Statement Regarding the Privacy Rights of Students . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170
Americans with Disabilities Act Policy (ADA). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170
Sexual Harassment Prevention and Resolution Policy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171
University Alcohol and Drug Policy for Students. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171
Policy on Possession of Firearms on University Premises . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171
Campus Security Act Notice. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171
Photograph and Film Rights Policy. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172
Return of Title IV Funds Policy. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172
Trustees and Administration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 173
EP Advisory Council . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175
Faculty . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 176
Directions and Maps
Directions. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193
Location Map of all Facilities. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 196
Applied Physics Laboratory. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193, 197
Montgomery County Campus. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193, 198
Dorsey Student Services Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193, 199
Homewood Campus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193, 200, 201
Southern Maryland Higher Education Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 194, 202
Higher Education and Conference Center@HEAT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 194, 203
Washington D.C. Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 194, 204
Crystal City Center. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 195, 205
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 206
vii
Computer Science instructor Cheryl Resch, Applied and Computational Mathematics Program Chair Jim Spall and instruc-
tor Jacqueline Akinpelu, and Ed Scheinerman, Ph.D., Vice Dean for Education at the Whiting School of Engineering, discuss
active learning strategies for students to improve critical thinking skills and mastery of course material at the Annual Faculty
Meeting held at the Johns Hopkins Applied Physics Laboratory Kossiakoff Center in March.
Faculty learn about iPad apps that allow them to adapt to an ever-changing, and increasingly paperless, learning environment
at the Annual Faculty Meeting held at the Johns Hopkins Applied Physics Laboratory Kossiakoff Center in March.
The Johns Hopkins Distinction / Whiting School of Engineering
The Johns Hopkins Whiting School of
General
General Information
Distinction Engineering
Information
The Johns Hopkins University opened in 1876, with the The Whiting School consists of the following depart-
inauguration of its first president, Daniel Coit Gilman. ments: Applied Mathematics and Statistics, Chemical and
“What are we aiming at?” Gilman asked in his installa- Biomolecular Engineering, Civil Engineering, Computer
tion address. “The encouragement of research … and the Science, Electrical and Computer Engineering, Geography
advancement of individual scholars, who by their excellence and Environmental Engineering, Materials Science and
will advance the sciences they pursue, and the society where Engineering, Mechanical Engineering, and, in collabora-
they dwell.” tion with the School of Medicine, Biomedical Engineering.
The mission laid out by Gilman remains the Univer- Information about full-time education may be found in
sity’s mission today, summed up in a simple but powerful the Johns Hopkins University Arts and Sciences/Engineer-
restatement of Gilman’s own words: “Knowledge for the ing Undergraduate and Graduate Catalog or on the Web
world.” at www.engineering.jhu.edu. Admission information for
What Gilman created was a research university, dedi- full-time undergraduate education is available from the
cated to advancing both students’ knowledge and the state Office of Admissions, Mason Hall, 3400 N. Charles Street,
of human knowledge through research and scholarship. Homewood campus, 410-516-8171. For full-time graduate
Gilman believed that teaching and research are interdepen- education, students should contact the department in which
dent, that success in one depends on success in the other. they are interested.
A modern university, he believed, must do both well. The The University has offered part-time engineering educa-
realization of Gilman’s philosophy at Johns Hopkins, and at tion since before World War I. Over the intervening decades,
other institutions that later attracted Hopkins-trained schol- thousands of working engineers and scientists have earned
ars, revolutionized higher education in America, leading to graduate and undergraduate degrees through part-time
the research university system as it exists today. study, achieving personal and professional goals without
After more than 130 years, Johns Hopkins remains a interrupting their careers. Today, through the Johns Hop-
world leader in both teaching and research. Eminent profes- kins Engineering for Professionals program (EP), the Whit-
sors mentor top students in the arts and music, the humani- ing School continues the University’s tradition of offering
ties, the social and natural sciences, international studies, advanced engineering education to working professionals.
education, business and the health professions. Those same EP courses are continually updated for relevance,
faculty members, and their research colleagues at the Univer- addressing industry trends and the latest advances in engi-
sity’s Applied Physics Laboratory, have each year since 1979 neering and applied science fields. Classes are scheduled
won Johns Hopkins more federal research and development at convenient times during late afternoons, evenings, and
funding than any other university. Saturdays, and at a number of locations throughout the
Johns Hopkins University is accredited by the Middle Baltimore-Washington region. Also, each year EP offers an
States Commission on Higher Education and is privately increasing number of courses and degree programs online to
endowed. Nine divisions of the University grant degrees. allow professionals who cannot attend classes at our educa-
They are the Whiting School of Engineering, the Krieger tion centers the ability to advance their education.
School of Arts and Sciences, the School of Education, the
School of Medicine, the School of Nursing, the Bloomberg
School of Public Health, the Peabody Institute, the Carey
Business School, and the Paul H. Nitze School of Advanced
International Studies. The 10th division of the University is
the Applied Physics Laboratory (APL), a research institute.
1
Graduate Programs / Degrees and Certificates
Graduate Programs and applications for admission to the Master of Science in

General Information
Bioinformatics must be submitted directly to KSAS at www.

Graduate students in the Engineering for Professionals pro- bioinformatics.jhu.edu.
gram constitute one of the nation’s largest student bodies A dual program is available, jointly offered by Engi-
in continuing engineering education at the master’s degree neering for Professionals’ Environmental Planning and
level. Graduate courses are offered at eight locations and Management program and the Applied Economics program
online. Students receive individual attention from their advi- at Krieger School of Arts and Sciences Advanced Academic
sors and instructors and benefit from small classes and well- Programs (AAP). A detailed description of this program
equipped laboratory, computing, and classroom facilities. can be found under Graduate Programs, Environmental
Almost all courses are scheduled in the late afternoon or Engineering, Science, and Management program. Students
evening Monday through Friday, on Saturdays, or online, so applying to the dual degree program will download the
that students can further their education without interrupt- application and submit supporting documents and applica-
ing their careers. Graduate students may take courses at any tion fee to Advanced Academic Programs at www.advanced.
Hopkins location listed in the table at the end of this section. jhu.edu. The application will be forwarded to JHU Engi-
Please note that all courses are not offered at all locations. neering for Professionals. Each program decides on admis-
The University is accredited by the Middle States sions separately.
Commission on Higher Education, 3624 Market St., Phila- New for the 2012–2013 academic year, Engineering
delphia, Pa. 19104-2680; 215-662-5606. The Accredita- for Professionals’ Environmental Engineering, Science, and
tion Board for Engineering and Technology (ABET) is Management program offers three dual degree programs
the accrediting authority for engineering and technology with the Carey Business School. Students may pursue the
programs in the United States. Universities and colleges Master of Environmental Engineering, the Master of Sci-
may choose to have their basic (undergraduate) or advanced ence in Environmental Planning and Management, or the
(graduate) programs accredited, but not both. Nearly every Master of Science in Environmental Engineering and Sci-
engineering school, including the Whiting School, chooses ence, each combining with the Master of Business Admin-
to have its basic programs accredited by ABET. istration for three distinct dual degree programs. A detailed
description of these programs can be found under Graduate
Programs, Environmental Engineering, Science, and Man-
Degrees and agement program. Students applying to any of the three dual
degree programs will download the application and submit
Certificates supporting documents and application fee to Engineering

for Professionals at ep.jhu.edu. The completed application
The Johns Hopkins University offers a variety of degrees and will be forwarded to the admissions office at the Carey Busi-
certificates to students in the Whiting School of Engineer- ness School. Each program decides on admissions separately.
ing. Requirements for each discipline are detailed in the
individual program listings in this catalog. Advanced Certificate for Post-Master’s Study
This certificate is awarded upon completion of six courses
Master of Science beyond the master’s degree in the same or a closely related
Programs are offered in applied and computational math- discipline area.
ematics; applied biomedical engineering; applied physics;
computer science; electrical and computer engineering; Graduate Certificate
environmental engineering, science, and management; This certificate is awarded upon completion of a select num-
information assurance; information systems engineering; ber of courses of graduate study within one of the master’s
systems engineering; and technical management. degree discipline areas.
Master of Engineering Non-Degree-Seeking Students

Graduate degree programs are offered in chemical and Students who wish to enroll in courses, but are not inter-
biomolecular engineering, civil engineering, environmen- ested in pursuing a degree or certificate, may enroll as Special
tal engineering, materials science and engineering, and Students.
mechanical engineering.
Joint Degree and Dual Program

A joint degree in bioinformatics is offered by Engineering
for Professionals and the Krieger School of Arts and Sci-
ences Advanced Academic Programs. The description of
this degree can be found under Graduate Programs, Bioin-
formatics program. The administration is handled by KSAS
2
Graduate Programs—Offerings by Location
Programs Locations Online
General Information
• APL • Higher Education and Select courses available
Applied and Computational • Dorsey Center Conference Center @ HEAT
Mathematics • Montgomery County Campus • Southern Maryland Higher
Education Center
• APL Option not available
Applied Biomedical
• Dorsey Center
Engineering
• Homewood Campus
• APL Option not available
Applied Physics
• Dorsey Center
• APL Option available
Bioinformatics
• Montgomery County Campus
Chemical and Biomolecular • Homewood Campus Select courses available
Engineering
• Dorsey Center Option not available
Civil Engineering
• Homewood Campus
• APL • Montgomery County Campus Option available
Computer Science
• Dorsey Center
Electrical and Computer • APL • Montgomery County Campus Select courses available
Engineering • Dorsey Center
Environmental Engineering,
• Dorsey Center • Washington, D.C. Center
Science, and Management
• Homewood Campus
Information Assurance
• Dorsey Center
Information Systems • APL • Montgomery County Campus Option available
Engineering • Dorsey Center
Materials Science and • APL • Dorsey Center Option not available
Engineering • Homewood Campus
• APL • Homewood Campus Option not available
Mechanical Engineering
• Dorsey Center
• Crystal City Center • Southern Maryland Higher
Systems Engineering • Dorsey Center Education Center
• Higher Education and
• APL • S outhern Maryland Higher Select courses available
Technical Management • Dorsey Center Education Center
• Montgomery County Campus
NOTE: Graduate students may take courses at any Hopkins location listed in the table. Please note that not all courses are offered
at all locations. Locations offering the program are indicated in bold, with the remaining locations offering selected courses.
The Option available notation indicates that the program meets the minimum requirement for completing all courses online; it
does not mean that all courses within the program are available online.
Education Centers
 Applied Physics Labora-  Dorsey Student Services  H
omewood Campus,  S outhern Maryland
tory (APL), Laurel, MD Center, Elkridge, MD Baltimore, MD Higher Education Center,
 Crystal City Center,  Higher Education and  M
ontgomery County California, MD
Arlington, VA Conference Center @ Campus, Rockville, MD  Washington, D.C. Center,
HEAT, Aberdeen, MD Washington, D.C.
See Directions and Maps on page 175.
3
Online Education at Engineering for Professionals
Online Education at • Technical support that is provided 24/7

General Information
• A standard academic term
Engineering for • A full range of online student services including access to

library resources, online textbook purchasing, academic
Professionals advising, registration, and student records
Johns Hopkins Engineering for Professionals has been Getting Started

delivering instruction online since 2001 and currently offers The online learning environment is different from the
seven of its on-site programs entirely online: bioinformatics traditional classroom setting. Before enrolling in an online
(jointly offered with the Krieger School of Arts and Sciences’ course or program, students need to consider the differences
Advanced Academic Programs), computer science, environ- between learning online and learning in a classroom. Online
mental engineering and science, environmental planning and courses require more independent learning, strong self-
management, information assurance, information systems discipline, and effective time-management skills. Because of
engineering, and systems engineering. Students also have the the asynchronous nature of online communication, students
option to pursue online graduate certificates and advanced need to adjust to not receiving instant responses to ques-
graduate certificates within these disciplines. EP plans to tions or feedback on assignments. Often students enroll in
grow its online program offerings in the areas of applied and online courses simply because of the convenience of being
computational mathematics, electrical and computer engi- able to access their courses anytime and anywhere, assum-
neering, and technical management. In addition, many of ing the online courses will be easier than on-site classes;
our on-site programs include online course offerings. however, this is not the case. As an online learner, you will
The online courses follow the normal academic sched- be required to take on much more responsibility for what
ule for each term—14 weeks for the fall and spring terms you get out of the course. You will need to make changes to
and 12 weeks for the summer term. The format of the your schedule and commit time to regularly participating in
online courses is similar to that used in on-site courses: the online course, just as you would if you were enrolled in
enrolled students proceed through the course as a group, a classroom course.
communicating online with their instructor and each other To help students make the transition from on-site
and completing weekly assignments or other course-related learning to online learning, EP has created an online orienta-
projects. The biggest differences between online and on-site tion course for first-time online students. First-time online
courses have to do with how students access the courses and students are given access to the orientation before the start
how they interact with the instructors, other students, and of the semester and are strongly encouraged to complete it
course content. Students access their online courses via the before starting their online course(s). The orientation iden-
Internet through the course management system. Students tifies and addresses technical access issues, introduces the
must have a working email address and reliable and easily student to the course management system (Blackboard) and
accessible Internet access in order to complete coursework other online learning tools, and provides tips on how to be
successfully. There may be additional technical requirements a successful online learner.
for some courses, such as specific software, players, or plug-
ins or access to a fax machine Technical Requirements
In early spring and continuing through summer 2012, Blackboard System Requirements
Engineering for Professionals will be migrating course JHU Engineering for Professionals (EP) uses Black-
management systems for all online courses from Sakai to board as the platform for delivering online courses.
Blackboard. For information on each of the respective course This platform is also used by instructors to supplement
management platforms used for course delivery, please refer their in-class courses. Blackboard is a web-based appli-
to the links provided below: cation capable of supporting teaching and learn-
• Sakai: ep.jhu.edu/helpdesk/sakaiaccessibility ing, project collaboration, and group interaction.
• Blackboard: blackboard.com/Platforms/Learn/Resources/ Please refer to help.sset.jhu.edu/display/Bb/Supported+
Accessibility.aspx Browsers+and+Operating+Systems for Blackboard’s techni-
cal requirements.
What Can You Expect as an Online Student?
• Courses that deliver the same content, rigor, and educa- Required Software
tional outcomes as their corresponding on-site courses The list below represents the most common required soft-
• A rich, interactive learning experience that incorporates a ware used to support online courses and courses supple-
variety of approaches to appeal to different learning styles mented with Blackboard.
• World-class faculty who are working professionals from Please note: Your course may or may not use all the software
well-known government and private organizations listed. Your course may also require additional software not
• Courses that are accessible anytime and anywhere listed here which will be detailed in your course syllabus.
4
Online Education at Engineering for Professionals
Adobe Connect If you have any questions regarding these technical require-
General Information
Your course instructor may elect to conduct real-time, vir- ments, please contact us at [email protected].
tual office hours via Adobe Connect. At the beginning of
the semester you may want to check to make sure your com- Online Course Registration
puter is properly configured to connect to Adobe Connect. Online course registration adheres to the same schedule
To perform a connection test for your computer go to as on-site courses. Enrollment is granted on a first-come,
connect.johnshopkins.edu and select Connection Test. first-served basis, and new and returning online students are
strongly encouraged to register early. Online course enroll-
For more on Adobe Connect, please see the Adobe Connect ments are limited to 20 per section. Additional sections of
Information page. online courses are added on the basis of student waitlists and
If you have any trouble connecting to an Adobe Connect instructor availability.
meeting, please contact the EP Online Help Desk. The deadline for adding online courses is a week after
the first day of classes each term, which is earlier than the
Video Player Plugins deadline for adding conventional courses. See the Academic
Many of the online courses include video recordings of and Registration Calendar for exact dates for each term.
the course lectures. In order to open and view these video
recordings you will need either the Adobe Flash Player Online Student Support Services
plugin and/or the Microsoft Silverlight plugin. EP makes every effort to provide online students access to
For Adobe Flash—get.adobe.com/flashplayer. a full range of services and resources comparable to those
available to students taking on-site courses. Online students
For Microsoft Silverlight—www.microsoft.com/getsilverlight.
can register, pay their tuition, receive academic advising,
Office Software purchase course textbooks, access JHU library holdings,
You may be required to use word processing and spreadsheet view transcripts, and access grades and various other aca-
applications for your course work. You may use Microsoft demic services all online. Once admitted, students gain
Office, or the open source alternative, OpenOffice.org. access to the Johns Hopkins portal site, myJohnsHopkins,
which provides quick access to many of these services.
To download OpenOffice go to download.openoffice.org/
other.html.
Online Help Desk
PDF Viewer EP maintains a 24/7 Online Help Desk to assist online
students with any problems they may experience with the
You will need a PDF viewer to view PDF files in your course. course management system (Blackboard) or other tools
To download free Adobe PDF viewer software, go to www. supporting online instruction. The EP Online Help Desk
adobe.com/products/acrobat/readstep.html. can be reached at (866) 311-6658 or by visiting ep.jhu.edu/
helpdesk. Students experiencing problems with their JHED
RSS Feed Reader for Podcasts ID or password can contact the JHU IT Help Desk at (410)
Your course may use podcasts to provide you with a more 516-HELP (4357).
mobile method of viewing or listening to lectures, videos, or
introductions to course content. Student Services
You will need an RSS feed reader to subscribe to and
access podcasts. iTunes is preferred for EP podcasts: www. Services for Students with Disabilities
apple.com/itunes/download/. Students with disabilities should refer to Services for Student
When downloading iTunes, select the version that cor- with Disabilities. For questions or concerns regarding Uni-
responds with your operating system and if you do not want versity-wide disability issues, contact the Office of Student
to put in your email address, simply uncheck the two boxes Disability Services at web.jhu.edu/disabilities/index.html.
above the text box.
Zip Software
You will also need software for “zipping” and “unzipping”
(compressing and uncompressing) files. Two popular share-
ware “zip” programs can be downloaded from the sites listed:
For Windows—WinZip at www.winzip.com.
For Macintosh—ZipIt at www.maczipit.com/download.
html.
5
Admission Requirements
Admission programs offer a certificate of post-master’s study. This pro-

General Information
gram is intended to add depth and/or breadth in the disci-
Requirements
pline of the student’s master’s degree, or a closely related one.
The program consists of six courses planned in consul-
tation with an advisor. In some cases students may substitute
Johns Hopkins Engineering for Professionals encourages independent projects for up to two of the courses.
all students who have serious academic interests to apply.
The general admission requirement for the advanced
Qualified students may structure their course work to
certificate program is that candidates must have completed
pursue a specific degree or certificate program, or they may
a master’s degree in an engineering or science discipline.
take courses under the Special Student (i.e., non-degree-
Academic credentials must be submitted for admission
seeking) designation if they have met program and course
committee review. After acceptance, each student is assigned
prerequisites. An applicant may be admitted in one of four
an advisor with whom he or she jointly designs a program
categories:
tailored to individual educational objectives.
1. Master’s Degree candidate Students must complete the Advanced Certificate for
2. Advanced Certificate for Post-Master’s Study candidate Post-Master’s Study within three years of the first enroll-
3. Graduate Certificate candidate ment in the program. Only grades of B- or above can count
4. Special Student toward the Advanced Certificate for Post-Master’s Study.
Courses taken for the Advanced Certificate for Post-
An applicant must meet the general admission requirements Master’s Study may be counted toward a master’s degree
appropriate for all graduate study and the specific admis- with advisor approval.
sion requirements for the desired program. Note that these
requirements represent minimum standards for admission; Graduate Certificate Candidates
the final decision on an applicants’ suitability for a given The graduate certificate is offered in a select number of
program is made by the admissions committee for that degree disciplines and is directed toward students who may
program. The general application procedures and admission not need a master’s degree, may not have the opportunity to
requirements are stated below. Please refer to the individual pursue the entire master’s degree, or may wish to focus their
program sections for additional specific requirements. studies on a set of courses in a specific subject area.
Applicants who have been dismissed or suspended by The certificate generally consists of five to six courses
any college or university, including Johns Hopkins, within (program dependent). The program area of study specifies
the past four years are not eligible for admission. the selection and number of applicable courses. If, in the
future, the student decides to pursue a full master’s degree,
Master’s Degree Candidates all courses will apply provided they meet the program
The program consists of 10 courses planned in consultation requirements and fall within the five-year limit.
with an advisor. Note that the joint M.S. in Bioinformatics Students must meet the general master’s degree admis-
degree requires 11 courses. General admission requirements sion requirements, as well as the specific requirements of
for master’s degree candidates and others seeking graduate the desired program. Academic credentials must be submit-
status are as follows: applicants must be in the last semester ted for Admission Committee review. After acceptance,
of undergraduate study or hold a bachelor’s degree from a each student is assigned an advisor with whom he or she
regionally accredited college or university. Applicants must jointly designs a program tailored to individual educational
have earned grade point averages of at least 3.0 on a 4.0 objectives.
scale (B or above) in the latter half of their studies or hold Students must complete the Graduate Certificate with-
graduate degrees in technical disciplines. In considering in three years of first enrolling in the program. Only grades
applications to the Systems Engineering program, both aca- of B or above can count toward the Graduate Certificate.
demic record and experience will be considered and, at the Courses taken for the Graduate Certificate may be
discretion of the Admissions Committee, years and quality counted toward a master’s degree with advisor approval.
of experience may compensate for a GPA that is just short
of the required 3.0. Special Students
Students must complete the master’s degree within five The general requirement for admission as a Special Student
years from the start of the first course in the student’s pro- (i.e., non-degree-seeking) is that the applicant must hold
gram. Only one grade of C can count toward the master’s a bachelor’s degree from a regionally accredited college or
degree. university or be in the last semester of undergraduate study.
Applicants must have earned a grade point average of at least
Advanced Certificate for Post-Master’s 3.0 on a 4.0 (B or above) scale in the latter half of their stud-
Study Candidates ies or hold graduate degrees in relevant technical disciplines
To accommodate students who wish to pursue studies and meet admission prerequisites for the program in which
beyond the master’s degree, many of the disciplines in the they have applied to be a Special Student.
6
Visiting graduate students are Special Students who are International Applicants
General Information
actively enrolled in a graduate program at another university The United States Immigration and Naturalization Service
and are registering for EP courses. They must be in good regulations require students with F-1 visas to be enrolled
academic and disciplinary standing. full-time in a degree-seeking program.
All Special Students must satisfy program prerequisites As EP does not provide on-campus housing or financial
as well as specific course prerequisites in order to enroll. support for graduate international students, applicants need-
Courses taken while a Special Student do not neces- ing student F-1 visas must be able to present documented
sarily count toward fulfillment of degree requirements if evidence of available financial support to cover annual living
the student is subsequently accepted as a degree candidate. and educational expenses while studying at JHU. Applicants
Determinations on course applicability toward a degree are who are in the United States on student visas should consult
made on an individual basis. with their current school’s international office for informa-
tion on how to transfer to another approved school.
Application Procedures EP is not authorized to certify the I-20 form required
To be considered for admission to a degree or certificate pro- for a student visa. Those holding student visas granted by
gram or to take courses as Special Students, applicants must other universities are not allowed to register for classes and
submit a formal application, a nonrefundable $75 applica- cannot be accepted as degree candidates or Special Students.
tion fee made payable to Johns Hopkins University, official For visa information, contact the JHU Office of Interna-
transcripts of all college studies, and any other documents tional Student and Scholar Services, jhu.edu/isss.
specified by particular programs. Additional documents may
be required when applying to joint and/or dual degree pro- International Credential Evaluation
grams. If a Special Student applicant later decides to apply Applicants who hold degrees or have earned credits from
for a degree, a letter of intent is required. The application fee non-U.S. institutions must have their academic records
is waived for alumni of the Whiting School of Engineering. evaluated by World Education Services, Inc. before they
Generally, EP recommends that students apply for admis- can be considered for graduate or Special Student status
sion in the semester prior to their planned enrollment. or admission to a degree/certificate program. In addition
The application is available online at ep.jhu.edu/apply. to submitting official records to EP, applicants must make
Complete instructions are available on the web site. arrangements with the credential evaluation agency listed
An application for admission is not reviewed by an below, for an evaluation of the degree, an assessment of
admissions committee until official transcripts from all the overall grade point average, and a course-by-course
colleges attended and required supporting documents are evaluation.
received. Please note that official transcripts must be received
in the institution’s sealed envelope, or sent electronically via World Education Services, Inc.
the Scrip-Safe network. Failure to provide all official tran- P.O. Box 745
scripts, supporting documents, and application fee will delay Old Chelsea Station
review of the application. Please allow four to six weeks for New York, NY 10113-0745
application processing once all materials have been received. Telephone: 212-966-6311
Fax: 212-966-6395
Readmission Email: [email protected]
An application is held on file for one year from the date of
its receipt. Applicants who fail to submit required materials English Proficiency
within this period must reapply and submit another applica- The Johns Hopkins University requires students to have
tion and fee. English proficiency for their course of study. All interna-
Applicants must satisfy admission requirements in force tional applicants must submit proof of their proficiency
at the time of reapplication. Admitted students may defer in English via the Test of English as a Foreign Language
the start of their studies for up to one year following admis- (TOEFL) or the International English Language Testing
sion. After one year of inactivity, the student must reapply. System (IELTS) before they can be offered admission.
Applicants who have been dismissed or suspended by A minimum score of 600 (paper-based), 250 (com-
any college or university, including Johns Hopkins, within puter-based), or 100 (Internet-based) is required on the
the past four years are not eligible for admission. TOEFL; for the IELTS, an overall band score of at least 7.0
is required. The EP admissions office requires official copies
Admission to Other Divisions of the University of all results.
Any student who wishes to transfer to another school in the
University or to a full-time engineering program must apply Requests to Change Program of Study
to the appropriate department or to the Office of Admis- A student who wishes to change his/her status (e.g., from
sions. Admission to an EP program establishes no claim or Special Student to master’s degree candidate) or field of
priority for admission to other divisions of the University. study (e.g., from technical management to systems engineer-
7
Registration
ing, or from the general computer science program to the Course Credit
General Information
telecommunications and networking option) must submit All courses 400-level and above earn 3 credit hours.
a written request to the EP office. The student must meet all
the admission requirements of the new program. Web Registration
Advance registration takes place three times a year: prior to
Registration
the fall semester, the spring semester, and the summer term.
All students are encouraged to use web registration.
Web registration is available by logging onto ep.jhu.edu/
Before registering for any engineering classes, each student register and following appropriate link. Students must
must apply as a degree or certificate candidate, or as a Special establish a JHED account in order to use web registration;
Student, and must submit appropriate application materials instructions are available on the opening page.
for review. Application procedures are found in the Admis-
sion Requirements section. Applications are accepted on a Registering for Online Courses
continuing basis.
Online course registration adheres to the same schedule
Payment of tuition is due at the specified deadline listed followed by on-site courses. Enrollment is granted on a
in the academic calendar. Payment may be made by check, first-come, first-served basis, and new and returning online
credit card, tuition remission, or company contract accom- students are strongly encouraged to register early. Online
panied by purchase order. EP does not defer payment for course enrollments are limited to 20 per section. Additional
companies providing tuition reimbursement at the end of sections of online courses are added on the basis of student
the term. In this instance, students must pay tuition them- waitlists and instructor availability.
selves and be reimbursed by their employer. If payment is The deadline for adding online courses is a week after
not made by the deadline date, a late payment fee of $150 the first day of classes each term, which is earlier than the
will be incurred. deadline for adding conventional courses. See the Academic
If you have registered and have not paid your balance, and Registration Calendar for exact dates for each term.
an email statement will be sent to you on the 16th of each Online course access information will be sent to your
month with the balance due the University. This is not a JHU email account. All JHU students are required to activate
bill. This is a reminder of the debt owed to the University their Outlook Live @ Hopkins email account to receive all
and is a reflection of your account status at the time of the official communications including class assignments, billing
email. Changes in circumstances may have an effect on the information, emergency notifications, and other important
amount that you are responsible to pay, for instance, adding items. Directions to set up your account can be found here
or dropping courses, late registration, or late payment fees. it.johnshopkins.edu/services/email/outlookliveathopkins.
Students are not permitted to register if there are
unpaid bills from a previous term. Late Registration
Students may register after the beginning of a term if neces-
Course Schedule sary. However, students enrolling in their first EP online
The EP course schedule, which lists the day, time, location, course must be registered no later than a week and a half
and instructor for each course, is available on the web at prior to the first day of classes in order to attend a manda-
ep.jhu.edu/schedule prior to each registration period. All tory online orientation prior to the start of the term. The
students who have been enrolled in courses during the deadline for adding online courses is a week after the first
previous year will receive notification of the web posting day of classes each term, which is earlier than the deadline
of the course schedule. All relevant registration forms and for conventional classes. See the Registration Deadlines sec-
deadlines can be found on the EP website. tion of the Facilities and Student Services page for a detailed
description of the orientation and student participation
Course Numbering System requirements. Although there is no fee for late registration,
All Whiting School of Engineering courses are numbered in students who delay registering until these times may find
the form 605.402, where course selection severely restricted. Late registrations may
605 indicates the program—in this example, be faxed to 410-579-8049.
Computer Science
402 indicates the course number—in this example, New Applicants
Software Analysis and Design An applicant who has not received an admission decision
prior to the start of the semester must attend an advising
Courses with a zero before the first decimal point—e.g. session. Dates of advising sessions are listed on the academic
600.439—are daytime offerings of the Whiting School calendar. Advising sessions are scheduled just prior to the
departments. start of each semester to give applicants the opportunity
Courses numbered xxx.1xx, xxx.2xx, and xxx.3xx are to meet with an advisor to discuss the applicant’s qualifica-
undergraduate level and will not count for graduate credit. tions for the program. Depending upon prior course work
8
Registration / Academic Regulations
taken, the applicant may be approved to register for a class tion to the instructor does not constitute dropping a course.
General Information
before a formal offer of admission is received. If the student Students who stop attending a course without completing
is subsequently accepted to a degree or certificate program, and submitting the drop form will receive an F grade. The
the program committee will determine whether courses refund policy pertaining to dropped courses is described on
taken prior to admission may be counted in fulfillment of the Tuition and Fees page.
degree requirements. Please note that approval to take a
course prior to receipt of an admission decision does not Textbooks
guarantee acceptance into the program. Students who have For textbook information, visit ep.jhu.edu/textbooks.
been granted approval to take a course before receiving an
Academic Regulations
admissions decision must adhere to the published refund
schedule. Refund exceptions will not be granted if the stu-
dent is denied admission to the program.
Following are the general requirements governing study
in the Engineering for Professionals program at Johns
Interdivisional Registration
Hopkins. Students are expected to be familiar with these
With approval of their advisors, students may take courses
requirements and with the specific regulations set forth in
in the full-time programs of the Whiting School or in other
the sections relevant to particular programs of study.
divisions of the University. Registration for these classes
Requirements for degree programs and certificate
should be submitted on the EP registration form. Please
programs described in this catalog may change from time
note that tuition rates vary by division.
to time. When this occurs, students may fulfill either the
Students in other divisions of Johns Hopkins may reg-
requirements in force at the time of admission or those in
ister for EP courses, subject to the regulations of their home
force at the time of graduation.
divisions and availability of space. The form requesting reg-
istration is available at ep.jhu.edu/student-forms.
Advisors and Program Planning
Students are assigned an advisor when accepted. In addition,
Course Enrollment Limits
students in most master’s degree and certificate programs are
In order to foster high-quality faculty-student interaction,
required to submit a program planning form for their advi-
all courses have enrollment limits. Although every effort is
sor’s approval. The program planning form provides students
made to offer additional sections of oversubscribed courses,
an opportunity to structure their course work according to
this is not always possible.
their educational objectives and to meet degree require-
Students may ask to be placed on waiting lists if their
ments. Submission of the form confirms the student’s accep-
desired courses are filled or they may indicate alternate
tance of admission and his or her intention to begin study.
course selections.
Courses that deviate from the program plan and have not
The University reserves the right to change instructors been approved by an adviser may not count toward degree
or to cancel any course with insufficient enrollment or for requirements. The program planning form may be accessed
reasons beyond the control of the University. on the EP website by clicking “forms” from the homepage.
Students in programs that do not require program
Course Load planning forms are urged to consult their adviser prior to
Students who are employed full-time are advised not to take registration for courses.
more than two courses per term without written permission If a newly admitted student fails to return the program
from their employer. planning form when requested, it is assumed that the stu-
dent does not wish to enter the program at that time. If the
Auditors form is returned but the student fails to enroll within one
Students may register as auditors with the approval of the year, it is necessary to reapply.
appropriate program advisor. Although regular attendance is
expected of auditors, they are exempt from quizzes, exami-
nations, and other assigned work, and they receive no credit Academic Standing
for the course. Students who are enrolled for credit but The University reserves the right to exclude at any time
wish to become auditors must submit the “add/drop” form a student whose academic standing or general conduct is
before the deadline listed for each term in the Academic and deemed unsatisfactory.
Registration Calendar. There is no reduction in fees when
Master’s Degree Candidates
auditing a course.
Only one grade of C may be counted toward the master’s
degree.
Adding and Dropping Courses
Courses may be added or dropped online at ep.jhu.edu/ Academic Probation—Any student receiving either one
student-forms. Deadlines for completing this procedure are grade of F or two grades of C during their program of study
given in the Academic and Registration Calendar. Notifica- will be placed on academic probation. Students placed on
9
probation are permitted to retake any graduate course in period, which begins with the start of the first course in the
General Information
which they have earned a grade of C or below. If a grade of student’s program:

B or above is earned in the repeated course, the probationary • Master’s degree – 5 years
status will be removed. Please note that all courses are not • Advanced Certificate – 3 years
offered every term. Students on probation who wish to retake
a course will remain on probation until the course is offered • Graduate Certificate – 3 years
again and completed with a grade of A or B. If an additional If necessary, a request for an extension, stating the extenuat-
grade below B is received before the course is repeated and ing circumstances, should be submitted in writing to the
successfully completed, the student will be dismissed. relevant program committee at least one semester before the
There are circumstances described below where students student otherwise would be expected to graduate.
will not be placed on probation but will be immediately
dismissed from the program. Leave of Absence
Academic Dismissal—The following are causes for dis- Students who do not plan to enroll in classes for a period
missal from the program: of one year or more must notify the EP admissions office in
writing and request a leave of absence for a specified period
• Students already on probation who receive an additional
of time. The appropriate program chair will make the deci-
grade of C or below
sion to approve or not approve the request. Students who are
• Students receiving a grade of C and a subsequent F granted a leave of absence must resume their studies at the
• Students receiving three grades of C end of the allotted leave time. If warranted, the time permit-
• Students receiving two grades of F ted to complete degree requirements will be extended by the
• Students receiving grades of F and C in the same term length of time granted for the leave of absence.
Students who do not resume their studies after a leave
Applicants who have been dismissed or suspended by any of absence has expired, or who have not enrolled for more
college or university, including Johns Hopkins, within the than one year without having requested a leave of absence
past four years are not eligible for admission. will assume the status of a student who has withdrawn from
the program. Such students must reapply, pay the $75 appli-
Graduate Certificate or Advanced Certificate for cation fee, and are subject to the admission requirements in
Post-Master’s Study force at the date of the new application. Acceptance is not
No grade of C can be counted toward a graduate certificate guaranteed even for students previously admitted. Courses
or advanced certificate for post-master’s study. The above taken prior to the interruption of studies will not count
policy for probation and dismissal will apply. toward requirements if they are not completed within the
Special Students time allowed for degree completion.
The above policy for probation and dismissal will apply.
Transferability of Courses
Second Master’s Degree Courses successfully completed at Johns Hopkins Engineer-
After receiving a master’s degree from the programs, stu- ing for Professionals may be transferred to other institutions.
dents may continue their graduate education in a second Transferability is solely at the discretion of the accepting
field if the appropriate prerequisites of the new program institution.
are fulfilled.
To receive a second master’s degree, all requirements for Transfer Courses
the second program must be satisfied. If the following con- Requests to transfer courses from another institution toward
ditions are met, up to two courses taken as part of the first the master’s degree will be considered on an individual basis.
degree may be applied toward requirements of the second: A maximum of two courses may be accepted for transfer to a
master’s degree or one course to a graduate or advanced cer-
• The course(s) must satisfy the requirements of the second
tificate with prior approval of the appropriate program chair.
degree.
No request will be considered for courses taken more than
• The student’s advisor must approve the course(s) as five years prior to the start of the program. Courses must be
appropriate to the plan of study. graduate level, not previously applied toward an awarded
• The course(s) must fall within the five-year limit for the degree, and directly applicable to the student’s program of
second degree; i.e., completion of the second degree study at EP. Requests should be submitted in writing to the
must fall within five years from the date of the first class admissions office at the Dorsey Student Services Center.
counted toward that degree. Please include a course description. An official transcript
showing the course to be transferred is required. To be
Time Limitation official, the transcript must be received by the admissions
To be counted toward the degree or certificate, all course office at the Dorsey Student Services Center in an institu-
work in the program must be completed within a specified tion’s sealed envelope. Requests to transfer courses cannot be
10
processed if the transcript is not official. The fee for transfer Grading System
General Information
is $315 per course. The following grades are used for the courses: A+, A, A-
After being accepted into an EP program of study, stu- (excellent), B+, B, B- (good), C (unsatisfactory), F (failure),
dents may not take classes at another institution for transfer I (incomplete), W (official withdrawal), and AU (audit). The
back to their EP program. Courses successfully completed last two are not assigned by instructors.
at EP may be accepted for transfer credit at other institu- A grade of F indicates the student’s failure to complete
tions, but such transferability is solely at the discretion of or comprehend the course work. A course for which an
the accepting institution. unsatisfactory grade (C or F) has been received may be
retaken. The original grade is replaced with an R. If the failed
Graduation course includes a laboratory, both the lecture and laboratory
Students who expect to receive a degree or certificate must work must be retaken unless the instructor indicates other-
submit an application for graduation. The graduation wise. A grade of W is issued to those who have dropped the
application should be submitted prior to the final term in course after the refund period (the sixth class meeting for
which degree requirements will be completed. Instructions on-site courses), but before the drop deadline.
for completing the graduation application can be found by The transcript is part of the student’s permanent record
logging into ISIS and clicking on your Program of Study. at the university. No grade may be changed except to correct
Students who are planning to graduate should complete an error, to replace an incomplete with a grade, or to replace
all course work on time and should not request to receive the a grade with an R.
grade of I (Incomplete) during their final semester. The Whiting School assumes that students possess
Approximately two months after the semester begins, acceptable written command of the English language. It is
students who have submitted the application for graduation proper for faculty to consider writing quality when assign-
receive a preliminary letter stating their names have been ing grades.
placed on the tentative graduation list for the semester in
which they anticipate completing their degree requirements. Incompletes
The WSE Graduate Committee meets three times A grade of Incomplete (I) is assigned when a student fails to
each year to review candidates for graduation and to make complete a course on time for valid reasons, usually under
recommendations to the University president for com- circumstances beyond his/her control. A $60 change of
mencement. Students completing all requirements at the grade fee must be mailed to the EP Dorsey Student Services
end of the summer term are reviewed by the committee in Center office before the final grade will be posted on the
late October; those finishing at the end of the fall semester student’s transcript (except for grades of F).
are reviewed in late February; and those finishing at the end Conditions for resolving an incomplete are established
of the spring semester are reviewed in May. After the WSE by the instructor. A final grade must be submitted to the
Graduate Committee meets, students on the graduation list Registrar within four weeks after the start of the following
receive a letter confirming the committee’s action. Degrees term. A grade of F will be assigned if the incomplete work
are conferred three times a year, after spring, summer, and is not submitted by the deadline. For academic year 2011-
fall semesters. 2012, the dates by which final grades for incomplete work
Commencement information is sent the first week in must be resolved are:
March. To receive their diploma, students must pay all stu-
Summer semester September 28
dent accounts in full and resolve all outstanding charges of
Fall semester February 22
misconduct and violations of academic integrity. Students
Spring semester June 28
will receive an e-bill notification in the spring from Student
Accounts. The e-bill will be sent to the student’s preferred Students who expect to complete degree requirements, but
email account. For graduation fees, see the Tuition and Fees have an incomplete, are not certified for graduation until the
page. end of the following term.
Johns Hopkins University diplomas indicate the school
(e.g., Whiting School of Engineering), degree, and major Grade Reports
(e.g., Master of Science Computer Science) without identi- At the midpoint of each term, instructors are requested to
fying the student’s concentration or option. provide a list of students whose work at that time is unsatis-
factory. Students are notified by the EP Student Services staff
Honors if their names are reported so they can take corrective action.
EP students will graduate with honors if they have earned These early reports are for the benefit of students and their
an A in all courses taken between admission and gradua- advisors and are not part of the permanent record.
tion from the degree program. Any other grade except a Grades are available online at isis.jhu.edu/sswf. These
withdrawal or audit will disqualify students from receiving reports cannot be requested by telephone or personal inqui-
honors. The designation “Honors” will appear on student ry. Students with questions regarding their grade reports or
transcripts. who want their transcripts sent to other institutions should
11
make arrangements with the Office of the Registrar, 410- tion papers and teaching laboratories. It is the duty of faculty
Information
General Information
516-7088 or jhu.edu/registrar. to report suspected violations of academic integrity to the

appropriate program chair. It is the responsibility of each
Grade Appeals student to report to the instructor any suspected violations
Student concerns regarding grades must be first discussed of academic integrity.
thoroughly with the instructor. If the student and the
General
instructor are unable to reach agreement, the student may Violations of Academic Integrity
appeal in writing the instructor’s decision to the appropriate After reviewing the circumstances of any suspected violation
program chair, and, finally, to the associate dean. At each of academic integrity to determine if a violation may have
review level, evaluation criteria will be limited to: (1) verifi- occurred, a program chair will promptly report (in writing)
cation that there was not an error in recording the grade and the suspected violation to the associate dean. Supporting
(2) verification that the grade was determined on the basis evidence (e.g., copies of examination papers) should accom-
of considered academic judgment. Grade appeals must be pany the report. The associate dean will resolve the issues fol-
initiated within one semester after completing the course lowing the procedures set forth on the website noted above.
in question.
Copyright Violations
Student Attendance Copying, downloading, or distributing music, videos, soft-
Students are expected to regularly attend all courses in which ware, games or other copyrighted materials without permis-
they are enrolled. Although EP and the University have no sion of the owner violates both federal law and University
specific rules governing absences, the course instructor may policy, and will be submitted for disciplinary action.
announce certain attendance requirements. It is the student’s Original works fixed in any tangible medium of expres-
responsibility to be aware of those requirements. Students sion, which includes storage within computers, are copy-
who know they will be absent from class, especially for an righted to the author from the moment of creation. No
extended period of time, should notify the instructor as far notice of copyright is required. Except under limited cir-
in advance as possible. It is the student’s responsibility to cumstances for limited purposes, you may not make or dis-
discuss missed assignments and exams with the instructor. tribute copies of material belonging to others without their
If an instructor is unavoidably late for class, the site office permission. Unless a site specifically grants you permission
will attempt to notify students and tell them to wait, if it to download and copy material from the site, you should
is practical. If an instructor is unable to meet a class, every assume that you cannot do so. You should also assume that
attempt will be made by EP staff to inform students of the all person-to-person sharing of music, programs, videos, and
cancellation, a makeup time for the class (if available), and software is a violation of copyright. Copyright violations will
information regarding assignments. If an instructor informs be submitted for disciplinary action.
the EP office of a class cancellation, with enough lead time,
phone calls will be made to students. Computer Usage
Because Johns Hopkins University Office of Information
Academic Misconduct Technology updates its policies frequently, please visit the
This section summarizes the policy on academic misconduct JHU IT website at it.jhu.edu/ for the latest information on
described at engineering.jhu.edu/include/content/pdf- usage and security. The following includes key elements of
word/misconduct-policy.pdf. the policy, which is posted in all EP computer labs:
Acceptable use of IT resources is use that is consistent
The Roles of Students and Faculty with Johns Hopkins’ missions of education, research, ser-
Johns Hopkins faculty and students have a joint responsibil- vice, and patient care, and is legal, ethical, and honest; it
ity to maintain the academic integrity of the University in must respect intellectual property, ownership of data, system
all respects. Students must conduct themselves in a manner security mechanisms, and individuals’ rights to privacy and
appropriate to the University’s mission as an institution of freedom from intimidation, harassment, and annoyance; it
higher education. Students are obligated to refrain from must show consideration in the consumption and utilization
acts that they know, or under the circumstances have of IT resources; and it must not jeopardize Johns Hopkins’
reason to know, impair the academic integrity of the Uni- not-for-profit status. Incidental personal use of IT resources
versity. Violations of academic integrity include, cheating, is permitted if consistent with applicable Johns Hopkins
plagiarism,unapproved multiple submissions, knowingly University and divisional policy, and if such use is reason-
furnishing false information to any agent of the University able, not excessive, and does not impair work performance
for inclusion in academic records, and falsification, forgery, or productivity.
alteration, destruction, or misuse of official University docu- Please visit the JHU IT link above for additional infor-
ments. Members of the faculty are responsible for announc- mation on unacceptable use of IT resources.
ing the academic requirements of each course, for the
conduct of examinations, and for the security of examina-
12
Tuitions and Fees / Financial Aid / Veterans Benefits
Tuition and Fees Refund Schedule
General Information
Drop Date Refund
Students whose tuition is paid by contract should begin Prior to third class meeting 100%
processing requests with their employers well before registra-
tion deadlines to ensure that payment is made as required. Prior to fourth class meeting 75%
Students are ultimately responsible for all costs associated Prior to fifth class meeting 50%
with their registration. Prior to sixth class meeting 25%
Tuition
The graduate tuition fee is $3,175 per course, unless oth- Online Courses
erwise noted. The tuition for 200-level courses is $1,745. Drop Date Refund
Tuition for courses in the daytime programs of the Whiting Prior to third week of class 100%
School is a percentage of full-time tuition. If students need Prior to fourth week of class 75%
a receipt for the classes they are attending, they may contact
Student Accounts at 410-516-8158. Prior to fifth week of class 50%
Prior to sixth week of class 25%
Application Fee
The application fee for degree and certificate programs and Students who are enrolled at The Johns Hopkins University
Special Students is $75. This fee must be submitted with the for the first time and who are receiving federal student finan-
application and is not refundable under any circumstances. cial aid are subject to a separate refund policy during their
Whiting School of Engineering degree and certificate recipi- first period of enrollment. Refer to Title IV Refunds on the
ents who wish to enter into another degree or certificate Financial Aid page for further information.
program may apply without paying an application fee.
Graduation Fee
The graduation fee is $100 and is payable upon receipt of
Financial Aid
an e-bill notification from the Office of Student Accounts. Federal financial aid in the form of student loans is available
to part-time graduate degree candidates who are enrolled
Late Tuition Payment Fee in two or more courses per term. Students must complete
Tuition payment due dates are indicated on the academic the Free Application for Federal Student Aid (FAFSA). This
calendar. If payment is received after the due date, a late form is available online at fafsa.ed.gov. For more informa-
payment fee of $150 will be incurred. tion about applying for financial aid, please review the Office
of Student Financial Services website at www.jhu.edu/finaid
Transfer Credit Fee or contact the Office of Student Financial Services, 146
Graduate courses completed at another school and approved Garland Hall, 410-516-8028 or email to [email protected].
for transfer are assessed a fee of $315 per course. Definition of Full-Time, Half-Time, and
Part-Time Enrollment
Fee for Removal of an Incomplete Grade Students who take three or more EP courses each term are
Students who receive an incomplete grade for a course are considered to be enrolled on a full-time basis, students who
required to pay a $60 fee to have the I grade changed to the take two courses are considered to be enrolled on a half-time
final grade. This fee must be paid to the EP office, Dorsey basis, and students who take one course are considered to be
Student Services Center, before the grade change can be enrolled on a part-time basis.
released by the Registrar. No payment is required if the final
grade is an F. Veterans Benefits
Johns Hopkins is approved by the Maryland Higher Educa-
Refund Policy tion Commission for the training of veterans and the wid-
Refunds apply only to the tuition portion of a student’s ows and children of deceased veterans under provisions of
charges and are calculated from the date of drop submission. the various federal laws pertaining to veterans’ educational
Telephone drops or withdrawals are not accepted. Refunds benefits. Information about veterans’ benefits and enroll-
are not applicable to any fees. Refunds are not granted to ment procedures may be obtained at the Registrar’s Office,
students suspended or dismissed for disciplinary reasons. Garland Hall, 410-516-7071. Students eligible for veterans
Tuition refunds are made in accordance with the following educational benefits register and pay their university bills in
schedule. the same manner as other students. Reimbursement is made
by the Department of Veterans Affairs on a monthly basis.
The amount of reimbursement is determined by the veteran’s
number of dependents and course load.
13
Financial Aid / Facilities and Student Services
Note: Credits are not assigned to EP graduate courses. A Department of Veterans Affairs to eligible veterans. General
Information
General Information
statement of “equivalent” credits for each graduate course information about the program and eligibility requirements
taken may be obtained from the Registrar’s Office. To obtain is available here. For more specific information on apply-
reimbursement, a veteran must comply with the following ing for the Yellow Ribbon program at EP, please contact
procedures: the Registrar’s Office at jhu.edu/registr/veterans.html or
410-516-7071.
Initial Enrollment—The veteran must first apply and be
General
admitted to one of the schools of the University. He or she

then obtains an Application for Program of Education or
Training (DVA Form 22-1990) from the U.S. Department Facilities and Student
of Veterans Affairs at gibill.va.gov.
After completing the application, the veteran sends it, Services
with a certified copy of appropriate discharge papers, to the Engineering for Professionals courses are offered through-
following address: out Maryland at the Homewood campus in Baltimore, the
Johns Hopkins University Applied Physics Laboratory (APL) in Laurel, the Mont-
Office of the Registrar – 75 Garland Hall gomery County Campus in Rockville, the Dorsey Student
Veterans Affairs Services Center near Baltimore/Washington International
3400 N. Charles Street Thurgood Marshall Airport, the Southern Maryland Higher
Baltimore, Maryland 21218-2681 Education Center in St. Mary’s County, the Washington
Center in Washington, D.C., the Higher Education and
Transfers—When transferring from another college or Conference Center @ HEAT in Harford County, the
university, the veteran must obtain a Request for Change of Crystal City Center in Arlington, Virginia, and fully online.
Program or Place of Training Form (DVA Form 22-1995) The educational and student facilities and services provided
from the U.S. Department of Veterans Affairs at gibill. at each location are described on the following pages.
va.gov, and submit the completed form to the Registrar’s
Office in Garland Hall at the University. Student ID JCards
Re-enrollment—A student who received veterans benefits University identification cards are mailed to the home
while attending the University during the preceding semes- address of every registered student. The JCard acts as the
ter or summer session, and who plans to re-enroll with university library card, which enables students to check out
no change of objective, must advise the Registrar when books from the Homewood Eisenhower Library or at any
submitting registration materials that he or she wishes to be of the campus center libraries, and provides access to many
recertified under the provisions of the original DVA Form computer laboratories. To replace a lost or stolen JCard,
22-1990. contact the JCard Office at 410-516-5121.
Students receiving veterans benefits must pursue a
program of courses that leads toward the exact objective Transcripts
(normally a degree or certificate) indicated on the original Official transcripts will be mailed upon written request of
DVA application. Any change in program or objective the student at no charge. Requests for transcripts should
requires submission of a Request for Change of Program be directed to the Office of the Registrar, 410-516-7088.
(DVA Form 22-1995). Veteran students are required to Transcripts may also be ordered online from studentclear-
advise the Registrar immediately of any change in their pro- inghouse.org for a fee. For more information about each of
gram or status (add/drops) which might affect the amount these options, see jhu.edu/registr/transcript.html.
of their monthly payment from the DVA. Failure to do so
will cause the DVA to seek restitution from the veteran for International Student Services
the overpayment of benefits. For a description of all the services available at Johns Hop-
kins for international students, contact the Office of Inter-
Standards of Progress—Continuation of DVA payments is
national Student and Scholar Services at 410-516-1013 or
dependent upon the veteran meeting the academic standards
jhu.edu/isss. For information related to EP admission, please
established by the University for all students—veterans and
refer to the Admission Requirements section of this catalog.
non-veterans alike. The veteran must also meet any stan-
dards of progress that are or may be established by DVA
Services for Students with Disabilities
regulations. If the student fails to meet these standards,
The Johns Hopkins University is committed to making all
benefits will be suspended until the DVA completes a review
academic programs, support services, and facilities acces-
of the student’s progress and determines that the benefits
sible to qualified individuals. Students with disabilities who
may be resumed.
require reasonable accommodations should contact the EP
Yellow Ribbon Tuition Assistance Program—EP partici- disability services administrator at 410-516-2270 or email
pates in the Yellow Ribbon program provided by the U.S. [email protected].
14
Facilities and Student Services
In order to receive accommodations, it is important Computers
General Information
to provide to the University a comprehensive evaluation IT@Johns Hopkins (IT@JH) provides a number of resourc-
of a specific disability from a qualified diagnostician that es that are useful to students. Brief descriptions are provided
identifies the type of disability, describes the current level of below. For more information, go to jumpstart.jhu.edu.
functioning in an academic setting, and lists recommended Outlook Live @ Hopkins: [email protected]
accommodations. All documentation will be reviewed and kins.edu provides JHU students with a free 10GB lifetime
reasonable accommodations will be provided based on the email account, 25GB online storage solution, collaboration,
student’s needs. Students are required to contact the Engi- blogging, photo sharing, event planning, instant messaging
neering for Professionals office at least six weeks prior to the tools and more. Some features of Outlook Live @ Hopkins
beginning of each semester to ensure that services will be include:
available. • Built-in protection and anytime/anywhere access
For questions or concerns regarding University-wide • Each student gets a 10GB email account built on Out-
disability issues, please email studentdisabilityservices@jhu. look Live, up to 20 MB attachments
edu.
• Students can easily access their email from a variety of
browsers on both the PC and MAC which includes full
JH Student Assistance Program
support for Internet Explorer, Firefox and Safari
The JH Student Assistance Program (JHSAP) is a profes-
sional counseling service that can assist students with man- • Connect to mailbox using with POP3, IMAP4 with
aging problems of daily living. Stress, personal problems, preferred email program or mobile phones
family conflict, and life challenges can affect the academic • Get many capabilities such as address book, calendaring,
progress of students. JHSAP focuses on problem-solving mobile push email, instant messaging and more
through short-term counseling. Accessing the service is a • Improve collaboration and productivity by making it eas-
simple matter of a phone call to arrange an appointment ier to find and share data, and schedules from anywhere
with a counselor. Office locations are conveniently located • Students can look up other users in the address book
in the Washington/Baltimore corridor to meet the needs of • Offers end-users a single inbox to access all of their
our students. Online students may call the number below important communications
for consultation and will be directed to the appropriate
resource or office. To contact JHSAP, call 443-997-7000 or All students are required to activate their assigned Out-
toll-free 866-764-2317. Additional information regarding look Live email address. All official communications from
the JHSAP services can be obtained at: jhsap.org. JHSAP EP and Johns Hopkins University will be sent to this
services are completely confidential. The program operates address, including class assignments, billing information,
under state and federal confidentiality legislation and is emergency notifications, and other important items. Click
HIPAA compliant. it.johnshopkins.edu/services/email/outlookliveathopkins/
to find the instructions to activate your Outlook Live
Inclement Weather email address and how to forward your JHU email to other
The JHU Weather Emergency Line can be reached at addresses.
410-516-7781 or 800-548-9004. The JHU Weather Emer- Jshare—JShare is a web-based utility intended to provide
gency Line provides information on campus closings due to students with a personal, easy-to-use interface to upload,
inclement weather. The University may also use the same download, and share files to users both inside and outside of
phone lines occasionally to distribute other urgent informa- the institution. Some features of JShare include
tion. Announcements and closings will also be posted on the
• 5 gigabytes of file storage space for students and staff
website: webapps.jhu.edu/emergencynotices.
• Secure file access from anywhere at any time
Web-based Student Directory • Advanced collaboration and document management
JHED (Johns Hopkins Enterprise Directory) is the primary • File sharing ability both inside and outside the Institutions
source for contact information of Johns Hopkins students. • Ability to email files as links to reduce the load on email
Your JHED login ID will be used for many web-based ser- systems
vices, such as online registration, remote library access, and • Ability to create and maintain personal websites
some course websites. You may find your login ID and initi-
ate your account by going to my.jhu.edu from a computer Visit www.it.johnshopkins.edu/services/collaboration_
at any of the campuses or by calling 410-516-HELP. Once tools/jshare/ for more information.
you have set a password, you may use JHED from anywhere JHConnect—JHConnect is a remote access application that
by logging in. If you have any questions, contact Hopkins provides access to restricted Hopkins applications and sys-
Information Technology Services at 410-516-HELP. tems when you are not on campus. JHConnect offers greater
compatibility and support for newer computers and their
operating systems. Remote access to Hopkins is provided by
15
JHConnect online through the myJH portal. More infor- please visit ep.jhu.edu/textbooks or by clicking on the text-
General Information
mation about JHConnect is available here: portalcontent. book icon for each individual course on the course schedule
johnshopkins.edu/sslvpn/JHConnect-FAQ.html. on the EP website.
Note: You must have an active JHED login to access this • Johns Hopkins Merchandise
site. Barnes & Noble Johns Hopkins sells apparel, gifts, school
Anti-Virus Policy—All devices vulnerable to electronic supplies, and books. For more information, call 410-662-
viruses must be appropriately safeguarded against infection 5850 or visit johns-hopkins.bncollege.com.
and retransmission. It is the responsibility of every user
to ensure that anti-virus protection is current and effec-
• Hopkins Student Union
tively implemented. Infected devices may be blocked and/ Located in Levering Hall and the Glass Pavilion, the Hop-
or removed from the JH Network by IT@JH or appropriate kins Student Union offers various programs and activities
departmental personnel. for students, faculty, staff, and friends of the University.
On behalf of the Johns Hopkins Institutions, IT@JH Levering Hall contains the Levering Food Court, a complete
has licensed Symantec AntiVirus, available for Windows and dining facility with various retail venues offering a combina-
Mac OS X operating systems. tion of American and ethnic fare, and the Pura Vida Organic
Johns Hopkins students may use this website (it.jhu. Coffee shop located in the Levering Lobby, offering gourmet
edu/antivirus) to download and use Symantec AntiVirus coffee, sandwiches, and pastries. The hours of operation for
on computers owned by the University or Health System, all Homewood dining facilities are available at jhu.edu/hds/
or on personally owned computers, as long as they remain dining.
part of the Johns Hopkins community. Personal use of the • Security Services
software must cease when the student leaves the University A daily escort van service is available during the evening
or Health System. hours (5 p.m. to 3 a.m.) to pick up and deliver students
Download access is restricted to those with a valid to any campus parking lot or other location within a one-
JHED (Johns Hopkins Enterprise Directory) LID (login mile radius of campus. Vans leave every half hour from the
ID) and password. Eisenhower Library.
Walking escorts are available by calling extension 8700
Questions and Grievances
from any campus phone or 410-516-8700 from an outside
If you have a question or grievance that you would like to
or public telephone. Push button security/ escort phones,
communicate to Engineering for Professionals, please email
located in several campus buildings, can be used to alert
us at [email protected].
security officers of an emergency, to request information, or
The Homewood Campus to summon the escort van.
The Homewood campus, located at 3400 North Charles Emergency telephone stands with blue lights, which
Street in Baltimore, is grouped around adjoining quadran- connect directly with the security office, are located at
gles. The Georgian architecture and wooded walkways and strategic locations around campus. These telephones open
lawns make Homewood a pleasant retreat in a residential a direct line to the security office as soon as the receiver is
area of Baltimore. lifted or the button pushed. To ward off a possible attacker,
an alarm sounds at the phone. Pay telephones also are avail-
• Libraries able in most campus buildings. Security officers also patrol
The entire library collection of the Johns Hopkins University parking lots from 3 to 11 p.m., Monday through Friday.
contains close to 3 million volumes; more than two million Student monitors, wearing bright orange vests and carrying
of these and one million microforms are available on the radios, patrol the upper and lower quads during fall and
Homewood campus. Most of the Homewood collections are spring semesters.
shelved in the Milton S. Eisenhower Library, which is open To reach the security office, call 410-516-4600. In case
until 10 p.m. on Friday and Saturday, and until midnight of an emergency, call 410-516-7777.
on the other days of the week.
Students are issued a JCard by the JCard Office upon • Parking
registering. This card entitles them to use the Eisenhower Parking arrangements are made in the South Garage, under
Library and the Hutzler Reading Room, and hours of opera- the Decker Quadrangle. Parking office hours are Monday
tion can be found at library.jhu.edu/about/hours.html. through Friday, 7:30 a.m. to 10 p.m., and Saturday through
Sunday, 10 a.m. to 6:30 p.m. 410-516-7275.
• Textbooks
Engineering for Professionals has selected MBS Direct as its Applied Physics Laboratory Education Center
singly online textbook provider for all locations. MBS Direct The Applied Physics Laboratory (APL), a division of the
also provides used books, buyback, a return policy, and a Johns Hopkins University, is primarily a research and devel-
secure ordering site. For information regarding textbooks, opment organization. As such, a major part of its mission
16
is the application of advanced science and technology in To use materials, present your JCard at the circulation
General Information
solving problems of national and global significance. How- desk. The library is open from noon to 9 p.m., Monday
ever, its mission also includes support of the educational through Thursday; noon to 6 p.m., Friday; and 10 a.m. to
programs of the University, and the Laboratory maintains 5 p.m., Saturday.
strong academic relationships with the other University
divisions. • Computers
One of APL’s most significant educational contribu- Computer facilities at the Montgomery County Campus
tions is its close collaboration with the Engineering for include Sun Ray thin clients, UNIX servers and worksta-
Professionals program. Chairs for eight of EP’s 15 programs tions, and personal computers available for student use. In
hold staff positions at APL, along with nearly half of EP’s addition, students have access via high-speed data links to
instructors. APL provides classrooms, conference space, UNIX servers at Homewood and APL. Dial-in PPP access
computer labs, and Unix servers for administrative and to the servers is also available. A fully functional networking
academic support of EP in the Kossiakoff Center, as well as lab with seven routers and three switches that are accessible
classrooms in the R. E. Gibson Library. locally and via a console server over the Internet is also
located at the Montgomery County Campus.
• Computers
Computer facilities at the Kossiakoff Center include Multi- • Café
User UNIX systems (two Sun servers) and a Sunray appli- Located in the Academic and Research building, the cafe
ance-based X-terminals lab that provides a windowing serves snacks and sandwiches during the daytime and early
environment via the default CDE window manager or the evening hours.
gnome window manager. These terminals are connected to
the UNIX servers as well as to the Internet via a high-speed • Parking
LAN or WAN. Personal computer labs provide support for Free parking permits are issued upon completion of the
general purpose computing and applications development, application form. Parking permits may be obtained at the
embedded/interface design (with scopes and embedded Gilchrist Hall front desk during the first two weeks of
processor development systems), and computer/network classes. There is no charge for this service.
security. Remote access to the servers at APL is also available.
Dorsey Student Services Center
• Parking In addition to classrooms and computer labs, the Dorsey
Parking tags are not required. The lower level parking lot Center houses the admissions and registration staff and
near the Kossiakoff Center is recommended. serves as a central point of access for academic advising and
financial services. The Dorsey Center is located near the
Montgomery County Campus Baltimore/Washington International Thurgood Marshall
The mission of the Montgomery County Campus in the Airport at 6810 Deerpath Road, Suite 100, Elkridge, MD.
Shady Grove Life Sciences Center in Rockville is to create a The center has an instructional laboratory equipped
community of education, business, and government organi- with Sun thin client workstations, personal computers, and
zations where collaborative thinking and scientific discovery high-speed Internet access. Access to the UNIX servers at
advance academic and economic development. The campus, APL is provided via dedicated high-speed lines. The Dorsey
which houses 46 smart classrooms and five computer labs, a Center houses the Computer Robotics Lab which allows stu-
full-service library, café, and extensive conference space, wel- dents to develop computer controlled autonomous robots.
comes 4,000 students per year. Four of the University’s nine The center is also the site of the EP’s Microwave Engineering
schools offer more than 60 degree and certificate programs Laboratory, a state-of-the-art facility for designing, develop-
at this location. In recent years, three technology research ing, and testing microwave chips and circuits. This labora-
centers have co-located with Johns Hopkins University on tory houses a full variety of microwave test and measurement
this campus. equipment including:
• Network analyzers
• Library
The Montgomery County Campus Library maintains a • Spectrum analyzers
reference and circulating collection of materials for use by • Noise measuring equipment
faculty and students. Subject areas in the collection include • Sweep generators
computer science, electrical engineering, environmental • Synthesizers
engineering and science, management, and physics. Interli-
• Fabrication and assembly equipment
brary loan service is provided to assist in obtaining journals
and books not available at the MCC library. An online In support of the microwave chip and circuit design pro-
catalog of the collection and a variety of full-text INSPEC cess, our CAD laboratory has 13 workstations (12 student
and IEEE databases, including Compendex, are accessible and one instructor) offering the latest versions of following
through personal computer workstations in the library. software:
17
• Pro/Engineer and Pro/a list for mechanical engineering Crystal City Center
General Information
and analysis The Crystal City Center is EP’s first Northern Virginia loca-
• Agilent ADS, Sonnet, MATLAB & gEE-CAD for micro- tion, located just south of the Pentagon and accessible via
wave chip and circuit design and analysis Metro’s blue and yellow lines. Selected courses in systems
• Or CAD Capture and Layout for PCB design engineering are currently offered on site. The Johns Hop-
kins University Whiting School of Engineering is certified
These two laboratories offer our students the latest in hard- to operate in the Commonwealth of Virginia by the State
ware and software technology available in industry today. Council of Higher Education for Virginia.
Southern Maryland Higher Education Center Higher Education and Conference Center @ HEAT
This facility was created by the Maryland General Assem- The HEAT Center is located in Harford County. Selected
bly to serve as the regional upper-level undergraduate and courses in environmental engineering, science, and manage-
graduate education and research institution for Southern ment; applied and computational mathematics; and systems
Maryland. Currently, 14 colleges and universities are par- engineering are currently being offered on site.
ticipating, offering more than 95 academic programs, with
more than 80 graduate and 15 undergraduate completion Inter-site Links
programs. Facilities include two buildings with classrooms, To increase the variety of courses at the centers, select courses
a large multipurpose room, computer labs, a conference hall, are offered using video-teleconferencing equipment. This
a learning conference room, two student lounges, vending technology allows for two-way audio and video connectiv-
areas, and interactive videoconferencing capability. The ity, creating real-time interaction between the sending and
full EP Systems Engineering and Technical Management receiving sites. The system provides links between APL, the
programs are offered here, along with selected courses in Dorsey Center, the Southern Maryland Higher Education
Applied and Computational Mathematics. Center, and the Montgomery County Campus and permits
students at any of the sites to enroll at courses originating
Washington, DC Center at the other.
The Washington Center is conveniently located near the To further facilitate communication, high-speed data
Dupont Circle Metro stop. Selected courses in environ- links connect Homewood, APL, the Montgomery County
mental engineering, science, and management are currently Campus, and the Dorsey Center, enabling students to access
being offered on site. systems internally and via the Internet.
18
Applied and Computational Mathematics
Applied and The applicant’s prior education must include at least one
mathematics course beyond multivariate calculus (such as
Computational
advanced calculus, differential equations, or linear algebra).
All applicants must be familiar with at least one program-
ming language (e.g., C, C++, FORTRAN, Java, Python, or
Mathematics MATLAB).
Applied and computational mathematics is concerned with Advanced Certificate for Post-Master’s Study. Applicants must
the use of mathematics to solve problems in diverse areas such meet the criteria above and hold at least a master’s degree in
as engineering, business, science, health care, information applied and computational mathematics or a closely related
technology, and public policy. There is a strong connection area. It is expected that the applicant will have completed
Graduate Programs
between applied mathematics and modern computational courses equivalent to 625.403 Statistical Methods and Data
methods, especially in the design and computer implementa- Analysis and at least one of 625.401 Real Analysis or 625.409
tion of mathematical algorithms. Matrix Theory in prior graduate course work.
The Master of Science in Applied and Computational
Mathematics program prepares students for work in their Course Requirements
areas of interest through instruction in mathematical and
M.S. Degree. Ten one-term courses must be completed within
computational techniques of fundamental importance and
five years. The 10 courses must include 625.403 (Statistical
practical relevance. The program allows students to choose
Methods and Data Analysis); at least one of 625.401 (Real
an area of concentration such as probability and statistics,
Analysis) or 625.409 (Matrix Theory); and at least one of
applied analysis, operations research, information technology
the two-term sequences 625.717-718 (Advanced Differen-
and computation, or simulation and modeling. Students are
tial Equations: Partial and Nonlinear Differential Equations),
also free to select courses from different areas to meet their
625.721-722 (Probability and Stochastic Processes I and II)
individual needs. All students in the program will take a blend
or 625.725-726 (Theory of Statistics I, II). The remaining six
of introductory and advanced courses. Modern computing
courses must include at least four from the ACM program
facilities are available for student use at the Kossiakoff Center
(courses numbered 625.xxx), with at least two of the four
of the Applied Physics Laboratory and all other EP campuses.
courses at the 700-level. Students are required to take at least
one 700-level course outside of the sequences 625.717-718,
Program Committee 625.721-722, and 625.725-726. A student who has taken at
James C. Spall, Program Chair least one year of undergraduate statistics or one semester of
Principal Professional Staff graduate statistics (outside of ACM) may substitute another
Applied Physics Laboratory 625.xxx course for 625.403 with approval of the student’s
advisor. Two one-term elective courses are also to be taken.
Beryl Castello These may be from the ACM program or from another gradu-
Lecturer, Applied Mathematics and Statistics ate program described in the catalog, subject to the approval
Whiting School of Engineering of the student’s advisor. If chosen from another program, the
Stacy D. Hill courses are required to have significant mathematical content.
Senior Professional Staff A thesis or knowledge of a foreign language is not required.
Advanced Certificate for Post-Master’s Study
George Nakos
Six one-term courses must be completed within three years. At
Professor, Mathematics
least four of the six courses must be ACM courses numbered
U.S. Naval Academy
625.480 or higher, with at least three of these courses being
Edward R. Scheinerman at the 700-level. Courses 625.401 (Real Analysis), 625.403
Professor, Applied Mathematics and Statistics, and (Statistical Methods and Data Analysis), and 625.409 (Matrix
Vice Dean for Education Theory) may not be counted toward the post-master’s certifi-
Whiting School of Engineering cate. At least one of the 700-level courses must be outside of
the sequences 625.717-718, 625.721-722, and 625.725-726.
J. Miller Whisnant
Students are allowed to take one mathematically oriented elec-
Principal Professional Staff
tive course from outside the ACM program as part of the six
courses for the certificate, subject to advisor approval.
A student with a long-standing interest in pursuing a
Ph.D. through the Applied Mathematics and Statistics (AMS)
M.S. Degree or Special Student. Applicants must meet the Department at the Homewood campus should coordinate
general requirements for admission to graduate study, out- his/her course plan with an ACM advisor and with a represen-
lined in this catalog in the Admission Requirements section. tative in the AMS Department. Certain courses within ACM
19
may be especially helpful in passing the required entrance 625.490 Computational Complexity and
examination for the Ph.D. program. No priority of admis- Approximation
sion for the Ph.D. degree program is given to graduates of 625.703 Functions of a Complex Variable
the ACM program. 625.710 Fourier Analysis with Applications to Signal
Listed below are five concentration areas within Applied Processing and Differential Equations
and Computational Mathematics. Students are free to focus
625.717 Advanced Differential Equations: Partial
their course selections in one of these areas. There is no
Differential Equations
requirement that a concentration area be chosen.
625.718 Advanced Differential Equations: Nonlinear
I. Probability and Statistics Differential Equations and Dynamical
Systems
Graduate Programs
625.403 Statistical Methods and Data Analysis

625.728 Measure-Theoretic Probability
625.417 Applied Combinatorics and Discrete
Mathematics Electives
625.420 Mathematical Methods for Signal Processing 605.727 Computational Geometry
625.423 Introduction to Operations Research: 615.765 Chaos and Its Applications
Probabilistic Models
III. Operations Research
625.438 Neural Networks
625.403 Statistical Methods and Data Analysis
625.461 Linear Models and Regression
625.409 Matrix Theory
625.462 Design and Analysis of Experiments
625.414 Linear Optimization
625.463 Multivariate Statistics and Stochastic Analysis
625.415 Nonlinear Optimization
625.464 Computational Statistics
625.417 Applied Combinatorics and Discrete
625.480 Cryptography
Mathematics
625.490 Computational Complexity and
625.423 Introduction to Operations Research:
Approximation
Probabilistic Models
625.495 Time Series Analysis and Dynamic Modeling
625.436 Graph Theory
625.710 Fourier Analysis with Applications to Signal
625.441 Mathematics of Finance
Processing and Differential Equations
625.442 Mathematics of Risk, Options, and
625.714 Introductory Stochastic Differential
Financial Derivatives
Equations with Applications
625.461 Linear Models and Regression
625.721 Probability and Stochastic Process I
625.462 Design and Analysis of Experiments
625.722 Probability and Stochastic Process II
625.463 Multivariate Statistics and Stochastic Analysis
625.725 Theory of Statistics I
625.490 Computational Complexity and
625.726 Theory of Statistics II Approximation
625.728 Measure-Theoretic Probability 625.495 Time Series Analysis and Dynamic Modeling
625.734 Queuing Theory with Applications to 625.714 Introductory Stochastic Differential
Computer Science Equations with Applications
625.740 Data Mining 625.721 Probability and Stochastic Process I
625.741 Game Theory 625.722 Probability and Stochastic Process II
625.743 Stochastic Optimization and Control 625.725 Theory of Statistics I
625.744 Modeling, Simulation, and Monte Carlo 625.726 Theory of Statistics II
II. Applied Analysis 625.734 Queuing Theory with Applications to
Computer Science
625.401 Real Analysis
625.740 Data Mining
625.402 Modern Algebra
625.741 Game Theory
625.404 Ordinary Differential Equations
625.743 Stochastic Optimization and Control
625.409 Matrix Theory
625.744 Modeling, Simulation, and Monte Carlo
625.411 Computational Methods
625.480 Cryptography IV. Information Technology and Computation
625.485 Number Theory 625.403 Statistical Methods and Data Analysis
625.487 Applied Topology 625.409 Matrix Theory
20
625.411 Computational Methods 625.423 Introduction to Operations Research:

625.414 Linear Optimization Probabilistic Models
625.415 Nonlinear Optimization 625.438 Neural Networks
625.417 Applied Combinatorics and Discrete 625.441 Mathematics of Finance
Mathematics 625.442 Mathematics of Risk, Options, and
625.423 Introduction to Operations Research: Financial Derivatives
Probabilistic Models 625.461 Linear Models and Regression
625.436 Graph Theory 625.462 Design and Analysis of Experiments
625.438 Neural Networks 625.463 Multivariate Statistics and Stochastic Analysis
Graduate Programs
625.461 Linear Models and Regression 625.464 Computational Statistics
625.480 Cryptography 625.490 Computational Complexity and
625.485 Number Theory Approximation
625.487 Applied Topology 625.495 Time Series Analysis and Dynamic Modeling
625.490 Computational Complexity and 625.714 Introductory Stochastic Differential
Approximation Equations with Applications
625.495 Time Series Analysis and Dynamic Modeling 625.717 Advanced Differential Equations:
625.725 Theory of Statistics I Partial Differential Equations
625.726 Theory of Statistics II 625.718 Advanced Differential Equations: Nonlinear
Differential Equations and Dynamical
625.734 Queuing Theory with Applications to
Systems
Computer Science
625.721 Probability and Stochastic Process I
625.740 Data Mining
625.725 Theory of Statistics I
625.744 Modeling, Simulation, and Monte Carlo
625.726 Theory of Statistics II
V. Simulation and Modeling 625.728 Measure-Theoretic Probability
625.403 Statistical Methods and Data Analysis 625.740 Data Mining
625.404 Ordinary Differential Equations 625.741 Game Theory
625.414 Linear Optimization 625.743 Stochastic Optimization and Control
625.415 Nonlinear Optimization 625.744 Modeling, Simulation, and Monte Carlo
625.420 Mathematical Methods for Signal Processing
Course Descriptions
Courses numbered 700-level and above are open only to stu- 625.251 Applied Mathematics II
dents who have been approved for graduate status. Courses 625.260 Introduction to Linear Systems
are taught mainly at the Applied Physics Laboratory, but some
courses are also offered at the Dorsey Center, the Higher Edu- The above non-graduate courses have the following character-
cation and Conference Center @ HEAT, the Southern Mary- istics and relationship to each other:
land Higher Education Center, the Montgomery County • 625.201 is a broad review of calculus, linear algebra, and
Campus, and online. Please refer to the Course Schedule ordinary differential equations;
published each term for exact dates, times, locations, fees, • 625.250 is a deeper review of multivariate calculus and
and instructors. linear algebra, including complex variables, but the course
does not cover differential equations (this course may
Non-Graduate Credit Courses count as a replacement for multivariate calculus for those
The 200-level courses offered are intended to provide math- students lacking the required undergraduate multivariate
ematical background for graduate course work in EP. These calculus course);
200-level courses are not for graduate credit. Some students • 625.251 covers ordinary and partial differential equations
may find one or more of these courses useful as a refresher or and is especially oriented to providing the mathematics
to fill gaps in their training. background for the Applied Physics Program and some
625.201 General Applied Mathematics tracks in the Electrical and Computer Engineering Pro-
625.250 Applied Mathematics I gram; and
21
• 625.260 on linear systems is designed primarily for stu- 625.401 Real Analysis
dents with an interest in the theory, transforms, and algo- This course presents a rigorous treatment of fundamental
rithms associated with linear differential equations. concepts in analysis. Emphasis is placed on careful reason-
ing and proofs. Topics covered include the completeness and
625.201 General Applied Mathematics order properties of real numbers; limits and continuity; condi-
This course is designed for students whose prior background tions for integrability and differentiability; infinite sequences
does not fully satisfy the mathematics requirements for admis- and series. Basic notions of topology and measure are also
sion and/or for students who wish to take a refresher course introduced.
in applied mathematics. The course provides a review of dif- Prerequisite: Multivariate calculus.
ferential and integral calculus in one or more variables. It
covers elementary linear algebra and differential equations, Hill
Graduate Programs
including first- and second-order linear differential equations.

625.402 Modern Algebra
Basic concepts of matrix theory are discussed (e.g., matrix
multiplication, inversion, and eigenvalues/eigenvectors). (Not This course examines the structures of modern algebra,
for graduate credit) including groups, linear spaces, rings, polynomials, and fields
and some of their applications to such areas as cryptography;
Prerequisite: Two semesters of calculus.
primality testing and the factorization of composite numbers;
Note: This course alone does not fulfill the mathematics efficient algorithm design in computing; circuit design; and
requirements for admission to the Applied and Computational signal processing. It will include an introduction to quantum
Mathematics program; additional course work is required. information processing. Grading is based on weekly problem
Davis sets, a midterm, and a final.
Prerequisites: Multivariate calculus and linear algebra.
625.250 Applied Mathematics I
Johnston
This course covers the fundamental mathematical tools
required in applied physics and engineering. The goal is to 625.403 Statistical Methods and Data Analysis
present students with the mathematical techniques used in
This course introduces commonly used statistical methods to
engineering and scientific analysis and to demonstrate these
provide an understanding of statistical techniques and guid-
techniques by the solution of relevant problems in various dis-
ance on the appropriate use of methodologies. The course cov-
ciplines. Areas include vector analysis, linear algebra, matrix
ers the mathematical foundations of common methods as an
theory, and complex variables. (Not for graduate credit)
aid toward understanding both the types of applications that
Prerequisite: Differential and integral calculus. are appropriate and the limits of the methods. MATLAB and
D’Archangelo statistical software are used so students can apply statistical
methodology to practical problems in the workplace. Topics
625.251 Applied Mathematics II include the basic laws of probability and descriptive statis-
This course is a companion to 625.250. Topics include ordi- tics, conditional probability, random variables, expectation
nary differential equations, Fourier series and integrals, the and variance, discrete and continuous probability models,
Laplace transformation, Bessel functions and Legendre poly- bivariate distributions and covariance, sampling distributions,
nomials, and an introduction to partial differential equations. hypothesis testing, method of moments and maximum like-
(Not for graduate credit) lihood point (MLE) estimation, confidence intervals, con-
Prerequisite: Differential and integral calculus. Students with tingency tables, analysis of variance (ANOVA), and linear
no experience in linear algebra may find it helpful to take regression modeling.
625.250 Applied Mathematics I first. Prerequisite: Multivariate calculus.
D’Archangelo Bodt, McQuarrie, Wang
625.260 Introduction to Linear Systems 625.404 Ordinary Differential Equations
This course is designed primarily for students who do not have This course provides an introduction to the theory, solution
a bachelor’s degree in electrical engineering. The course may and application of ordinary differential equations. Topics dis-
be useful to those with general interests in linear systems anal- cussed in the course include methods of solving first-order
ysis, control systems, and/or signal processing. Topics include differential equations, existence and uniqueness theorems,
signal representations, linearity, time-variance, convolution, second-order linear equations, power series solutions, high-
and Fourier series and transforms. Coverage includes both er-order linear equations, systems of equations, non-linear
continuous and discrete-time systems. Practical applications equations, Sturm-Liouville theory, and applications. The rela-
in filter design, modulation/demodulation, and sampling are tionship between differential equations and linear algebra is
introduced. (Not for graduate credit) emphasized in this course. An introduction to numerical solu-
Prerequisite: Differential and integral calculus. tions is also provided. Applications of differential equations in
Iglesias physics, engineering, biology, and economics are presented.
22
This course covers more material at greater depth than the planning, worker scheduling, and resource allocation. Linear
standard undergraduate-level ODE course. programming is used in a number of fields: manufacturing,
Prerequisite: Two or more terms of calculus are required. A transportation, and military operations are just a few. In this
course in linear algebra would be helpful. course, we will cover solution techniques for linear programs
including the simplex method, the revised simplex method,
Farris
the dual simplex method, and, time permitting, interior point
625.409 Matrix Theory methods. We will also investigate linear programming geom-
etry and duality, theorems of the alternative, and sensitivity
In this course, topics include the methods of solving linear
analysis. In parallel with our theoretical development we will
equations, Gaussian elimination, triangular factors and row
consider how to formulate mathematical programs for a vari-
exchanges, vector spaces (linear independence, basis, dimen-
Graduate Programs
ety of applications including familiar network models such as
sion, and linear transformations), orthogonality (inner prod-
the assignment, transshipment, transportation, shortest path,
ucts, projections, and Gram-Schmidt process), determinants,
and maximum flow problems. We will also present some
eigenvalues and eigenvectors (diagonal form of a matrix, simi-
methods and applications for integer programming problems
larity transformations, and matrix exponential), singular value
(e.g., branch and bound and cutting plane methods) and dis-
decomposition, and the pseudo-in-verse. The course also
cuss the role of multiobjective linear programming and goal
covers applications to statistics (least squares fitting to linear
programming in this area.
models, covariance matrices) and to vector calculus (gradient
operations and Jacobian and Hessian matrices). MATLAB Prerequisite: Multivariate calculus, linear algebra. Some real
software will be used in some class exercises. analysis would be good but is not required.
Koch, Rio Castello
625.411 Computational Methods 625.415 Nonlinear Optimization

As the need to increase the understanding of real-world phe- Although a number of mathematical programming problems
nomena grows rapidly, computer-based simulations and mod- can be formulated and solved using techniques from linear
eling tools are increasingly being accepted as viable means to and integer problems, there are a wide variety of problems that
study such problems. In this course, students are introduced require the inclusion of nonlinearities if they are to be prop-
to some of the key computational techniques used in model- erly modeled. This course presents theory and algorithms for
ing and simulation of real-world phenomena. The course solving nonlinear optimization problems. Theoretical topics
begins with coverage of fundamental concepts in computa- treated include basic convex analysis, first and second order
tional methods including error analysis, matrices and linear optimality conditions, KKT conditions, constraint qualifica-
systems, convergence, and stability. It proceeds to curve fit- tion, and duality theory. We will investigate an array of algo-
ting, least squares, and iterative techniques for practical appli- rithms for both constrained and unconstrained optimization.
cations, including methods for solving ordinary differential These algorithms include the Nelder-Mead (nonlinear sim-
equations and simple optimization problems. Elements of plex method), steepest descent, Newton methods, conjugate
computer visualization and Monte Carlo simulation will be direction methods, penalty methods, and barrier methods. In
discussed as appropriate. The emphasis here is not so much on parallel with our theoretical and algorithmic development we
programming technique, but rather on understanding basic will consider how to formulate mathematical programs for an
concepts and principles. Employment of higher level pro- assortment of applications including facility location, regres-
gramming and visualization tools, such as MATLAB, reduces sion analysis, financial evaluation, and policy analysis. If time
burdens on programming and introduces a powerful tool permits, we will also address algorithms for special classes of
set commonly used by industry and academia. A consistent nonlinear optimization problems (e.g., separable programs,
theme throughout the course is the linkage between the tech- convex programs, and quadratic programs).
niques covered and their applications to real-world problems. Prerequisite: Multivariate calculus, linear algebra. Some real
Prerequisites: Multivariate calculus and ability to program in analysis would be good but is not required; 625.414 (Linear
MATLAB, FORTRAN, C++, Java, or other language. Cours- Optimization) is not required.
es in matrix theory or linear algebra, and differential equations Castello
would be helpful but are not required.
Joyce 625.417 Applied Combinatorics and Discrete
Mathematics
625.414 Linear Optimization Combinatorics and discrete mathematics are increasingly
Optimization is the act of obtaining the best result while important fields of mathematics because of their exten-
satisfying given constraints. This course focuses mainly on sive applications in computer science, statistics, operations
linear programming and the geometry of linear systems. research, and engineering. The purpose of this course is to
Though “straightforward” in nature, linear programs have teach students to model, analyze, and solve combinatorial
a wide variety of real world applications such as production and discrete mathematical problems. Topics include elements
23
of graph theory, graph coloring and covering circuits, the 625.438 Neural Networks
pigeonhole principle, counting methods, generating func- This course provides an introduction to concepts in neural
tions, recurrence relations and their solution, and the inclu- networks and connectionist models. Topics include paral-
sion-exclusion formula. Emphasis is on the application of lel distributed processing, learning algorithms, and applica-
the methods to problem solving. (This course is the same as tions. Specific networks discussed include Hopfield networks,
605.423 Applied Combinatorics and Discrete Mathematics.) bidirectional associative memories, perceptrons, feedforward
Whisnant networks with back propagation, and competitive learning
networks, including self-organizing and Grossberg networks.
625.420 Mathematical Methods for Signal Software for some networks is provided. (This course is the same
Processing as 605.447 Neural Networks.)
Graduate Programs
This course familiarizes the student with modern tech- Prerequisites: Multivariate calculus and linear algebra.
niques of digital signal processing and spectral estima- Fleischer
tion of discrete-time or discrete-space sequences derived
by the sampling of continuous-time or continuous-space 625.441 Mathematics of Finance
signals. The class covers the mathematical foundation This course offers a rigorous treatment of the subject of invest-
needed to understand the various signal processing techniques ment as a scientific discipline. Mathematics is employed as the
as well as the techniques themselves. Topics include the dis- main tool to convey the principles of investment science and
crete Fourier transform, the discrete Hilbert transform, the their use to make investment calculations for good decision
singular-value decomposition, the wavelet transform, classical making. Topics covered in the course include the basic theory
spectral estimates (periodogram and correlogram), autoregres- of interest and its applications to fixed-income securities, cash
sive, autoregressive-moving average spectral estimates, and flow analysis and capital budgeting, mean-variance portfolio
Burg maximum entropy method. theory and the associated capital asset pricing model, utility
Prerequisite: Mathematics through calculus, matrix theory, function theory and risk analysis, derivative securities and
or linear algebra, and introductory probability theory and/ basic option theory, and portfolio evaluation.
or statistics. Students are encouraged to refer any questions Prerequisites: Multivariate calculus and an introductory course
to the instructor. in probability and statistics (such as 625.403). Some familiar-
Boules ity with optimization is desirable but not necessary.
Pemy
625.423 Introduction to Operations Research:
Probabilistic Models 625.442 Mathematics of Risk, Options, and
This course investigates several probability models that are Financial Derivatives
important to operations research applications. Models covered The concept of options stems from the inherent human desire
include Markov chains, Markov processes, renewal theory, and need to reduce risks. This course starts with a rigorous
queueing theory, scheduling theory, reliability theory, Bayes- mathematical treatment of options pricing, credit default
ian networks, random graphs, and simulation. The course swaps, and related areas by developing a powerful mathemati-
emphasizes both the theoretical development of these models cal tool known as Ito calculus. We introduce and use the well-
and the application of the models to areas such as engineering, known field of stochastic differential equations to develop
computer science, and management science. various techniques as needed, as well as discuss the theory of
martingales. The mathematics will be applied to the arbitrage
Prerequisites: Multivariate calculus and a course in probability
pricing of financial derivatives, which is the main topic of
and statistics (such as 625.403).
the course. We treat the Black-Scholes theory in detail and
Akinpelu use it to understand how to price various options and other
quantitative financial instruments. We also discuss interest
625.436 Graph Theory rate theory. We further apply these techniques to investigate
This course focuses on the mathematical theory of graphs; stochastic differential games, which can be used to model
a few applications and algorithms will be discussed. Topics various financial and economic situations including the stock
include trees, connectivity, Eulerian and Hamiltonian graphs, market. Time permitting we discuss related topics in mecha-
matchings, edge and vertex colorings, independent sets and nism designs, a subfield of game theory that is concerned
cliques, planar graphs, and directed graphs. An advanced topic about designing economic games with desired outcome.
completes the course. Familiarity with linear algebra and basic Prerequisites: Multivariate calculus, linear algebra and matrix
counting methods such as binomial coefficients is assumed. theory (e.g., 625.409), and a graduate-level course in prob-
Comfort with reading and writing mathematical proofs is ability and statistics (such as 625.403).
required.
Note: This class is distinguished from 625.441 Mathematics
Prerequisite: Linear algebra. of Finance (formerly 625.439) and 625.714 Stochastic Differ-
Scheinerman, DeVinney ential Equations, as follows: 625.441 gives a broader and more
24
general treatment of financial mathematics and 625.714 pro- data analysis consists of methods that can be used to study sev-
vides a deeper (more advanced) mathematical understanding eral variables at the same time so that the full structure of the
of stochastic differential equations, with applications in both data can be observed and key properties can be identified. This
finance and non-finance areas. None of the classes (625.441, course covers estimation, hypothesis tests, and distributions for
625.442, and 625.714) is a prerequisite or co-requisite for the multivariate mean vectors and covariance matrices. We also
others; the classes are intended to be complementary. Contact cover popular multivariate data analysis methods including
the instructor(s) should you have any questions about these multivariate data visualization, maximum likelihood, principal
courses. components analysis, multiple comparisons tests, multidimen-
Chin sional scaling, cluster analysis, discriminant analysis and mul-
tivariate analysis of variance, multiple regression and canonical
Graduate Programs
625.461 Linear Models and Regression correlation, and analysis of repeated measures data. Course
Introduction to regression and linear models including least work will include computer assignments.
squares estimation, maximum likelihood estimation, the Prerequisites: Linear algebra, multivariate calculus, and one
Gauss-Markoff Theorem, and the Fundamental Theorem of semester of graduate probability and statistics (e.g., 625.403).
Least Squares. Topics include estimation, hypothesis testing, Hung
simultaneous inference, model diagnostics, transformations,
625.464 Computational Statistics
multicollinearity, influence, model building, and variable
selection. Advanced topics include nonlinear regression, Computational statistics is a branch of mathematical sciences
robust regression, and generalized linear models including concerned with efficient methods for obtaining numerical
logistic and Poisson regression. solutions to statistically formulated problems. This course will
introduce students to a variety of computationally intensive
Prerequisites: One semester of statistics (such as 625.403),
statistical techniques and the role of computation as a tool of
multivariate calculus, and linear algebra.
discovery. Topics include numerical optimization in statistical
McQuarrie inference (expectation-maximization [EM] algorithm, Fisher
scoring, etc.), random number generation, Monte Carlo
625.462 Design and Analysis of Experiments methods, randomization methods, jackknife methods, boot-
Statistically designed experiments are the efficient allocation strap methods, tools for identification of structure in data,
of resources to maximize the amount of information obtained estimation of functions (orthogonal polynomials, splines,
with a minimum expenditure of time and effort. Design of etc.), and graphical methods. Additional topics may vary.
experiments is applicable to both physical experimentation and Course work will include computer assignments.
computer simulation models. This course covers the principles Prerequisites: Multivariate calculus, familiarity with basic
of experimental design, the analysis of variance method, the dif- matrix algebra, graduate course in probability and statistics
ference between fixed and random effects and between nested (such as 625.403).
and crossed effects, and the concept of confounded effects. The
Nickel
designs covered include completely random, randomized block,
Latin squares, split-plot, factorial, fractional factorial, nested 625.480 Cryptography
treatments and variance component analysis, response surface, An important concern in the information age is the security,
optimal, Latin hypercube, and Taguchi. Any experiment can protection, and integrity of electronic information, including
correctly be analyzed by learning how to construct the appli- communications, electronic funds transfer, power system con-
cable design structure diagram (Hasse diagrams). trol, transportation systems, and military and law enforcement
Prerequisites: Multivariate calculus, linear algebra, and one information. Modern cryptography, in applied mathematics,
semester of graduate probability and statistics (e.g., 625.403 is concerned not only with the design and exploration of
Statistical Methods and Data Analysis). Some computer- encryption schemes (classical cryptography) but also with the
based homework assignments will be given. rigorous analysis of any system that is designed to withstand
Bodt malicious attempts to tamper with, disturb, or destroy it. This
course introduces and surveys the field of modern cryptogra-
625.463 Multivariate Statistics and Stochastic phy. After mathematical preliminaries from probability the-
Analysis ory, algebra, computational complexity, and number theory,
Multivariate analysis arises with observations of more than one we will explore the following topics in the field: foundations
variable when there is some probabilistic linkage between the of cryptography, public key cryptography, probabilistic proof
variables. In practice, most data collected by researchers in vir- systems, pseudorandom generators, elliptic curve cryptogra-
tually all disciplines are multivariate in nature. In some cases, phy, and fundamental limits to information operations.
it might make sense to isolate each variable and study it sepa- Prerequisites: Linear algebra and an introductory course in
rately. In most cases, however, the variables are interrelated in probability and statistics such as 625.403 Statistical Methods
such a way that analyzing the variables in isolation may result and Data Analysis.
in failure to uncover critical patterns in the data. Multivariate Nakos
25
625.485 Number Theory Prerequisites: Introductory probability theory and/or statistics

This course covers principal ideas of classical number theory, (such as 625.403) and undergraduate-level exposure to algo-
including the fundamental theorem of arithmetic and its con- rithms and matrix algebra. Some familiarity with optimization
sequences, congruences, cryptography and the RSA method, and computing architectures is desirable, but not necessary.
polynomial congruences, primitive roots, residues, multiplica- Wood
tive functions, and special topics.
625.495 Time Series Analysis and Dynamic Modeling
Prerequisites: Multivariate calculus and linear algebra.
This course will be a rigorous and extensive introduction to
Stern modern methods of time series analysis and dynamic model-
ing. Topics to be covered include elementary time series mod-
Graduate Programs
625.487 Applied Topology els, trend and seasonality, stationary processes, Hilbert space
The course is both an introduction to topology and an inves- techniques, the spectral distribution function, autoregres-
tigation of various applications of topology in science and sive/integrated/moving average (ARIMA) processes, fitting
engineering. Topology, simply put, is a mathematical study of ARIMA models, forecasting, spectral analysis, the periodo-
shapes and it often turns out that just knowing a rough shape gram, spectral estimation techniques, multivariate time series,
of an object (whether that object is as concrete as platonic linear systems and optimal control, state-space models, and
solids or as abstract as the space of all paths in large complex Kalman filtering and prediction. Additional topics may be
networks) can enhance one’s understanding of the object. We covered if time permits. Some applications will be provided
will start with a few key theoretical concepts from point-set to illustrate the usefulness of the techniques.
topology with proofs, while letting breadth take precedence Prerequisites: Graduate course in probability and statistics
over depth, and then introduce key concepts from algebraic (such as 625.403); familiarity with matrix theory and linear
topology, which attempts to use algebraic concepts, mostly algebra.
group theory, to develop ideas of homotopy, homology, and Note: This course is also offered in the Department of Applied
cohomology which render topology “computable.” Finally, Mathematics and Statistics (Homewood campus).
we discuss a few key examples of real-world applications of Torcaso
computational topology, which is an emerging field devoted
to the study of efficient algorithms for topological problems, 625.703 Functions of a Complex Variable
especially those arising in science and engineering, which Topics include properties of complex numbers, analytic func-
builds upon classical results from algebraic topology as well tions, Cauchy’s theorem and integral formulas, Taylor and
as algorithmic tools from computational geometry and other Laurent series, singularities, contour integration and residues,
areas of computer science. The questions we like to ask are: Do and conformal mapping.
I know the topology of my network? What is a rough shape
Prerequisites: 625.401 Real Analysis, or 625.404 Ordinary
of the large data set that I am working with (is there a logical
Differential Equations, or permission of the instructor.
gap?) Will the local picture of a part of the sensor field I am
looking at give rise to a consistent global common picture? Weisman, Whisnant
Prerequisites: Multivariate calculus, linear algebra and matrix 625.710 Fourier Analysis with Applications to Signal
theory (e.g., 625.409), and an undergraduate-level course in Processing and Differential Equations
probability and statistics. This applied course covers the theory and application of Fou-
Chin rier analysis, including the Fourier transform, the Fourier
series, and the discrete Fourier transform. Motivation will be
625.490 Computational Complexity and provided by the theory of partial differential equations arising
Approximation in physics and engineering. We will also cover Fourier analysis
This course will cover the theory of computational complexity, in the more general setting of orthogonal function theory.
with a focus on popular approximation and optimization prob- Applications in signal processing will be discussed, including
lems and algorithms. It begins with important complexity con- the sampling theorem and aliasing, convolution theorems,
cepts including Turing machines, Karp and Turing reducibility, and spectral analysis. Finally, we will discuss the Laplace trans-
basic complexity classes, and the theory of NP-completeness. form, again with applications to differential equations.
It then discusses the complexity of well-known approximation Prerequisites: Familiarity with differential equations, linear
and optimization algorithms, and introduces approximabil- algebra, and real analysis.
ity properties, with special focus on approximation algorithm Spencer
and heuristic design. The impact of emerging computing
techniques, such as massive parallelism and quantum comput- 625.714 Introductory Stochastic Differential
ing, will also be discussed. The course will specifically target Equations with Applications
algorithms with practical significance and techniques that can The goal of this course is to give basic knowledge of stochastic
improve performance in real-world implementations. differential equations useful for scientific and engineering
26
modeling, guided by some problems in applications. The 625.721 Probability and Stochastic Process I
course treats basic theory of stochastic differential equations The course is an introduction to probability theory. Top-
including weak and strong approximation, efficient numerical ics include sample space, combinatorial analysis, conditional
methods and error estimates, the relation between stochas- probability, discrete and continuous distributions, expecta-
tic differential equations and partial differential equations, tion and generating functions, laws of large numbers, and
Monte Carlo simulations with applications in financial math- central limit theorem. This course is proof oriented and the
ematics, population growth models, parameter estimation, primary purpose is to lay the foundation for the second course
and filtering and optimal control problems. 625.722 and other specialized courses in probability.
Prerequisites: Multivariate calculus and a graduate course in Prerequisites: Multivariate calculus and 625.403 Statistical
probability and statistics. Exposure to ordinary differential Methods and Data Analysis or equivalent.
Graduate Programs
equations. Aminzadeh
Burkhardt
625.717 Advanced Differential Equations: Partial This course is an introduction to the theory of discrete-time
Differential Equations stochastic processes. Emphasis in the course is given to Pois-
This course presents practical methods for solving partial dif- son processes, renewal theory, renewal reward process, Mar-
ferential equations (PDEs). The course covers solutions of kov chains, continuous-time Markov chains, birth and death
hyperbolic, parabolic and elliptic equations in two or more process, Brownian motion, and random walks.
independent variables. Topics include Fourier series, separation Prerequisites: Differential equations and 625.721 Probability
of variables, existence and uniqueness theory for general higher and Stochastic Process I or equivalent.
order equations, eigenfunction expansions, finite difference and
Aminzadeh
finite element numerical methods, Green’s functions, and trans-
form methods. MATLAB, a high-level computing language, 625.725 Theory of Statistics I
is used throughout the course to complement the analytical
This course covers mathematical statistics and probability.
approach and to introduce numerical methods.
Topics covered include discrete and continuous probability
Prerequisites: 625.404 Ordinary Differential Equations or distributions, expected values, moment-generating functions,
equivalent graduate-level ODE class and knowledge of eigen- sampling theory, convergence concepts, and the central limit
values and eigenvectors from matrix theory. theorem. This course is a rigorous treatment of statistics that
Note: The standard undergraduate-level ODE class alone is lays the foundation for 625.726 and other advanced courses
not sufficient to meet the prerequisites for this class. in statistics.
Farris, Whisnant Prerequisites: Multivariate calculus and 625.403 Statistical
Methods and Data Analysis or equivalent.
625.718 Advanced Differential Equations:
Aminzadeh
Nonlinear Differential Equations and
Dynamical Systems 625.726 Theory of Statistics II
This course examines ordinary differential equations from a This course is the continuation of 625.725. It covers method
geometric point of view and involves significant use of phase- of moments estimation, maximum likelihood estimation, the
plane diagrams and associated concepts, including equilib- Cramér-Rao inequality, sufficiency and completeness of sta-
rium points, orbits, limit cycles, and domains of attraction. tistics, uniformly minimum variance unbiased estimators,
Various methods are discussed to determine existence and the Neyman-Pearson Lemma, the likelihood ratio test, good-
stability of equilibrium points and closed orbits. Methods are ness-of-fit tests, confidence intervals, selected non-parametric
discussed for analyzing nonlinear differential equations (e.g., methods, and decision theory.
linearization, direct, perturbation, and bifurcation analysis).
An introduction to chaos theory and Hamiltonian systems is Prerequisites: 625.725 Theory of Statistics I or equivalent.
also presented. The techniques learned will be applied to equa- Aminzadeh
tions from physics, engineering, biology, ecology, and neural
networks (as time permits). 625.728 Measure-Theoretic Probability
This course provides a rigorous, measure-theoretic introduc-
Prerequisites: 625.404 Ordinary Differential Equations or
tion to probability theory. It begins with the notion of fields,
equivalent graduate-level ODE class and knowledge of eigen-
sigma-fields, and measurable spaces, and also surveys elements
values and eigenvectors from matrix theory.
from integration theory and introduces random variables as
Note: The standard undergraduate-level ODE class alone is measurable functions. It then examines the axioms of prob-
not sufficient to meet the prerequisites for this class. 625.717 ability theory and fundamental concepts including condition-
is not required. ing, conditional probability and expectation, independence,
Farris, Whisnant and modes of convergence. Other topics covered include char-
acteristic functions, basic limit theorems (including the weak
27
and strong laws of large numbers), the central limit theorem, parties are involved. Since finding a firm mathematical foot-
and martingales. ing in 1928, it has been applied to many fields, including
Prerequisites: 625.401 Real Analysis and 625.403 Statistical economics, political science, foreign policy, and engineering.
Methods and Data Analysis. This course will serve both as an introduction to and a survey
of applications of game theory. Therefore, after covering the
Hill
mathematical foundational work with some measure of math-
625.734 Queuing Theory with Applications to ematical rigor, we will examine many real-world situations,
Computer Science both historical and current. Topics include two-person/N-
person game, cooperative/non-cooperative game, static/
Queues are a ubiquitous part of everyday life; common
dynamic game, combinatorial/strategic/coalitional game, and
examples are supermarket checkout stations, help desk call
Graduate Programs
their respective examples and applications. Further attention

centers, manufacturing assembly lines, wireless communica-
will be given to the meaning and the computational complex-
tion networks, and multitasking computers. Queuing theory
ity of finding of Nash equilibrium.
provides a rich and useful set of mathematical models for
the analysis and design of service process for which there is Prerequisites: Multivariate calculus, linear algebra and matrix
contention for shared resources. This course explores both theory (e.g., 625.409), and a course in probability and statis-
theory and application of fundamental and advanced models tics (such as 625.403).
in this field. Fundamental models include single and multiple Chin
server Markov queues, bulk arrival and bulk service processes,
and priority queues. Applications emphasize communication 625.743 Stochastic Optimization and Control
networks and computer operations, but may include examples Stochastic optimization plays an increasing role in the analysis
from transportation, manufacturing, and the service industry. and control of modern systems. This course introduces the
Advanced topics may vary. (This course is the same as 605.725 fundamental issues in stochastic search and optimization with
Queuing Theory with Applications.) special emphasis on cases where classical deterministic search
Prerequisites: Multivariate calculus and a graduate course in techniques (steepest descent, Newton-Raphson, linear and
probability and statistics such as 625.403. nonlinear programming, etc.) do not readily apply. These
Nickel cases include many important practical problems, which
will be briefly discussed throughout the course (e.g., neural
625.740 Data Mining network training, nonlinear control, experimental design,
Data mining is a relatively new term used in the academic and simulation-based optimization, sensor configuration, image
business world, often associated with the development and processing, discrete-event systems, etc.). Both global and
quantitative analysis of very large databases. Its definition cov- local optimization problems will be considered. Techniques
ers a wide spectrum of analytic and information technology such as random search, least mean squares (LMS), stochastic
topics, such as machine learning, pattern recognition, artifi- approximation, simulated annealing, evolutionary computa-
cial intelligence, statistical modeling, and efficient database tion (including genetic algorithms), and machine learning
development. This course will review these broad topics, and are discussed.
cover specific analytic and modeling techniques such as data Prerequisites: Multivariate calculus, linear algebra, and one
cleaning techniques, principal components, regression, deci- semester of graduate probability and statistics (e.g., 625.403
sion trees, neural networks, support vector machines, nearest Statistical Methods and Data Analysis). Some computer-based
neighbor, clustering, association rules, generalization error, homework assignments will be given. It is recommended that
and the holdout, cross-validation, and bootstrap methods. this course only be taken in the last half of a student’s degree
Mathematics underlying these techniques will be discussed program.
and their application to real-world data will be illustrated. Spall
Because use of the computer is extremely important
when “mining” large amounts of data, we will make substan- 625.744 Modeling, Simulation, and Monte Carlo
tial use of data mining software tools to learn the techniques
Computer simulation and related Monte Carlo methods
and analyze datasets.
are widely used in engineering, scientific, and other work.
Prerequisites: Multivariate calculus, linear algebra, and matrix Simulation provides a powerful tool for the analysis of real-
theory (e.g., 625.409), and a course in probability and statis- world systems when the system is not amenable to traditional
tics (such as 625.403). This course will also assume familiarity analytical approaches. In fact, recent advances in hardware,
with multiple linear regression and basic ability to program. software, and user interfaces have made simulation a “first
Weisman line” method of attack for a growing number of problems.
Areas where simulation-based approaches have emerged as
625.741 Game Theory indispensable include decision aiding, prototype develop-
Game theory is a field of applied mathematics that describes ment, performance prediction, scheduling, and computer-
and analyzes interactive decision making when two or more based personnel training. This course introduces concepts and
28
statistical techniques that are critical to constructing and ana- 625.800 Independent Study in Applied and
lyzing effective simulations, and discusses certain applications Computational Mathematics
for simulation and Monte Carlo methods. Topics include An individually tailored, supervised project on a subject relat-
random number generation, simulation-based optimization, ed to applied and computational mathematics. A maximum
model building, bias-variance tradeoff, input selection using of one independent study course may be applied toward the
experimental design, Markov chain Monte Carlo (MCMC), Master of Science degree or post-master’s certificate. This
and numerical integration. course may only be taken in the second half of a student’s
Prerequisites: Multivariate calculus, familiarity with basic degree program. All independent studies must be supervised
matrix algebra, graduate course in probability and statistics by an ACM instructor and must rely on material from prior
(such as 625.403). Some computer-based homework assign- ACM courses. The independent study project proposal form
Graduate Programs
ments will be given. It is recommended that this course only must be approved prior to registration.
be taken in the last half of a student’s degree program. Staff
Spall
29
Applied Biomedical Engineering
Applied Biomedical completed an equivalent graduate level course or can demon-

strate competency. Students may also select graduate electives
Engineering
from the Department of Biomedical Engineering, which are
listed in Section IV, with the approval of their advisor and
the instructor. These courses are offered either at the medical
Biomedical engineering is the application of knowledge from school or Homewood campuses at their regularly scheduled
engineering and physics to enhance the understanding of and hours during the day. With the approval of their advisor, stu-
provide solutions to problems in biology and medicine. The dents may also partially fulfill the elective requirement with
goal of the Master of Science in Applied Biomedical Engi- related courses offered through the part-time programs of the
neering program is to educate and train practicing scientists Krieger School of Arts and Sciences. At least four electives
and engineers to be able to carry out engineering-oriented
Graduate Programs
must be for advanced graduate credit, i.e., at the 600-, 700-,

research and development in the biomedical sciences. or 800-level. Students are required to file a program plan
The strength of the Applied Biomedical Engineer- listing the courses they plan to take. The complete program
ing program lies in the active involvement of the faculty plan must be approved by the student’s advisor.
in research and development. The majority of the courses
are offered at the APL campus; however, some electives are Course Descriptions
offered only at the Homewood campus. Please refer to the Course Schedule published each term for
exact dates, times, locations, fees, and instructors.
Program Committee
Eileen Haase, Program Chair I. Noncredit Courses
Instructor, Biomedical Engineering A noncredit course in mathematics is offered for those who
Whiting School of Engineering may need it to satisfy the eligibility requirements for admis-
sion or to refresh their knowledge. The noncredit math-
Isaac N. Bankman, Program Vice-Chair ematics course is offered in the applied and computational
Principal Professional Staff, Applied Physics Laboratory mathematics program.
Assistant Professor of Biomedical Engineering, 585.209 Organic Chemistry
School of Medicine 625.201 General Applied Mathematics
Murray B. Sachs
Principal Professional Staff, Applied Physics Laboratory II. Required Courses
Professor of Biomedical Engineering, School of Medicine Five one-semester courses depending upon the concentra-
tion area:
Admission Requirements Instrumentation Concentration
Applicants must meet the general requirements for admis- 585.405-406 Physiology for Applied Biomedical
sion to a graduate program outlined in this catalog in the Engineering
Admission Requirements section. In addition, the applicant 585.408 Medical Sensors and Devices
must have compiled an average of B (3.0 on a 4.0 scale) or
585.409 Mathematical Methods for Applied Bio-
above for all courses in mathematics, physics, engineering,
medical Engineering
and the other physical and biological sciences. The applicant’s
preparation must have included: (1) mathematics, through Laboratories: 585.800, 580.423 & 424, 580.717, or 580.495
ordinary differential equations; (2) calculus-based physics, Imaging Concentration
including mechanics, heat and energy, electricity and magne-
585.405-406 Physiology for Applied Biomedical
tism, and elementary quantum concepts, and (3) chemistry.
Engineering
Noncredit courses in organic chemistry and mathematics are
585.408 Medical Sensors and Devices
offered for those who may need them to satisfy the eligibility
requirements or to refresh their knowledge. The noncredit 585.409 Mathematical Methods for Applied
mathematics course is offered in the Applied and Computa- Biomedical Engineering
tional Mathematics program. Laboratories: 585.800, 580.423 & 424, or Homewood
Imaging Course
Course Requirements Biomaterials Concentration
A total of 10 one-semester courses must be completed within
585.405-406 Physiology for Applied Biomedical
five years. The curriculum consists of five required courses
Engineering
listed in Section II of this program. Students may complete
585.407 Molecular Biology
their five remaining courses by choosing among the elective
courses offered through the Applied Biomedical Engineering 585.608 Biomaterials
curriculum, listed in Section III. An elective course may be Laboratories: 585.800. 580.423 & 424, 580.451/452 (1/2),
substituted for a required course if the student has previously or 580.420
30
Systems Biology Concentration 580.451/452 Cellular and Tissue Engineering

This concentration includes Computational Biology. Laboratory
585.405-406 Physiology for Applied Biomedical 580.466 Statistical Methods in Imaging
Engineering 580.471 Principles of the Design of Biomedical
585.407 Molecular Biology Instrumentation II: Physiological and
585.409 Mathematical Methods for Applied Clinical
Biomedical Engineering 580.473 Modern Biomedical Imaging,
Laboratories: 585.800, 580.423 & 424, 580.717, or 580.495 Instrumentation, and Techniques
580.476 Magnetic Resonance in Medicine
III. Elective Courses 580.477 Advanced Topics in Magnetic Resonance
Graduate Programs
The following elective courses are offered at the Applied Imaging
Physics Laboratory or the Dorsey Center. 580.488/688 Foundations of Computational
585.605 Medical Imaging Biology and Bioinformatics II
585.606 Medical Image Processing 580.491/691 Learning Theory
585.607 Medical Imaging II: MRI 580.495 Microfabrication Laboratory
585.608 Biomaterials 580.616 Introduction to Linear Systems
585.609 Cell Mechanics 580.625-626 Structure and Function of the Auditory
585.610 Biochemical Sensors and Vestibular Systems
585.611 Practices of Biomedical Engineering 580.628 Topics in Systems Neuroscience
585.614 Applications of Physics and Technology to 580.630 Theoretical Neuroscience
Biomedicine 580.632 Ionic Channels in Excitable Membranes
585.618 Biological Fluid and Solid Mechanics 580.637 Contemporary Topics in the Engineering of
585.620 Orthopedic Biomechanics Cardiac Tissue
585.624 Neural Prosthetics: Science, Technology, 580.639 Models of Physiological Processes in
and Applications the Neuron
585.626 Biomimetics in Biomedical Engineering 580.641 Cellular Engineering
585.634 Biophotonics 580.642 Tissue Engineering
585.800 Special Project in Applied Biomedical 580.651 Introduction to Nonlinear Dynamics
Engineering in Physiology
585.801 Directed Studies in Applied Biomedical 580.673 Magnetic Resonance in Medicine
Engineering 580.677 Advanced Topics in Magnetic Resonance
The following elective courses are offered during the day at Imaging
the Homewood campus or the medical school. (These may be 580.682 Computational Models of the
taken for credit if the prerequisites can be satisfied and with Cardiac Myocyte
the approval of the instructor.) 580.688 Foundations of Computational Biology
580.420 Build-a-Genome and Bioinformatics II
580.423/424 Laboratory in Systems Bioengineering, I 580.690 Systems Biology of Cell Regulation
and II 580.702-703 Neuroengineering Seminar
580.448 Biomechanics of Cells and Organisms 580.771 Principles of Biomedical Instrumentation
Course Descriptions
585.209 Organic Chemistry 585.405-406 Physiology for Applied Biomedical
This course offers an in-depth review and study of organic Engineering
chemistry. Topics include the fundamental chemistry of This two-semester sequence is designed to provide the physi-
carbon compounds, chemical bonding, synthesis, reaction ological background necessary for advanced work in biomed-
mechanisms, and stereochemistry. The role of organic chemical engineering. A quantitative model-oriented approach to
istry in biology and medicine, environmental science, and physiological systems is stressed. First-term topics include
industry is discussed. (Not for credit for the Master of Science the cell and its chemistry, transport and the cell membrane,
in Applied Biomedical Engineering degree.) properties of excitable tissue and muscle, the cardiovascular
Potember system, and the respiratory system. The second-term course
covers anatomy of the nervous system, structure and func-
31
tions of the auditory and visual systems, motor systems, the 585.605 Medical Imaging
kidney and gastrointestinal tract, and the neural and neuro- This course examines fundamental physical concepts, instru-
endocrine control of the circulation. mentation, and signal processing techniques used to produce
Berman, Haase, Staff images in radiography, ultrasonography, tomography, mag-
netic resonance imaging, and nuclear medicine.
585.407 Molecular Biology Prerequisite: 585.409 Mathematical Methods for Applied
The course is intended to serve as a fundamental introduc- Biomedical Engineering or equivalent.
tion to cell and molecular biology. Topics generally included Fainchtein, Staff
are basic chemistry and biochemistry of the cell; structure,
function, and dynamics of macromolecules; cell organiza- 585.606 Medical Image Processing
Graduate Programs
tion; enzyme kinetics; membranes and membrane transport; This course covers digital image processing techniques used
biochemistry of cellular energy cycles, including oxidative for the analysis of medical images such as x-ray, ultrasound,
phosphorylation; replication, transcription, and transla- CT, MRI, PET, microscopy, etc. The presented image
tion; regulation of gene expression; and recombinant DNA enhancement algorithms are used for improving the visibility
technology. Where appropriate, biomedical application and of significant structures as well as for facilitating subsequent
devices based on principles from cell and molecular biology, automated processing. The localization and identification of
are emphasized. target structures in medical images are addressed with several
Prerequisite: 585.209 Organic Chemistry. segmentation and pattern recognition algorithms of moder-
ate complexity. Image reconstruction algorithms used for
DiNovo-Collela, Potember three-dimensional image formation are presented. The course
covers image registration algorithms used to determine the
585.408 Medical Sensors and Devices correspondence of multiple images of the same anatomical
This course covers the basic and advanced principles, con- structure. Image compression algorithms applied to medical
cepts, and operations of medical sensors and devices. The images are also addressed.
origin and nature of measurable physiological signals are Prerequisite: Familiarity with linear algebra and Fourier
studied, including chemical, electrochemical, optical, and transforms.
electromagnetic signals. The principles and devices to make
Bankman, Pham, Spisz
the measurements, including a variety of electrodes and sen-
sors, will be first discussed. This will be followed by a rigorous 585.607 Medical Imaging II: MRI
presentation of the design of appropriate electronic instru-
Following the increasing use and development of new MRI
mentation. Therapeutic instrumentation such as pacemak-
methods, a course on advanced MRI concepts and applica-
ers, defibrillators, and prosthetic devices will be reviewed.
tions was designed as part of the imaging area of emphasis.
The final part of this course will cover emerging frontiers
Medical Imaging II provides more information on the phys-
of cellular and molecular instrumentation and the use of
ics, imaging procedures, and advanced techniques of MRI,
micro- and nanotechnology in these biotechnology fields.
and also includes two lectures on nuclear medicine.
The lectures will be followed by realistic experimentation in
two laboratory sessions where students will obtain hands-on Prerequisite: 585.409 Mathematical Methods for Applied
experience with electronic components, sensors, biopotential Biomedical Engineering or equivalent.
measurements, and testing of therapeutic instrumentation. Spencer
Thakor, Staff 585.608 Biomaterials
This course covers the fundamentals of the synthesis, proper-
585.409 Mathematical Methods for Applied
ties, and biocompatibility of metallic, ceramic, polymeric,
Biomedical Engineering
and biological materials that come in contact with tissue and
The course covers mathematical techniques needed to solve biological fluids. Emphasis is placed on using biomaterials
advanced problems encountered in applied biomedical engi- for both hard and soft tissue replacement, organ replace-
neering. Fundamental concepts are presented with emphasis ment, coatings and adhesives, dental implants, and drug
placed on applications of these techniques to biomedical delivery systems. New trends in biomaterials, such as electri-
engineering problems. Topics include solution of ordinary cally conductive polymers, piezoelectric biomaterials, and
differential equations using the Laplace transformation, Fou- sol-gel processing are discussed, and the recent merging of
rier series and integrals, solution of partial differential equa- cell biology and biochemistry with materials is examined.
tions including the use of Bessel functions and Legendre Case studies and in-class scenarios are frequently used to
polynomials and an introduction to complex analysis. highlight the current opportunities and challenges of using
Prerequisite: Familiarity with multi-variable calculus, linear biomaterials in medicine.
algebra, and ordinary differential equations. Prerequisite: 585.209 Organic Chemistry.
Rio Potember
32
585.609 Cell Mechanics pressure); biomedical optics (e.g., microscopy, optical coher-
The class starts with introductory lectures on the place of cell ence tomography); neural signal processing; medical image
mechanics in the broader areas of cell biology, physiology, processing; and MRI. Topics will be presented by instructors
and biophysics, where the general topics of cell structure, who are actively engaged in research in the various areas.
motility, force generation, and interaction with the extracel- McCally, Staff
lular matrix are considered. Three important case studies are
discussed: blood cells, vascular endothelial cells, and cochlear 585.618 Biological Fluid and Solid Mechanics
hair cells. The analysis of each of these cases includes constitu- The goal of this class is to learn the relation between the
tive relations, experiments to estimate cellular parameters, and mechanics and physiology (biology) of tissues and cells. This
biological and physiological implications. The constitutive relation is demonstrated by introducing general models of
Graduate Programs
relations are based on nonlinear viscoelasticity in the cases of solid and fluid mechanics and applying them to the cardio-
blood and endothelial cells and linear piezoelectricity in the vascular system and bones. In particular, the arterial wall and
case of hair cells. The necessary components of engineering endothelial cell mechanics as well as bone anisotropic proper-
mechanics of solids and fluids are introduced. The effective ties and remodeling are discussed. The course also shows how
mechanical characteristics of the cell are related to the struc- theoretical models are used to interpret experiments and how
ture and properties of the cellular membrane, cytoskeleton, experimental data are used to estimate important parameters
and nucleus. Micropipette aspiration, atomic force microsco- (constants) of the models. Experiments with biaxial stretch-
py, and magnetic cytometry techniques are discussed in detail. ing, micropipette aspiration, and atomic force microscopy
Students also read and make presentations of original journal commonly used to probe the mechanical properties of tissues
papers covering additional topics, which exposes them to the and cells are discussed in detail. The models include aniso-
professional literature and hones their communication skills. tropic linear elasticity, nonlinear elasticity, viscoelasticity, and
Spector Newtonian (non-Newtonian) fluid dynamics.
Spector
585.610 Biochemical Sensors
This course covers the fundamental principles and practi- 585.620 Orthopedic Biomechanics
cal aspects of chemical sensing of physiological signals. The This course serves as an introduction to the field of ortho-
focus of the course is on the electrochemistry and biophysical pedic biomechanics for the biomedical engineer. Structure
chemistry of biological sensing elements and their integra- and function of the musculoskeletal system in the intact
tion with signal transducers. Other topics covered include and pathologic states will be reviewed. Further discussion
design and construction of practical sensors, processing and will focus on the design of orthopedic implants for the spine
interpretation of signal outputs, and emerging technologies and the appendicular skeleton. Biomechanical principles of
for biosensing. fracture repair and joint reconstruction will also be addressed.
Bryden, Potember Peer-reviewed journal publications will be used to explore the
latest developments in this field.
585.611 Practices of Biomedical Engineering Prerequisites: 585.405-406 Physiology for Applied Biomedi-
The goal of this course is to present a methodical approach to cal Engineering (or equivalent).
practical biomedical engineering. The topics include innova- Dimitriev
tion in research and engineering; contracting with the federal
government; writing business plans and technical proposals; 585.624 Neural Prosthetics: Science, Technology,
legal issues such as liability, patents, and the FDA approval and Applications
process; the practice of biomedical engineering in industry; This course addresses the scientific bases, technologies,
approaches to biomedical problems, including systems engi- and chronic viability of emerging neuroprosthetic devices.
neering and prototyping; and other issues involved in manag- Examples include cochlear and retinal implants for sensory
ing a research program such as marketing, sales, service, and restoration, cortical and peripheral nervous system and brain
other economic factors. A team of leading biomedical engi- computer interface devices for deriving motor control and
neers and technical program managers teaches the course. enabling afferent feedback, rehabilitative and therapeutic
Potember, Staff devices such as deep brain stimulators for Parkinson’s dis-
ease, functional electrical stimulation systems for spinal cord
585.614 Applications of Physics and Technology to injuries, and cognitive prosthetic systems for addressing brain
Biomedicine trauma. Regulatory (FDA) challenges with emerging tech-
The goal of this course is to expose students to several con- nologies and ethical considerations will also be addressed.
crete examples of how physical and technological methods Harshbarger, Staff
are used in biomedicine. Examples will be chosen from
ophthalmology (e.g., how the optical properties of the eye’s 585.626 Biomimetics in Biomedical Engineering
cornea are related to its ultrastructure, applications of lasers, Biomimetics refers to human-made processes, substances,
methods of measuring ocular blood flow and intraocular devices or systems that imitate nature. This course focuses
33
on substances prepared and engineered to meet biomedical anatomy of the central auditory and vestibular systems, and
uses. It is designed to provide students with: 1) an under- synaptic transmission and signal processing in central neu-
standing of the biomimetic process of self-assembly, 2) an rons. Aspects of hearing and balance such as speech percep-
introduction to bioengineering biological materials and novel tion, sound localization, vestibular reflexes, and vestibular
biomimetic materials that include forms and structures use- compensation are discussed with an integrated perspective
ful to bioprocesses, and 3) an understanding of how differ- covering perceptual, physiological, and mechanistic data.
ent instruments may be used for imaging, identification, Prerequisites: 585.405-406 Physiology for Applied Biomedi-
and characterization of biological and biomimetic materials. cal Engineering or equivalent.
Detailed knowledge of biological structure hierarchy is essen- Recommended: 110.302 Differential Equations; 520.214 Sig-
tial for most areas of biomedical engineering, and biological nals and Systems.
Graduate Programs
materials are becoming an increasingly important resource

Hearing Science Center Staff
in creating new biomimetic materials that possess targeted
biological structural and functional properties. 580.628 Modeling the Auditory System
Deacon, Trexler Intended as a complement to 580.625-626, this course cov-
ers the physiology of hearing from a model-oriented view-
585.634 Biophotonics point. Topics include basilar membrane mechanics, models
This course introduces the fundamental principles of bio- of cochlear transduction, stochastic process models of neural
photonics and their applications to real-world devices. In a discharge, detection of theoretic approaches to relating physi-
combination of laboratory and classroom exercises, students ological and psychological data, models of signal processing
will design optical systems for evaluation of optical proper- in central auditory nuclei, and nonlinear methods of charac-
ties of biological media and learn computational methods to terizing neurons.
simulate light transport in such media. Modern optical mea- Prerequisites: 585.405-406 Physiology for Applied Biomedi-
surement techniques including fluorescence spectroscopy, cal Engineering, or equivalent, 585.409 Mathematical Meth-
optical coherence tomography, and confocal microscopy will ods for Applied Biomedical Engineering.
be covered in detail.
Recommended: 520.214 Signals and Systems or equivalent.
Ramella-Roman, Sova
Sachs, Young
585.800 Special Project in Applied Biomedical
580.630 Theoretical Neuroscience
Engineering
This course covers theoretical methods for analyzing informa-
This course is an individually tailored, supervised project tion encoding and representing function in neural systems,
that offers the student research experience through work on including models of single and multiple neural spike trains
a special problem related to the student’s specialty of inter- based on stochastic processes and information theory, detec-
est. The research problem can be addressed experimentally or tion and estimation of behaviorally relevant parameters from
analytically. A written report is produced on which the grade spike trains, system theoretic methods for analyzing sensory
is based. The applied biomedical engineering project proposal receptive fields, and network models of neural systems. Both
form must be completed prior to registration. theoretical methods and the properties of specific well-stud-
Prerequisite: Permission of the instructor. ied neural systems will be discussed.
Staff Prerequisites: Introduction to Neuroscience (585.406 or
equivalent), 550.420 Probability or equivalent, and 520.214
585.801 Directed Studies in Applied Biomedical
Signals and Systems.
Engineering
Wang, Young
The course permits the student to investigate possible research
fields or pursue topics of interest through reading or non- 580.632 Ionic Channels in Excitable Membranes
laboratory study under the direction of a faculty member. Ionic channels are key signaling molecules that support elec-
The applied biomedical engineering directed studies program trical communication throughout the body. As such, these
proposal form must be completed prior to registration. channels are a central focus of biomedical engineering as it
Prerequisite: Permission of the instructor. relates to neuroscience, computational biology, biophysics,
Staff and drug discovery. This course introduces the engineering
(stochastic and mathematical models) and molecular strate-
580.625-626 Structure and Function of the gies (cloning and expression) used to understand the func-
Auditory and Vestibular Systems tion of ionic channels. The course also surveys key papers
This course covers the physiological mechanisms of hear- that paint the current picture of how channels open (gat-
ing and balance. Topics include transmission of sound in ing) and conduct ions (permeation). Biological implications
the ear, transduction of sound and head orientation by hair of these properties are emphasized throughout. Finally, the
cells, biophysics and biochemistry of hair cells, representation course introduces how optical (fluorescence methods) and
of sound and balance in eighth-nerve discharge patterns, electrophysiological methods (patch clamp) now promise to
34
revolutionize understanding of ionic channels. This course 580.641 Cellular Engineering

can be viewed as a valuable partner of Models of Physiologi- This course focuses on principles and applications in cell
cal Processes in the Neuron (580.439). Advanced homework engineering. Class lectures include an overview of molecu-
problems, paper presentations, and exam questions are added lar biology fundamentals, protein/ligand binding, receptor/
to the core curriculum. ligand trafficking, cell-cell interactions, cell-matrix interac-
Prerequisites: 585.405-406 Physiology for Applied Biomedi- tions, and cell adhesion and migration at both theoretical and
cal Engineering or equivalent. experimental levels. Lectures will cover the effects of physical
(e.g. shear stress, strain), chemical (e.g. cytokines, growth
Recommended: 585.409 Mathematical Methods for Applied
factors) and electrical stimuli on cell function, emphasizing
Biomedical Engineering, signals, and elementary probability.
topics on gene regulation and signal transduction processes.
Yue
Graduate Programs
Furthermore, topics in metabolic engineering, enzyme evolu-
tion, polymeric biomaterials, and drug and gene delivery will
580.634 Molecular and Cellular Systems Physiology
be discussed. This course is intended as Part 1 of a two-semes-
Laboratory
ter sequence recommended for students interested in the Cell
This course provides laboratory experience in cell imaging, and Tissue Engineering focus area. Meets with 580.441.
motility, and excitation; stochastic simulation of ionic chan-
Prerequisites: 585.407 Molecular Biology or equivalent,
nel gating; and expression and biophysical characterization of
585.405-406 Physiology for Applied Biomedical Engineer-
cloned and native ionic channels. Students work on one or
ing or equivalent.
two projects from this set, under faculty supervision.
Green, Yarema
Prerequisite: 585.405-406 Physiology for Applied Biomedical
Engineering or equivalent. 580.642 Tissue Engineering
Tung, Yue This course focuses on the application of engineering fun-
damentals to designing biological tissue substitutes. Con-
580.637 Cellular and Tissue Engineering cepts of tissue development, structure and function will be
This is an advanced course on the latest research accomplish- introduced. Students will learn to recognize the majority of
ments on cellular and tissue engineering from three different histological tissue structures in the body and understand
interdisciplinary perspectives: 1) it summarizes the theoreti- the basic building blocks of the tissue and clinical need
cal/experimental tools to investigate adhesion mechanisms for replacement. The engineering components required to
and differentiated functions of cells attached on surfaces, 2) it develop tissue-engineered grafts will be explored including
examines the signal transduction and regulation of metabolic biomechanics and transport phenomena along with the use
activity in mammalian cells due to physical (mechanical) of biomaterials and bioreactors to regulate the cellular micro-
forces, and 3) it highlights the mechanisms of cell motility environment. Emphasis will be placed on different sources of
and morphogenesis of anchored cells, and the mechanical stem cells and their applications to tissue engineering. Clini-
properties of circulating cells. cal and regulatory perspectives will be discussed.
Prerequisites: 585.407 Molecular Biology or equivalent, Prerequisites: 585.407 Molecular Biology or equivalent,
585.405-406 Physiology for Applied Biomedical Engineer- 585.405-406 Physiology for Applied Biomedical Engineer-
ing or equivalent. ing or equivalent.
Kuo, Popel Elisseeff, Grayson
580.644 Neural Control of Movement and

580.638 Cell Mechanics and Motility
Vocalization
Fundamental to their function, cells generate and respond
Generating a sound with our vocal system or moving our
to mechanical forces. For example, whole muscle cells con-
arm is an example of a goal-directed movement. This is a
tract, but all cells must move chromosomes during cell divi-
course that compares the neural mechanisms responsible for
sion. This class will cover macroscopic mechanics of cells
acquisition of sensory information and generation of motion
and their cytoskeleton, physical models of force generation,
in these two motor behaviors. We will explore the brain
and molecular models derived from recent atomic structures
systems that integrate 1) visual and somatosensory informa-
of force-generating proteins. Clinical effects, such as car-
tion in order to produce limb movements, and 2) auditory
diomyopathies where these processes are defective, and new
information in order to vocalize a sound. Emphasis is on
molecular measurement technologies will also be discussed.
experimental and theoretical results on the primate brain.
An interdisciplinary approach spanning molecular biology,
biochemistry, physics, and engineering will be emphasized. Prerequisite: 585.406 Physiology for Applied Biomedical
Engineering or equivalent course in neuroscience.
Prerequisite: 585.407 Molecular Biology or equivalent,
Shadmehr, Wang
585.405-406 Physiology for Applied Biomedical Engineer-
ing or equivalent.
Kuo
35
580.651 Introduction to Nonlinear Dynamics in 580.683 High Performance Computing in Biology

Physiology This course trains students in the use of high performance
This course is designed for students who may be interested in computing systems to solve problems in biological model-
applying the techniques of nonlinear dynamics and chaos to ing. Lecture topics include: 1) review of high performance
the analysis of physiological data. Topics covered will include computing in molecular modeling, biological fluid dynam-
fractals, strange attractors, bifurcations, state-space attractor ics and transport, and cell network modeling, 2) efficient
reconstruction, Poincaré sections, dimension calculations, numerical methods for use on high performance computing
Lyapunov exponents, entropy, tests for determinism, non- systems, and 3) architecture and programming of the sym-
linear forecasting. Examples will be drawn from studies in metric vector processor and the symmetric multiprocessing
cardiology, brain function, and the oculomotor system. Silicon Graphics Power Challenge XL systems. Material is
Graduate Programs
Prerequisites: 585.405-406 Physiology for Applied Biomedi- presented both in lectures and supervised laboratory sessions,
cal Engineering or equivalent, 585.409 Mathematical Meth- during which students do interactive programming.
ods for Applied Biomedical Engineering, basic knowledge Prerequisites: Introductory programming, UNIX, 585.409
of signals and systems or permission of instructor. Limited Mathematical Methods for Applied Biomedical Engineering
enrollment. (differential equations and linear algebra).
Shelhamer Jafri, Winslow
580.673 Advanced Seminar in Magnetic Resonance 580.684 Experimental Foundations for Neural Models
Imaging This course familiarizes students with the experimental tools
In this course, students present an idea from the current that are used to provide the biological data base for neural
literature to the class in two two-hour seminars and write a models. Projects are designed to teach single unit recording
10-20 page review article on the same topic. At the end of the in sensory nerve, characterization of complex receptive fields,
course the class produces a book of these articles. Recent top- cellular or synaptic potential measurement, evoked potential
ics include: rf and gradient coil design, flow measurements techniques, and psychophysical measurement of sensory or
with MRI and contrast injection, sub-second MRI, methods motor function.
for designing rf pulse shapes, diffusion measurements with Prerequisites: 585. 406 Physiology for Applied Biomedical
MRI, absolute quantification of metabolites with MRS, and Engineering or equivalent introductory course on the ner-
cardiac MRI. Future topics include: adiabatic pulses in MRI vous system, and permission of instructor.
and spectroscopy, motion artifact reduction, reconstruction Sachs, Staff
strategies in reduced k-space MRI, thermal and mechanical
580.688 Foundations of Computation Biology and
requirements for MRI hardware, patient safety, induced cur-
Bioinformatics II
rents from rapidly switching gradients, and rf heating.
This course will introduce probabilistic modeling and
Prerequisites: 580.472-473 Medical Imaging Systems and information theory applied to biological sequence analysis,
Magnetic Resonance in Medicine or equivalent. focusing on statistical models of protein families, alignment
McVeigh algorithms, and models of evolution. Topics will include
probability theory, score matrices, hidden Markov models,
580.682 Computational Models of the Cardiac
maximum likelihood, expectation maximization and dynam-
Myocyte
ic programming algorithms. Homework assignments will
The cardiac myocyte is one of the most extensively studied require programming in Python. Foundations of Computa-
cells in biology. As such, it serves as an important example of tional Biology I is not a prerequisite.
how to develop quantitative, dynamic, computational mod-
Prerequisites: 585.407 Molecular Biology and 585.409 Math-
els of cell function. This course will present a comprehensive
ematical Methods for Applied Biomedical Engineering.
review of all aspects of modeling of the cardiac myocyte as an
introduction to the discipline of computational cell biology. Karchin
Students will read and present key papers from the literature, 580.690 Systems Biology of Cell Regulation
implement and study computer models of the cardiac myo- This course will explore the recent advances in systems biol-
cyte, and complete a project. Requirements are knowledge ogy analysis of intracellular processes. Examples of the mod-
of a programming language (MATLAB, C, C++, Java are eling and experimental studies of metabolic, genetic, signal
satisfactory), a course in ordinary differential equations, and transduction and cell cycle regulation networks will be stud-
an introductory course in molecular and/or systems biology. ied in detail. The classes will alternate between consideration
Prerequisites: 585.405-406 Physiology for Applied Biomedi- of network-driven and network element (gene, metabolite or
cal Engineering or equivalent, 585.409 Mathematical Meth- protein)-driven approaches.
ods for Applied Biomedical Engineering. Prerequisites: 110.201, 110.302 or equivalent.
Greenstein, Winslow Recommended: advanced biology.
Levchenko
36
580.702 Neuroengineering
Neuroengineering represents the application of engineering
principles to develop systems for neurological research and
clinical applications. This involves design of instrumenta-
tion for brain monitoring; development of signal processing
methods to analyze brain rhythms; contemporary imaging
methods ranging from optical/CT/MRI; use of micro and
nanotechnologies to probe from neurons and brain; and
development and application of neural stimulators, pros-
theses, deep brain stimulations, and robotic/image guided
Graduate Programs
therapeutic devices. The course will review and research the
state of the art in selected fields and support research and
development projects by students in these topics.
Prerequisites: 585.406 Physiology for Applied Biomedical
Engineering or equivalent introductory course on the ner-
vous system and permission of instructor.
Staff
37
Applied Physics
Applied Physics physics, intermediate mechanics, and intermediate electricity

and magnetism. The intermediate mechanics and intermedi-
ate electricity and magnetism requirements may be waived if
The applied physicist bridges the gap between pure physics
the applicant has an exceptionally good grade point average
and engineering by conducting research on technical appli-
and a strong background in mathematics.
cations of natural phenomena. The hallmark of the applied
physicist is the ability to conceive solutions by applying fun-
damental physical principles to complex problems. Course Requirements and Course Descriptions
The graduate program in applied physics leads to the A total of 10 one-term courses must be completed within
Master of Science degree and is designed to develop profes- five years. The core curriculum requires four courses, with at
sionals with broad capabilities appropriate for careers in tech- least three courses selected from a group of six designed to
Graduate Programs
nical research or advanced graduate study. Because of today’s provide a mastery of physical principles (mathematical phys-
changing technology, the program encompasses a wide range ics, electromagnetics, quantum mechanics, classical mechan-
of topics, enabling the graduate to contribute solutions to a ics, statistical mechanics and thermodynamics, and modern
variety of physics problems. The faculty of the applied phys- physics). The fourth core course can be selected from either
ics program is drawn predominantly from the staff of the the basic physical principal offerings above or from a group
Applied Physics Laboratory. Faculty interests and expertise of three courses (Principles of Optics, Materials Science, and
include the following areas of specialization: ocean sciences, Physical System Modeling) that provide an introduction to
optics, solid state physics, materials, and space sciences. In the three primary curriculum concentration areas (geophysical
their areas of research, the faculty members collaborate with and space sciences, photonics, and materials and condensed
colleagues from various divisions of the University as well as matter). Four of the remaining six courses must be selected
with scientists and engineers at other national and interna- from among the applied physics courses listed below, and
tional laboratories. may follow a particular concentration or contain a variety of
applied physics courses. The two remaining courses may be
Program Committee selected from any of the offerings of the Whiting School of
Engineering with the approval of the student’s advisor.
Harry K. Charles Jr., Program Chair
Four of the 10 courses required for the degree must be
Principal Professional Staff at the 700- or 800-level. With the advisor’s approval, an elec-
Applied Physics Laboratory tive course may be substituted for a required course if the
Robert C. Cammarata student has previously completed an equivalent graduate-level
Professor, Materials Science and Engineering course. Academic standards governing graduate study must
Whiting School of Engineering be maintained.
Neither a thesis nor knowledge of a foreign language is
Richard F. Gasparovic
required in this program.
Applied Physics Laboratory Courses numbered 600-level and above are open only to
those students who have been admitted for graduate study.
David L. Porter Some courses may not be offered every year. Please refer to the
Principal Professional Staff Course Schedule published each term for exact dates, times,
Applied Physics Laboratory locations, fees, and instructors.
John C. Sommerer
I. Required Courses
Applied Physics Laboratory Four one-term courses, with at least three selected from the
first six courses below:
Joseph J. Suter
615.441 Mathematical Methods for Physics and
Engineering
615.442 Electromagnetics
Michael E. Thomas
615.451 Statistical Mechanics and Thermodynamics
Applied Physics Laboratory 615.453 Classical Mechanics
615.454 Quantum Mechanics
Admission Requirements 615.465 Modern Physics
Applicants must meet the general requirements for admis-
sion to a graduate program outlined in this catalog in the 615.471 Principles of Optics
Admission Requirements section. The applicant’s education 615.480 Materials Science
also must have included mathematics through vector analysis
and ordinary differential equations, general physics, modern
38
Applied Physics
II. Elective Courses three required courses listed below plus one additional course
Six one-term courses, with at least four from applied physics: from the required electrical and computer engineering pho-
tonics core.
A. Applied Physics Electives
Geophysics and Space Science Photonics Option—Applied Physics Required Courses
615.444 Space Systems I 615.441 Mathematical Methods for Physics and
Engineering
615.445 Space Systems II
615.462 Introduction to Astrophysics
615.748 Introduction to Relativity 615.471 Principles of Optics
Graduate Programs
615.753 Plasma Physics Photonics Option—Electrical and Computer
615.755 Space Physics Engineering Core Courses
615.761 Introduction to Oceanography
Select one:
615.769 Physics of Remote Sensing
525.413 Fourier Techniques in Optics
615.772 Cosmology
525.425 Laser Fundamentals
615.775 Physics of Climate
525.491 Fundamentals of Photonics
Photonics
Photonics Option—Electives in Applied Physics
615.751 Modern Optics
Applied Physics offers several additional optics courses. Of
615.758 Modern Topics in Applied Optics the remaining six courses, four or more must be photonics
615.778 Computer Optical Design courses selected from both the applied physics and electrical
615.780 Optical Detectors and Applications and computer engineering curricula.
615.781 Quantum Information Processing 615.751 Modern Optics
615.782 Optics and MATLAB 615.758 Modern Topics in Applied Optics
Materials and Condensed Matter 615.778 Computer Optical Design
615.446 Physics of Magnetism 615.780 Optical Detectors and Applications
615.447 Fundamentals of Sensors and Sensor Systems 615.781 Quantum Information Processing
615.481 Polymeric Materials 615.782 Optics and MATLAB
615.746 Nanoelectronics: Physics and Devices Note: 615.800 Applied Physics Project and 615.802 Directed
615.747 Sensors and Sensor Systems Studies in Applied Physics can also be used to allow the stu-
615.757 Solid State Physics dent to pursue specialized interests in optics.
615.760 Physics of Semiconductor Devices Photonics Options—Electives in Electrical and
Additional Computer Engineering
Electrical and Computer Engineering offers the following
615.448 Alternate Energy Technology
photonics courses:
615.762 Applied Computational Electromagnetics
615.765 Chaos and Its Applications
525.425 Laser Fundamentals
615.779 Computational Physics
525.436 Optics and Photonics Laboratory
615.800 Applied Physics Project
615.802 Directed Studies in Applied Physics
525.753 Laser Systems and Applications
B. General Electives
525.756 Optical Propagation, Sensing, and
The remaining elective one-term courses may be selected from
Backgrounds
those listed above and/or from other master of science pro-
grams described in this catalog, subject to approval by the 525.772 Fiber-Optic Communication Systems
student’s advisor. 525.792 Electro-Optical Systems
525.796 Introduction to High-Speed Electronics
Photonics Option and Optoelectronics
Students can elect to concentrate their studies in photonics by
525.797 Advanced Optics and Photonics Laboratory
completing a combination of courses from the applied physics
and electrical and computer engineering curricula. Applied Note: 525.801 and 525.802 Special Project courses can also be
physics students specializing in photonics must complete the used to allow students to pursue specialized interests in optics.
39
Applied Physics
Materials and Condensed Matter Option Electrical and Computer Engineering

Students can elect to concentrate their studies in materials and Electrical and Computer Engineering offers the following
condensed matter by completing a combination of courses materials-related courses:
from the applied physics, electrical and computer engineer- 525.406 Electronic Materials
ing, and materials science and engineering curricula. Applied 525.421 Introduction to Electronics and the
physics students specializing in materials and condensed mat- Solid State I
ter must complete three of the first six required courses listed
above, plus 615.480 Materials Science. Materials Science and Engineering
Of the remaining six courses, four or more must be mate- Materials Science and Engineering offers the following
rials and condensed matter courses selected from the applied materials-related courses:
Graduate Programs
physics, electrical and computer engineering, materials science 510.420 Topics in Biomaterials
and engineering, and chemical and biomolecular engineering
510.604 Mechanical Properties of Materials
curricula.
510.606 Chemical and Biological Properties of
Applied Physics Materials
Applied Physics offers the following materials-related courses: 510.622 Micro-and Nano-Structured Materials and
615.446 Physics of Magnetism Devices
615.447 Fundamentals of Sensors and Sensor Systems 515.417 Nanomaterials
615.481 Polymeric Materials
Chemical and Biomolecular Engineering
615.746 Nanoelectronics: Physics and Devices Chemical and Biomolecular Engineering offers the following
615.747 Sensors and Sensor Systems materials-related courses:
615.757 Solid State Physics 540.427 Introduction to Polymer Science
615.760 Physics of Semiconductor Devices 540.439 Polymer Nanocomposites
Note: 615.800 Applied Physics Project and 615.802 Directed
Studies in Applied Physics also can be used to allow students to
pursue specialized interests in materials and condensed matter.
Course Descriptions
Courses numbered 600-level and above are open only to those netic waves in plasmas, and electric and magnetic properties
students who have been admitted for graduate study. Some of materials.
courses may not be offered every year. Please refer to the Prerequisites: Knowledge of vector analysis, partial differential
Course Schedule published each term for exact dates, times, equations, Fourier analysis, and intermediate electromagnetics.
locations, fees, and instructors. Awadallah
615.441 Mathematical Methods for Physics and 615.444 Space Systems I
Engineering This course is intended for the physicist or engineer interested
This course covers a broad spectrum of mathematical tech- in the design of space experiments and space systems. The
niques essential to the solution of advanced problems in physics course presents the fundamental technical background, cur-
and engineering. Topics include ordinary and partial differen- rent state of the art, and example applications. Topics include
tial equations, contour integration, tabulated integrals, saddle- systems engineering, space environment, astrodynamics, pro-
point methods, linear vector spaces, boundary-value problems, pulsion and launch vehicles, attitude determination and con-
eigenvalue problems, Green’s functions, integral transforms, trol, and space power systems. (This course may be taken for
and special functions. Application of these topics to the solution 700-level credit with additional requirement of a research paper.)
of problems in physics and engineering is stressed. Prerequisite: An undergraduate degree in physics or engineer-
Prerequisites: Vector analysis and ordinary differential equa- ing or the equivalent.
tions (linear algebra and complex variables recommended). Staff
Adelmann
615.445 Space Systems II
615.442 Electromagnetics This course examines the fundamentals necessary to design
Maxwell’s equations are derived and applied to the study of and develop space experiments and space systems. The course
topics including electrostatics, magnetostatics, propagation presents the technical background, current state of the art,
of electromagnetic waves in vacuum and matter, antennas, and example applications. Topics include spacecraft thermal
wave guides and cavities, microwave networks, electromag- control, spacecraft configuration and structural design, space
40
Applied Physics
communications, command and telemetry systems, data and the potential for widespread use and economic effective-
processing and storage, reliability and quality assurance, and ness. Energy technologies to be considered include photo-
systems integration and testing. (This course may be taken for voltaics, solar thermal, wind energy, geothermal and thermal
700-level credit with the additional requirement of a research gradient sources, biomass and synthetic fuels, hydroelectric,
paper.) wave and tidal energy, and nuclear. The associated methods
Note: An undergraduate degree in physics or engineering or of energy storage will also be discussed.
the equivalent. Although preferable, it is not necessary to have Note: An undergraduate degree in engineering, physics, or a
taken 615.444 or 615.744 Space Systems I. related technical discipline.
Staff Charles
Graduate Programs
615.446 Physics of Magnetism 615.451 Statistical Mechanics and Thermodynamics
This is an introductory course on the magnetic properties of After a brief historical review of thermodynamics and statisti-
materials and magnetic systems. The emphasis of the course cal mechanics, the basic principles of statistical mechanics are
is a mastery of the physics of magnetism along with detailed presented. The classical and quantum mechanical partition
examples and applications. A basic review of magnetic fields functions are discussed and are subsequently used to carry
and various classical applications is given. Topics include the out derivations of the basic thermodynamic properties of sev-
physics of paramagnetism, diamagnetism, and ferromagnetism. eral different systems. Topics discussed include Planck’s black
The magnetism of metals is presented along with discussion of body radiation derivation and the Einstein-Debye theories of
Landau levels and the quantum Hall effect. Various applica- the specific heats of solids. The importance of these topics in
tions are presented in detail, including: magnetic resonance, the development and confirmation of quantum mechanics is
spectroscopic techniques, magnetoresistance, and spintronics. also examined. Other topics discussed include Fermi Dirac
Notes: An undergraduate degree in engineering, physics, and the Bose-Einstein statistics and the cosmic background
or a related technical discipline. Prior knowledge of electro radiation. The importance of comparisons between theory
magnetic interactions would be helpful but is not required. and data is stressed throughout.
Clancy Kundu
615.447 Fundamentals of Sensors and Sensor 615.453 Classical Mechanics

Systems This is an advanced course in classical mechanics that intro-
Students will receive an overview of sensors and methods duces techniques that are applicable to contemporary pure
to build networks and systems using sensors. The physics of and applied research. The material covered provides a basis
detectors including fundamental technologies and sampling for a fundamental understanding of not only quantum and
interfaces will be discussed. Sensor technologies for chemi- statistical mechanics but also nonlinear mechanical systems.
cal, biological, nuclear, and radiological detection will be Topics include the Lagrangian and Hamiltonian formulation
studied in detail. Evaluation methods will be presented for of classical mechanics, Euler’s rigid body equations of motion,
sensor selection based on application specific information Hamilton-Jacobi theory, and canonical perturbation theory.
including sensor performance, environmental conditions, and These methods are applied to force-free motion of a rigid
operational impact. DODAF 2.0 methods will be taught body, oscillations of systems of coupled particles, and central
and a project based on several viewpoints will be required force motion including the Kepler problem and scattering in
and presented. Additional studies will include methods for a Coulomb potential. Applications are emphasized through
combining results from various sensors to increase detection in-class examples and homework.
confidence. As part of the course, students will be given a Prerequisites: Intermediate mechanics and 615.441 Math-
threat scenario, and be required to select a sensor suite, and ematical Methods for Physics and Engineering.
networking information to design a hypothetical system con- Freund
sidering the threat, sensor deployment cost and logistics.
Prerequisites: An undergraduate degree in engineering, phys-
ics, or a related technical discipline. This is a course in advanced modern physics that presents
the basic concepts and mathematical formalism of quantum
Lesho
mechanics and introduces applications in atomic, molecular,
615.448 Alternate Energy Technology and solid state physics. Topics include the mathematics of
Energy availability and its cost are major concerns to every quantum mechanics, one-dimensional problems, central field
person. Fossil fuels in general and oil in particular are limited problems, the interaction of electromagnetic radiation with
and the world’s reserves are depleting. The question asked by atomic systems, the harmonic oscillator, angular momentum,
many is, Are there alternatives to the fossil fuel spiral (dwin- and perturbation theory.
dling supplies and rising costs)? This course addresses these Prerequisite: 615.441 Mathematical Methods for Physics and
alternative energy sources. It focuses on the technology basis Engineering or the equivalent.
of these alternate energy methods, as well as the practicality Najmi
41
Applied Physics
615.462 Introduction to Astrophysics 615.481 Polymeric Materials

The techniques and fundamental theories of modern astro- This is a comprehensive course in polymeric materials. Top-
physics are covered with special emphasis on the sun and stars. ics include natural (biological) polymers, polymer synthe-
Topics include stellar structure, opacity of gases, radiative and sis, polymer morphology, inorganic polymers, ionomers,
convective transfer of energy, spectroscopic technique, and and polymeric materials applications. Composite materials
interpretation of stellar spectra. Stellar and solar magnetism containing polymers will also be discussed. A portion of the
and the role of magnetic fields in stellar atmospheres are also course will be devoted to the evaluation of polymer properties
discussed. by physical methods.
Prerequisites: 615.442 Electromagnetics or the equivalent and Staff
615.454 Quantum Mechanics.
Graduate Programs
Najmi 615.492 Systems Engineering Science

This course is designed to reinforce the scientific and engi-
615.465 Modern Physics neering foundations of the engineering design, development,
This course covers a broad spectrum of topics related to the testing, and deployment of complex systems. The subject
development of quantum and relativity theories. The under- ranges from project planning through key analytic and physi-
standing of modern physics and its applications is essential to cal principles of reliability, economics, decision theory, and
the pursuit of advanced work in materials, optics, and other optimization. Important fundamental aspects of electrical,
applied sciences. Topics include the special theory of relativ- mechanical, and system packaging are presented along with
ity, particle-like properties of light, wavelike properties of their defining equations and approximations. Quality of both
particles, wave mechanics, atomic and nuclear phenomena, hardware and software is discussed along with the various
elementary particles, statistical physics, solid state, astrophys- aspects of technology transfer and the transition from proto-
ics, and general relativity. type development to fielded systems.
Prerequisite: Undergraduate degree in physics or engineering. Note: An undergraduate degree in physics or engineering
Hawkins or the equivalent with a basic understanding of engineering
mathematics. 615.441 Mathematical Methods for Physics
615.471 Principles of Optics and Engineering is recommended but not required.
This course teaches the student the fundamental principles of Fowler
geometrical optics, optical instruments, radiometry, vision,
and the measurement of color. It begins with a review of 615.744 Space Systems I
basic Gaussian optics to prepare the student for the more This course is intended for the physicist or engineer interested
advanced concepts. From Gaussian optics the course leads in the design of space experiments and space systems. The
the students through the principles of ray-trace analysis to course presents the fundamental technical background, cur-
develop a detailed understanding of the properties of an opti- rent state of the art, and example applications. Topics include
cal system. The causes and techniques for the correction of systems engineering, space environment, astrodynamics,
aberrations are studied. It covers the design principles of opti- propulsion and launch vehicles, attitude determination and
cal instruments, telescopes, microscopes, etc. The techniques control, and space power systems. This course requires the
of light measurement are covered in sessions on radiometry completion of a research paper. (This course may be taken for
and photometry. The elevation of optical sensors and their 400-level credit without the requirement of a research paper.)
performance limits are covered. The limitations imposed by
the human eye are discussed, and the description and mea- Prerequisite: An undergraduate degree in physics or engineer-
surement of color are reviewed. ing or the equivalent.
Prerequisite: Undergraduate degree in physics or engineering. Staff

Edwards 615.745 Space Systems II
615.480 Materials Science This course examines the fundamentals necessary to design
and develop space experiments and space systems. The course
This course covers a broad spectrum of materials-related top-
presents the theoretical background, current state of the art,
ics designed to prepare the student for advanced study in
and examples of the disciplines essential to developing space
the materials arena. Topics include atomic structure, atom
instrumentation and systems. Experts in the field will cover
and ionic behavior, defects, crystal mechanics, strength of
the following topics: spacecraft attitude determination and
materials, material properties, fracture mechanics and fatigue,
control, space communications, satellite command and telem-
phase diagrams and phase transformations, alloys, ceramics,
etry systems, satellite data processing and storage, and space
polymers and composites.
systems integration and testing. This course requires the com-
Prerequisite: Undergraduate degree in physics or engineering. pletion of a research paper. (This course is also offered for 400-
Charles level credit and does not require completion of a research paper.)
42
Applied Physics
Prerequisite: An undergraduate degree in physics or engineer- placed on the instrumentation and experimental techniques
ing or the equivalent. Although preferable, it is not necessary used in optical studies.
to have taken 615.444 or 615.744 Space Systems I. Prerequisite: 615.442 Electromagnetics or the equivalent com-
Staff pleted or taken concurrently.
Boone
615.746 Nanoelectronics: Physics and Devices
This course provides an introduction to state-of-the-art and 615.752 Statistical Optics
potential future electronics technologies. The first part of the This is an advanced course in which we explore the field
course focuses on the physics of advanced silicon technology of statistical optics. Topics covered include such subjects as
and on its scaling limits. The treatment includes a discus- the statistical properties of natural (thermal) and laser light,
Graduate Programs
sion of future electronics as projected to the year 2012 by spatial and temporal coherence, effects of partial coherence
the Semiconductor Industry Association’s National Technol- on optical imaging instruments, effects on imaging due to
ogy Roadmap for Semiconductors. This understanding of randomly inhomogeneous media, and a statistical treatment
conventional technology then motivates the second part of of the detection of light. Development of this more compre-
the course which covers some of the “new” physics current- hensive model of the behavior of light draws upon the use of
ly being explored for going “beyond the roadmap.” Topics tools traditionally available to the applied scientist, such as
range from the reasonably practical to the highly speculative linear system theory and the theory of stochastic processes.
and include tunneling transistors, single-flux quantum logic, Prerequisites: 524.414 Probability and Stochastic Processes or
single-electronics, spin-based electronics, quantum comput- equivalent.
ing, and perhaps even DNA-based computing. An overview is
Staff
also given of the prospects for advances in fabrication technol-
ogy that will largely determine the economic viability for any 615.753 Plasma Physics
of these possible electronic futures. This course serves as an introduction to plasma phenomena
Prerequisites: 625.454 Quantum Mechanics or equivalent; relevant to energy generation by controlled thermonuclear
615.760 Physics of Semiconductor Devices or equivalent. fusion and space physics. Topics include motion of charged
Staff particles in electric and magnetic fields, dynamics of fully ion-
ized plasma from both microscopic and macroscopic points of
615.747 Sensors and Sensor Systems view, magnetohydrodynamics, equilibria, waves, instabilities,
The primary objective of this course is to present recent applications to fusion devices, ionospheric, and space physics.
advances made in the field of sensors. A broad overview Prerequisite: 615.442 Electromagnetics or the equivalent.
includes radiation, biological, magnetic, fiber optic, and Ukhorskiy
acoustic sensors. The course will examine basic sensor oper-
ation and the implementation of sensors in measurement 615.755 Space Physics
systems. Other topics to be covered are physical principles This course studies the solar-terrestrial space environment
of sensing, interface electronic circuits, and sensor character- and its importance for utilization of space. Topics include the
istics. The focus will be on practical application and state-of- solar cycle and magnetic dynamo; the electrodynamics of the
the-art developments. solar upper atmosphere responsible for the solar wind; and
Fitch the solar wind interaction with unmagnetized and magnetized
bodies that leads to the treatment of ionospheres, planetary
615.748 Introduction to Relativity bow shocks, comets, and magnetospheres. Practical issues
After a brief review of the theory of special relativity, the math- include penetrating radiation and its effects on spacecraft and
ematical tools of tensor calculus that are necessary for under- man in space, catastrophic discharge phenomena, dust and
standing the theory of general relativity will be developed. hypervelocity impacts, material degradation by sputtering and
Relativistic perfect fluids and their stress-energy-momentum reactive ionospheric constituents, atmospheric heating and
tensor will be defined and Einstein’s field equations will be orbital drag effects on satellites, and magnetospheric storm
studied. Gravitational collapse will be introduced and the disruptions of ground power distribution.
Schwarzchild Black Hole solution will be discussed. Prerequisite: 615.442 Electromagnetics or the equivalent.
Najmi Anderson
615.751 Modern Optics 615.757 Solid State Physics

This course covers the fundamental principles of modern Students examine concepts and methods employed in con-
physical optics and contemporary optical systems. Topics densed matter physics with applications in materials science,
include propagation of light, polarization, coherence, inter- surface physics, and electronic devices. Topics include atomic
ference, diffraction, Fourier optics, absorption, scattering, and electronic structure of crystalline solids and their role in
dispersion, and image quality analysis. Special emphasis is determining the elastic, transport, and magnetic properties of
43
Applied Physics
metals, semiconductors, and insulators. The effects of structural will be the ocean processes that impact our climate such as El
and chemical disorder on these properties are also discussed. Nino and the Thermohaline Conveyor Belt.
Prerequisite: 615.454 Quantum Mechanics or the equivalent. Prerequisites: Mathematics through calculus.
Charles Porter
615.758 Modern Topics in Applied Optics 615.762 Applied Computational Electromagnetics

This course deals with optical system design involving state- This course introduces the numerical methods and computer
of-the-art concepts. In particular, we will analyze the impact tools required for the practical applications of the electromag-
of nonlinearity in the propagation of laser beams and also netic concepts covered in 615.442 to the daily life engineering
the stochastic nature of light propagation in some commonly problems. It covers the methods of calculating electromagnetic
Graduate Programs
encountered situations such as atmospheric and under-sea scattering from complex air and sea targets (aircraft, missiles,
light propagation. Nonlinear interactions of light and matter ships, etc.), taking into account the effects of the intervening
play a significant role in a large portion of modern optical atmosphere and natural surfaces such as the sea-surface and
systems. In most situations the optical system designer needs terrain. These methods have direct applications in the areas of
to eliminate or reduce nonlinearities and operate in a so-called radar imaging, communications, and remote sensing. Meth-
linear regime. In other situations, the optical system takes ods for modeling and calculating long-distance propagation
advantage of the nonlinear interaction to produce significantly over terrain and in urban areas, which find application in
new operating conditions that are a significant key to the per- the areas of radar imaging, radio and TV broadcasting, and
formance of modern optical systems. Similarly, taking into cellular communications, are also discussed. The numerical
account the stochastic nature of light emission, detection, and toolkit built in this course includes the method of moments,
propagation is important in the design and analyses of modern the finite difference frequency and time domain methods, the
optical systems. The course reviews random processes involved finite element method, marching numerical methods, itera-
in optical systems and applies statistical tools to identify the tive methods, and the shooting and bouncing ray method.
impact of such processes to the optical system performance. Prerequisites: Knowledge of vector analysis, partial differential
Prerequisites: 615.442 Electromagnetics and 615.782 Optics equations, Fourier analysis, basic electromagnetics, and a sci-
and MATLAB. Knowledge of laser fundamentals would also entific computer language.
be helpful. Awadallah
Torruellas
615.765 Chaos and Its Applications
615.760 Physics of Semiconductor Devices The course will introduce the students to the basic concepts
This course examines the physical principles underlying of nonlinear physics, dynamical system theory, and chaos.
semiconductor device operation and the application of these These concepts will be studied by examining the behavior of
principles to specific devices. Emphasis is placed on under- fundamental model systems which are modeled by ordinary
standing device operation, rather than on circuit properties. differential equations, and, sometimes, discrete maps. Exam-
Topics include elementary excitations in semiconductors such ples will be drawn from physics, chemistry, and engineering.
as phonons, photons, conduction electrons and holes; charge Some mathematical theory is necessary to develp the material.
and heat transport; carrier trapping and recombination; Practice through concrete examples will help to develop the
effects of high doping; contacts; the pn junction; the junction geometric intuition necessary for work on nonlinear systems.
transistor; surface effects; the MIS diode; and the MOSFET. Students conduct numerical experiments using provided soft-
Prerequisites: Mathematics including differential equations ware which allows for interactive learning. Access to Whiting
and linear operators. Familiarity with quantum mechanics School computers is provided for those without appropriate
would be helpful. personal computers.
Charles Prerequisite: Mathematics through ordinary differential equa-
tions. Familiarity with MATLAB is helpful. Consult instruc-
615.761 Introduction to Oceanography tor for more information.
This course covers the physical concepts and mathematics Liakos
of the exciting field of oceanography and can be taken as an
elective. It is designed for the student who wants to learn more 615.769 Physics of Remote Sensing
about oceanography. Topics range from fundamental small This course exposes the student to the physical principles
waves to planetary scale ocean currents. There will be a strong underlying satellite observations of the Earth by optical, infra-
emphasis on understanding the basic ocean processes. Initial red, and microwave sensors, and techniques for extracting geo-
development gives a description of how the ocean system physical information from remote sensor observations. Topics
works and the basic governing equations. Additional subjects will include spacecraft orbit considerations, fundamental con-
include boundary layers, flow around objects (seamounts), cepts of radiometry, electromagnetic wave interactions with
waves, tides, Ekman flow, and the Gulf Stream. Also studied land and ocean surfaces and the Earth’s atmosphere, radiative
44
Applied Physics
transfer and atmospheric effects, and overviews of some impor- 615.779 Computational Physics
tant satellite sensors and observations. Examples from selected Computer modeling and simulation are becoming increasingly
sensors will be used to illustrate the information extraction important in applied physics and engineering, with engineers
process, and applications of the data for environmental moni- and researchers typically using preexisting, highly sophisti-
toring, oceanography, meteorology, and climate studies. cated, graphically oriented software to solve their real-world
Gasparovic problems. To succeed in this environment one need not be able
to write such state-of-the-art software, but it is vital that one
615.772 Cosmology be a smart consumer. With this in mind, this course provides
This course begins with a brief review of tensor calculus and the student with a firm grounding in the fundamentals of
General Relativity principles, cosmological models, and theo- numerical applied physics/engineering. Through an interesting
Graduate Programs
retical and observational parameters that determine the fate of mix of principles, practical algorithms, and hands-on compu-
the universe. Basics of quantum fields necessary for an under- tational experience, the student learns the basic concepts that
standing of the Standard model and the early universe will be underlie the practical simulation software used in everything
presented. Hubble expansion, the Cosmic Microwave Back- from weather prediction to electronic device design. Both
ground Radiation (CMBR), and recent theories of the pres- ordinary and partial differential equations are discussed, and
ence of anisotropy in the CMBR, and their implications will the topics include convergence, stability, numerical error, ill-
be studied. The horizon problem and the role of the inflation- conditioning, gridding, finite-differences, iterative techniques,
ary scenario in the early universe will be thoroughly explored. and stochastic methods. The text for the course was written
by the instructor and is printed and sold by the bookstore at
Prerequisite: 615.748 Introduction to Relativity.
cost. This text also exists in an experimental interactive form
Najmi (Mathcad), which is not required for the course but which will
be provided for free to interested students.
615.775 Physics of Climate
Prerequisites: Familiarity with differential equations is
To understand the forces that cause global climate variability required, and prior exposure to computer programming is
we must understand the natural forces that drive our weath- recommended.
er and our oceans. This course covers the fundamental sci-
Staff
ence underlying the nature of the Earth’s atmosphere and
its ocean. This includes development of the basic equations
615.780 Optical Detectors and Applications
for the atmosphere and ocean, the global radiation balance,
description of oceanic and atmospheric processes and their This course examines the physics of detection of incoherent
interactions and variability. Also included will be a descrip- electromagnetic radiation from the infrared to the soft x-ray
tion of observational systems used for climate studies and regions. Brief descriptions of the fundamental mechanisms of
monitoring, and fundamentals underlying global circulation device operation are given. Typical source characteristics are
and climate prediction models. mentioned to clarify detection requirements. Descriptions of
non-spatially resolving detectors based on photoemission and
Prerequisites: Undergraduate degree in physics or engineer- photo-excitation follow, including background physics, noise,
ing or equivalent with strong background in mathematics and sensitivity. Practical devices and practical operational con-
through the calculus level. straints are described. Description of scanning formats leads
Porter, Winstead into the description of spatially revolving systems (e.g., star-
ing arrays). Main emphasis is on charge-coupled devices and
615.778 Computer Optical Design photo-emissive multiplier tubes such as the image intensifier.
In this course students learn to use optical ray-trace analysis Selection of optimum detectors and integration into complete
to design and analyze optical systems. Students use a full- system designs are discussed. Applications in space-based and
function optical ray-trace program on personal computers to terrestrial remote sensing are discussed.
analyze designs—beginning with simple lenses for familiariza- Note: 615.471 Principles of Optics desired; undergraduate-
tion with the software, to more complicated wide-angle and level studies in solid-state physics and mathematics—prefer-
zoom lenses, and finally to three-dimensional systems such ably statistics—necessary.
as spectrographs. Emphasis is placed on understanding the
Darlington
optical concepts involved in the designs while developing the
ability to use the software. Upon completion of the course 615.781 Quantum Information Processing
students are capable of independently pursuing their own
This course provides an introduction to the rapidly develop-
optical designs. Assignments require the use of a Pentium PC
ing field of quantum information processing. In addition to
running Windows with 16Mb of RAM, and 12Mb of free
studying fundamental concepts such as two-state systems,
hard disk space.
measurements uncertainty, quantum entanglement, and non-
Prerequisite: 615.471 Principles of Optics. locality, emphasis will be placed on specific quantum informa-
Edwards, Ohl tion protocols. Several applications of this technology will be
45
Applied Physics
explored, including: cryptography, teleportation, dense cod- 615.800 Applied Physics Project
ing, computing, and error correction. The quantum mechan- This course is an individually tailored, supervised project that
ics of polarized light will be used to provide a physical context offers the student research experience through work on a spe-
to the discussion and will be supplemented with computer cial problem related to his or her field of interest. The research
exercises. Current research on implementations of these ideas problem can be addressed experimentally or analytically, and
will also be discussed. a written report is produced.
Prerequisites: 615.454 Quantum Mechanics; familiarity with Prerequisites: It is recommended that all required applied phys-
Mathematica helpful. ics courses be completed. The applied physics project proposal
Jacobs form (available from the student’s advisor) must be approved
prior to registration.
Graduate Programs
615.782 Optics and MATLAB Note: Only open to candidates in the Master of Science in
This course provides hands-on experience with MATLAB by Applied Physics program.
performing weekly computer “labs” revolving around optics. Charles
Each lab will explore a new topic in the optics field, while
simultaneously providing experience in MATLAB. The goal 615.802 Directed Studies in Applied Physics
is to bridge the gap between theoretical concepts and real- In this course qualified students are permitted to investigate
world applications or models. Topics include an introduction possible research fields or to pursue problems of interest
to MATLAB, Fourier theory and E&M propagation, image through reading or non-laboratory study under the direction
segmentation and pattern recognition, statistical optics, geo- of faculty members.
metrical optics, interference and wave optics, holography and Prerequisite: The directed studies program proposal form
computer generated holography, polarization, speckle phe- (available from the student’s advisor) must be completed and
nomenon, and laser theory. Students are expected to complete approved prior to registration.
weekly exercises in MATLAB and a semester project which
Note: Open only to candidates in the Master of Science in
will allow the student to investigate a particular topic of inter-
Applied Physics program.
est not specifically covered in the course.
Charles
Prerequisites: No prior experience with MATLAB is required.
While a background in optics is helpful, it is not required.
Torruellas
46
Bioinformatics
Bioinformatics Advanced Biotechnology Studies,

Advanced Academic Programs,
Zanvyl Krieger School of Arts and Sciences
Joint offering of the Zanvyl Krieger School of Arts and Sciences
and the Whiting School of Engineering Patrick Cummings, Director Biotechnology
Director, Center for Biotechnology,
Bioinformatics is proving to be a necessary tool for biologists, Advanced Biotechnology Studies,
medical researchers, and drug designers in understanding Advanced Academic Programs,
genes, gene expression, SNPs, proteins, pathways, and in Zanvyl Krieger School of Arts and Sciences
studying disease. It is also playing an increasingly important
role in identifying, characterizing, and selecting potential Eleanor Boyle Chlan
Graduate Programs
lead compounds and in understanding target molecules for Computer Science Program,
drug development and production. As the biotechnology Whiting School of Engineering,
industry expands, a growing number of discoveries will move Engineering for Professionals
out of research laboratories and into commercial production.
The explosion of sequence data from the human genome Admission Requirements
project and other large scale and small scale sequencing proj- Students entering this program must have completed a four-
ects calls for skilled professionals who can develop and use year bachelor’s degree in biological sciences or engineering,
sophisticated computer applications to unlock the informa- or a graduate degree in an appropriate field, with the follow-
tion within the genetic code, with the ultimate goal of deliv- ing prerequisites required for admission to the program: two
ering life saving therapies. semesters of undergraduate Organic Chemistry or 410.302
To meet the demand for skilled bioinformatics profes- Bio-Organic Chemistry; 410.601 Advanced Biochemistry;
sionals, Whiting School of Engineering’s Engineering for 605.201 Introduction to Programming Using Java, C++, or
Professionals and the Zanvyl Krieger School of Arts and Sci- C; 605.202 Data Structures; an undergraduate or graduate
ences’ Advanced Academic Programs have joined forces to course in Probability and Statistics or 410.645 Biostatistics;
offer a degree in the new and rapidly evolving discipline that and Calculus. All the prerequisites can be taken in the exist-
combines computer science and molecular biology. The bio- ing Master of Science in Computer Science or in the Master
informatics degree draws on the faculty and resources from of Science in Biotechnology program. Applicants must have
within each school to provide professionals with in-depth a GPA of 3.0 or higher on a 4.0 scale in the latter half of their
knowledge and technical skills in computational biology, undergraduate or graduate studies. Applicants with less than
preparing students for careers in bioinformatics and compu- the required GPA or who have not completed all the prereq-
tational biology. uisites may be admitted as provisional students. Applicants
Graduates with the MS in Bioinformatics will have the with a degree from a country other than the US must provide
educational foundation necessary to interpret complex bio- credential evaluations and a TOEFL, with a minimum score
logical information, perform analysis of sequence data using of 100 on the Internet-based test.
sophisticated bioinformatics software, and program software This program is offered jointly by the Zanvyl Krieger
when needed. The degree covers not only the theoretical School of Arts and Sciences (KSAS) and the Whiting School
aspects of the field, but also the practical side of bioinformat- of Engineering. However, the administration is handled by
ics, through contact with Hopkins faculty actively developing KSAS and applications for admission to the Master of Science
these technologies. in Bioinformatics must be submitted directly to KSAS (www
.bioinformatics.jhu.edu). In addition to official transcripts,
Program Committee applicants must supply a resume or curriculum vitae, and a
The program committee oversees the admissions, policy, and 500-word statement of purpose. The admissions committee
operations of the joint MS in Bioinformatics. It consists of: reserves the right to request additional information from
Richard McCarty, Co-Chair applicants such as GRE scores or letters of recommendation,
William D. Gill Professor of Biology Emeritus, Dean if needed, to assess their candidacy for admission.
Emeritus, and Chair, Center for Biotechnology Education,
Zanvyl Krieger School of Arts and Sciences Program Structure
The joint M.S. degree will require certain prerequisites and a
Thomas A. Longstaff, Co-Chair total of 11 courses. Students may elect to complete additional
Computer Science Program, work and earn an M.S. in Bioinformatics with thesis. The
Whiting School of Engineering, course offerings are listed below.
Kristina Obom Prerequisites:
Director, Biotechnology and Bioinformatics, • Two semesters of Organic Chemistry
Center for Biotechnology Education (or 410.302 Bio-Organic Chemistry)
47
Bioinformatics
• One semester of Advanced Biochemistry Electives—Choose Two

(or 410.601 Advanced Biochemistry) Choose one elective from the approved list of computer sci-
• Introduction to Programming Using Java, C++ or C ence courses and one from the approved list of biotechnology
(or 605.201 Introduction to Programming Using Java) courses.
• Data Structures (or 605.202 Data Structures)
Approved Computer Science Elective List
• One course in Probability and Statistics or
605.401 Foundations of Software Engineering
(410.645 Biostatistics)
605.444 XML Design Paradigms
• Calculus
605.462 Data Visualization
Core Courses—Five Required 605.481 Principles of Enterprise Web Development
Graduate Programs
605.421 Foundations of Algorithms 605.484 Agile Development with Ruby on Rails

410.602 Molecular Biology 605.486 Mobile Application Development for the
Android Platform
410.610 Gene Organization and Expression
605.701 Software Systems Engineering
Select Either: 605.741 Distributed Database Systems: Cloud
605.441 Principles of Database Systems or Computing and Data Warehouses
410.634 Practical Computer Concepts for 605.746 Machine Learning
Bioinformatics 605.747 Evolutionary Computation
605.759 Independent Project in Bioinformatics
Select Either: 605.782 Web Application Development with Java
605.452 Biological Databases and Database Tools or 605.787 Rich Internet Applications with Ajax
410.633 Introduction to Bioinformatics
Approved Biotechnology Elective List
Concentration Courses—Choose Four 410.603 Advanced Cell Biology I
605.443 The Semantic Web 410.604 Advanced Cell Biology II
605.451 Principles of Computational Biology 410.612 Human Molecular Genetics
605.452 Biological Databases and Database Tools 410.613 Principles of Immunology
605.453 Computational Genomics 410.615 Microbiology
605.456 Computational Drug Discovery and 410.616 Virology
Development 410.622 Molecular Basis of Pharmacology
605.716 Modeling and Simulation of Complex 410.629 Genes and Disease
Systems 410.630 Gene Therapy
605.751 Computational Aspects of Molecular 410.632 Emerging Infectious Diseases
Structure 410.638 Cancer Biology
605.754 Analysis of Gene Expression and High- 410.641 Clinical and Molecular Diagnostics
Content Biological Data 410.648 Clinical Trial Design & Statistical Analysis
605.755 Systems Biology 410.656 Recombinant DNA Laboratory
410.635 Bioinformatics: Tools for Genome Analysis 410.752 High Throughput Screening and
Automation Laboratory
410.639 Protein Bioinformatics
410.800 Independent Research in Biotechnology
410.640 Phylogenetics and Comparative Genomics
410.661 Methods in Proteomics M.S. in Bioinformatics with Thesis Option
410.666 Next Generation DNA Sequencing and Students interested in pursuing the M.S. in Bioinformatics
Analysis with the thesis are required to take twelve courses and should
410.671 Microarrays and Analysis consult with the program advisor. The thesis is a two semester
410.698 Bioperl research project. Students should take the following courses
410.712 Advanced Practical Computer Concepts in consecutive semesters:
for Bioinformatics 410.800 Independent Research in Biotechnology
410.713 Advanced Genomics and Genetics Analyses 410.801 Biotechnology Thesis
410.754 Comparative Microbial Genomics:
Bioinformatics—Online
From Sequence to Significance
Students may complete the Master of Science in Bioinformat-
Notes: Students may take both 410.639 and 605.751. Stu- ics online, and all students may take advantage of online offer-
dents may take either 410.671 or 605.754, but not both. ings. While not all courses are available online, a complete
48
Bioinformatics
program is offered and additional online courses are continu- Johns Hopkins Medical School or Bloomberg School of Pub-
ally being developed. This increases the flexibility of course lic Health, related to bioinformatics, that are also relevant.
offerings for students wishing to pursue studies in either the Upon special request, students may take one or two of these
face-to-face or online format, or a combination of both. courses as part of their program in consultation with their
Course content is identical to that in the face-to-face advisor, provided that the students meet the prerequisites,
offerings but available in a paced, asynchronous mode over obtain instructor permission and the advisor approves the
the Internet. Recorded lectures with associated multi-media course as a suitable substitution for one of the requirements
content, are augmented with online discussions and weekly above. The course descriptions and offerings are provided on
synchronous office hours. Prospective and current students the websites of the respective schools.
should consult the KSAS website for the current online
Tuition
Graduate Programs
course offerings, course schedules, and procedures for online
programs. Tuition for the courses in the joint degree varies by course
and school of origin and is posted in the course schedule
Courses from Other JHU Schools each semester.
There are various courses at Homewood (Electrical Engineer-
ing and Biomedical Engineering departments) and at the
Course Descriptions
410.302 Bio-Organic Chemistry 410.603 Advanced Cell Biology I
This course provides a foundation in structural organic This course covers cell organization and subcellular structure.
chemistry, acid base chemistry, chemical thermodynamics, Students examine the evolution of the cell, chromosome and
and reaction mechanisms. Subjects include Lewis structures, plasma membrane structures and behaviors, mechanics of cell
atomic and hybridized orbitals, stereochemistry, inter- and division, sites of macromolecular synthesis and processing,
intramolecular forces of attraction, neucleophilic reaction transport across cell membranes, cell dynamics, organelle
mechanisms, functional groups, and the organic chemistry biogenesis, and cell specialization. Students also are intro-
of biological molecules. (Not for graduate credit) duced to the experimental techniques used in cell biology to
Prerequisites: Two semesters of college chemistry. study cell growth, manipulation, and evaluation.
Staff Staff
410.601 Advanced Biochemistry
410.604 Advanced Cell Biology II
This course explores the roles of essential biological mol-
This course is a continuation of 410.603 Advanced Cell
ecules including proteins, lipids, and carbohydrates, with
Biology I and further explores cell organization and subcel-
an introduction to nucleic acids. It provides a systematic
lular structure. Students examine cell-to-cell signaling that
and methodical application of general and organic chemistry
involves hormones and receptors, signal transduction path-
principles. Students examine the structure of proteins, their
ways, second messenger molecules, cell adhesion, extracellu-
function, the methodologies for the purification and charac-
lar matrix, cell cycle, programmed cell death, methylation of
terization of proteins, and the alteration of protein function
DNA and modification of chromatic structure, and mecha-
through protein engineering. Enzymes and their kinetics and
nisms of the cell. The involvement of abnormalities in signal
mechanisms are covered in detail. This course provides the
transduction pathways to oncogenesis and other disease states
linkage between the inanimate world of chemistry and the
will be stressed. Where appropriate, current drugs and devel-
living world of biology.
oping techniques will be examined in the context of relevant
Staff pathological states.
410.602 Molecular Biology Staff
This course provides a comprehensive overview of the key
concepts in molecular biology. Topics include nucleic acid 410.610 Gene Organization and Expression
structure and function, DNA replication, transcription, Students use genetic analysis and molecular biology tech-
translation, chromosome structure and remodeling and niques to investigate chromosome organization, chromatin
regulation of gene expression in prokaryotes and eukaryotes. structure, function genomics, and mechanisms of differential
Extended topics include methods in recombinant DNA tech- gene expression. Other topics include DNA methylation,
nology, microarrays, and microRNA. silencers, enhancers, genomic imprinting, and microarray
Prerequisite: 410.601 Advanced Biochemistry. analyses.
Ma Staff
49
Bioinformatics
410.612 Human Molecular Genetics 410.622 Molecular Basis of Pharmacology

In this course students learn to use the tools of modern This course begins by reviewing receptor binding and enzyme
genomics to elucidate phenotypic variation within popula- kinetics. Various cellular receptors and their physiology are
tions. The course uses human disease (from simple Mende- discussed as well as the pharmacological agents used to define
lian disorders to common complex disorders) to exemplify and affect the receptor’s function. Students study the phar-
the types of studies and tools which can be used to charac- macology of cell surface receptors and intracellular receptors.
terize cellular pathophysiology as well as to provide genetic Also considered are the drugs that affect enzymes.
diagnostics and therapies. Students become facile with link- Staff
age analysis, cancer genetics, microarray analysis (oligo and
410.629 Genes and Disease
cDNA arrays), gene therapy, SNP studies, imprinting, dis-
Because of recent advances, powerful diagnostic tests now
Graduate Programs
equilibrium mapping and ethical dilemmas associated with

the Human Genome Project. detect genetic diseases, and there is promise of gene replace-
ment therapy. In this course students cover general genetic
Staf
principles, DNA tools for genetic analysis, cytogenetics, gene
mapping, the molecular basis of genetic diseases, animal
410.613 Principles of Immunology
models, immunogenetics, genetics of development, genet-
This course covers molecular and cellular immunology, ics of cancer, and treatment of genetic diseases. Molecular
including antigen and antibody structure and function, methods of analysis are emphasized.
effector mechanisms, complement, major histocompatibility
Staff
complexes, B- and T-cell receptors, antibody formation and
immunity, cytotoxic responses, and regulation of the immune 410.630 Gene Therapy
response. Students are also introduced to the applied aspects Students are introduced to gene transfer, its technical evolu-
of immunology which include immunoassay design, various tion, and its testing through clinical studies. Gene therapy
formats and detection methods, and flow cytometry. Special holds promise for both genetic diseases and acquired diseases
topics include organ transplantation, immunosuppression, such as cancer and AIDS. The health, safety, and ethical
immunotherapy, autoimmunity, and DNA vaccination. issues surrounding gene therapy are discussed, together with
Staff the review and oversight systems established to regulate this
therapy. Students also consider how industry is developing
410.615 Microbiology these techniques, both in new start-up companies as well as
This course is an overview of microorganisms important in in established biotechnology and pharmaceutical companies.
clinical diseases and biotechnology. Students are introduced An overview of proprietary and patent issues in gene therapy
to the general concepts concerning the morphology, genetics, is part of the course.
and reproduction of these microbial agents. Lectures focus on Staff
individual organisms with emphasis on infectious diseases,
biotechnology applications, molecular and biochemical char- 410.632 Emerging Infectious Diseases
acteristics, and molecular and serological identification meth- This course focuses on emerging infectious diseases from
ods. Students will also discuss the impact biotechnology, and many different perspectives. The maladies addressed range
particularly genomics, will have on the development of anti- from diseases that have reappeared in altered genetic forms
biotics and vaccines as treatment and preventive measures. such as the influenza virus and the West Nile virus to the
lethal hemorrhagic fever caused by the Ebola virus. Also
Staff
discussed is the threat of recombinant and ancient infectious
agents such as Bacillus anthracis, causative agent of anthrax,
410.616 Virology
which can be used in biological warfare weapons. Opinions
This course covers the advanced study of viruses with regard from noted scientists and leaders concerning emerging dis-
to the basic biochemical, molecular, epidemiological, clini- eases and the prospects for battling them successfully provide
cal, and biotechnological aspects of animal viruses primar- scientific and social perspective.
ily and bacteriophage, plant viruses, viroids, prions, and
Staff
unconventional agents secondarily. Specific areas of virology
including viral structure and assembly, viral replication, viral 410.633 Introduction to Bioinformatics
recombination and evolution, virus-host interactions, viral Retrieval and analysis of electronic information are essential in
transformation, gene therapy, antiviral drugs, and vaccines today’s research environment. This course explores the theory
are presented. The major animal virus families are discussed and practice of biological database searching and analysis.
individually with respect to classification, genomic structure, In particular, students are introduced to integrated systems
virion structure, virus cycle, pathogenesis, clinical features, where a variety of data sources are connected through World
epidemiology, immunity, and control. The viral vectors and Wide Web access. Information retrieval as well as interpreta-
their applications in biotechnology are discussed. tions discussed, and many practical examples in a computer
Staff laboratory setting enable students to improve their data min-
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Bioinformatics
ing skills. Methods included in the course are searching the ondary structure prediction and statistical verification. Also
biomedical literature, sequence homology searching and mul- covered are graphic visualization of the different types of
tiple alignment, protein sequence motif analysis, and several three-dimensional (3-D) folds and predicting 3-D structures
genome analytical methods. Classes are held in a computer by homology. Computer laboratories complement material
laboratory. Acquaintance with computers is required. presented in lectures.
Staff Staff
410.634 Practical Computer Concepts for 410.640 Phylogenetics and Comparative Genomics
Bioinformatics This course will provide a practical, hands-on introduction to
This course introduces students with a background in the life the study of phylogenetics and comparative genomics. Theo-
sciences to the basic computing concepts of the UNIX oper-
Graduate Programs
retical background on molecular evolution will be provided
ating system, relational databases, structured programming, only as needed to inform the comparative analysis of genomic
object-oriented programming, and the Internet. Included data. The emphasis of the course will be placed squarely on
is an introduction to SQL and the Perl scripting language. the understanding and use of a variety of computational tools
The course emphasizes relevance to molecular biology and designed to extract meaningful biological information from
bioinformatics. It is intended for students with no computer molecular sequences. Lectures will provide further informa-
programming background, but with a solid knowledge of tion on the conceptual essence of the algorithms that under-
molecular biology. lie various sequence analysis tools and the rationale behind
Staff their use. Only programs that are freely available, as either
downloadable executables or as web servers, will be used in
410.635 Bioinformatics: Tools for Genome Analysis
this course. Students will be encouraged to use the programs
Several large-scale DNA sequencing efforts have resulted in and approaches introduced in the course to address questions
mega-base amounts of DNA sequences being deposited in relevant to their own work.
public databases. As such, the sequences are of less use than
those sequences that are fully annotated. To assign annota- Staff
tions such as exon boundaries, repeat regions, and other bio- 410.641 Clinical and Molecular Diagnostics
logically relevant information accurately in the feature tables This course covers basic concepts and practical applications
of these sequences requires a significant amount of human of modern laboratory diagnostic techniques. Topics include
intervention. This course instructs students on computer the principles of testing methodology, quality assurance and
analytical methods for gene identification, promoter analy- the application of molecular methods to the clinical and
sis, and introductory gene expression analysis using software research laboratory. The test methods to be covered include
methods. Additionally, students are introduced to compara- nucleic acid based methods such as hybridization, amplifi-
tive genomics and proteomic analysis methods. Students cation and sequencing; non-nucleic acid methods such as
will become proficient in annotating large genomic DNA HPLC, GLC and protein analysis; and technologies such as
sequences. Students complete two large sequence analysis PFGE, ribotyping, RFLP, and microarrays. In addition to the
projects during the course. test procedures, students are exposed to aspects of statistics,
Staff quality control, regulatory issues and applications of these
410.638 Cancer Biology methods to the diagnosis and prognosis of human disease.
This course provides students with knowledge of the fun- Prerequisites: 410.601 Biochemistry; 410.602 Molecular
damental principles of the molecular and cellular biology Biology.
of cancer cells. Lectures and demonstrations explain the Staff
role of growth factors, oncogenes, tumor suppressor genes,
angiogenesis, and signal transduction mechanisms in tumor 410.645 Biostatistics
formation. Discussion of aspects of cancer epidemiology, This course introduces statistical concepts and analytical
prevention, and principles of drug action in cancer manage- methods as applied to data encountered in biotechnology
ment is part of the course. and biomedical sciences. It emphasizes the basic concepts
Staff of experimental design, quantitative analysis of data, and
statistical inferences. Topics include probability theory and
410.639 Protein Bioinformatics distributions; population parameters and their sample esti-
Because the gap between the number of protein sequences mates; descriptive statistics for central tendency and disper-
and the number of protein crystal structures continues to sion; hypothesis testing and confidence intervals for means,
expand, protein structural predictions are increasingly more variances, and proportions; the chi-square statistic; categori-
important. This course provides a working knowledge of cal data analysis; linear correlation and regression model;
various computer-based tools available for predicting the analysis of variance; and nonparametric methods. The course
structure and function of proteins. Topics include protein provides students a foundation to evaluate information criti-
database searching, protein physicochemical properties, sec- cally to support research objectives and product claims and
51
Bioinformatics
a better understanding of statistical design of experimental the “$1,000 Human Genome” is in sight. Armed with com-
trials for biological products/devices. plete genome sequences, biologists need to identify the genes
Prerequisites: Basic mathematics (algebra); scientific calculator. encoded within and the variation in these genes between
Staff individuals, assign functions to the genes, and to put these
into functional and metabolic pathways. This course will pro-
410.648 Clinical Trial Design & Statistical Analysis vide an overview of next generation sequencing technologies
Through a case study approach, this course will cover the in the historical context of DNA sequencing, the pros and
basic design issues of clinical trials. The design of specific tri- cons of each technology, and the bioinformatics techniques
als will be studied to illustrate the major issues in the design used with this sequence information, beginning with quality
of these studies, such as end point definition, control group control assessment, genome assembly and annotation.
selection, and eligibility criteria. The course also covers the
Graduate Programs
Prerequisites: 410.602 Molecular Biology, 410.633 Introduc-

analysis of these studies, including approaches that are central tion to Bioinformatics, and 410.634 Practical Computer
to clinical trials, such as stratified analysis, adjustment factors, Concepts for Bioinformatics.
and “intention-to-treat” analyses. The analytical techniques
to be covered will include the analysis of correlated data Staff
(i.e., clustered data, longitudinal data), survival analysis using 410.671 Microarrays and Analysis
the proportional hazards (Cox) regression model, and linear This course will focus on the analysis and visualization of
models. The course will also cover various aspects of statisti- microarray data. The general aim is to introduce students
cal computing, including organizing data, data management, to the various techniques and issues involved with analyzing
and performing analyses using computer software. The ethi- gene expression data and visualize the results using modern
cal reporting of clinical trial results will also be covered with statistical scripting software. Topics include detecting and
reference to the medical research literature. attributing sources of data variability, assessing sample size and
Prerequsites: 410.651 Clinical Development of Drugs and power, identifying differentially expressed genes with relevant
Biologics; 410-645 Biostatistics (or equivalent). statistical tests, and controlling for false positive discovery. An
Staff introduction to linear and nonlinear dimensionality reduc-
tion methods, pattern recognition (clustering), and supervised
410.656 Recombinant DNA Laboratory
classification techniques will be covered. Assignments and
This laboratory course introduces students to methods for
concepts will make use of real experimental data sets from
manipulating and analyzing nucleic acids. Students gain
platforms such as Affymetrix, Agilent, Illumina, and custom
extensive hands-on experience with plasmid purification,
cDNA. Analysis will be conducted in R using Bioconductor
restriction mapping, ligations, bacterial transformations, gel
packages, with applications focused on target identification,
electrophoresis, as well as applications of the polymerase
biomarker discovery, pathogen detection, and many others.
chain reaction. This course is not recommended for students
with substantial experience in these methodologies. Staff
Prerequisites: 410.601 Advanced Biochemistry and 410.602 410.698 Bioperl
Molecular Biology. This course builds on the Perl concepts taught in 410.634
410.661 Methods in Proteomics Practical Computer Concepts for Bioinformatics. Perl has
This course covers the analytical methods used to separate emerged as the language of choice for the manipulation of
and characterize pharmaceutical compounds (predominantly bioinformatics data. Bioperl, a set of object-oriented modules
proteins) derived through biotechnology. While emphasis that implements common bioinformatics tasks, has been
is placed on the general principles and applicability of the developed to aid biologists in sequence analysis. The course
methods, current protocols are discussed, and problem sets will include an overview of the principal features of Biop-
representing realistic developmental challenges are assigned. erl and give students extensive opportunity to use Perl and
Topics include chromatography (HPLC, SEC, IEC), elec- the tools of Bioperl to solve problems in molecular biology
trophoretic techniques (2-D gelelectrophoresis), spectro- sequence analysis.
scopic methods (UV/Vis, Fluorescence, CD), analytical Staff
ultra-centrifugation, micro-arrays, mass spectroscopy, amino
acid analysis, sequencing, and methods to measure protein- 410.712 Advanced Practical Computer Concepts
protein interactions. for Bioinformatics
Staff This intermediate to advanced-level course, intended as a
follow-on to 410.634 Practical Computer Concepts for Bio-
410.666 Next Generation DNA Sequencing and informatics (a prerequisite for this new class), will integrate
Analysis and expand on the concepts from that introductory class to
The recent revolution in DNA sequencing technologies has allow students to create working, Web-based bioinformatics
transformed biology within a few short years, dropping the applications in a project-based course format. After a review
cost and ease of sequencing dramatically to the point where of the concepts covered in 410.634, students will learn how to
52
Bioinformatics
create functional Web applications on a UNIX system, using vast sea of information in order to understand the diversity of
Perl and CGI to create forms that can be acted upon, and microbial life on earth: transforming DNA data into knowl-
using the Perl DBI module to interface with MySQL relation- edge about the metabolism, biological niche and lifestyle of
al databases that they will create and populate to retrieve and these organisms. The use and development of bioinformatic
present information. This will be demonstrated by building an platforms for the sensible comparison of genetic function
in-class, instructor led project. More advanced SQL concepts and context are essential for work in modern microbiol-
and database modeling will also be covered, as well as a brief ogy. Topics covered will include methods for sequencing,
introduction to the PHP scripting language. Class time in the gene finding, functional prediction, metabolic pathway and
latter weeks of the class will be devoted to individual assistance biological system reconstruction, phylogenomics, ontolo-
on student projects as well as to short lectures on advanced gies, and high-throughput functional genomics. Particular
Graduate Programs
Perl topics, object-oriented Perl, and installing Perl modules. attention will be paid to publicly available bioinformatics
The last two weeks will be devoted to student presentations resources and their proper use. Examples will be drawn from
and a peer critique of their project. Once again, whenever pos- microbes of importance to human health, industry, ecology,
sible, this course will emphasize relevance to solving problems agriculture and biodefense. Lectures and discussions are inte-
in molecular biology and bioinformatics. grated with computer exercises where appropriate.
Prerequisites: 410.601 Advanced Biochemistry, 410.602 Prerequisites: 410.601 Advanced Biochemistry 410.602
Molecular Biology, 410.634 Practical Computer Concepts Molecular Biology; 410.633 Introduction to Bioinformatics.
for Bioinformatics with a grade of A- or above or permission Staff
of associate program chair.
410.800 Independent Research in Biotechnology
410.713 Advanced Genomics and Genetics Analyses
Students in the biotechnology program have the opportunity
The next generation of array and sequencing technologies
to enroll in an independent research course. This elective
provides the ability to investigate large quantities of genom-
course is an option after a student has completed at least eight
ics information with higher sensitivity, greater throughput,
graduate-level courses and has compiled a strong academic
and lower costs. This also introduces new challenges in data
record. Prior to proposing a project, interested students must
management, novel algorithmic approaches, and general
have identified a research topic and a mentor who is familiar
interpretation. This course builds on the topics in 410.671
with their prospective inquiry and who is willing to provide
Microarrays and Analysis to address analysis of both genetic
guidance and oversee the project. The research project must
variation and genomics content using technologies measur-
be independent of current work-related responsibilities as
ing splice variants, single nucleotide polymorphisms (SNPs),
determined by the project mentor. The mentor may be a
copy number variation (CNV), and transcription factor
faculty member teaching in the biotechnology program, a
binding sites. Analysis methods for deep sequencing tech-
supervisor from the student’s place of work, or any expert
nologies are also introduced including: quantitative mRNA
with appropriate credentials. Students are required to submit a
content (RNA-Seq) and whole genome assembly methods
formal proposal for review and approval by the biotechnology
with de novo and reference-based approaches.
program committee. The proposal must be received by the
Prerequisites: Bioinformatics core courses and 410.671 Micro- Advanced Academic Programs office no later than one month
arrays and Analysis. prior to the beginning of the term in which the student wants
410.752 High Throughput Screening and to enroll in the course. Students must meet with a member of
Automation Laboratory the program committee periodically for discussion of the proj-
This course will utilize hands-on instruction in automated ect’s progress, and a written document must be completed and
bioassay systems for high throughput screening (HTS) as an approved by the program committee and project mentor for
entry point to covering pertinent aspects of HTS, such as data the student to receive graduate credit. Additional guidelines
manipulation, storage, and analysis; liquid handling robotics; can be obtained from the AAP administrative office.
microtiter plate washing, manipulation and bar coding; HTS Prerequisites: All four core courses and four elective courses.
assay detectors; and automated devices for assay setup, valida-
tion, and visualization. Cost considerations, HTS amenable 410.801 Biotechnology Thesis
assay systems, and miniaturization and scale-up will also be Students wishing to complete a thesis may do so by embark-
discussed. ing on a two semester thesis project, which includes 410.800
Prerequisites: All four core courses and 410.696 Bioassay Independent Research in Biotechnology and 410.801 Bio-
Development. technology Thesis courses. This project must be a hypothesis-
based original research study. The student must complete
410.754 Comparative Microbial Genomics: From 410.800 Independent Research in Biotechnology and fulfill
Sequence to Significance the requirements of that course, including submission of
Hundreds of bacterial and archaeal genomes have been com- project proposal, final paper and poster presentation, before
pletely sequenced and thousands more will follow in the near enrolling in the subsequent thesis course. For the thesis
future. In this course we will learn how to make sense of this course, students are required to submit a revised proposal (an
53
Bioinformatics
update of the 410.800 Independent Research in Biotechnol- or five substantial Java programming assignments. (Not for
ogy proposal) for review and approval by the faculty advisor graduate credit.)
and biotechnology program committee one month prior to Prerequisites: One year of college mathematics. 605.201
the beginning of the term. Students must meet the faculty Introduction to Programming Using Java or equivalent.
advisor periodically for discussion of the project’s progress.
Graduation with a thesis is subject to approval by the thesis Chlan, Resch, Tjaden
committee and program committee, and requires the student
to present their project to a faculty committee both orally 605.401 Foundations of Software Engineering
and in writing. Fundamental software engineering techniques and meth-
Prerequisites: All four core science courses and six elective odologies commonly used during software development are
Graduate Programs
courses, which must include 410.800 Independent Research studied. Topics include various life cycle models, project
in Biotechnology and 410.645 Biostatistics. planning and estimation, requirements analysis, program
Thesis Guidelines: If students work on sponsored research, design, construction, testing, maintenance and implementa-
the thesis advisor (or sponsoring institution) and the stu- tion, software measurement, and software quality. Empha-
dent should sign a letter of agreement on publication rights sized are structured and object-oriented analysis and design
and authorship before work on the thesis begins. Research techniques, use of process and data models, modular prin-
expenses, such as lab supplies, related travel, and services ciples of software design, and a systematic approach to testing
essential to the collecting and processing of data, are paid for and debugging. The importance of problem specification,
by the thesis advisor or sponsoring organization. Special costs programming style, periodic reviews, documentation, thor-
of thesis production, such as typing, art work, and duplicat- ough testing, and ease of maintenance are covered.
ing of the thesis, are the student’s responsibility. Ligozio, Lindberg, Schappelle, Wichmann, Yufik
Thesis Format: The student must follow the university’s 605.421 Foundations of Algorithms
“Guidelines for the Preparation of Dissertations and The- This follow-on course to data structures (e.g., 605.202)
ses,” to ensure thesis acceptance. The guidelines are available provides a survey of computer algorithms, examines fun-
at library.jhu.edu/services/cbo/guidelines.html damental techniques in algorithm design and analysis, and
Thesis Committee: The thesis committee includes the thesis develops problem-solving skills required in all programs of
advisor (mentor), faculty advisor, and a member of the pro- study involving computer science. Topics include advanced
gram committee (or their designate). data structures (red-black and 2-3-4 trees, union-find),
recursion and mathematical induction, algorithm analysis
605.201 Introduction to Programming Using Java and computational complexity (recurrence relations, big-O
This course enables students without a background in soft- notation, NP-completeness), sorting and searching, design
ware development to become proficient programmers who paradigms (divide and conquer, greedy heuristic, dynamic
are prepared for a follow-on course in data structures. The programming, amortized analysis), and graph algorithms
Java language will be used to introduce foundations of struc- (depth-first and breadth-first search, connectivity, minimum
tured, procedural, and object-oriented programming. Topics spanning trees, network flow). Advanced topics are selected
include I/O, data types, operators, operands, expressions, from among the following: randomized algorithms, informa-
conditional statements, iteration, recursion, arrays, functions, tion retrieval, string and pattern matching, and computa-
parameter passing, and returning values. Students will also be tional geometry.
introduced to classes, objects, object references, inheritance, Prerequisite: 605.202 Data Structures or equivalent.
polymorphism, and exception handling. Additional topics
Recommended: 605.203 Discrete Mathematics or equivalent.
include file I/O, searching, sorting, Java Collections, and
an introduction to Applets. Students will complete several Lew, Maurer, Rodriguez, Sadowsky, Sheppard
programming assignments to develop their problem-solving 605.441 Principles of Database Systems
skills and to gain experience in detecting and correcting soft-
This course examines the underlying concepts and theory
ware errors. (Not for graduate credit)
of database management systems. Topics include database
Prerequisite: One year of college mathematics. system architectures, data models, query languages, concep-
Chittargi, Ferguson, Shyamsunder, Smith tual and logical database design, physical organization, and
transaction management. The entity-relationship model and
605.202 Data Structures relational model are investigated in detail, object-oriented
This course investigates abstract data types (ADTs), recur- databases are introduced, and legacy systems based on the
sion, algorithms for searching and sorting, and basic algo- network and hierarchical models are briefly described. Map-
rithm analysis. ADTs to be covered include lists, stacks, pings from the conceptual level to the logical level, integrity
queues, priority queues, trees, sets, and dictionaries. The constraints, dependencies, and normalization are studied as a
emphasis is on the trade-offs associated with implementing basis for formal design. Theoretical languages such as the rela-
alternative data structures for these ADTs. There will be four tional algebra and the relational calculus are described, and
54
Bioinformatics
high-level languages such as SQL and QBE are discussed. gene-finding algorithms; phylogenic tree construction; and
An overview of file organization and access methods is pro- clustering algorithms.
vided as a basis for discussion of heuristic query optimization Prerequisites: Familiarity with probability and statistics; work-
techniques. Finally, transaction processing techniques are ing knowledge of Java, C++, or C; 605.205 Molecular Biol-
presented with a specific emphasis on concurrency control ogy for Computer Scientists or a course in molecular biology
and database recovery. and a course in either cell biology or biochemistry.
Kung, Liu Przytycka, Rogozin
605.443 The Semantic Web 605.452 Biological Databases and Database Tools
The Semantic Web is an activity by the WWW Consortium The sequencing of the human genome and intense interest
Graduate Programs
to create a large set of XML-based languages, along with in proteomics and molecular structure have resulted in an
information on how various tags relate to real-world objects explosive need for biological databases. This course surveys a
and concepts. This course covers Semantic Web technologies, wide range of biological databases and their access tools, and
including RDF (Resource Description Format—a structure enables students to develop proficiency in their use. Databas-
for describing and interchanging metadata on the web) and es introduced include genome and sequence databases such
OWL (Web Ontology Language), with domain-specific as GenBank and Ensemble, as well as protein databases such
standards and ontologies (formal specifications of how to as PDB and SWISS-PROT. Tools for accessing and manipu-
represent objects and concepts). Representative applications lating sequence databases such as BLAST, multiple align-
of RDF, OWL, and ontologies will be discussed. Students ment, Perl, and gene finding tools are covered. Specialized
will complete a Semantic Web project in an application area databases such as KEGG and HapMap are surveyed for their
of interest to them. Examples will be drawn from several design and use. The course also focuses on the design of bio-
application areas. logical databases and examines issues related to heterogeneity,
Prerequisite: 605.444 XML Design Paradigms or equivalent. interoperability, complex data structures, object orientation,
Cost and tool integration. Students will create their own small
database as a course project and will complete homework
605.444 XML Design Paradigms assignments using biological databases and database tools.
Formerly 635.444 XML: Technology and
Prerequisites: 605.205 Molecular Biology for Computer Sci-
Applications.
entists or equivalent.
The course explores understanding the tradeoffs among XML
grammars and XML techniques to solve different classes of Recommended: 605.441 Principles of Database Systems or
problems. Topics include: optimization of XML grammars 410.634 Practical Computer Concepts for Bioinformatics.
for different XML technologies; benefits of using different Hobbs
XML schema languages; tradeoffs in using different parsing
approaches; benefits of parsing technology vs. XML query; 605.453 Computational Genomics
the role of Web 2.0 to deliver functionality through various This course focuses on current problems of computational
web services approaches; exploiting XML to drive audio, genomics. Students will use bioinformatics software and
visual, and tactile displays; the role of XML in multiplying learn the principles underlying a variety of bioinformatics
the power of standard web browser technologies; and the algorithms. In addition, students will explore and discuss
role of Web 3.0 to deliver Semantic Web functionality. XML bioinformatics research, and develop software tools to solve
technologies that will be covered include: XML Schema, bioinformatics problems. Topics include analyzing eukary-
XPath, XSLT, SAX, DOM, XQuery, SOAP, WSDL, JAX-B, otic, bacterial, and viral genes and genomes; finding genes in
JAX-WS, REST, RDF, and OWL. genomes and identifying their biological functions; predict-
Prerequisite: 605.481 Principles of Enterprise Web Develop- ing regulatory sites; assessing gene and genome evolution;
ment or equivalent Java experience. and analyzing gene expression data.
Chittargi, Silberberg Prerequisites: 605.205 Molecular Biology for Computer Sci-
entists or equivalent, and familiarity with probability and
605.451 Principles of Computational Biology statistics.
This course is an interdisciplinary introduction to com- Ermolaeva
putational methods used to solve important problems in
DNA and protein sequence analysis. The course focuses on 605.456 Computational Drug Discovery and
algorithms but includes material to provide the necessary Development
biological background for science and engineering students. Recent advances in bioinformatics and drug discovery plat-
Algorithms to be covered include dynamic programming forms have brought us significantly closer to the realization
for sequence alignment, such as Smith-Waterman, FASTA, of rational drug design and development. Across the phar-
and BLAST; hidden Markov models, such as the forward, maceutical industry, considerable effort is being invested in
Viterbi, and expectation maximization algorithms; a range of developing experimental and translational medicine, and it
55
Bioinformatics
is starting to make a significant impact on the drug discovery ties more quickly to enable organizations to remain competi-
process itself. This course examines the major steps of the tive. This pressure has led to the development of languages
evolving modern drug discovery platforms, the computa- and frameworks geared toward rapid prototyping, with Ruby
tional techniques and tools used during each step of rational on Rails being the most popular. Ruby on Rails is a Model-
drug discovery, and how these techniques facilitate the inte- View-Controller (MVC) framework that enables efficient
gration of experimental and translation medicine with the application development and deployment. Techniques such
discovery/development platforms. The course will build on as Convention over Configuration and Object-Relational
concepts from a number of areas including bioinformatics, Mapping with Active Record along with enhanced AJAX
computational genomic/proteomics, in-silico system biology, support offer a simple environment with significant produc-
computational medicinal chemistry, and pharmaceutical bio- tivity gains. This code-intensive course introduces Ruby on
Graduate Programs
technology. Topics covered in the course include comparative Rails, the patterns it implements, and its applicability to the
pharmacogenomics, protein/antibody modeling, interaction rapid development of collaborative applications.
and regulatory networks, QSAR/pharmacophores, ADME/ Prerequisite: 605.481 Principles of Enterprise Web Develop-
toxicology and clinical biomarkers. Relevant mathematical ment or equivalent.
concepts are developed as needed in the course. Hazins
Prerequisite: 605.205 Molecular Biology for Computer Sci-
entists, or equivalent. 605.486 Mobile Application Development for the
Kumar Android Platform
This project-oriented course will investigate the issues sur-
605.462 Data Visualization rounding application development for mobile platforms.
This course explores the underlying theory and practical First, we will look at techniques for building applications
concepts in creating visual representations of large amounts that adapt to the ways in which mobile apps differ from tra-
of data. It covers the core topics in data visualization: data ditional desktop or Web-based apps: constrained resources,
representation, visualization toolkits, scientific visualization, small screen sizes, varying display resolutions, intermittent
medical visualization, information visualization, flow visual- network connectivity, specialized sensors, security restric-
ization, and volume rendering techniques. The related topics tions, and so forth. Second, we will look at best practices for
of applied human perception and advanced display devices making mobile applications flexible: using XML-based lay-
are also introduced. outs, managing multimedia, storing user data, networking
Prerequisite: Experience with data collection/analysis in data- via Bluetooth and Wi-Fi, determining device location and
intensive fields or background in computer graphics orientation, deploying applications, and gracefully handling
Recommended: 605.467 Computer Graphics shutdowns and restarts to the application. Optional topics
may include embedding Web components with WebKit,
Chlan
showing maps with the Google Maps plugin, and storing
605.481 Principles of Enterprise Web Development local data with SQLite. Students will be provided links
This course examines three major topics in the development to download free tools for building and testing Android
of applications for the World Wide Web. The first is web site apps; there is no requirement that students own a physical
development using HTML and related standards. The sec- Android device.
ond is the implementation of client-side applications using Prerequisite: 605.481 Principles of Enterprise Web Develop-
the Java programming language, including user interface ment, or equivalent Java experience.
development, asynchronous event handling, multithread- Stanchfield
ed programming, and network programming. Distributed
object protocols via RMI or CORBA and distributed data- 605.716 Modeling and Simulation of Complex
base access via JDBC may also be introduced. The third Systems
topic is the design of server-side web applications, for which This course focuses on the application of modeling and simu-
students will examine the underlying Web protocol (HTTP), lation principles to complex systems. A complex system is a
the development of client-side interfaces (e.g., via HTML large-scale nonlinear system consisting of interconnected or
forms), and the implementation of server-side programs (e.g., interwoven parts (such as a biological cell, the economy, or
via Java servlets or traditional CGI). an ecological system). The course begins with an overview of
Evans, Naber, Shyamsunder, Spiegel complex systems, followed by modeling and simulation tech-
niques based on nonlinear differential equations, networks,
605.484 Agile Development with Ruby on Rails stochastic models, cellular automata, and swarm-like systems.
Modern web applications are expected to facilitate collabora- Existing software systems will be used to illustrate systems
tion, with user participation being a significant facet of the and provide practical experience. During the semester, each
system. Components such as wikis, blogs, and forums are student will complete a modeling project of a complex sys-
now commonplace. While feature sets continue to expand, tem. While this course is intended for computer science
there is continuing pressure to develop and deploy capabili- or engineering students interested in modeling any com-
56
Bioinformatics
plex system, it may also be taken by Bioinformatics students 605.747 Evolutionary Computation
interested in modeling complex biological systems. Students Recently, principles from the biological sciences have moti-
interested in bioinformatics will study a parallel track expos- vated the study of alternative computational models and
ing them to existing whole cell modeling tools such as E-Cell, approaches to problem solving. This course explores how
COPASI, and BioSpice. principles from theories of evolution and natural selection
Prerequisites: Knowledge of elementary probability and statis- can be used to construct machines that exhibit nontrivial
tics and previous exposure to differential equations. Students behavior. In particular, the course covers techniques from
applying this course to the MS in Bioinformatics should also genetic algorithms, genetic programming, and artificial life
have completed at least one Bioinformatics course prior to for developing software agents capable of solving problems
enrollment. as individuals and as members of a larger community of
Graduate Programs
agents. Specific topics addressed include representation and
Note: This course may be counted toward a three course schemata; selection, reproduction, and recombination; theo-
concentration in Bioinformatics. retical models of evolutionary computation; optimal alloca-
Weisman tion of trials (i.e., bandit problems); search, optimization,
and machine learning; evolution of programs; population
605.741 Distributed Database Systems: dynamics; and emergent behavior. Students will participate
Cloud Computing and Data Warehouses in seminar discussions and will complete and present the
Formerly 605.741 Distributed Database Systems results of an individual project.
This course investigates the architecture, design, and imple- Prerequisite: 605.445 Artificial Intelligence is recommended
mentation of massive-scale data systems. The course discusses but not required.
foundational concepts of distributed database theory includ- Sheppard
ing design and architecture, security, integrity, query process-
605.751 Computational Aspects of Molecular
ing and optimization, transaction management, concurrency
Structure
control, and fault tolerance. It then applies these concepts
to both large-scale data warehouse and cloud computing This course focuses on computational methods for study-
systems. The course blends theory with practice, with each ing protein and RNA structure, protein-protein interactions
student developing both distributed database and cloud com- and biological networks. Algorithms for prediction of RNA
puting projects. secondary structure, protein-protein interactions, annota-
tion of protein secondary/tertiary structure and function
Prerequisites: 605.441 Principles of Database Systems, and or are studied in depth. Students will apply various computer
equivalent knowledge of Java and HTML. programs and structure-visualization software to secondary
Recommended: Familiarity with “Big Oh” concepts and and tertiary protein structure prediction, structure-structure
notation. comparison, protein domain classification, annotation of
functionally important sites, and protein design. Interesting
Silberberg
aspects of protein interaction and metabolic networks are
605.746 Machine Learning also discussed.
How can machines improve with experience? How can they Prerequisites: 605.205 Molecular Biology for Computer Sci-
discover new knowledge from a variety of data sources? entists or equivalent.
What computational issues must be addressed to succeed? Recommended: 605.451 Principles of Computational Biology.
These are questions that are addressed in this course. Topics Przytycka and Panchenko
range from determining appropriate data representation and
models for learning, understanding different algorithms for 605.754 Analysis of Gene Expression and High-
knowledge and model discovery, and using sound theoretical Content Biological Data
and experimental techniques in assessing performance. Spe- The development of microarray technology, rapid sequenc-
cific approaches covered include statistical techniques (e.g., ing, protein chips, and metabolic data has led to an explo-
k-nearest neighbor and Bayesian learning), logical techniques sion in the collection of “high-content” biological data. This
(e.g., decision tree and rule induction), function approxima- course explores the analysis and mining of gene expression
tion (e.g., neural networks and kernel methods), and rein- data and high-content biological data. A survey of gene and
forcement learning. The topics are discussed in the context of protein arrays, laboratory information management systems,
current machine learning and data mining research. Students data normalization, and available tools is followed by a more
will participate in seminar discussions and will complete and in-depth treatment of differential gene expression detection,
present the results of an individual project. clustering techniques, pathway extraction, network model
building, biomarker evaluation, and model identification.
Prerequisite: 605.445 Artificial Intelligence is recommended, Both clinical and research data will be considered. The stu-
but not required. dent will develop skills in statistical analysis and data mining
Sheppard including statistical detection theory, nonlinear and mul-
57
Bioinformatics
tiple regression, entropy measurement, detection of hidden 605.782 Web Application Development with Java
patterns in data, heuristic search and learning algorithms. Formerly 605.782 Web Application Development
Applied mathematical concepts and biological principles will with Servlets and JavaServer Pages (JSP)
be introduced, and students will focus on algorithm design This project-oriented course will enable the students to use
and software application for designing and implementing various techniques for building browser-based applications
novel ways of analyzing gene, protein and metabolic expres- for dynamically generated websites, e-commerce, web-
sion data. Students will complete data analysis assignments enabled enterprise computing, and other applications that
individually and in small teams. require web access to server-based resources. Particular atten-
Prerequisites: 605.205 or equivalent or a prior course in bio- tion will be paid to methods for making web-based applica-
informatics, a course in probability and statistics, and ability tions efficient, maintainable, and flexible. The course will
Graduate Programs
to program in a high-level language. use at least two sets of tools: servlets/JSP and a higher-level
Note: There are no exams, but programming assignments are Java-based framework such as JSF 2.0. Major topics will
intensive. Students in the M.S. Bioinformatics program may include handling HTTP request information, generating
take both this course and 410.671 Microarrays and Analysis HTTP response data, tracking sessions, designing custom tag
as the content is largely mutually exclusive. libraries or components, page templating, asynchronous page
Staff updates with Ajax, and separating content from presentation
through use of the MVC architecture. Additional topics may
605.755 Systems Biology include HTML5, database access techniques for web apps,
During the last decade, systems biology has emerged as an web app security, and dependency injection in web apps (e.g.,
effective tool for investigation of complex biological prob- with the Spring framework).
lems, placing emphasis on the analysis of large-scale datasets Prerequisite: Principles of Enterprise Web Development or
and quantitative treatment of experimental results. In this equivalent Java experience.
course students will explore recent advances in systems biol- Chaikin, Chittargi, Hall
ogy analysis of intracellular processes. Examples of modeling
and experimental studies of metabolic, genetic, signal trans- 605.787 Rich Internet Applications with Ajax
duction and cell cycle regulation networks will be studied Using a web browser to access online resources is convenient
in detail. The classes will alternate between consideration of because it provides universal access from any computer on any
network-driven and network element (gene, metabolite, or operating system in any location. Unfortunately, it often results
protein) -driven approaches. Students will learn to use Bool- in a poor user experience because HTML is a weak and non-
ean, differential equations, and stochastic methods of analysis interactive display language and HTTP is a weak and ineffi-
and will become acquainted with several powerful experi- cient protocol. Full-fledged browser-embedded programs (e.g.,
mental techniques, including basics of microfabrication and ActiveX components, Java applets) have not succeeded in pen-
microfluidics. As a course project, students will develop a etrating the market adequately, so a new class of applications
model of a signal transduction or metabolic pathway. has grown up that uses only the capabilities already available
Prerequisites: Courses in molecular biology (605.205 Molecu- in most browsers. These applications were first popularized by
lar Biology for Computer Scientists or 410.602 Molecular Google, but have since exploded in popularity throughout the
Biology) and differential equations. developer community. The techniques to implement them
Levchenko were based on a group of technologies collectively known as
Ajax, and the resultant applications were richer than the rela-
605.759 Independent Project in Bioinformatics tively static pure-HTML-based web applications that preceded
This course is for students who would like to carry out a them. These applications have become known as Ajax appli-
significant project in bioinformatics as part of their graduate cations, rich internet applications, or Web 2.0 applications.
program. The course may be used to conduct minor research, This course will examine techniques to develop and deploy
an in-depth literature survey, or a software implementation Ajax applications. We will look at the underlying techniques,
related to recent developments in the field. Students who then explore client-side tools (e.g., scriptaculous), server-side
enroll in this course are encouraged to attend at least one tools (e.g., Direct Web Remoting), and hybrid tools (e.g., the
industry conference in bioinformatics related to their area Google Web Toolkit) to simplify the development process. We
of study. To enroll in this course, the student must be with- will also examine closely related technologies such as Flash/
in two courses of degree completion and must obtain the Flex and OpenLaszlo, along with the accompanying issues of
approval and support of a sponsoring faculty member. usability, efficiency, security, and portability.
Note: A student may not receive credit for both 605.759 and Prerequisite: 605.782 Web Application Development with
605.802 Independent Study in Computer Science II. Java or equivalent servlet and JSP experience.
Staff Chaikin, Hall, Shyamsunder
58
Chemical and Program Requirements

Upon entering the program, students must complete a pro-
Biomolecular gram plan and submit it to the program chair for approval.
Candidates must complete the required course work within
five years of admission.
Engineering Requirements for Master of Chemical and
In the past decade, the scope of chemical and biomolecular Biomolecular Engineering
engineering has expanded dramatically. While many chemi- To earn the Master of Chemical and Biomolecular Engineer-
cal engineers continue to work in the chemical and petroleum ing degree, a student must complete at least 10 one-term
industries, a growing number can also be found employed by
Graduate Programs
courses approved by the student’s advisor. Of these, at least
biotechnology and pharmaceutical companies, electronics six courses must be from the Chemical and Biomolecular
manufacturing facilities, or the environmental divisions of Engineering Department. Students are allowed to count 400-
corporations or government institutions. In each of these level courses toward their MSE degree if (1) the course is not
industries, the chemical engineering concepts of transport offered at the 600-level and (2) if the department offering
phenomena, reaction kinetics, and thermodynamics are fun- the course considers it to be a graduate-level course. Courses
damental to technical issues addressed by engineers. offered at both the 400- and 600-level must be taken at the
To recognize the growing need for chemical and bio- 600 level.
molecular engineers to acquire a broad range of skills in Students are strongly encouraged to take the following
the basic sciences and related engineering fields, in addi- four courses as part of their course requirements:
tion to advanced training in core chemical and biomolecular 545.602 Cellular and Molecular Biotechnology of
engineering competencies, Johns Hopkins has developed Mammalian Systems
a flexible Master of Chemical and Biomolecular Engineer-
545.615 Interfacial Science with Applications to
ing program with concentrations in two subfields: Cell and
Nanoscale Systems
Molecular Biotechnology/Biomaterials, and Nano/Micro-
technology and Colloids and Interfaces. Hopkins will also 545.630 Thermodynamics and Statistical Mechanics
continue to offer the traditional Master of Chemical Engi- 545.652 Fundamentals of Biotransport Phenomena
neering degree in which the student develops a core program In addition, the remaining two to four courses can be from
in chemical and biomolecular engineering, augmented with the Whiting School’s Engineering for Professionals program
elective courses from related engineering fields, the basic sci- (EP) and no more than two courses can be selected from the
ences, and mathematics. This degree encompasses a profes- Krieger School of Arts and Sciences Advanced Academic
sional, non-thesis curriculum for practicing engineers. Program in Biotechnology (courses listed under Group III).
If a course is not offered in a given term, students may seek
Program Committee advice from the Program Director regarding appropriate
substitutions.
Michael Betenbaugh, Program Chair
Assistant Professor, Chemical and
Requirements for Master of CBE with a
Biomolecular Engineering
Concentration in Cell and Molecular
Biotechnology/Biomaterials
Konstantinos Konstantopoulos,, Department Chair Within the past two decades, remarkable advances have taken
Professor, Chemical and Biomolecular Engineering place in the life sciences. Chemical and biomolecular engi-
Whiting School of Engineering neers will be essential for putting many of these basic sci-
ence discoveries into practical use. To accomplish these goals,
Admissions Requirement chemical engineers must understand biology and communi-
Applicants must be in the last semester of their undergradu- cate with the life scientists. EP offers a program that provides
ate study or hold a bachelor’s degree in chemical engineering chemical engineering students with complementary exposure
from an accredited college or university. They must have to the life sciences and biomedical engineering. To earn the
earned a grade point average of at least 3.0 on a 4.0 scale in Master of Chemical Engineering/Cell and Molecular Bio-
upper-level undergraduate courses or hold a graduate degree technology/Biomaterials, the student will work with his or
in a technical discipline. Applicants with a bachelor’s degree her advisor to take courses that will give a solid foundation
in a related science or engineering field may be considered in Cell and Molecular Biotechnology/Biomaterials.
if they have taken a sufficient number of undergraduate Some of the electives that will count toward the course
chemical and biomolecular engineering courses. (See addi- requirements include:
tional admission requirements for non-chemical engineer- 545.602 Cellular and Molecular Biotechnology of
ing majors below.) All admission decisions are made by the Mammalian Systems
program committee on a case-by-case basis. 510.607 Biomaterials II
59
545.614 Computational Protein Structure Group II: Whiting School Applied Biomedical
Prediction and Design Engineering Courses
545.615 Interfacial Science with Applications to 580.625-626 Structure and Function of the Auditory
Nanoscale Systems and Vestibular Systems
510.617 Advanced Topics in Biomaterials 580.632 Ionic Channels in Excitable Membranes
545.626 Introduction to Biomacromolecules 585.405-406 Physiology for Applied Biomedical
545.637 Molecular Evolution of Biotechnology Engineering
545.652 Fundamentals of Biotransport Phenomena 585.407 Molecular Biology
Additionally, students may complete two to three courses 585.408 Medical Sensors and Devices
Graduate Programs
selected from either the Group II offerings of the Whiting 585.605 Medical Imaging
School Master of Science in Applied Biomedical Engineering 585.606 Medical Image Processing
program and/or Group III offerings of the Krieger School 585.608 Biomaterials
of Arts and Sciences Master of Science in Biotechnology
585.609 Cell Mechanics
program.
Requirements for Master of CBE with a 585.618 Biological Fluid and Solid Mechanics
Concentration in Nano/Microtechnology and
Colloids and Interfaces Group III: Krieger School Biotechnology Core Courses
Nano and microtechnology involve the science and technol- and Elective Courses
ogy of extreme miniaturization. We live in an era where it 410.601 Advanced Biochemistry
has become possible to structure materials and devices on 410.602 Molecular Biology
the nanometer length scales to allow for unprecedented con- 410.603 Advanced Cell Biology I
trol over the chemical, electronic, and optical properties
410.645 Biostatistics
of materials. Moreover, when the size of the structures and
devices approaches the nanometer-length scales, quantum
and atomistic properties dominate, giving rise to new and Additional Admission Requirements for Non-
novel phenomena such as quantum conductance and unusu- Chemical Engineering Majors
al chemical, mechanical, and optical properties. This degree In order to be considered for the Master of Chemical Engi-
will focus on the challenges of fabricating such small struc- neering Program, undergraduates with a bachelor’s degree
tures and devices, methods to characterize the structures, fun- in a science or other engineering discipline must have a
damental properties, and applications. To earn the Master of background in mathematics through differential and inte-
Chemical Engineering Nano/Microtechnology and Colloids gral calculus and differential equations and have completed
and Interfaces, the student will work with his or her advisor undergraduate course work in physical chemistry and ther-
to take courses that will give a solid foundation in Nano/ modynamics. In addition, the applicants must complete the
Microtechnology and Colloids and Interfaces. following undergraduate chemical engineering courses from
the day program of the Whiting School of Engineering or
Some of the electives that will count toward the course other peer institution:
requirements include:
520.772 Advanced Integrated Circuits Group IV: Whiting School of Engineering Non-
545.604 Therapeutic and Diagnostic Colloids Chemical Engineering Majors Prerequisite Courses
545.615 Interfacial Science with Applications to In some cases, undergraduate courses from other engineering
Nanoscale Systems or science disciplines may be substituted for these chemi-
545.640 Micro and Nanotechnology cal engineering courses when there is significant overlap in
course material. For those applicants who can demonstrate
545.630 Thermodynamics and Statistical Mechanics
significant undergraduate preparation in a particular area, the
related undergraduate course requirement may be waived.
Program Electives Permission to substitute other undergraduate courses or
Group I: Whiting School Chemical and Biomolecular waive course requirements will be at the discretion of the
Engineering Elective Courses program chair.
545.603 Colloids and Nanoparticles 545.203 Engineering Thermodynamics
545.610 Fundamentals of Membrane Science for 545.204 Applied Physical Chemistry
Filtration Applications 545.301 Kinetic Processes
545.626 Introduction to Biomacromolecules 545.303 Transport Phenomena I
545.640 Micro and Nanotechnology 545.304 Transport Phenomena II
60
Course Descriptions
545.202 Introduction to Chemical Engineering analyses, including CSTRs in series; selectivity and optimiza-
Process Analysis tion considerations in multiple reaction systems; nonisother-
This course provides an introduction to chemical engineering mal reactors; elements of heterogeneous kinetics, including
and the fundamental principles of chemical process analysis, adsorption isotherms and basic Hougen-Watson rate mod-
including formulation and solution of material and energy els; coupled transport and chemical reaction rates; and fixed
balances on chemical processes. Reductionist approaches to bed reactor design, including axial dispersion models. A brief
the solution of complex, multiunit processes will be empha- introduction to residence time distributions and nonideal
sized, along with an introduction to the basic concepts of ther- reactor models is also provided. (Not for graduate credit)
Graduate Programs
modynamics and chemical reactions. (Not for graduate credit) Prerequisites: 540.203 Engineering Thermodynamics, 540.303
Prerequisites: 030.101 Introductory Chemistry, 171.101 Transport Phenomena I, and either 540.202 or permission of
General Physics for Physical Science Majors I. instructor.
Dahuron, Prakash Cui, Goffin
545.203 Engineering Thermodynamics 545.303 Transport Phenomena I

This course covers the formulation and solution of material, This course provides an introduction to the field of transport
energy, and entropy balances with an emphasis on open sys- phenomena, including molecular mechanisms of momentum
tems. A systematic problem-solving approach is developed transport (viscous flow); energy transport (heat conduction);
for chemical process-related systems. This approach consists mass transport (diffusion); isothermal equations of change
of decoupling the process into its components, establishing (continuity, motion, and energy); the development of the
relationships between the known and unknown variables, Navier Stokes equation; the development of nonisothermal
assembling the information needed to solve for the unknown and multicomponent equations of change for heat and mass
variables, and then obtaining a physically meaningful solu- transfer; and exact solutions to steady state, isothermal uni-
tion. Extensive use is made of classical thermodynamic rela- directional flow problems and to steady state heat and mass
tionships and constitutive equations. Applications include transfer problems. The analogies between heat, mass, and
the analysis and design of engines, refrigerators, heat pumps, momentum transfer are emphasized throughout the course.
compressors, and turbines. (Not for graduate credit) (Not for graduate credit)
Prerequisites: 030.101 Introductory Chemistry, 171.101 Prerequisites: A grade of C or better in Calculus I, II, and III
General Physics for Physical Science Majors I and either and 540.202 or permission of instructor.
540.202 or permission of instructor. Corequisite: 500.303 Applied Mathematics I.
Corequisite: 110.202 Calculus III (Calculus of Several Variables). Konstantopoulos, Prakash
Frechette
545.304 Transport Phenomena II
545.204 Applied Physical Chemistry Topics covered in this course include dimensional analysis
This course offers an introduction to the methods used to and dimensionless groups, laminar boundary layers, intro-
solve phase and chemical equilibria problems. The basic ther- duction to turbulent flow, definition of the friction factor,
modynamic relationships to describe phase equilibrium of macroscopic mass, momentum and mechanical energy bal-
single-component and multicomponent systems are devel- ances (Bernoulli’s equation), metering of fluids, convective
oped. Thermodynamic models for calculating fugacity are heat and mass transfer, heat and mass transfer in boundary
presented. These include equations of state, liquid solution layers, correlations for convective heat and mass transfer,
models, and fugacity estimation methods. Multicomponent boiling and condensation, and interphase mass transfer. (Not
phase equilibrium problems addressed are cover liquid-vapor, for graduate credit)
liquid-liquid, liquid-liquid-vapor, and solid-vapor. Basic ther- Prerequisites: 540.303 Transport Phenomena I and either
modynamic relationships to describe chemical equilibria are 540.202 or permission of instructor.
also developed and the thermodynamic models for calculating Drazer
fugacity are applied to their solution. (Not for graduate credit)
Prerequisites: 540.203 Engineering Thermodynamics and 545.305 Modeling and Statistical Analysis of Data
either 540.202 or permission of instructor. for Chemical and Biomolecular Engineers
Gracias Collecting and analyzing data is an indispensable component
of any scientific enterprise. The sequence of operations that
545.301 Kinetic Processes is typical in science is: hypothesis to data to inference. Since
This course provides a review of numerical methods in reactor data is almost always imperfect (or incomplete), we have to
design, including homogeneous kinetics, and interpretation rely on probability theory to infer the validity of the hypoth-
of reaction rate data; batch, plug flow, and stirred tank reactor esis. In this course, we adopt the Laplace-Bayes approach to
61
probability theory and suggest how we can use this approach 545.420 Build-a-Genome
to reason in situations of imperfect data. Concepts such as In this combination lecture/laboratory “Synthetic Biology”
determining the odds ratio, and the role of Occam’s factor, course, students will learn how to make DNA building blocks
will be discussed. We will motivate commonly encountered used in an international project to build the world’s first syn-
probability distributions using examples in chemical engi- thetic eukaryotic genome, Saccharomyces cerevisiae v. 2.0.
neering. Modeling is an indispensable component of data Please study the wiki www.syntheticyeast.org for more details
analysis, and we will rely on MATLAB and Python program- about the project. Following a biotechnology boot-camp,
ming environments to become familiar with computational students will have 24/7 access to computational and wet-lab
aspects of data analysis. (Not for graduate credit) resources and will be expected to spend 15-20 hours per
Prerequisites: 540.202. week on this course. Advanced students will be expected to
Graduate Programs
Recommended co-requisites: 540.203, 540.303, 540.304. contribute to the computational and biotech infrastructure.
Asthagiri Prerequisites: Permission of instructors. Interview required.
Must understand the fundamentals of DNA structure, DNA
545.306 Chemical and Biological Separations electrophoresis and analysis, polymerase chain reaction
This course covers principles of staged and continuous-con- (PCR), and must be either experienced with molecular biol-
tacting separation processes. Examples include adsorption, ogy lab work or adept at programming with a biological twist.
distillation, extraction, and process synthesis. (Not for gradu- Note: Co-listed with 020.420, 020.451, and 580.420.
ate credit)
Ostermeier
Prerequisites: 540.202 Introduction to Chemical Engineering
Process Analysis and 540.303 Transport Phenomena I.
545.426 Introduction to Biomacromolecules
Betenbaugh
This course introduces modern concepts of polymer physics
545.311 Chemical Engineering Laboratory to describe the conformation and dynamics of biological
macromolecules such as filamentous proteins and nucleic
Students learn to characterize equipment whose operation is
acids. We will introduce scattering techniques, microma-
not well defined by identifying the important operating vari-
nipulation techniques, as well as rheology, applied to the
ables, deciding how best to obtain them, and using measured
study of polymers.
or calculated values of these operating variables to predict and
improve performance. Each student analyzes four of the fol- Wirtz
lowing experiments: distillation, gas absorption, liquid-liquid
extraction, chemical kinetics in a tubular flow reactor, and 545.437 Application of Molecular Evolution to
fermentation. In addition to technical objectives, this course Biotechnology
stresses oral and written communication skills and the ability One of the most promising strategies for successfully design-
to work effectively in groups. (Not for graduate credit) ing complex biomolecular functions is to exploit nature’s
Prerequisites: 540.301 Chemical Kinetics, 540.304 Transport principles of evolution. This course provides an overview of
Phenomena II, 540.306 Mass Transfer and either 540.202 or the basics of molecular evolution as well as its experimental
permission of instructor, and 540.490 Chemical and Labora- application to the engineering of proteins, DNA, and RNA
tory Safety. with functions of therapeutic, scientific, or economic value.
Dahuron, Gerecht, Goffin, Ostermeier The course will cover the generation of diversity (e.g., muta-
genesis and DNA shuffling), the coupling of genotype and
545.314 Chemical Engineering Process Design phenotype (e.g., surface display of proteins and peptides),
This course provides an introduction to design methods and methods for screening and selection.
for multiunit processes, including flowsheet development Prerequisites: Junior standing and a basic understanding of
through reaction and separation-path synthesis; degree of recombinant DNA technology.
freedom analysis for large systems; equipment design and Ostermeier
specification; and estimation of capital costs, operating
costs, and cash flow. Other topics include optimization tech- 545.440 Micro and Nanotechnology
niques and energy integration. Simulation packages, such as
Micro/nanotechnology is the field of fabrication, character-
ChemCAD, are also introduced. Written reports and oral
ization, and manipulation of extremely small objects (dimen-
presentations are required on assigned design projects. (Not
sions on the micron to nanometer length scale). Microscale
for graduate credit)
objects, because of their small size, are expected to be at the
Prerequisites: 540.301, 540.304, 540.306, and either 540.202 frontier of technological innovation for the next decade. This
or permission of instructor. course will include a description of the materials used in
Dahuron, Goffin microtechnology, methods employed to fabricate nanoscale
objects, techniques involved in characterizing and exploiting
the properties of small structures, and examples of how this
62
technology is revolutionizing the areas of electronics and communication; cell adhesion; extracellular matrix; intro-
medicine. ductory glycobiology; cell structure, including membrane,
Note: This course is cross-listed with 540.640. cytoskeleton, organelles, proteins secretion and degradation;
cell replication and death, including: cell cycle, cell division,
Gracias
senescence, and apoptosis; multicellular systems, including:
545.447 System Safety and Risk Management fertilization; tissue development, including nervous system,
ectoderm (neuronal crest), mesoderm, endoderm meta-
Methods, mathematics, and management approaches for
morphosis, regeneration, and aging; and stem cell biology,
evaluating the safety of complex technical systems are pre-
including adult and fetal stem cells, germ and embryonic
sented. Examples of risk assessments pertaining to the design,
stem cells, cell expansion of undifferentiated and progenitor
operation, siting, transportation, and emergency planning
Graduate Programs
cells, differentiation regulation, and control/engineering of
of both chemical and nuclear materials are studied. Top-
stem cell renewal and differentiation in vitro.
ics include probability and reliability concepts, failure data
analysis, FMEA (Failure Modes and Effects Analysis), fault- Betenbaugh, Konstantopoulos
tree and event-tree techniques, human factors and human
545.603 Colloids and Nanoparticles
error models, multi-objective risk assessment, optimization
and display of information, safety goals, ethics, perceptual This course explains the fundamental principles related to
risk, reliability assurance and maintenance, cost-benefit and interactions, dynamics, and structure in colloidal, nanopar-
analysis for safety improvements, accident mitigation, and ticle, and interfacial systems. Concepts covered include
research priority setting. Also, radiological and toxicological hydrodynamics, Brownian motion, diffusion, sedimentation,
aspects of consequence and modeling for estimating environ- electrophoresis, colloidal and surface forces, polymeric forces,
mental and public health impacts are reviewed. aggregation, deposition, and experimental methods. Modern
topics related to colloids in nano-science and technology will
Staff be discussed throughout the course with frequent references
to recent literature.
545.449 Statistical Design of Experiments
Bevan
This course introduces the basic concepts which underlie
modern statistically designed experimental programs. These 545.604 Therapeutic and Diagnostic Colloids
programs typically test many variables simultaneously and
The inefficient or inappropriate transport of particles in com-
are very efficient tools for developing empirical mathemati-
plex biological fluids in the body currently limits the effec-
cal models, which accurately describe physical and chemical
tiveness of nanoparticle-based strategies aimed at providing
processes. They are readily applied to production plant, pilot
a variety of breakthroughs in medicine, from highly targeted
plant, and laboratory systems and should be a part of every
drug and gene delivery systems to improved particles for
practicing engineer’s repertoire. Topics covered include fun-
advanced imaging and diagnostics. Many bodily fluids serve
damental statistics; the statistical basis for recognizing real
as barriers to particle transport to desired locations, and some
effects in noisy data; statistical tests and reference distribu-
are microporous, highly viscous and/or elastic in nature. This
tions; analysis of variance; construction, application, and
course seeks to provide a fundamental understanding of the
analysis of factorial and fractional factorial designs; screen-
phenomena, including fluid micro-, meso- and macrorhe-
ing design; response surface and optimization methods; and
ology, which govern nano- and microparticle transport in
application to plant operations.
important biological fluids, including the blood, airways,
Staff mucus, and living cells. A comparison of macroscopic and
microscopic particle transport behavior, including compari-
545.475 Spectroscopic and Analytical Methods sons of ensemble-average transport behavior and individual
This is an advanced course in characterization of macromol- particle behavior is a common thread that runs through-
ecules using optical, thermal, and mass spectrometric tech- out the course. The importance of particle physicochemical
niques. Microscopy and surface analysis methods will also be properties in achieving desired particle transport through
explored. The use of each method will be discussed in terms biological barriers to desired sites of action will be addressed.
of the design, construction, and operation of the instrumen- The course will include a case study involving the design
tation. This will be followed by application of the method to criteria of efficient synthetic systems for gene delivery in the
problems in macromolecular characterization. lung airways.
Staff Wirtz
545.602 Cellular and Molecular Biotechnology of 545.610 Fundamentals of Membrane Science for
Mammalian Systems Filtration Applications
This course covers molecular biology techniques, includ- This course focuses on the principles underlying the forma-
ing DNA, RNA, and proteins; control of gene expression; tion of micro-to-nanostructured membranes applied in a
microarray technology and proteomics; cell-cell signaling and range of modern filtration technologies, such as microfil-
63
tration, ultrafiltration, nanofiltration, reverse osmosis, per- 545.615 Interfacial Science with Applications to
vaporation, gas separation, electrodialysis, hemodialysis, fuel Nanoscale Systems
cells, drug delivery, tissue engineering, and sensors. Polymeric Nanostructured materials intrinsically possess large surface
membranes prepared by phase separation will be examined in area (interface area) to volume ratios. It is this large interfacial
detail, while interfacial polymerization and sol-gel processing area that gives rise to many of the amazing properties and
to prepare thin film composites and ceramic membranes,
technologies associated with nanotechnology. In this class,
respectively, will also be studied. The first part of the course
we will examine how the properties of surfaces, interfaces,
will discuss how concepts from thermodynamics, multicom-
and nanoscale features differ from their macroscopic behav-
ponent diffusion, and fluid/solid mechanics are applied to
ior. We will compare and contrast fluid-fluid interfaces with
membrane formation theory. The second part will present
solid-fluid and solid-solid interfaces, discussing fundamental
Graduate Programs
membrane transport theory, and demonstrate how engineer-

interfacial physics and chemistry, as well as touching on state-
ing principles are applied to the various filtration applications
of-the-art technologies.
and the design of modules.
Prerequisites: Graduate Thermodynamics and Transport Frechette
Phenomena are recommended. Programming experience
(MATLAB/Mathematica). 545.626 Introduction to Biomacromolecules
Prakash This course introduces modern concepts of polymer physics

to describe the conformation and dynamics of biological
545.612 Interfacial Phenomena in Nanostructure
macromolecules such as filamentous actin, microtubule, and
Materials nucleic acids. We will introduce scattering techniques, micro-
manipulation techniques, as well as theory applied to the
All properties of materials change when encountered or fabri- study of polymers for tissue engineering and drug delivery
cated with nanoscale structure. In this class, we will examine applications.
how the properties of nanostructured materials differ from
their macroscopic behavior, primarily due to the presence Wirtz
of large interfacial areas relative to the volume scale. Gen-
eral topics include the structure of nanostructured materials 545.630 Thermodynamics and Statistical Mechanics
(characterization and microscopy), thermodynamics (effects We will develop equilibrium thermodynamics and statistical
of high curvatures and surface elasticity), kinetics and phase mechanics from the unified perspective of entropy maximi-
transformations (diffusion and morphological stability), and zation subject to constraints. After a brief review of classical
electronic properties (quantum confinement and effects of thermodynamics, we will undertake the study of statistical
dimensionality). mechanics leading up to the study of liquids, especially liquid
Note: This is a course of the Whiting School’s Department water, and of the hydration of (bio)molecules. We will show
of Chemical and Biomolecular Engineering. how hydration of solutes is conceptually simple when viewed
Staff on the basis of quasi-chemical generalizations of the potential
distribution theorem. We will highlight how the quasi-chem-
ical generalizations readily allow one to include quantum
545.614 Computational Protein Structure
chemical-level of description in the statistical mechanics of
Prediction and Design
biologically interesting processes. If time permits, we will also
The prediction of protein structure from the amino acid touch on modern developments in statistical mechanics that
sequence has been a grand challenge problem for over 50 years. connect non-equilibrium work to equilibrium free energies.
With recent progress in research, it is now possible to blindly
predict many protein structures and even to design new struc- Asthagiri
tures from scratch. This class will introduce the fundamental
concepts in protein structure, biophysics, optimization, and 545.637 Molecular Evolution of Biotechnology
informatics that have enabled the breakthroughs in computa- One of the most promising strategies for successfully design-
tional structure prediction and design. Problems covered will ing complex biomolecular functions is to exploit nature’s
include protein folding and docking, design of ligand-binding principles of evolution. This course provides an overview of
sites, design of turns and folds, and design of protein inter- the basics of molecular evolution as well as its experimental
faces. Class will consist of lectures and hands-on computer implementation. Current research problems in evolution-
workshops. Students will learn to use molecular visualization based biomolecular engineering will be used to illustrate
tools and write programs with the PyRosetta protein structure principles in the design of biomolecules (i.e., protein engi-
software suite, including a computational project. neering, RNA/DNA engineering), genetic circuits, and com-
Note: Programming experience is helpful but not required. plex biological systems including cells.
Gray Ostermeier
64
545.640 Micro and Nanotechnology heterogeneous catalytic reaction kinetics, model discrimina-
Micro/nanotechnology is the field of fabrication, characterization and parameter estimation. Other topics include coupled
tion, and manipulation of extremely small objects (dimensions heterogeneous reaction and transport; generalized moduli
on the micron to nanometer length scale). Microscale objects, catalyst deactivation models; batch reactors, CSTRs, and
because of their small size, are expected to be at the frontier of PFRs; fixed bed reactors including stability criteria and mul-
technological innovation for the next decade. This course will tibed optimization; residence time distributions and non-ide-
include a description of the materials used in microtechnology, al reactor models; and fluidized bed and multiphase reactors.
methods employed to fabricate nanoscale objects, techniques Staff
involved in characterizing and exploiting the properties of
small structures, and examples of how this technology is revo- 545.652 Fundamentals of Biotransport Phenomena
Graduate Programs
lutionizing the areas of electronics and medicine. This lecture course introduces students to the application of
Note: This course is cross-listed with 540.440. engineering fundamentals from transport and kinetic pro-
Gracias cesses to vascular biology and medicine. The first half of the
course addresses the derivation of the governing equations
545.642 Advanced Chemical Kinetics and for Newtonian fluids and their solution in the creeping flow
Reactor Design limit. The second half of the course considers how these con-
This course covers complex reaction networks, Wei-Prat- cepts can be used to understand the behavior of a deformable
er analysis, and the Himmelblau-Jones-Bischoff method. cell near planar surfaces.
Detailed coverage is provided of Hougen-Watson models for Note: Undergraduate Transport Phenomena preferred.
65
Civil Engineering
Civil Engineering ocean engineering, and general civil engineering. Students

may add breadth to their program by selecting three of their
The civil engineering profession is dedicated to developing elective courses from other offerings of the Whiting School
and applying scientific and technological knowledge to serve of Engineering.
the needs of our society. Buildings, power plants, roadways, Ten one-term courses, approved by the faculty advisor,
bridges, water supply systems, wastewater systems, and ocean must be completed within a period of five years. At least
and estuarine structures are all part of the infrastructure of seven of the courses must be in civil engineering; however,
society that comes under the purview of the civil engineering appropriate courses from related or supporting fields are
discipline. Increasingly, civil engineers are also involved in the allowed with prior approval of the program chair. Up to two
development of less traditional structures and systems, such of the 10 required courses may be taken in research. Courses
Graduate Programs
as mechanical prostheses and space vehicles. In addition, the in the program must be at the 400-level or above. Unless
scope of expertise of the modern civil engineer must include prior approval is obtained from the program chair, at least
a concern for environmental, social, and economic issues. five of the courses in the program must be 600-level or above.
Graduate courses in the focus areas of structural engineering, Please refer to the course schedule published each
geotechnical engineering, and ocean engineering are offered term for exact dates, times, locations, fees, and instructors.
in the Master of Civil Engineering program. Additional Courses numbered 600-level and above are open only to
courses are available in the areas of mechanics, probabilis- those students who are admitted to graduate study and to
tic methods, mathematics, environmental engineering, and undergraduates who have satisfactorily completed appropri-
other associated areas of technology. ate prerequisites.
Students may choose to specialize in one of the three
focus areas (sample selections of courses in these areas are list-
Core, Concentrations, and Electives
The 10-course MCE program consists of two parts: 1) the
ed below) or in the general civil engineering area by selecting
core of the program, consisting of two civil engineering
courses from any of the three focus areas and other approved
courses and one course in applied mathematics, and 2) elec-
courses listed in this catalog. With prior approval of the
tives, consisting of seven courses. Sample selections of courses
program chair, students may add breadth to their program
in the four concentrations are presented below. Additional
by selecting three of their electives from other offerings of the
civil engineering courses are listed in this catalog. While some
Whiting School of Engineering.
of these courses are offered in late afternoons and evenings,
The Department of Civil Engineering maintains fully
the remaining courses are offered during the day. Most 600-
equipped laboratories for structures and structural dynamics,
and 700-level courses are offered on a two-year cycle.
soil mechanics, fluid mechanics, and water-wave mechanics
with supporting computational facilities. These laboratories Course Descriptions
are available for both demonstrations and independent study. Please refer to the Course Schedule published each term for
exact dates, times, locations, fees, and instructors. Courses
Program Committee
numbered 600-level and above are open only to those stu-
Rachel Sangree, Program Chair dents who are admitted to graduate study and to under-
Lecturer, Civil Engineering graduates who have satisfactorily completed appropriate
Whiting School of Engineering prerequisites.
Robert A. Dalrymple Required Core
Professor, Civil Engineering
565.729 Structural Mechanics
Benjamin Schafer One of the Following:
Department Chair, Civil Engineering 535.441 Mathematical Methods for Engineers or
Whiting School of Engineering 615.441 Mathematical Methods for Physics and
Engineering
Applicants must meet the general requirements for admission Electives
to graduate study outlined in this catalog. Each applicant Sample Structural Engineering Electives
must have a degree in civil engineering or an appropriate
565.430 Structural Design with Timber, Masonry,
related field, which provides the necessary preparation for
and Other Materials
graduate-level courses. All admissions decisions are made by
565.605 Advanced Reinforced Concrete Design
the program committee on an individual basis.
565.620 Advanced Steel Design
Course Requirements 565.630 Prestressed Concrete Design
The Master of Civil Engineering program emphasizes four 565.730 Finite Element Methods
focus areas: structural engineering, geotechnical engineering, 565.784 Bridge Design
66
Civil Engineering
Sample Geotechnical Engineering Electives 565.650 Port and Harbor Engineering

565.625 Advanced Foundation Design 565.745 Retaining Structures and Slope Stability
565.635 Ground Improvement Methods 565.780 Coastal Engineering
565.645 Marine Geotechnical Engineering 565.781 Introduction to Water Wave Mechanics
565.732 Numerical Methods in Geomechanics 565.782 Advanced Ocean Hydrodynamics
565.742 Soil Dynamics
565.745 Retaining Structures and Slope Stability General Civil Engineering Electives
565.770 Fundamentals of Soil Behavior Any seven courses, including at least four civil engineering
courses listed in this catalog.
Sample Ocean Engineering Electives
Graduate Programs
565.625 Advanced Foundation Design
565.645 Marine Geotechnical Engineering
Course Descriptions
565.430 Structural Design with Timber, Masonry, 565.620 Advanced Steel Design
and Other Materials This course examines advanced designs of structural steel build-
This course offers a review of the current requirements and ing, including consideration of hot-rolled and cold-formed
techniques for the design of modern structures using materi- steel shapes and overall concepts of the structural system.
als such as engineered brick and concrete masonry, timber, Prerequisite: 565.125 Structural Design I or 560.320 Steel
aluminum, and plastics. Relevant design specifications and Structures.
criteria are also included. Malushte
Prerequisites: 565.105 Theory of Structures I or 560.301 The- 565.625 Advanced Foundation Design
ory of Structures. In addition, one previous design course is This course covers performance requirements and review of
preferred. soil mechanics; laboratory testing, subsurface investigation,
Sangree and in situ testing; bearing capacity and settlements of shal-
low foundations; design of spread footings and mat foun-
565.475 Advanced Soil Mechanics dations; axial capacity of deep foundations; settlements of
deep foundations; lateral capacity of deep foundations; weak,
This course discusses the difference between soils and other compressible, and expansible soils; earth pressure theories;
materials; stresses in soils due to structural foundations; elas- and cantilever and sheet-pile retaining structures.
tic, consolidation, and secondary consolidation settlements Prerequisite: 565.475 Advanced Soil Mechanics.
of footings; shear strength and stress-strain behavior of clays
Staff
and sands; approximate nonlinear elastic, Mohr-Coulomb,
Ramberg-Osgood, and Hyperbolic stress-strain models for 565.630 Prestressed Concrete Design
soils; nonlinear Winkler foundation analysis of piles, pile Topics include prestressed concrete materials, prestressing
groups, and drilled shafts due to vertical and horizontal loads; systems, and loss of prestress; analysis and design of section
and foundation spring constraints for superstructure analysis. for flexure, shear, torsion, and compression; and consider-
Prerequisite: 560.305 or equivalent. ation of partial prestress, composite sections, and slabs.
Prerequisite: 565.126 Structural Design II or 560.325 Con-
Anandarajah crete Structures.
Taavoni
565.605 Advanced Reinforced Concrete Design
565.635 Ground Improvement Methods
This intensive course covers reinforced concrete materials and
specifications and includes the following topics: conception, This course addresses the selection, cost, design, construction,
analysis, and design of continuous beams and frames; build- and monitoring of ground improvement methods for prob-
ing; bridges and shells; elements theory, with emphasis on the lematic soils and rock. Ground improvement methods cov-
ered include wick drains, micropiles, lightweight fill materials,
ultimate strength method; precast and prestressed concrete;
soil nailing, mechanically stabilized slopes and walls, grouting,
and special topics.
stone columns, dynamic compaction, and soil mixing.
Prerequisite: 565.126 Structural Design II or 560.325 Con- Prerequisites: 560.330 Foundation Design and 560.475
crete Structures. Advanced Soil Mechanics.
Taavoni Staff
67
Civil Engineering
565.645 Marine Geotechnical Engineering addressed. The key topics include relationships between
This course introduces students to soil mechanics in the strong, weak, and variational statements of BVPs, weighted
marine environment. Topics covered include the nature of residual methods with an emphasis on the Galerkin method,
marine sediments, soil behavior due to cyclic loading, marine specialization of Galerkin approximations of weak statements
geotechnical investigations, shallow foundations and dead- and Ritz approximations of variational statements to obtain
weight anchors, pile foundations and anchors, penetration and finite element formulations, specific element formulations,
breakout of objects on the seafloor, marine slope stability, soft convergence properties, solutions of linear systems of equa-
ground improvement, marine dredging, and project planning. tions, and time-dependent problems.
Prerequisite: 565.121 Soil Mechanics or 560.305 Soil Staff
Mechanics.
565.732 Numerical Methods in Geomechanics
Graduate Programs
Hudson
This course covers finite element modeling of geomechanics
565.650 Port and Harbor Engineering problems, including seepage problems, elastic and plastic solid
Planning and engineering of ports and harbors has received mechanics problems, and earthquake engineering problems.
renewed worldwide interest as the newest super-large cargo Other course topics include fundamentals of hardening plas-
ships push the envelope for channel depth and berth space. ticity, advanced soil constitutive models, applications of finite
This course covers planning of marine terminals and small- element method to the analysis of slopes, seepage through
craft harbors, ship berthing and maneuvering considerations, soils, sheet-pile walls, piles, earthquake liquefaction problems,
port navigation, marine structures, inland navigation, marine and earthquake soil structure interaction problems.
construction planning, sediment management, and port eco- Prerequisite: Background in finite element analysis or permis-
nomics. A field trip to the Port of Baltimore provides practical sion of instructor.
application of course material and shows students firsthand Anandarajah
the unique challenges of engineering on the waterfront.
565.742 Soil Dynamics
Hudson
This course provides a study of soil behavior under dynamic
565.670 Coastal Structures loading conditions, including wave propagation and attenu-
This course covers the practical design and analysis of sea- ation, field and laboratory techniques for determining
walls, breakwaters, groins, and jetties. Topics include wave dynamic soil properties and cyclic strength, cyclic stress strain
forces, sediment transport, and coastal zone planning. behavior of soils, liquefaction and evaluation of liquefaction
susceptibility, nondestructive evaluation of foundation sys-
Prerequisite: 560.780 Coastal Engineering or 560.781 Intro-
tems, and foundation design for vibratory loadings.
duction to Water Waves.
Prerequisite: 560.305 Soil Mechanics or equivalent.
Hudson
Staff
565.675 Hydrodynamics of Estuaries
565.745 Retaining Structures and Slope Stability
Topics applied to estuaries include tides, shallow water waves,
dispersion, sedimentation, salinity stratification and mixing, Topics for this course include earth pressure theories; design
pollution, and flushing—with a particular emphasis on the and behavior of rigid, flexible, braced, tied-back, slurry, and
dynamics of the Chesapeake Bay. reinforced soil structures; stability of excavation, cut, and
natural slopes; methods of slope stability analysis; effects of
Prerequisite: 535.119 Fluid Mechanics or equivalent.
water forces; shear strength selection for analysis; and stability
Staff and seepage in embankment dams.
565.729 Structural Mechanics Prerequisite: 560.305 Soil Mechanics or equivalent.
This course presents basic solid mechanics for structural Staff
engineers, including stress, strain, and constitutive laws; lin-
565.752 Structural Dynamics
ear elasticity and visco-elasticity; introduction to nonlinear
This course provides a brief review of rigid-body dynam-
mechanics; static, dynamic, and thermal stresses; special-
ics, Lagrange’s equations and Hamilton’s principle, free and
ization of theory to one- and two-dimensional cases; plane
deterministic forced vibration of undamped and damped
stress and plane strain, rods, and beams; work and energy
single- and multi-degree of freedom systems, vibration of
principles; and variational formulations.
continuous systems, approximate methods of analysis, and
Staff introduction to random vibration of linear systems.
565.730 Finite Element Methods Prerequisite: Permission of instructor required.
The basic concepts of the FEM are presented for one-, two-, Corequisite: 560.445 Advanced Structural Analysis or
and three-dimensional boundary value problems (BVPs). 560.455 Structural Mechanics.
Problems from heat conduction and solid mechanics are Staff
68
Civil Engineering
565.756 Earthquake Engineering 565.780 Coastal Engineering

Topics for this course include plate tectonics, seismicity of the This course provides an overview of coastal processes and
earth, and engineering seismology—including quantification their influence on engineering at the shoreline, including
and classification of earthquake ground motions, dynamics waves and currents, equilibrium beach profiles, littoral trans-
of structures subjected to earthquake loads, design spectra, port, shoreline modeling, and the behavior of tidal inlets.
building code provisions, design concepts and detailing, soil- The impact of structures on the coastline is discussed as well.
structure interaction, and response of special structures. Dalrymple
Corequisite: 565.752 Structural Dynamics.
Malushte 565.781 Introduction to Water Wave Mechanics
The theories governing water waves are discussed. Linear
Graduate Programs
565.760 Structural Stability wave will be explored in detail, and aspects of nonlinear
Topics covered by this course include concepts of stability waves will also be presented.
of equilibrium; stability criteria; work, energy, and varia- Prerequisite: 535.119 Fluid Mechanics or equivalent.
tional methods; elastic buckling of columns, beams, frames, Dalrymple
and plates, and an introduction to inelastic and dynamic
buckling. 565.782 Advanced Ocean Hydrodynamics
Prerequisite: 560.445 Advanced Structural Analysis; 560.455 This course explains the fundamentals of fluid mechanics in
Structural Mechanics, or equivalent. the context of naval architecture and ocean/science engineer-
Staff ing, with an emphasis on topics selected from potential flow,
added mass, model testing, lifting surfaces, and others.
565.766 Earthquake Engineering II Prerequisite: 535.119 Fluid Mechanics or equivalent.
This course teaches the principles of seismic resistant design Shen
in terms of importance of ductile behavior of materials,
members, and structural systems (with emphasis on the seis- 565.784 Bridge Design
mic “fuse” concept). Seismic design practice for steel and Topics covered by this course include the history, aesthet-
concrete structures per the current U.S. codes will be covered ics, and classification of bridges, along with the design and
for structural systems that include steel moment frames, steel engineering of modern steel and concrete highway bridges.
braced frames, concrete moment frames, concrete shear wall Staff
systems, buckling restrained braced frames, and others.
Prerequisite: 565.756 Earthquake Engineering. 565.800 Independent Study in Civil Engineering
Malushte Permission of instructor required.
Staff
565.770 Fundamentals of Soil Behavior
This course examines microstructural aspects of geotechnical 565.801 Independent Study in Civil Engineering
behavior of clays and sands; influence of structure, fabric, and Permission of instructor required.
compositional variables on geotechnical properties of soils; Staff
fundamentals of overconsolidation, cohesion, friction, and
sensitivity; laboratory stress-strain and shear strength behav-
ior of clays and sands; critical state theory for clays; factors
influencing permeability of soils; anisotropy and geotechnical
properties of soils; and influence of pollutants on mechanical
properties of clays.
Prerequisite: 560.305 Soil Mechanics.
Anandarajah
69
Computer Science
Computer Science Admission Requirements

Applicants must have received a grade of A or B in each of
The proliferation of computers and the expanding scope of the prerequisite undergraduate computer science courses.
information technology have affected virtually every aspect Applicants must meet the general requirements for admis-
of human society. As a discipline, computer science is con- sion to a graduate program, as stated in this catalog. In addi-
cerned with the theory, analysis, design, and implementation tion, computer science master’s degree candidates must have
of processes that describe and transform information. With taken one year of calculus; a course in programming using
roots in mathematics and engineering, computer science uses a modern programming language such as Java or C++; a
formal techniques and methodologies of abstraction to create course in data structures; a course in computer organization;
models that can be automated to solve real-world problems. and a mathematics course beyond calculus (e.g., discrete
Graduate Programs
The Master of Science in Computer Science program mathematics, linear algebra, or differential equations). This
is designed to appeal to a broad range of individuals. The is summarized below:
program balances theory with practice, offers an extensive set
of traditional and state-of-the-art courses, and provides the Computer Science Courses:
necessary flexibility to accommodate students with various
A. Introduction to Programming Using Java or
backgrounds. As a result, the program will appeal to com-
puter professionals with undergraduate degrees in computer C++—one term
science seeking to broaden or deepen their understanding of B. Data Structures—one term
the discipline as well as to scientists and engineers who wish C. Computer Organization—one term
to gain deeper insights into the field of computing.
Courses are offered across a wide variety of topic areas Mathematics Courses:
including distributed computing, software engineering, A. One year of calculus—2 semesters or 3 quarters
information assurance, data communications and network- B. Additional mathematics course beyond calculus—
ing, bioinformatics, database systems, artificial intelligence, one term
human-computer interaction, systems, and theory. Research
and development interests of the faculty span the entire spec- Applicants who have not taken the prerequisite undergradu-
trum of computer science. ate courses may satisfy admission requirements by complet-
Students may take courses at the Applied Physics Labo- ing the specified courses with grades of A or B. The program
ratory, the Montgomery County Campus, the Dorsey Cen- offers the following undergraduate courses, which may be
ter, and online. Extensive computing facilities are available taken as needed to satisfy the computer science prerequi-
and can be reached from any of the sites or from home. A sites and the requirement for a mathematics course beyond
variety of software systems, applications, development tools, calculus:
and specialized lab facilities are also supported. 605.201 Introduction to Programming Using Java
605.202 Data Structures
Program Committee
605.203 Discrete Mathematics
Thomas A. Longstaff, Program Chair 605.204 Computer Organization
Senior Professional Staff
Applied Physics Laboratory Telecommunications and Networking Option
J. Miller Whisnant, Interim Program Vice Chair Computer science students may elect a telecommunications
Principal Professional Staff and networking option by taking seven courses in telecom-
Applied Physics Laboratory munications and networking from the computer science and
Robert S. Grossman, Program Vice Chair Emeritus electrical and computer engineering programs. A maximum
Principal Professional Staff (ret.) of three of those courses can be from the electrical and com-
Applied Physics Laboratory puter engineering area. Students are strongly encouraged to
take courses from both the computer science and electrical
Eleanor Boyle Chlan, Associate Program Chair
and computer engineering areas. Students lacking an electri-
Senior Lecturer in Computer Science
cal engineering background or equivalent must take 525.202
Signals and Systems as an undergraduate prerequisite for tak-
John A. Piorkowski ing electrical and computer engineering telecommunications
Principal Professional Staff and networking courses. The computer science and electri-
Applied Physics Laboratory cal and computer engineering telecommunications and net-
Michael Smeltzer working courses for the telecommunications and networking
Senior Professional Staff option are listed on the telecommunications and networking
Applied Physics Laboratory option page.
70
Computer Science
Bioinformatics vice chair. Students who take electives from other programs
Computer science students may pursue a Master of Science must meet the specific course and program requirements
in Computer Science with a concentration in bioinformatics listed for each course. In the event that the student has trans-
or an Advanced Certificate for Post-Master’s Study in Bio- fer courses accepted, they will be considered electives.
informatics. The advanced certificate requires that students Graduate students not pursuing a master’s degree in
hold a master of science in computer science or a closely computer science should consult with their advisor/s or with
related discipline, such as electrical and computer engineer- the computer science special student advisor to determine
ing or applied and computational mathematics. The cer- what courses must be successfully completed before 400- or
tificate requires six courses, four of which must be graduate 700-level computer science courses may be taken. It should
courses selected from the computer science bioinformatics be noted that 700-level courses are open only to students who
Graduate Programs
concentration area. For both the concentration and certifi- have been admitted with graduate status.
cate, students may take up to two electives from outside com- Please refer to the course schedule each term for dates,
puter science. While these electives will typically be selected times, locations, fees, and instructors.
from programs in the Whiting School of Engineering, advi-
sors can approve bioinformatics courses from other divisions Computer Science—Online
of the university. Students who take electives from other pro- Students may complete the Master of Science in Computer
grams must meet the requirements for the selected courses. Science online, and all students may take advantage of online
Before taking any graduate computer science bioinformatics offerings. While not all courses are available online, a com-
courses, students must have taken 605.205 Molecular Biol- plete program is offered and additional online courses are
ogy for Computer Scientists, or an equivalent course, and continually being developed. This increases the flexibility
received a grade of A or B. of course offerings for students wishing to pursue studies in
Students interested in a Master of Science in Bioinfor- either the face-to-face or online format, or a combination
matics with a focus on the interpretation of complex bio- of both.
logical information and the analysis of sequence data using Course content is identical to that in the face-to-face
sophisticated bioinformatics software may be interested in the offerings but available in a paced, asynchronous mode over
joint degree program offered by the Whiting School of Engi- the Internet. Recorded lectures with associated multi-media
neering and the Zanvyl Krieger School of Arts and Sciences. content are augmented with online discussions and week-
ly synchronous office hours. Prospective and current stu-
Advanced Certificate for Post-Master’s Study in dents should consult the EP website for the current online
Computer Science course offerings, course schedules, and procedures for online
Applicants who have already completed a master’s degree programs.
in computer science or a related discipline are eligible to
apply for an Advanced Certificate of Post Master’s Study in Foundation Courses
Computer Science. Six one-term courses must be completed All students working toward a master’s degree in computer
with grades of A or B within three years. At least five of the science are required to take the following three graduate
six courses must be computer science courses and at least two foundation courses before taking other graduate courses:
of the computer science courses must be at the 700 level. 605.401 Foundations of Software Engineering
Students are allowed to take one elective course, subject to 605.411 Foundations of Computer Architecture
advisor approval. 605.421 Foundations of Algorithms
Course Requirements for Master’s Degree Foundation Course Waivers

Ten courses, approved by an advisor, must be completed One or more foundation courses can be waived if a student
within five years. At least eight courses must be from the has received an A or B in equivalent courses. In this case, the
computer science curriculum, which includes computer sci- student may replace the waived foundation courses with the
ence courses as well as selected courses from information same number of other graduate computer science courses,
assurance and information systems and technology. Three and may take these courses after all remaining foundation
courses must be from the same concentration area and at course requirements have been satisfied.
least two courses must be 700-level. No more than one course
with a grade of C, and no course with a grade lower than C, Graduate Courses by Concentration Areas
may be counted toward the degree. The computer science concentration areas including all appli-
While students often choose 10 courses from computer cable courses from computer science, information assurance,
science, students may take up to two electives from outside and information systems and technology are as follows:
computer science. These may be selected from electrical and
computer engineering, applied and computational math- I. Software Engineering
ematics, and applied physics. Electives from other programs 605.401 Foundations of Software Engineering
require approval of the computer science program chair or 605.402 Software Analysis and Design
71
Computer Science
605.404 Object Oriented Programming with C++ 695.423 Intrusion Detection

605.405 Conceptual Design for High-Performance 695.443 Introduction to Ethical Hacking
Systems 695.701 Cryptology
605.407 Agile Software Development Methods 695.711 Java Security
605.408 Software Project Management 695.712 Authentication Technologies
695.714 Reverse Engineering and Vulnerability
605.702 Service-Oriented Architecture Analysis
605.704 Object-Oriented Analysis and Design
695.721 Network Security
605.705 Software Safety
695.741 Information Assurance Analysis
605.707 Design Patterns
Graduate Programs
695.742 Digital Forensics Technologies and

605.708 Tools and Techniques of Software Project
Techniques
Management
695.791 Information Assurance Architectures and
605.709 Seminar in Software Engineering
Technologies
Analysis V. Database Systems and Knowledge Management
II. Systems 605.441 Principles of Database Systems
605.411 Foundations of Computer Architecture 605.443 The Semantic Web
605.412 Operating Systems 605.444 XML Design Paradigms
605.414 System Development in the UNIX 605.445 Artificial Intelligence
Environment 605.446 Natural Language Processing
605.415 Compiler Design 605.447 Neural Networks
605.416 Multiprocessor Architecture and 605.741 Distributed Database Systems: Cloud
Programming Computing and Data Warehouses
605.713 Robotics 605.744 Information Retrieval
605.715 Software Development for Real-Time
605.745 Reasoning Under Uncertainty
Embedded Systems
605.746 Machine Learning
605.716 Modeling and Simulation of Complex
Systems 605.747 Evolutionary Computation
605.424 Logic: Systems, Semantics, and Models
III. Theory
605.421 Foundations of Algorithms VI. Bioinformatics
605.422 Computational Signal Processing 605.451 Principles of Computational Biology
605.423 Applied Combinatorics and Discrete 605.452 Biological Databases and Database Tools
Mathematics 605.453 Computational Genomics
605.424 Logic: Systems, Semantics, and Models 605.456 Computational Drug Discovery and
605.426 Image Processing Development
605.427 Computational Photography 605.751 Computational Aspects of Molecular
605.721 Design and Analysis of Algorithms Structure
605.722 Computational Complexity 605.754 Analysis of Gene Expression and High-
605.725 Queuing Theory with Applications to Content Biological Data
Computer Science 605.755 Systems Biology
605.727 Computational Geometry 605.759 Independent Project in Bioinformatics
605.728 Quantum Computation
605.443 The Semantic Web
IV. Information Assurance 605.716 Modeling and Simulation of Complex
Systems
695.401 Foundations of Information Assurance
695.411 Embedded Computer Systems— VII. Human-Computer Interaction and Visualization
Vulnerabilities, Intrusions, and Protection
Mechanisms 605.462 Data Visualization
695.421 Public Key Infrastructure and Managing 605.467 Computer Graphics
E-Security 605.767 Applied Computer Graphics
695.422 WWW Security 635.461 Principles of Human-Computer Interaction
72
Computer Science
VIII. Data Communications and Networking 605.778 Voice Over IP

(For the telecommunications and networking options in 600.647 Advanced Topics in Wireless Networks
electrical and computer engineering and computer science,
please see the Telecommunications and Networking page of IX. Enterprise and Web Computing
this catalog.) 605.481 Principles of Enterprise Web Development
605.471 Principles of Data Communications 605.484 Agile Development with Ruby on Rails
Networks 605.486 Mobile Application Development for the
605.472 Computer Network Architectures and Android Platform
Protocols 605.782 Web Application Development with Java
605.473 High-Speed Networking Technologies 605.784 Enterprise Computing with Java
Graduate Programs
605.475 Protocol Design and Simulation 605.785 Web Services with SOAP and REST:
605.477 Internetworking with TCP/IP I Frameworks, Processes, and Applications
605.478 Cellular Communications Systems 605.786 Enterprise System Design and
Implementation
605.771 Wired and Wireless Local and Metropolitan
605.787 Rich Internet Applications with Ajax
Area Networks
635.483 E-Business: Models, Architecture,
605.772 Network Management
Technologies and Infrastructure
605.474 Network Programming
605.775 Optical Networking Technology Special Topics
605.777 Internetworking with TCP/IP II 605.801 Independent Study in Computer Science I
605.802 Independent Study in Computer Science II
Course Descriptions
605.201 Introduction to Programming Using Java 605.203 Discrete Mathematics
This course enables students without a background in soft- This course emphasizes the relationships between certain
ware development to become proficient programmers who are mathematical structures and various topics in computer sci-
prepared for a follow-on course in data structures. The Java ence. Topics include set theory, graphs and trees, algorithms,
language will be used to introduce foundations of structured, propositional calculus, logic and induction, functions, rela-
procedural, and object-oriented programming. Topics include tional algebra, and matrix algebra. (Not for graduate credit)
I/O, data types, operators, operands, expressions, conditional Prerequisites: Calculus is recommended.
statements, iteration, recursion, arrays, functions, parameter Note: A mathematics course beyond one year of calculus is
passing, and returning values. Students will also be introduced needed for admission to the graduate computer science pro-
to classes, objects, object references, inheritance, polymor- gram. Students who lack this prerequisite can fulfill admis-
phism, and exception handling. Additional topics include file sion requirements by completing this course with a grade of
I/O, searching, sorting, Java Collections, and an introduc- A or B.
tion to Applets. Students will complete several programming
Chlan
assignments to develop their problem-solving skills and to
gain experience in detecting and correcting software errors. 605.204 Computer Organization
(Not for graduate credit) This course examines how a computer operates at the
Prerequisites: One year of college mathematics. machine level. Students will develop an understanding of
Chittargi, Ferguson, Shyamsunder, Smith the hardware/software interface by studying the design and
operation of computing system components. In addition,
605.202 Data Structures
students will program at the assembly language level to
This course investigates abstract data types (ADTs), recursion,
understand internal system functionality. Finally, students
algorithms for searching and sorting, and basic algorithm
will become familiar with the machine representations of
analysis. ADTs to be covered include lists, stacks, queues, pri-
programs and data as well as the influence of the underlying
ority queues, trees, sets, and dictionaries. The emphasis is on
hardware system on the design of systems software such as
the trade-offs associated with implementing alternative data
operating systems, compilers, assemblers, and linkers and
structures for these ADTs. There will be four or five substan-
loaders. (Not for graduate credit)
tial Java programming assignments. (Not for graduate credit)
Prerequisite: 605.202 Data Structures is recommended.
Prerequisites: One year of college mathematics. 605.201
Introduction to Programming Using Java or equivalent. Kann, Malcom, Schappelle, Snyder, Whisnant
Chlan, Resch, Tjaden
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Computer Science
605.205 Molecular Biology for Computer Scientists Prerequisite: Knowledge of Java or C.

This course is designed for students who seek to take bio- Boon, Demasco, Ferguson, Pierson, Tjaden
informatics courses but lack prerequisites in the biological
sciences. The course covers essential aspects of biochemistry, 605.405 Conceptual Design for High-Performance
cell biology, and molecular biology. Topics include the chemi- Systems
cal foundations of life; cell organization and function; the Recent data indicates that 80 percent of all new products
structure and function of macromolecules; gene expression— or services in the U.S. fail within six months or fall signifi-
transcription, translation and regulation; biomembranes and cantly short of forecasted success. In the software industry,
transmembrane transport; metabolism and cellular energetics; the average failure rate can be even higher, often entailing
and signal transduction. The application of foundational con- massive losses for both the developer, due to disappointing
Graduate Programs
cepts in developmental biology, neurobiology, immunology, sales or excessive maintenance costs, and the user, due to
and cancer biology is also introduced. (Not for graduate credit) learning difficulties and other performance problems. This
Kumar course analyzes a set of issues critical to conceiving and execut-
ing a successful software product, with emphasis on complex
605.401 Foundations of Software Engineering dynamic applications. Topics are focused on three generic
Fundamental software engineering techniques and meth- issues: 1) how to collect, organize, and formulate require-
odologies commonly used during software development are ments encompassing both software and user performance; 2)
studied. Topics include various life cycle models, project how to define product-user interactions and design interfaces
planning and estimation, requirements analysis, program to satisfy performance requirements; and 3) how to assess
design, construction, testing, maintenance and implementa- the extent of requirements satisfaction (usability testing and
tion, software measurement, and software quality. Empha- analysis). In complex dynamic applications, user performance
sized are structured and object-oriented analysis and design is particularly sensitive to design shortcomings. Discussion
techniques, use of process and data models, modular prin- of such applications will concentrate on models of situation
ciples of software design, and a systematic approach to testing comprehension, image understanding, decision making under
and debugging. The importance of problem specification, uncertainty and other aspects of user performance that need
programming style, periodic reviews, documentation, thor- to be considered to recognize and avoid typical design errors.
ough testing, and ease of maintenance are covered. Yufik
Ligozio, Lindberg, Schappelle, Wichmann, Yufik
605.407 Agile Software Development Methods
605.402 Software Analysis and Design This course emphasizes the quick realization of system value
This course emphasizes the concepts, methods, techniques, through disciplined, iterative and incremental software devel-
and tools for analyzing and designing complex software sys- opment techniques and the elimination of wasteful prac-
tems. Topics include design principles and strategies, soft- tices. Students will study the full spectrum of Agile Methods,
ware requirements engineering and analysis, design models, including Scrum, Extreme Programming, Lean, Crystal
software architectural design, architectural styles, qualities, Methods, Dynamic Systems Development Method, Feature-
attributes, notations, documentation, architectural trade- driven Development, and Kanban. These methods promote
off analysis, formal methods for specification and analysis teamwork, rich concise communication, and the frequent
of software systems, and use of patterns in software design. delivery of running, tested systems containing the highest
Design for reuse and evolutionary considerations are also priority customer features. Agile methods are contrasted with
discussed. Students will gain critical insights in current best common workplace practices and traditional methods such
practices and be able to evaluate the contribution of popular as Waterfall, CMMI, PMI/PMBOK, and RUP. Examples
methodologies to requirements analysis and software design. of agile adoption in industry are discussed. Additional sub-
Olagbemiro themes in the course will include team dynamics, collabora-
tion, software quality, and metrics for reporting progress.
605.404 Object Oriented Programming with C++ Menner, Olagbemiro
This course provides in-depth coverage of object-oriented
programming principles and techniques using C++. Topics 605.408 Software Project Management
include classes, overloading, data abstraction, information This course describes the key aspects of a software project. It
hiding, encapsulation, inheritance, polymorphism, file pro- begins with the job description of a software manager and
cessing, templates, exceptions, container classes, and low-level then addresses those topics germane to successful software
language features. The course briefly covers the mapping of development management including organizing the software
UML design to C++ implementation and object-oriented development team; interfacing with other engineering organi-
considerations for software design and reuse. The course also zations (systems engineering, quality assurance, configuration
relates C++ to GUI, databases, and real-time programming. management, and test engineering); assessing development
Optional topics include the comparison of C++ with other standards; selecting the best approach and tailoring the pro-
OOP languages and techniques for interfacing C++ with Java. cess model; estimating software cost and schedule; planning
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Computer Science
and documenting the plan; staffing the effort; managing soft- contain multiple programs. Topics include an overview of the
ware cost and schedule during development; risk engineering; UNIX system and its general-purpose tools, advanced make-
and continuous process improvement. Personnel manage- file usage, UNIX system calls, UNIX process management,
ment topics, including performance evaluations, merit plan- threads, and basic and advanced interprocess communica-
ning, skills building, and team building, are also covered. tion. Additional topics include source code configuration
This course introduces software engineers aspiring to become control, Perl, and debugging techniques.
technical team leaders or software project managers to the Prerequisites: Familiarity with UNIX, experience with C++
responsibilities of these roles. For those engineers who have or C.
advanced to a software development leadership position, this
Barrett, Ching, Noble
course offers formal training in software project management.
Graduate Programs
Prerequisite: 3-5 years technical work experience is 605.415 Compiler Design
recommended. This course explores the principles, algorithms, and data
Bowers, Winston structuresinvolved in the design and construction of com-
pilers. Topics include finite-state machines, lexical analysis,
605.411 Foundations of Computer Architecture context-free grammars, push-down parsers, LR and LALR
This course provides a detailed examination of the internal parsers, other parsing techniques, symbol tables, error recov-
structure and operation of modern computer systems. Each ery, and an introduction to intermediate code generation.
of the major system components is investigated including Students are provided a skeleton of a functioning compiler in
the following topics: the design and operation of the ALU, C to which they can add functionality. Several skeletal imple-
FPU, and CPU; microprogrammed vs. hardwired control, mentations in C++ as well as a back-endinterface to Jasmin
pipelining, and RISC vs. CISC machines; the memory sys- are also available. As Jasmin assembles to Java Byte Code, stu-
tem including caches and virtual memory; parallel and vec- dents can develop compilers that target any platform with a
tor processing, multiprocessor systems and interconnection Java Virtual Machine, and by the end of the course, students
networks; superscalar and super-pipelined designs; and bus will have developed a compiler for a subset of C.
structures and the details of low level I/O operation using Ferguson
interrupt mechanisms, device controllers, and DMA. The
impact of each of these topics on system performance is also 605.416 Multiprocessor Architecture and
discussed. The instruction set architectures and hardware Programming
system architectures of different machines are examined and This course addresses how to utilize the increasing hardware
compared. The classical Von Neumann architecture is also capabilities of multiprocessor computer architecture’s high
compared and contrasted with alternative approaches such performance computing platforms for software development.
as data flow machines and neural networks. The famous Moore’s Law is still alive though it is now realized
Beser, Kann, Malcom, Snyder, Whisnant from increasing the number of CPU cores instead of increas-
ing CPU clock speed. This course describes the differences
605.412 Operating Systems between single core and multi-core systems, and addresses
The theory and concepts related to operating system design the impact of these differences in multiprocessor computer
are presented from both developer and user perspectives. architectures and operating systems. Parallel programming
Core concepts covered include process management, memory techniques to increase program performance by leveraging
management, file systems, I/O system management includ- the multiprocessor system, including multi-core architec-
ing device drivers, distributed systems, and multi-user con- tures, will be introduced. Additional topics include program
cepts including protection and security. Process management performance analysis and tuning, task parallelism, synchro-
discussions focus on threads, scheduling, and synchroniza- nization strategies, shared memory access and data structures,
tion. Memory management topics include paging, segmenta- and task partition techniques. The course encourages hands-
tion and virtual memory. Students will examine how these on experience with projects selected by the student.
concepts are realized in several current open-source operat- Zheng
ing systems, including Linux. Students will complete several
assignments that require the design and implementation of 605.421 Foundations of Algorithms
operating system programs using a high-level language. This follow-on course to data structures (e.g., 605.202)
Noble provides a survey of computer algorithms, examines fun-
damental techniques in algorithm design and analysis, and
605.414 System Development in the UNIX develops problem-solving skills required in all programs of
Environment study involving computer science. Topics include advanced
This course describes how to implement software systems in data structures (red-black and 2-3-4 trees, union-find),
a UNIX (POSIX-compliant) operating system environment. recursion and mathematical induction, algorithm analysis
Students will discuss and learn the complexities, method- and computational complexity (recurrence relations, big-O
ologies, and tools in the development of large systems that notation, NP-completeness), sorting and searching, design
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Computer Science
paradigms (divide and conquer, greedy heuristic, dynamic sistent systems, such as may arise in merging disparate data-
programming, amortized analysis), and graph algorithms bases or in combining diagnostic models of related systems.
(depth-first and breadth-first search, connectivity, minimum Waddell
spanning trees, network flow). Advanced topics are selected
from among the following: randomized algorithms, informa- 605.426 Image Processing
tion retrieval, string and pattern matching, and computa- Fundamentals of image processing are covered, with an
tional geometry. emphasis on digital techniques. Topics include digitization,
Prerequisite: 605.202 Data Structures or equivalent. enhancement, segmentation, the Fourier transform, filter-
ing, restoration, reconstruction from projections, and image
Recommended: 605.203 Discrete Mathematics or equivalent.
analysis including computer vision. Concepts are illustrated
Lew, Maurer, Rodriguez, Sadowsky, Sheppard by laboratory sessions in which these techniques are applied
Graduate Programs
to practical situations, including examples from biomedical

605.422 Computational Signal Processing
image processing.
This course introduces computational aspects of signal pro-
Prerequisite: Familiarity with Fourier transforms.
cessing, specifically algorithms for processing digital signals,
methods for the design and analysis of signal processing Byrd
algorithms, architectures for signal processing systems, and 605.427 Computational Photography
areas of application. Topics include signal analysis (signal Computational photography is an emerging research area
definition, time and frequency domains, sampling and digi- at the intersection of computer graphics, image processing,
tizing, noise and error), systems for signal processing (filters and computer vision. As digital cameras become more popu-
and nonfilters, correlation, adaptation), and algorithms and lar and collections of images continue to grow, interest in
architectures (fast Fourier transforms, fast convolution, digi- effective ways to enhance photography and produce more
tal filtering, interpolation and resampling, digital signal pro- realistic images through the use of computational techniques
cessors, function evaluation, and computational complexity). has surged. Computational photography overcomes the limi-
Areas of application include communication systems, speech tations of conventional photography by analyzing, manip-
signal processing, and digital media. ulating, combining, searching, and synthesizing images to
Prerequsite: Knowledge of complex numbers and linear algebra. produce more compelling, rich, and vivid visual representa-
Sadowsky tions of the world. This course will introduce the fundamental
concepts of image processing, computer vision, and com-
605.423 Applied Combinatorics and Discrete puter graphics and their applications to photography. Topics
Mathematics include image formation, filtering, blending, and completion
Combinatorics and discrete mathematics are becoming techniques. In addition, the course will discuss different image
increasingly important fields of mathematics because of their analysis and rendering techniques including texture analysis,
extensive applications in computer science, statistics, opera- morphing, and non-photorealistic rendering.
tions research, and engineering. The purpose of this course is Caban
to teach students to model, analyze, and solve combinatorial
and discrete mathematical problems. Topics include elements 605.441 Principles of Database Systems
of graph theory, the pigeonhole principle, counting methods, This course examines the underlying concepts and theory
generating functions, recurrence relations and their solution, of database management systems. Topics include database
and the inclusion-exclusion formula. Emphasis is on the system architectures, data models, query languages, concep-
application of the methods to problem solving. (This course tual and logical database design, physical organization, and
is the same as 625.417 Applied Combinatorics and Discrete transaction management. The entity-relationship model and
Mathematics.) relational model are investigated in detail, object-oriented
Whisnant databases are introduced, and legacy systems based on the
network and hierarchical models are briefly described. Map-
605.424 Logic: Systems, Semantics, and Models pings from the conceptual level to the logical level, integrity
The use of predicate logic for modeling information systems constraints, dependencies, and normalization are studied as a
is widespread and growing. Knowledge representation, for basis for formal design. Theoretical languages such as the rela-
example, has long been important in artificial intelligence tional algebra and the relational calculus are described, and
applications, and is now emerging as a critical component high-level languages such as SQL and QBE are discussed.
of semantic web applications. Similarly, predicate logic is the An overview of file organization and access methods is pro-
basis for ontologies and inferential knowledge bases. This vided as a basis for discussion of heuristic query optimization
course teaches the fundamentals of propositional and predi- techniques. Finally, transaction processing techniques are
cate logic, with an emphasis on semantics. Modal logic is presented with a specific emphasis on concurrency control
introduced as a tool to manage non-truth-functional systems, and database recovery.
and dynamic logic is introduced to manage potentially incon- Kung, Liu
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Computer Science
605.443 The Semantic Web gain an in-depth understanding of the computational prop-
The Semantic Web is an activity by the WWW Consortium erties of natural languages and the commonly used algo-
to create a large set of XML-based languages, along with rithms for processing linguistic information. The course
information on how various tags relate to real-world objects examines NLP models and algorithms using both the tradi-
and concepts. This course covers Semantic Web technologies, tional symbolic and the more recent statistical approaches. It
including RDF (Resource Description Format--a structure includes treatment of natural languages at the lexical, syntac-
for describing and interchanging metadata on the web) and tic, semantic, and pragmatic levels. The course also covers the
OWL (Web Ontology Language), with domain-specific stan- development of modern NLP systems using statistical and
dards and ontologies (formal specifications of how to represent machine learning techniques.
objects and concepts). Representative applications of RDF, Prerequisite: 605.445 Artificial Intelligence or equivalent.
Graduate Programs
OWL, and ontologies will be discussed. Students will complete Kumar
a Semantic Web project in an application area of interest to
them. Examples will be drawn from several application areas. 605.447 Neural Networks
Prerequisite: 605.444 XML Design Paradigms or equivalent. This course provides an introduction to concepts in neural
Cost networks and connectionist models. Topics include parallel
distributed processing, learning algorithms, and applications.
605.444 XML Design Paradigms Specific networks discussed include Hopfield networks, bidi-
Formerly 635.444 XML: Technology and rectional associative memories, perceptrons, feedforward
Applications. networks with back propagation, and competitive learning
The course explores understanding the tradeoffs among XML networks, including self-organizing and Grossberg networks.
grammars and XML techniques to solve different classes of Software for some networks is provided. (This course is the
problems. Topics include: optimization of XML grammars same as 625.438 Neural Networks.)
for different XML technologies; benefits of using different Prerequisites: Multivariate calculus and linear algebra.
XML schema languages; tradeoffs in using different parsing Fleischer
approaches; benefits of parsing technology vs. XML query;
the role of Web 2.0 to deliver functionality through various 605.451 Principles of Computational Biology
web services approaches; exploiting XML to drive audio, This course is an interdisciplinary introduction to com-
visual, and tactile displays; the role of XML in multiplying putational methods used to solve important problems in
the power of standard web browser technologies; and the DNA and protein sequence analysis. The course focuses on
role of Web 3.0 to deliver Semantic Web functionality. XML algorithms but includes material to provide the necessary
technologies that will be covered include: XML Schema, biological background for science and engineering students.
XPath, XSLT, SAX, DOM, XQuery, SOAP, WSDL, JAX-B, Algorithms to be covered include dynamic programming
JAX-WS, REST, RDF, and OWL. for sequence alignment, such as Smith-Waterman, FASTA,
Prerequisite: 605.481 Principles of Enterprise Web Develop- and BLAST; hidden Markov models, such as the forward,
ment or equivalent Java experience. Viterbi, and expectation maximization algorithms; a range of
Chittargi, Silberberg gene-finding algorithms; phylogenic tree construction; and
clustering algorithms.
605.445 Artificial Intelligence Prerequisites: Familiarity with probability and statistics; work-
The incorporation of advanced techniques in reasoning and ing knowledge of Java, C++, or C; 605.205 Molecular Biol-
problem solving into modern, complex systems has become ogy for Computer Scientists or a course in molecular biology
pervasive. Often, these techniques fall within the realm of arti- and either a course in cell biology or biochemistry.
ficial intelligence. This course focuses on artificial intelligence Przytycka and Rogozin
from an agent perspective, and explores issues of knowledge
representation and reasoning. Students will participate in 605.452 Biological Databases and Database Tools
lectures and discussions on various topics, including heuris- The sequencing of the human genome and intense interest
tic and stochastic search, logical and probabilistic reasoning, in proteomics and molecular structure have resulted in an
planning, learning, and perception. Advanced topics will be explosive need for biological databases. This course surveys a
selected from areas such as robotics, vision, natural language wide range of biological databases and their access tools, and
processing, and philosophy of mind. Students will complete enables students to develop proficiency in their use. Databas-
problem sets and small software projects to gain hands-on es introduced include genome and sequence databases such
experience with the techniques and issues covered. as GenBank and Ensemble, as well as protein databases such
Butcher as PDB and SWISS-PROT. Tools for accessing and manipu-
lating sequence databases such as BLAST, multiple align-
605.446 Natural Language Processing ment, Perl, and gene finding tools are covered. Specialized
This course introduces the fundamental concepts and tech- databases such as KEGG and HapMap are surveyed for their
niques of natural language processing (NLP). Students will design and use. The course also focuses on the design of bio-
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Computer Science
logical databases and examines issues related to heterogeneity, of data. It covers the core topics in data visualization: data
interoperability, complex data structures, object orientation, representation, visualization toolkits, scientific visualization,
and tool integration. Students will create their own small medical visualization, information visualization, flow visual-
database as a course project and will complete homework ization, and volume rendering techniques. The related topics
assignments using biological databases and database tools. of applied human perception and advanced display devices
Prerequisites: 605.205 Molecular Biology for Computer Sci- are also introduced.
entists or equivalent. Prerequisite: Experience with data collection/analysis in data-
Recommended: 605.441 Principles of Database Systems or intensive fields or background in computer graphics.
410.634 Practical Computer Concepts for Bioinformatics. Recommended: 605.467 Computer Graphics .
Hobbs Chlan
Graduate Programs
605.453 Computational Genomics 605.467 Computer Graphics

This course focuses on current problems of computational This course examines the principles of computer graphics,
genomics. Students will use bioinformatics software and with a focus on the mathematics and theory behind 2D
learn the principles underlying a variety of bioinformatics and 3D graphics rendering. Topics include graphics display
algorithms. In addition, students will explore and discuss devices, graphics primitives, 2D and 3D transformations,
bioinformatics research, and develop software tools to solve viewing and projection, color theory, visible surface detection
bioinformatics problems. Topics include analyzing eukary- and hidden surface removal, lighting and shading, and object
otic, bacterial, and viral genes and genomes; finding genes in definition and storage methods. Practical application of these
genomes and identifying their biological functions; predict- concepts is emphasized through laboratory exercises and code
ing regulatory sites; assessing gene and genome evolution; examples. Laboratory exercises use the C++ programming
and analyzing gene expression data. language and OpenGL on a PC.
Prerequisites: 605.205 Molecular Biology for Computer Sci- Prerequisite: Familiarity with linear algebra.
entists or equivalent, and familiarity with probability and Nesbitt
statistics.
Ermolaeva 605.471 Principles of Data Communications Networks
This course provides an introduction to the field of data com-
605.456 Computational Drug Discovery and munications and computer networks. The course covers the
Development principles of data communications, the fundamentals of sig-
Recent advances in bioinformatics and drug discovery plat- naling, basic transmission concepts, transmission media, cir-
forms have brought us significantly closer to the realization cuit control, line sharing techniques, physical and data link
of rational drug design and development. Across the phar- layer protocols, error detection and correction, data compres-
maceutical industry, considerable effort is being invested in sion, network security techniques, common carrier services
developing experimental and translational medicine, and it and data networks, and the mathematical techniques used
is starting to make a significant impact on the drug discovery for network design and performance analysis. Potential top-
process itself. This course examines the major steps of the ics include analog and digital signaling; data encoding and
evolving modern drug discovery platforms, the computa- modulation; Shannon channel capacity; FDM, TDM, and
tional techniques and tools used during each step of rational STDM multiplexing techniques; inverse multiplexing; analog
drug discovery, and how these techniques facilitate the inte- and digital transmission; PCM encoding and T1 transmis-
gration of experimental and translation medicine with the sion circuits; CRC error detection and Hamming and Vit-
discovery/development platforms. The course will build on erbi error correction techniques; Huffman and Lempel-Ziv
concepts from a number of areas including bioinformatics, data compression algorithms; symmetric key and public key
computational genomic/proteomics, in-silico system biology, encryption, authentication and digital signatures, PKI and
computational medicinal chemistry, and pharmaceutical bio- key distribution, secure email and PGP; circuit, packet, and
technology. Topics covered in the course include comparative cell switching techniques; TCP/IP protocols and local area
pharmacogenomics, protein/antibody modeling, interaction networks; network topology optimization algorithms, reliabil-
and regulatory networks, QSAR/pharmacophores, ADME/ ity and availability, and queuing analysis; and circuit costing.
toxicology and clinical biomarkers. Relevant mathematical Boules, Nieporent, Smith
concepts are developed as needed in the course.
Prerequisite: 605.205 Molecular Biology for Computer Sci- 605.472 Computer Network Architectures and
entists, or equivalent. Protocols
Kumar This course provides a detailed examination of the conceptual
framework for modeling communications between processes
605.462 Data Visualization residing on independent hosts, and the rules and procedures
This course explores the underlying theory and practical that mediate the exchange of information between two com-
concepts in creating visual representations of large amounts munication processes. The Open Systems Interconnection
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Computer Science
Reference Model (OSIRM) is presented and compared with inter-process communications comprise both local and dis-
TCP/IP and other network architectures. The service defini- tributed architectures. The distributed communications pro-
tions and protocols for implementing each of the seven layers tocols include those most widely implemented and used: the
of the Reference Model using both OSI and TCP/IP protocols worldwide Internet protocol suite (the Transmission Control
are analyzed in detail. Internetworking among heterogeneous Protocol/Internet Protocol [TCP/IP], and the U.S. govern-
subnets is described in terms of addressing and routing, and ment-mandated International Organization for Standard-
techniques for identifying different protocol suites sent over ization [ISO] protocol suite). Practical skills are developed,
the subnets are explained. The protocol header encoding rules including the ability to implement and configure protocol
are examined, and techniques for parsing protocol headers are servers (daemons) and their clients. Students are expected to
analyzed. The application layer sub-architecture for provid- have working knowledge of UNIX.
Graduate Programs
ing common application services is described, and interoper- Prerequisite: 605.471 Principles of Data Communications
ability techniques for implementing multiprotocol internets Networks, or 605.414 System Development in the UNIX
are presented. Topics include layering, encapsulation, SAPs, Environment.
and PDUs; sliding window protocols, flow and error control;
virtual circuits and datagrams; routing and congestion con- Noble
trol algorithms; internetworking; NSAP and IP addressing
schemes; CLNP, IPv4 and the new IPv6 internet protocols; 605.475 Protocol Design and Simulation
RIP, OSPF, ES-IS, and IS-IS routing protocols; TP4 and TCP This course covers the formal design, specification, and vali-
transport protocols; dialog control, activity management, and dation of computer and network protocols. Design, imple-
the session layer protocol; ASN.1 encoding rules and the pre- mentation, and verification of protocols will be illustrated
sentation layer protocol; application layer structure and the using the latest simulation tools, such as OPNET and NS2.
ACSE, CCR, ROSE and RTSE common application service Protocol examples include the latest wired and wireless net-
elements; OSI VT, FTAM and MOTIS application protocols, works, such as the IEEE 802.X family, as well as protocols in
TCP/IP TELNET, FTP and SMTP application protocols; VoIP, Web 2.0, and network security. The course focuses on
and OSI transitioning tools, multiprotocol networks, and protocol specification, structured protocol design, protocol
encapsulation, tunneling and convergence techniques. models, and protocol validation. Students will gain hands-
Prerequisite: 605.471 Principles of Data Communications on experience using simulation tools to design, validate, and
Networks. assess protocols.
Nieporent Prerequisite: 605.471 Principles of Data Communications
Networks or equivalent.
605.473 High-Speed Networking Technologies
Zheng
Network evolution has been driven by the need to provide
multimedia (i.e., voice, data, video, and imagery) commu- 605.477 Internetworking with TCP/IP I
nications in an efficient and cost-effective manner. Data,
video, and imagery particularly warrant high-speed and high- This course investigates the underlying technology of the
capacity network technologies. Moreover, the emergence of Internet. The presentation begins with a survey of distributed
the Internet and Internet-based services such as the World applications operating over the Internet, including the web,
Wide Web (WWW) and the current trend toward converg- electronic mail, VoIP, instant messaging, file transfers and
ing voice and video services have accelerated the demand peer-to-peer file sharing. The course investigates the details
for high-speed network technologies. This course provides of the Internet architecture and the TCP/IP protocol suite,
an in-depth understanding of various existing and emerg- covering the protocols that provide communications services
ing high-speed networking technologies. Specific technolo- to end systems and the management and control protocols
gies covered include Digital Transmission System, Digital that create the Internet from disparate underlying networks
Subscriber Line (DSL), Integrated Service Digital Network and technologies. Communications-related protocols ana-
(ISDN), Frame Relay, Asynchronous Transfer Mode (ATM), lyzed in detail include the foundational Internet Protocol
Synchronous Optical Network (SONET), Wavelength Divi- (IP), the connection-oriented reliable Transmission Control
sion Multiplexing (WDM), Dense WDM (DWDM), and Protocol (TCP), the connectionless User Datagram Protocol
Optical Networking. (UDP) and the Real-Time Protocol (RTP) for streaming
media. To allow the student to understand the control and
Prerequisite: 605.471 Principles of Data Communications
management of the Internet, the course analyzes protocols
Networks.
that support naming (DNS), addressing and configuration
Krishnan (DHCP), management (SNMP) and the dynamic IP routing
protocols RIP, OSPF and BGP.
605.474 Network Programming
Emphasis is placed on the theory and practice associated Prerequisite: 605.471 Principles of Data Communications
with the implementation and use of the most common pro- Networks.
cess-to-process communications associated with Unix. The DeSimone, Scott
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Computer Science
605.478 Cellular Communications Systems there is continuing pressure to develop and deploy capabili-
This course introduces the principles of cellular commu- ties more quickly to enable organizations to remain competi-
nications systems. Second generation (2G) digital, mobile tive. This pressure has led to the development of languages
cellular, and personal communications systems (PCS) con- and frameworks geared toward rapid prototyping, with Ruby
cepts are discussed, including the cellular concept, frequency on Rails being the most popular. Ruby on Rails is a Model-
reuse, propagation, multiple access, power control, handoff, View-Controller (MVC) framework that enables efficient
and traffic engineering. Limitations of 2G cellular systems application development and deployment. Techniques such
are described, and improvements proposed by 2.5G and as Convention over Configuration and Object-Relational
3G cellular standards to support high-rate data services are Mapping with Active Record along with enhanced AJAX
presented. Emphasis is placed on layer 2 and above such as support offer a simple environment with significant produc-
Graduate Programs
retransmission protocols, medium access control, call pro- tivity gains. This code-intensive course introduces Ruby on
cessing, interworking, radio resource management (e.g., fre- Rails, the patterns it implements, and its applicability to the
quency, time, and power), QoS provisioning, scheduling, rapid development of collaborative applications.
and mobility management (e.g., mobile IP). The Wireless Prerequisite: 605.481 Principles of Enterprise Web Develop-
Local Area Networking IEEE 802.11 WLAN, the Wireless ment or equivalent.
Metropolitan Area Networking IEEE 802.16 (Fixed and Hazins
Mobile) WiMAX, and Wireless Personal Area Networking
IEEE 802.15 Bluetooth are discussed for their roles in 3G. 605.486 Mobile Application Development for the
The Media Independent Handover standard IEEE 802.21 Android Platform
(e.g., integrating WLAN and 3G cellular networks to provide
This project-oriented course will investigate the issues sur-
session/service continuity) is also introduced. Cellular stan-
rounding application development for mobile platforms.
dards are examined, including U.S. 2G code-division multi-
First, we will look at techniques for building applications
ple access (CDMA) IS-95A, 2.5G IS-95B, 3G cdma2000 1x,
that adapt to the ways in which mobile apps differ from tra-
and 1x-EVDO. Other standards discussed include European
ditional desktop or web-based apps: constrained resources,
2G time-division multiple access (TDMA) Global System
small screen sizes, varying display resolutions, intermittent
for Mobile communication (GSM), 2.5G General Packet
network connectivity, specialized sensors, security restrictions,
Radio Service (GPRS), 2.5G Enhanced Data Rates for GSM
and so forth. Second, we will look at best practices for making
Evolution (EDGE), 3G wideband-CDMA (W-CDMA),
mobile applications flexible: using XML-based layouts, man-
and 4G Long Term Evolution (LTE).
aging multimedia, storing user data, networking via Bluetooth
Prerequisite: 605.471 Principles of Data Communications and Wi-Fi, determining device location and orientation,
Networks. deploying applications, and gracefully handling shutdowns
Mishra, Shyy and restarts to the application. Optional topics may include
embedding web components with WebKit, showing maps
605.481 Principles of Enterprise Web Development with the Google Maps plugin, and storing local data with
This course examines three major topics in the development SQLite. Students will be provided links to download free tools
of applications for the World Wide Web. The first is website for building and testing Android apps; there is no requirement
development using HTML and related standards. The sec- that students own a physical Android device.
ond is the implementation of client-side applications using Prerequisite: 605.481 Principles of Enterprise Web Develop-
the Java programming language, including user interface ment, or equivalent Java experience.
development, asynchronous event handling, multithread- Stanchfield
ed programming, and network programming. Distributed
object protocols via RMI or CORBA and distributed data- 605.701 Software Systems Engineering
base access via JDBC may also be introduced. The third
Software Systems Engineering applies engineering principles
topic is the design of server-side web applications, for which
and the system view to the software development process.
students will examine the underlying web protocol (HTTP),
The course focuses on the engineering of complex systems
the development of client-side interfaces (e.g., via HTML
that have a strong software component. This course is based
forms), and the implementation of server-side programs (e.g.,
on the philosophy that the key to engineering a good soft-
via Java servlets or traditional CGI).
ware system lies just as much in the process that is followed
Evans, Naber, Shyamsunder, Spiegel as in the purely technical regime. The course will show how
good a software development process is and how to make
605.484 Agile Development with Ruby on Rails a software process better by studying successful techniques
Modern web applications are expected to facilitate collabora- that have been employed to produce correct software systems
tion, with user participation being a significant facet of the within budget. Topics are explored in a sequence designed
system. Components such as wikis, blogs, and forums are to reflect the way one would choose to implement process
now commonplace. While feature sets continue to expand, improvements. These topics include steps to initiate process
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Computer Science
change, methods to establish control over the software pro- 605.707 Design Patterns
cess, ways to specify the development process, methods for Software patterns encapsulate the knowledge of experienced
quantitative process control, and how to focus on problem software professionals in a manner that allows developers to
prevention. Students will prepare term projects. apply that knowledge to similar problems. Patterns for soft-
Prerequisite: One software engineering course beyond ware are analogous to the books of solutions that enable elec-
605.401 Foundations of Software Engineering. trical engineers and civil engineers to avoid having to derive
every new circuit or bridge design from first principles. This
Donaldson and Siegel, White course will introduce the concept of software patterns, and
explore the wide variety of patterns that may be applied to
605.702 Service-Oriented Architecture the production, analysis, design, implementation, and main-
Graduate Programs
Service-Oriented Architecture (SOA) is a way to organize and tenance of software. The format of the course will empha-
use distributed capabilities that may be controlled by differ- size the discussion of patterns and their application. Each
ent owners. SOA provides a uniform means to offer, discover, student will be expected to lead a discussion and to actively
interact with, and use capabilities to produce desired effects participate in others. Students will also be expected to intro-
consistent with specified preconditions and requirements. This duce new patterns or pattern languages through research or
course describes SOA concepts and design principles, interop- developed from their own experience. Programming exercises
erability standards, security considerations, runtime infrastruc- performed outside of class will be used enhance discussion
ture and web services as an implementation technology for and illustrate the application of patterns.
SOA. Given the focus on shared capabilities, SOA involves Prerequisite: 605.404 Object Oriented Programming with
more than technology. Therefore, additional topics will include C++ or permission of instructor.
the impact of SOA on culture, organization, and governance.
Lindberg, Stanchfield
Prerequisite: 605.401 Foundations of Software Engineering.
Highly Recommended: 605.704 Object-Oriented Analysis and 605.708 Tools and Techniques of Software Project
Design or equivalent experience. Management
This course examines tools and techniques used to lead soft-
John, Pole
ware-intensive programs. Techniques for RFP analysis and
proposal development are explored, and techniques of size
estimation (function points, feature points, and lines-of-code
This course describes fundamental principles of object-ori- estimation) and the use of models such as COCOMO to con-
ented modeling, requirements development, analysis, and vert size to effort and schedule are described. In addition, con-
design. Topics include specification of software requirements; version of estimated effort to dollars and the effects of fringe,
object-oriented analysis approaches, including dynamic and overhead, skill mix profiles, and staffing profiles on total dollar
static modeling with the Unified Modeling Language (UML cost are explained. Moreover, techniques for estimating effort
v2); object-oriented design; object-oriented reuse, includ- and planning software COTS intensive development programs
ing design patterns; and software implementation concerns. are described, and tools and techniques for measuring process
Optional topics include the Systems Modeling Language maturity and process efficiency (e.g., CMMi, Lean, Six Sigma,
(SysML), Object-Oriented Systems Engineering Methodol- and Kaizen) are addressed. The course also investigates the
ogy (OOSEM), managing object-oriented projects, and the formation and management of “virtual teams” and techniques
Object Constraint Language (OCL). that can be used to ensure success in this environment. Finally,
Prerequisite: Experience in object-oriented programming the course addresses topics that require collaboration between
using a language such as Java or C++. the project manager and human resources such as personnel
retention strategies, managing unsatisfactory performance, and
Demasco, Ferguson, Pierson, Schappelle, Schepers formal mentoring programs.
Prerequisite: 3-5 years technical work experience is
605.705 Software Safety
recommended.
This course describes how to develop and use software that
Bowers
is free of imperfections that could cause unsafe conditions
in safety-critical systems. Systems engineering and software 605.709 Seminar in Software Engineering
engineering techniques are described for developing “safe- This course examines the underlying concepts and latest
ware,” and case studies are presented regarding catastrophic topics in software engineering. Potential topics include use
situations that resulted from software and system faults which of Open Source, effective software development techniques
could have been avoided. Specific techniques of risk analysis, such as agile methods, automated code generation, testing
hazard analysis, fault tolerance, and safety tradeoffs within strategies, development tools and environments, patterns,
the software engineering paradigm are discussed. metrics in the development process, successful teamwork,
Gieszl and training aspects of CMMI. Each student will select and
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Computer Science
report on a software engineering topic, do independent topic and provide practical experience. During the semester, each
research, and prepare a paper describing a major software student will complete a modeling project of a complex sys-
engineering issue. The course is taught using a seminar format tem. While this course is intended for computer science
in which significant portions of the class period are set aside or engineering students interested in modeling any com-
for students to lead and actively participate in discussions. plex system, it may also be taken by Bioinformatics students
Prerequisite: One software engineering course beyond interested in modeling complex biological systems. Students
605.401 Foundations of Software Engineering, or permis- interested in bioinformatics will study a parallel track expos-
sion of the instructor. ing them to existing whole cell modeling tools such as E-Cell,
Pole COPASI, and BioSpice.
Prerequisites: Knowledge of elementary probability and statis-
Graduate Programs
605.713 Robotics tics and previous exposure to differential equations. Students

This course introduces the fundamentals of robot technology applying this course to the MS in Bioinformatics should also
with an emphasis on programming concepts. Robot control, have completed at least one Bioinformatics course prior to
planning, and sensing will be discussed. Topics covered in enrollment.
robot control include robot hardware, the mathematics of Note: This course may be counted toward a three course
robot control (both local and global coordinate systems and concentration in Bioinformatics.
the transformations between them), and robot programming.
Planning topics include obstacle avoidance, task planning, Weisman
and navigation. Sensing topics include vision (including
605.721 Design and Analysis of Algorithms
binary image processing), robot vision, and knowledge-based
vision systems. Students will deepen their understanding In this follow-on course to 605.421 Foundations of Algo-
through several programming assignments. rithms, design paradigms are explored in greater depth, and
more advanced techniques for solving computational prob-
Prerequisite: 605.445 Artificial Intelligence is recommended.
lems are presented. Topics include randomized algorithms,
Hanson adaptive algorithms (genetic, neural networks, simulated
605.715 Software Development for Real-Time annealing), approximate algorithms, advanced data struc-
Embedded Systems tures, online algorithms, computational complexity classes
This course examines the hardware and software technologies and intractability, formal proofs of correctness, sorting net-
behind real-time, embedded computer systems. From smart works, and parallel algorithms. Students will read research
kitchen appliances to sophisticated flight control for airliners, papers in the field of algorithms and will investigate the
embedded computers play an important role in our everyday practicality and implementation issues with state-of-the-art
lives. Hardware topics include microcomputers and sup- solutions to algorithmic problems. Grading is based on prob-
port devices (e.g., flash, ROM, DMA, timers, clocks, A/D, lem sets, programming projects, and in-class presentations.
and D/A), as well as common applications (e.g., servo and Prerequisites: 605.421 Foundations of Algorithms or equiva-
stepper motor control, automotive sensors, and voice pro- lent, and 605.203 Discrete Mathematics or equivalent.
cessing). Software topics focus on unique aspects of embed- Boon
ded programming and include interrupts, real-time control,
communication, common design patterns, and special test 605.722 Computational Complexity
considerations. The course also explores the unique tools Computational complexity theory is concerned with the
that are used to develop and test embedded systems. Several intrinsic complexity of computational tasks, asking what can
labs using a popular robotics development system and Java be achieved with limited computational resources. This course
reinforce the concepts presented. provides an introduction to complexity theory, emphasiz-
Prerequisite: Programming experience with Java. ing the implications of theoretic results for applications in
Ferguson computer science. In doing so, it comes to grips with ques-
tions such as the following: Is it easier to verify a proposed
605.716 Modeling and Simulation of Complex solution to a problem, than it is to find a solution? Is it easier
Systems to find an approximate solution than an exact solution? Are
This course focuses on the application of modeling and simu- randomized algorithms more powerful than deterministic
lation principles to complex systems. A complex system is a algorithms? Are quantum computers more powerful than
large-scale nonlinear system consisting of interconnected or classical computers? In studying the progress that has been
interwoven parts (such as a biological cell, the economy, or made on questions such as these, we will develop insights into
an ecological system). The course begins with an overview of the nature of computation and the implications of complexity
complex systems, followed by modeling and simulation tech- theory for the practical development of algorithms. Specific
niques based on nonlinear differential equations, networks, topics include the P vs. NP problem (why is this problem so
stochastic models, cellular automata, and swarm-like systems. fundamental, and why is it so hard to solve?); approximation
Existing software systems will be used to illustrate systems algorithms for NP-hard optimization problems; the limits of
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Computer Science
approximability; randomized algorithms, interactive proofs, course provides an introduction to quantum computation for
and pseudorandomness; complexity and cryptography; and computer scientists. Familiarity with quantum mechanics is
quantum complexity. All background in theoretical computer not a prerequisite. Instead, relevant aspects of the quantum
science is developed as needed in the course. mechanics formalism will be developed in class. The course
Prerequisites: 605.421 Foundations of Algorithms or equivalent. begins with a discussion of the quantum mechanics formal-
ism, and of relevant ideas from (classical) computational
Zaret
complexity. It then develops the idea of a quantum computer.
605.725 Queuing Theory with Applications to This discussion provides the basis for a detailed examination
Computer Science of Shor’s polynomial time algorithm for integer factorization,
and Grover’s search algorithm. The course concludes with a
Queues are a ubiquitous part of everyday life; common exam-
Graduate Programs
discussion of quantum cryptography. Required work will
ples are supermarket checkout stations, help desks call cen-
include problem sets and a research project.
ters, manufacturing assembly lines, wireless communication
networks, and multi-tasking computers. Queuing theory Prerequisites: Some familiarity with linear algebra and with
provides a rich and useful set of mathematical models for the design and analysis of algorithms.
the analysis and design of service process for which there is Zaret
contention for shared resources. This course explores both
theory and application of fundamental and advanced models 605.741 Distributed Database Systems: Cloud
in this field. Fundamental models include single and mul- Computing and Data Warehouses
tiple server Markov queues, bulk arrival and bulk service This course investigates the architecture, design, and imple-
processes, and priority queues. Applications emphasize com- mentation of massive-scale data systems. The course discusses
munication networks and computer operations, but may foundational concepts of distributed database theory includ-
include examples from transportation, manufacturing, and ing design and architecture, security, integrity, query process-
the service industry. Advanced topics may vary. (This course ing and optimization, transaction management, concurrency
is the same as 625.734 Queuing Theory with Applications to control, and fault tolerance. It then applies these concepts
Computer Science.) to both large-scale data warehouse and cloud computing
Prerequisites: Multivariate calculus and a graduate course in systems. The course blends theory with practice, with each
probability and statistics such as 625.403 Statistical Methods student developing both distributed database and cloud com-
and Data Analysis or equivalent. puting projects.
Nickel Prerequisites: 605.441 Principles of Database Systems, and or
equivalent knowledge of Java and HTML.
605.727 Computational Geometry Recommended: Familiarity with “Big Oh” concepts and notation.
This course covers fundamental algorithms for efficiently Silberberg
solving geometric problems, especially ones involving 2D
polygons and 3D polyhedrons. Topics include elementary 605.744 Information Retrieval
geometric operations; polygon visibility, triangulation, and A multibillion-dollar industry has grown to address the prob-
partitioning; computing convex hulls; Voronoi diagrams lem of finding information. Commercial search engines are
and Delaunay triangulations with applications; special poly- based on information retrieval: the efficient storage, organiza-
gon and polyhedron algorithms such as point containment tion, and retrieval of text. This course covers both the theory
and extreme point determination; point location in a planar and practice of text retrieval technology. Topics include auto-
graph subdivision; and robot motion planning around poly- matic index construction, formal models of retrieval, Inter-
gon obstacles. The course covers theory to the extent that it net search, text classification, multilingual retrieval, question
aids in understanding how the algorithms work. Emphasis is answering, and related topics in NLP and computational
placed on implementation, and programming projects are an linguistics. A practical approach is emphasized and students
important part of the course work. will complete several programming projects to implement
Prerequisite: Familiarity with linear algebra. components of a retrieval engine. Students will also give
Hansen a class presentation based on an independent project or a
research topic from the IR literature.
605.728 Quantum Computation McNamee, Navarro
Polynomial time quantum algorithms, which exploit non-
classical phenomena such as superposition and entangle- 605.745 Reasoning under Uncertainty
ment, have been developed for problems for which no This course provides an introduction to current research in
efficient classical algorithm is known. The discovery of these uncertainty management, which is one of the central research
fast quantum algorithms has given rise to the field of quan- areas within artificial intelligence. The principal focus of the
tum computation, an emerging research area at the intersec- course is on Bayesian networks, which are at the cutting
tion of computer science, physics, and mathematics. This edge of this research. Bayesian networks are graphical mod-
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Computer Science
els which, unlike traditional rule-based methods, provide 605.751 Computational Aspects of Molecular
techniques for reasoning under conditions of uncertainty in Structure
a consistent, efficient, and mathematically sound way. While This course focuses on computational methods for study-
Bayesian networks are the main topic, the course examines ing protein and RNA structure, protein-protein interactions
a number of alternative formalisms as well. Specific topics and biological networks. Algorithms for prediction of RNA
include foundations of probability theory, Bayesian networks secondary structure, protein-protein interactions, annota-
(knowledge representation and inference algorithms), belief tion of protein secondary/tertiary structure and function
functions (Dempster-Shafer theory), graphical models for are studied in depth. Students will apply various computer
belief functions, and fuzzy logic. Pertinent background in programs and structure-visualization software to secondary
probability and theoretical computer science is developed as and tertiary protein structure prediction, structure-structure
Graduate Programs
needed in the course. comparison, protein domain classification, annotation of

Butcher functionally important sites and protein design. Interesting
aspects of protein interaction and metabolic networks are
605.746 Machine Learning also discussed.
How can machines improve with experience? How can they Prerequisites: 605.205 Molecular Biology for Computer Sci-
discover new knowledge from a variety of data sources? entists or equivalent.
What computational issues must be addressed to succeed? Recommended: 605.451 Principles of Computational Biology.
These are questions that are addressed in this course. Topics
Przytycka and Panchenko
range from determining appropriate data representation and
models for learning, understanding different algorithms for 605.754 Analysis of Gene Expression and High-
knowledge and model discovery, and using sound theoretical Content Biological Data
and experimental techniques in assessing performance. Spe-
The development of microarray technology, rapid sequenc-
cific approaches covered include statistical techniques (e.g.,
ing, protein chips, and metabolic data has led to an explo-
k-nearest neighbor and Bayesian learning), logical techniques
sion in the collection of “high-content” biological data. This
(e.g., decision tree and rule induction), function approxima-
course explores the analysis and mining of gene expression
tion (e.g., neural networks and kernel methods), and rein-
data and high-content biological data. A survey of gene and
forcement learning. The topics are discussed in the context of
protein arrays, laboratory information management systems,
current machine learning and data mining research. Students
data normalization, and available tools is followed by a more
will participate in seminar discussions and will complete and
in-depth treatment of differential gene expression detection,
present the results of an individual project.
clustering techniques, pathway extraction, network model
Prerequisite: 605.445 Artificial Intelligence is recommended, building, biomarker evaluation, and model identification.
but not required. Both clinical and research data will be considered. The stu-
Sheppard dent will develop skills in statistical analysis and data mining
including statistical detection theory, nonlinear and mul-
605.747 Evolutionary Computation tiple regression, entropy measurement, detection of hidden
Recently, principles from the biological sciences have moti- patterns in data, heuristic search and learning algorithms.
vated the study of alternative computational models and Applied mathematical concepts and biological principles will
approaches to problem solving. This course explores how be introduced, and students will focus on algorithm design
principles from theories of evolution and natural selection and software application for designing and implementing
can be used to construct machines that exhibit nontrivial novel ways of analyzing gene, protein and metabolic expres-
behavior. In particular, the course covers techniques from sion data. Students will complete data analysis assignments
genetic algorithms, genetic programming, and artificial life individually and in small teams.
for developing software agents capable of solving problems Prerequisites: 605.205 or equivalent or a prior course in bio-
as individuals and as members of a larger community of informatics, a course in probability and statistics, and ability
agents. Specific topics addressed include representation and to program in a high-level language.
schemata; selection, reproduction, and recombination; theo- Note: There are no exams, but programming assignments are
retical models of evolutionary computation; optimal alloca- intensive. Students in the MS Bioinformatics program may
tion of trials (i.e., bandit problems); search, optimization, take both this course and 410.671 Microarrays and Analysis
and machine learning; evolution of programs; population as the content is largely mutually exclusive.
dynamics; and emergent behavior. Students will participate
Staff
in seminar discussions and will complete and present the
results of an individual project. 605.755 Systems Biology
Prerequisite: 605.445 Artificial Intelligence is recommended During the last decade, systems biology has emerged as an
but not required. effective tool for investigation of complex biological prob-
Sheppard lems, placing emphasis on the analysis of large-scale datasets
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Computer Science
and quantitative treatment of experimental results. In this MAN based enterprise intranets. The structure and operation
course students will explore recent advances in systems biol- of the IEEE 802 media access control (MAC) and physi-
ogy analysis of intracellular processes. Examples of modeling cal layer protocols are examined in detail. The 802.2 logi-
and experimental studies of metabolic, genetic, signal trans- cal link control, 802.3/Ethernet, 802.4 token bus, and the
duction and cell cycle regulation networks will be studied 802.5 token ring protocols are analyzed, and the construction
in detail. The classes will alternate between consideration of of LAN-based enterprise intranets is examined through a
network-driven and network element (gene, metabolite, or detailed analysis of bridging, routing, and switching tech-
protein) driven approaches. Students will learn to use Bool- niques. High-speed LAN technologies are discussed through
ean, differential equations, and stochastic methods of analysis an examination of FDDI, Fast Ethernet, 100VG AnyLAN,
and will become acquainted with several powerful experi- ATM LAN Emulation (LANE) and Fibre Channel protocols
Graduate Programs
mental techniques, including basics of microfabrication and along with the new standards for Gigabit and 10 Gigabit
microfluidics. As a course project, students will develop a Ethernet. In addition, the 802.6 DQDB and 802.17 Resil-
model of a signal transduction or metabolic pathway. ient Packet Ring MAN protocols are discussed. Finally, the
Prerequisites: Courses in molecular biology (605.205 Molecu- new and emerging wireless LAN and MAN standards are
lar Biology for Computer Scientists or 410.602 Molecular examined. The 802.11 (WiFi) wireless LAN and 802.15
Biology ) and differential equations. (Bluetooth) wireless PAN standards are discussed in detail
along with the emerging 802.16 (WiMAX) wireless MAN
Levchenko
standard. Topics include Manchester and Differential Man-
605.759 Independent Project in Bioinformatics chester encoding techniques; bus, star, and ring topologies;
optical fiber, coaxial cable, and UTP media; baseband, broad-
This course is for students who would like to carry out a
band, and carrierband bus networks; hubs, switched LANs
significant project in bioinformatics as part of their graduate
and full duplex LANs; VLANs and prioritization techniques;
program. The course may be used to conduct minor research,
transparent and source routing bridge algorithms; packet
an in-depth literature survey, or a software implementation
bursting and carrier extension schemes; wireless spread spec-
related to recent developments in the field. Students who
trum and frequency hopping transmission techniques; wire-
enroll in this course are encouraged to attend at least one
less collision avoidance media access control; and security
industry conference in bioinformatics related to their area
schemes. Students may use the network lab to configure LAN
of study. To enroll in this course, the student must be with-
switches and Cisco routers, as well as to observe the intercon-
in two courses of degree completion and must obtain the
nection of LAN networks.
approval and support of a sponsoring faculty member.
Prerequisite: 605.471 Principles of Data Communications
Note: A student may not receive credit for both 605.759 and
Networks.
605.802 Independent Study in Computer Science II.
Hsu, Nieporent
Staff
605.767 Applied Computer Graphics
Network management (NM) refers to the activities, meth-
This course examines advanced rendering topics in computer
ods, operational procedures, tools, communications inter-
graphics. The course focuses on the mathematics and theory
faces, protocols, and human resources that pertain to the
behind 3D graphics rendering. Topics include 3D surface
operation, administration, maintenance, and provisioning
representations including fractal geometry methods; visible
of communications networks and plan for their growth and
surface detection and hidden surface removal; and surface
evolution. The course will cover network management stan-
rendering methods with discussion of lighting models, color
dards, technologies, industry best practices and case studies.
theory, texturing, and ray tracing. Laboratory exercises pro-
The study areas are broadly organized under the functional
vide practical application of these concepts. The course also
areas of Fault Management, Configuration Management,
includes a survey of graphics rendering applications (anima-
Accounting Management, Performance Management,
tion, modeling and simulation, and realistic rendering) and
and Security Management. Security management includes
software. Students perform laboratory exercises using the
identity management, authentication, authorization, access
C++ programming language.
control, intrusion prevention, detection, and correction.
Prerequisite: 605.467 Computer Graphics or familiarity with Network managers set, monitor and maintain certain per-
three-dimensional viewing and modeling transformations. formance metrics pertaining to the functional areas to ensure
Nesbitt high performance levels and Quality of Service (QoS) to the
users. Network management includes network architecture
605.771 Wired and Wireless Local and Metropolitan planning, design, and operations as well as IT management.
Area Networks This course covers major Internet and Telecommunications
This course provides a detailed examination of wired and standards for network management as they apply to voice,
wireless Local and Metropolitan Area Network technologies, data, and video services: SNMPv1, SNMPv2,SNMPv3,
protocols, and the methods used for implementing LAN and RMON, and TMN. Other standards covered include 3GPP/
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Computer Science
IMS, Cable, DSL, RSVP, TIA-1039, DiffServ, and InteServ. tion and to the addressing architecture are discussed in detail.
This course will also examine areas in network management Finally, the development of the Voice Over IP (VoIP) appli-
that can be automated. cation and the convergence of circuit switching and packet
Prerequisites: 605.771 Wired and Wireless Local and Metro- switching are discussed. Topics include subnet addressing,
politan Area Networks, 605.472 Computer Network Archi- CIDR, DHCP, DNS, NAT, IntServ, DiffServ, RSVP, CIP,
tectures and Protocols, 605.477 Internetworking with TCP/ MPOA, IP Switching, Tag Switching, MPLS, IP Multicast,
IP I, or 635.411 Principles of Network Engineering. IGMP, Reliable Musticast, Multicast Routing Protocols, IP
Krishnan, Scoggins Mobility Home Agents and Foreign Agents, Message Tunnel-
ing, Proxy and Gratuitous ARP, VPN Tunneling, PPTP, L2F,
605.775 Optical Networking Technology L2TP and SOCKSv5, VPN security, IPSec, Encapsulating
Graduate Programs
The Internet has hundreds of millions of users, is growing Security Payload header, Authentication Header, Security
rapidly, and continues to evolve to accommodate an increas- Association, IPv6 Addressing, IPv6 protocol and extension
ing number of voice, data, video, and imagery applications headers, Neighbor Discovery, IPv6 Stateless Address Auto-
with diverse service requirements. Internet Protocol (IP) is configuration, DHCPv6, VoIP, H.323 Gateways and Gate-
the primary unifying protocol converging these applications keeper, SIP, SDP, RTP, MGCP, Megaco/H.248.
and services over the Internet. The Internet’s evolution has Prerequisite: 605.477 Internetworking with TCP/IP I.
been accompanied by exponentially growing traffic volume
Nieporent
on the network infrastructure. Optical networks are ide-
ally suited to carry such large volumes of traffic, and the 605.778 Voice Over IP
next generation of optical networks will be optimized for
The Internet has been growing exponentially and continues
delivery of IP services while providing capacity in the range
to evolve to accommodate an increasingly large number of
of terabits per second in a scalable and flexible way to sup-
applications with diverse service requirements. A remarkable
port service such as Voice Over IP (VoIP) and IP Television
aspect of this evolution is the convergence of real-time com-
(IPTV). This course provides an in-depth understanding of
munications services with traditional data communications
existing and emerging optical network technologies. Specific
services over the Internet. In particular, Internet Telephony,
topics covered include basics of fiber optic communications,
or Voice Over IP is one of the most promising services cur-
SONET, DWDM, optical Ethernet, FTTB, FTTH, optical
rently being deployed. While there are many benefits to Voice
wavelength switching, IP over optical networks, MPLS, and
over IP such as cost effectiveness and enhanced features, there
GMPLS. Additional topics that may be discussed include
exist a number of barriers to the widespread deployment of
optical network standards, network control and manage-
Internet Telephony. The purpose of this course is to provide
ment, static and dynamic service provisioning, optical net-
in-depth understanding of the concept and operation of
work design, and future directions.
Voice Over IP and discuss issues and strategies to address the
Prerequisite: 605.473 High-Speed Networking Technologies, issues. In this course, students will gain understanding of how
or permission of the instructor. to adapt an IP packet network, which is basically designed
Krishnan for data, to provide wide-area voice communications. Topics
include telephony fundamentals, Voice Over IP concepts,
605.777 Internetworking with TCP/IP II adapting IP networks to support voice, H.323 and SIP sig-
This course builds on the foundation established in 605.477, naling protocols, QoS issues in IP networks, IETF standards,
Internetworking with TCP/ IP I. Changes are being made in and network management.
the infrastructure, operation, and protocols of the Internet
Prerequisite: 605.477 Internetworking with TCP/IP I or
to provide the performance and services needed for real-time
605.473 High-Speed Networking Technologies, or signifi-
applications. This course first examines the current architec-
cant Internet technology-related work experience.
ture and operation of the Internet. The classful addressing
concept will be introduced and the mapping of Internet Krishnan
addresses to physical addresses is discussed along with the
extensions that have been made to the addressing paradigm, 605.782 Web Application Development with Java
including subnet addressing, classless addressing, and net- Formerly 605.782 Web Application Development
work address translation. The performance enhancements with Servlets and JavaServer Pages (JSP)
being developed to provide quality of service (QoS) over the This project-oriented course will enable the students to use
Internet and to provide faster routing through the use of IP various techniques for building browser-based applications
switching techniques are discussed. Techniques for providing for dynamically generated websites, e-commerce, web-
multicasting and mobility over the Internet are examined. enabled enterprise computing, and other applications that
Security considerations are addressed by examining Virtual require web access to server-based resources. Particular atten-
Private Networks and the use of IP Security (IPSec) proto- tion will be paid to methods for making web-based applica-
cols. The next generation IP protocol (IPv6) is introduced, tions efficient, maintainable, and flexible. The course will
and the changes and enhancements to the IP protocol opera- use at least two sets of tools: servlets/JSP and a higher-level
86
Computer Science
Java-based framework such as JSF 2.0. Major topics will Students will learn the benefits of and the technical architec-
include handling HTTP request information, generating ture for using REST in applications, including how to design,
HTTP response data, tracking sessions, designing custom tag build, and test RESTful services using Java and JAX-RS. This
libraries or components, page templating, asynchronous page includes the role of key technologies such as HTTP, Exten-
updates with Ajax, and separating content from presentation sible Markup Language (XML), and JavaScript Object Nota-
through use of the MVC architecture. Additional topics may tion (JSON). Students also learn how to consume RESTful
include HTML5, database access techniques for web apps, services in applications, including the role of JavaScript and
web app security, and dependency injection in web apps (e.g., Ajax, and how the RESTful approach differs from the SOAP-
with the Spring framework). based approach while comparing and contrasting the two
Prerequisite: 605.481 Principles of Enterprise Web Develop- techniques. Finally, the course will review other web services
Graduate Programs
ment or equivalent Java experience. specifications and standards, and it will describe the use of
web services to resolve business applications integration issues.
Chaikin, Chittargi, Hall
WS-I Basic Profile and other guidance documents and recom-
mended practices will be discussed in the context of achieving
605.784 Enterprise Computing with Java
high levels of web services interoperability.
This course covers enterprise computing technologies using
Prerequisites: 605.444 XML Design Paradigms or equivalent
Java Enterprise Edition (Java EE). The course describes how to
XML and Java programming experience.
build multi-tier distributed applications, specifically address-
ing web access, business logic, data access, and applications Recommended: Knowledge of the J2EE platform and pro-
supporting Enterprise Service technologies. For the web access gramming model
tier, the focus will be on development using Servlets and JSP Felikson
with an emphasis on integrating the web tier with enterprise
applications. For the Business Logic Tier, session beans for 605.786 Enterprise System Design and
synchronous business processing and message-driven beans Implementation
and timers for asynchronous business processing will be This course explores enterprise architectures for the develop-
described. The Data Access tier discussion will focus on Java ment of scalable distributed systems. Effective patterns for
Database Connectivity (JDBC), data access patterns, and distributed data access, MVC-based web tiers, and business
the Java Persistence API. Finally, enterprise services will be logic components are explored as students build complex
discussed, including the Java Naming and Directory Interface applications. Factors such as caching and clustering that
(JNDI), the Java Message service (JMS), Remote Method enable distributed systems to scale to handle potentially
Invocation (RMI), Java Transaction API (JTA), and Java EE thousands of users are a primary focus. In addition, creating
Security. Students will build applications using the technolo- a reusable blueprint for an enterprise architecture will be
gies presented. discussed. Applications developed utilizing these concepts are
selected from current research topics in information retrieval,
Prerequisite: 605.481 Principles of Enterprise Web Develop-
data visualization, and machine learning.
ment or equivalent Java experience.
Prerequisites: 605.784 Enterprise Computing with Java.
Felikson, Shyamsunder, Stafford
Recommended: 605.707 Design Patterns or equivalent
605.785 Web Services with SOAP and REST: experience.
Frameworks, Processes, and Applications M. Cherry and P. Cherry
Web services is a technology, process, and software paradigm
to extend the web from an infrastructure that provides services 605.787 Rich Internet Applications with Ajax
for humans to one that supports business integration over the Using a web browser to access online resources is convenient
web. This course presents concepts, features, and architectural because it provides universal access from any computer on
models of web services from three perspectives: framework, any operating system in any location. Unfortunately, it often
process, and applications. Students will study three emerging results in a poor user experience because HTML is a weak
standard protocols: Simple Object Access Protocol (SOAP), and non-interactive display language and HTTP is a weak
Web Services Description Language (WSDL) and Universal and inefficient protocol. Full-fledged browser-embedded
Description, Discovery and Integration (UDDI). In contrast, programs (e.g., ActiveX components, Java applets) have not
Representational State Transfer (REST) is an architectural succeeded in penetrating the market adequately, so a new
style for designing networked applications and exposing Web class of applications has grown up that uses only the capa-
Services. REST delivers simplicity and true interoperability bilities already available in most browsers. These applications
and is an alternative to complex mechanism such as CORBA, were first popularized by Google, but have since exploded
RPC or SOAP-based Web Services and allows using simple in popularity throughout the developer community. The
HTTP to make calls between machines. The course will techniques to implement them were based on a group of
explain the REST principles and show how to use the Java technologies collectively known as Ajax, and the resultant
standards for developing applications using RESTful API. applications were richer than the relatively static pure-
87
Computer Science
HTML-based web applications that preceded them. These 605.802 Independent Study in Computer Science II
applications have become known as Ajax applications, rich Students wishing to take a second independent study in
internet applications, or web 2.0 applications. This course computer science should sign up for this course.
will examine techniques to develop and deploy Ajax applica- Prerequisites: 605.801 Independent Study in Computer
tions. We will look at the underlying techniques, then explore Science I and permission of a faculty mentor, the student’s
client-side tools (e.g., scriptaculous), server-side tools (e.g., academic advisor, and the program chair. A student may
Direct Web Remoting), and hybrid tools (e.g., the Google not receive credit for both 605.759 Independent Project in
Web Toolkit) to simplify the development process. We will Bioinformatics and 605.802.
also examine closely related technologies such as Flash/Flex Staff
and OpenLaszlo, along with the accompanying issues of
Graduate Programs
usability, efficiency, security, and portability. 600.647 Advanced Topics in Wireless Networks
Prerequisite: 605.782 Web Application Development with This class will survey current research in wireless communica-
Java or equivalent servlet and JSP experience. tion networks. These types of networks have been growing
Chaikin, Hall, Shyamsunder exponentially in the past several years and include a host of
different network types: ad hoc, cell phone, access point,
605.801 Independent Study in Computer Science I sensor, etc. The class will build understanding of all layers
This course permits graduate students in computer science of wireless networking and the interactions between them
to work with a faculty mentor to explore a topic in depth or (including: physical, data link, medium access control, rout-
conduct research in selected areas. Requirements for comple- ing, transport, and application). The topics of security, energy
tion include submission of a significant paper or project. efficiency, mobility, scalability, and their unique characteris-
Prerequisites: Seven computer science graduate courses tics in wireless networks will be discussed.
including the foundation courses, three concentration area Prerequisites: 600.344/444 & 600.363/463, or permission
courses, and two courses numbered 605.7xx; or admission of the instructor.
to the advanced certificate for post-master’s study. Students Awerbuch, Mishra
must also have permission of a faculty mentor, the student’s
academic advisor, and the program chair.
Staff
88
Electrical and Computer Engineering
Electrical and M.S.E. program provides graduate education in the context

of a full-time academic department. The aim is to provide
Computer Engineering
master’s level work in closer contact with full-time faculty
and Ph.D. candidates than is the case in the M.S. program.
The faculty are drawn primarily from the Department of
Electrical and computer engineering is concerned with the Electrical and Computer Engineering, but also from the
use of electrical phenomena for communication, compu- technical staff of the Applied Physics Laboratory. Additional
tation, information transformation, power generation and information concerning the M.S.E. program, including the
transmission, measurement, and control. Within these broad catalog and admission materials, may be obtained from the
categories exist application areas affecting nearly every facet Department of Electrical and Computer Engineering at
of society. Electrical and computer engineering draws upon
Graduate Programs
Homewood.
mathematics and the basic sciences of physics, chemistry,
and materials in developing the technology leading to new Program Committee
devices, and the techniques for describing and designing the
processes that take place in electrical systems. The strength Brian K. Jennison, Program Chair
of the Hopkins program lies in the active involvement of the Principal Professional Staff
faculty in research and development, and the faculty’s com- Applied Physics Laboratory
mitment to fostering students’ understanding of the theory Clinton L. Edwards, Program Vice Chair
and practice of the discipline. Senior Professional Staff
Within the Whiting School of Engineering, two mas- Applied Physics Laboratory
ter’s degree programs are offered in electrical and computer
engineering, the Master of Science and the Master of Science James J. Costabile
in Engineering. Vice President
Data Design Corporation
The Master of Science (M.S.) degree is offered through the
Engineering for Professionals program and is administered Andrew D. Goldfinger
by a program committee. The M.S. program course require- Principal Professional Staff
ments are described in detail below. It provides graduate Applied Physics Laboratory
education in both the fundamentals of various branches of Jeffrey G. Houser
electrical and computer engineering and in the more specific Electronics Engineer
aspects of current technologies of clear importance. The aim U.S. Army Research Laboratory
is to serve working engineers primarily; nearly all students
participate part time. Courses are offered during evening Daniel G. Jablonski
hours at the Applied Physics Laboratory, the Dorsey Center, Principal Professional Staff
and the Montgomery County Campus, or via online delivery. Applied Physics Laboratory
The faculty are drawn from the technical staff of the Applied Jin Ung Kang
Physics Laboratory, from government and local industry, and Professor, Electrical and Computer Engineering
from the full-time faculty of JHU’s Department of Electrical Whiting School of Engineering
and Computer Engineering.
The areas of interest within the M.S. program span a John E. Penn
broad spectrum of specialties. Courses are offered within the Electronics Engineer
general areas of telecommunications, computer engineering, U.S. Army Research Laboratory
RF and microwave engineering, photonics, electronics and Michael E. Thomas
the solid state, signal processing, and systems and control. Principal Professional Staff
Students who are interested may, with program approv- Applied Physics Laboratory
al, plan and complete a thesis project after all other require-
ments for the master’s degree have been completed. Such Douglas S. Wenstrand
students work with an advisor to conduct independent Principal Professional Staff
research and development in the field of electrical and com- Applied Physics Laboratory
puter engineering.
The Master of Science in Engineering (M.S.E.) degree is Applicants must meet the general requirements for admission
offered and administered by the Department of Electrical to graduate programs outlined in this catalog. In addition,
and Computer Engineering. Courses are offered during the applicants are expected to have 1) majored in an Accredita-
day and late afternoon hours, mainly at the Homewood cam- tion Board for Engineering and Technology (ABET)-accred-
pus. Admission and graduation requirements are similar to ited electrical and/or computer engineering program and 2)
those of the M.S. program, and interactions are possible. The compiled an average of B (3.0 on a 4.0 scale) or above for
89
all courses in mathematics, engineering, and the physical Course content is identical to that in the face-to-face offer-
sciences. Applicants who majored in a related science or engi- ings but available in a paced, asynchronous mode over the Inter-
neering field may also be accepted as candidates, provided net. Recorded lectures with associated multi-media content are
their background is judged by the admissions committee to augmented with online discussions and weekly synchronous
be equivalent to that stated above. office hours. Prospective and current students should consult
the EP website for the current online course offerings, course
Telecommunications Option schedules, and procedures for online programs.
Electrical and computer engineering students who select the
telecommunications option must complete the standard pro- Course Requirements
gram requirements with the following additional require- Each degree candidate for the M.S. is assigned an advisor.
Graduate Programs
ments. Of the minimum of seven electrical and computer Attainment of the degree requires completion often one-
engineering courses, at least five must be telecommunications term courses, specifically approved by the advisor, at least
courses. Of the maximum of three electives, at least two must seven of which must be in electrical and computer engineer-
be from the computer science networking option courses. ing. All courses must be numbered at or above the 400-
This option will be noted on the student’s transcripts. See level. At least four of the ten required courses must be at the
the Telecommunications and Networking Option page for a 700- level or above. At most, one course with a grade of C
complete description of the option and the courses that apply. may be used and no course with a grade lower than C. The
electrical and computer engineering courses may be selected
Photonics Option from among those offered through the M.S. degree program,
The M.S. in Electrical and Computer Engineering degree distinguished by the course prefix 525 and listed below, or
may be attained with a special option in photonics. This from among courses offered in the M.S.E. program of the
option will be noted on the student’s transcript. The photon- Department of Electrical and Computer Engineering. The
ics option comprises a required core of four optics courses latter are distinguished by the prefix 520 and are listed in the
(525.413, 525.425, and 525.491 plus one required course Arts and Sciences/Engineering Undergraduate and Gradu-
from the Applied Physics photonics list), combined with ate Programs Catalog. Limited opportunity is available for
three additional optics courses selected from the photonics replacement of course work by appropriate project work (see
list below. The three courses needed to complete the degree the courses 525.801 and 525.802 below) or through a gradu-
may be any courses approved by the advisor, selected to fulfill ate thesis (525.803-804).
the general requirements for the M.S. described below. Appli- At most, three of the 10 courses required for the M.S.
cants for the M.S. who desire to participate in the photonics degree may be selected with advisor approval from out-
option should so note on their application form. side Electrical and Computer Engineering. Students in the
telecommunications and networking option must select at
Advanced Certificate for Post-Master’s Study least two from the computer science networking electives.
Students who desire an elective course typically select from
This certificate is awarded to students who complete six among the approved offerings of the Applied and Computa-
graduate-level courses beyond the master’s degree in an elec- tional Mathematics, Applied Physics, and Computer Science
trical and computer engineering discipline. The program is sections of this catalog. Students should consult with their
intended to add depth and/or breadth in the discipline of the advisor to discuss suitable electives from other programs.
student’s master’s degree, or a closely related one. All grades
for the six courses must be B or above. Note: Courses 615.441 Mathematical Methods for Phys-
After the review of student’s academic credentials by ics and Engineering, 615.442 Electromagnetics, 615.780
the admission committee and admittance to the Advanced Optical Detectors and Applications, and 625.743 Stochastic
Certificate for Post-Master’s Study program, each student is Optimization and Control are treated as electrical and com-
assigned an advisor with whom he or she jointly designs a puter engineering courses rather than as electives.
program tailored to individual educational goals. For convenient reference, the course offerings of the Master
Students must complete the Advanced Certificate for of Science in Electrical and Computer Engineering program
Post-Master’s Study within three years of the first enrollment are listed below in technology groupings. Although most stu-
in the program. dents choose from within one or two groupings, no particular
restrictions apply.
Electrical and Computer Engineering—Online
I. Telecommunications
There are numerous courses in the Electrical and Computer
Engineering program offered in a fully online format, and 525.408 Digital Telephony
more courses are continually being developed. This increases 525.414 Probability and Stochastic Processes
the flexibility of course offerings for students wishing to pur- for Engineers
sue studies in either the face-to-face or online format, or a 525.416 Communication Systems Engineering
combination of both. 525.418 Antenna Systems
90
525.420 Electromagnetic Transmission Systems 525.778 Design for Reliability, Testability, and
525.438 Introduction to Wireless Technology Quality Assurance
525.440 Satellite Communications Systems 525.786 Human Robotics Interaction
525.441 Computer and Data Communication
Networks I III. RF and Microwave Engineering
525.707 Error Control Coding 525.405 Intermediate Electromagnetics
525.708 Iterative Methods in Communications 525.418 Antenna Systems
Systems 525.420 Electromagnetic Transmission Systems
525.722 Wireless and Mobile Cellular 525.423 Principles of Microwave Circuits
Communications 525.448 Introduction to Radar Systems
Graduate Programs
525.723 Computer and Data Communication 525.484 Microwave Systems and Components
Networks II
525.736 Smart Antennas for Wireless
525.735 MIMO Wireless Communications
Communications
525.736 Smart Antennas for Wireless
525.738 Advanced Antenna Systems
Communications
525.754 Wireless Communication Circuits I
525.747 Speech Processing 525.755 Wireless Communication Circuits II
525.751 Software Radio for Wireless 525.771 Propagation of Radio Waves in the
Communications Atmosphere
525.754 Wireless Communication Circuits I 525.774 RF and Microwave Circuits I
525.755 Wireless Communication Circuits II 525.775 RF and Microwave Circuits II
525.759 Image Compression, Packet Video, and 525.779 RF Integrated Circuits
Video Processing 525.787 Microwave Monolithic Integrated Circuit
525.761 Wireless and Wireline Network Integration (MMIC) Design
525.768 Wireless Networks 525.788 Power Microwave Monolithic Integrated
525.771 Propagation of Radio Waves in the Circuit (MMIC) Design
Atmosphere 525.791 Microwave Communications Laboratory
525.772 Fiber-Optic Communication Systems 615.442 Electromagnetics
525.776 Information Theory
525.783 Spread-Spectrum Communications IV. Photonics
525.789 Digital Satellite Communications 525.413 Fourier Techniques in Optics
525.791 Microwave Communications Laboratory 525.425 Laser Fundamentals
525.793 Advanced Communication Systems 525.436 Optics and Photonics Laboratory
Note: Computer Science course electives accepted for the 525.491 Fundamentals of Photonics
telecommunications and networking option are listed on the 525.753 Laser Systems and Applications
Telecommunications and Networking page. 525.756 Optical Propagation, Sensing, and
Backgrounds
II. Computer Engineering 525.772 Fiber-Optic Communication Systems
525.410 Microprocessors for Robotic Systems 525.792 Electro-Optical Systems
525.412 Computer Architecture 525.796 Introduction to High-Speed Electronics
525.415 Microprocessor Systems and Optoelectronics
525.434 High-Speed Digital Design and Signal 525.797 Advanced Optics and Photonics Laboratory
Integrity
525.441 Computer and Data Communication Note: 525.801 and 525.802 Special Project courses can also be
Networks I used to allow students to pursue specialized interests in optics.
525.442 VHDL/FPGA Microprocessor Design
Electives appropriate to the photonics option:
525.712 Advanced Computer Architecture
615.471 Principles of Optics
Networks II 615.751 Modern Optics
525.742 System-on-a-Chip FPGA Design 615.778 Computer Optical Design
Laboratory 615.780 Optical Detectors and Applications
525.743 Embedded Systems Development 615.781 Quantum Information Processing
Laboratory 615.782 Optics and MATLAB
91
Note: 615.800 Applied Physics Project and 615.802 Direct- 525.446 DSP Hardware Lab
ed Studies in Applied Physics can also be used to allow the 525.448 Introduction to Radar Systems
student to pursue specialized interests in optics. 525.718 Multirate Signal Processing
525.721 Advanced Digital Signal Processing
V. Electronics and the Solid State
525.724 Introduction to Pattern Recognition
525.406 Electronic Materials 525.728 Detection and Estimation Theory
525.407 Introduction to Electronic Packaging 525.745 Applied Kalman Filtering
525.421 Introduction to Electronics and the 525.746 Image Engineering
Solid State I
525.747 Speech Processing
525.422 Introduction to Electronics and the
525.762 Signal Processing with Wavelets
Graduate Programs
Solid State II
525.780 Multidimensional Digital Signal Processing
525.424 Analog Electronic Circuit Design I
525.428 Introduction to Digital CMOS VLSI VII. Systems and Control
525.432 Analog Electronic Circuit Design II 525.409 Continuous Control Systems
525.705 Micropower VLSI System Design 525.414 Probability and Stochastic Processes for
525.713 Analog Integrated Circuit Design Engineers
525.725 Power Electronics 525.445 Modern Navigation Systems
525.794 Advanced Topics in VLSI Technology 525.466 Linear System Theory
525.763 Applied Nonlinear Systems
VI. Signal Processing
525.770 Intelligent Algorithms
525.419 Introduction to Digital Image and Video
525.777 Control System Design Methods
Processing
525.427 Digital Signal Processing
Engineering
525.430 Digital Signal Processing Lab
525.431 Adaptive Signal Processing
525.443 Real-Time Computer Vision
Course Descriptions
Please refer to the Course Schedule published each semester 525.202 Signals and Systems
for exact dates, times, locations, fees, and instructors. This course is intended to prepare students lacking an appro-
priate background for graduate study in electrical and com-
520.772 Advanced Integrated Circuits
puter engineering. Signal and system representations and
Study of devices, circuits, and design methodology for analog analysis tools in both continuous time and discrete time
computing systems, both MOS and bipolar. Students will use are covered. Linear time-invariant systems are defined and
CAD tools to design and test circuits fabricated through the analyzed. The Fourier transform, the Laplace transform, and
MOSIS service with special emphasis on bio-inspired inte- the z-transform are treated along with the sampling theorem.
grated sensors and sensory systems and on micropower inte- Finally, fundamental concepts in probability, statistics, and
grated circuits for biomedical devices and instrumentation. random processes are considered. The course does not count
Andreou, Etienne-Cummings toward the Master of Science in Electrical and Computer
Engineering degree.
525.201 Circuits, Devices, and Fields
Staff
This course is intended to prepare students lacking an appro-
priate background for graduate study in electrical and com- 525.405 Intermediate Electromagnetics
puter engineering. Fundamental mathematical concepts This course provides a background in engineering electro-
including calculus, differential equations, and linear algebra magnetics required for more advanced courses in the field.
are reviewed. Circuit theory for linear and non-linear devices Topics include vector calculus, Poisson’s and Laplace’s equa-
and components is covered. An introduction to electricity tions, Vector potentials, Green’s functions, magnetostatics,
and magnetism is presented along with basic wave propaga- magnetic and dielectric materials, Maxwell’s equations, plane
tion theory. Finally, Boolean algebra is studied with applica- wave propagation and polarization, reflection and refrac-
tions to digital circuit design and analysis. The course does tion at a plane boundary, frequency dependent susceptibility
not count toward the Master of Science in Electrical and functions, transmission lines, waveguides, and simple anten-
Computer Engineering degree. nas. Practical examples are used throughout the course.
Staff Thomas, Weiss
92
525.406 Electronic Materials 525.410 Microprocessors for Robotic Systems

Materials and the interfaces between them are the key ele- This course examines microprocessors as an integral part of
ments in determining the functioning of electronic devices robotic systems. Techniques required for successful incorpo-
and systems. This course develops the fundamental param- ration of embedded microprocessor technology are studied
eters of the basic solid material types and their relationships and applied to robotic systems. Students will use hardware
to electrical, thermal, mechanical, and optical properties. The in a laboratory setting and will develop software which uses
application of these materials to the design and fabrication features of the microprocessor at a low level to accomplish
of electronic components is described, including integrated the real-time performance necessary in robotic applications.
circuits, passive components, and electronic boards, modules, Topics will include microprocessor selection, real-time con-
and systems. straints, sensor interfacing, actuator control, and system
Graduate Programs
Prerequisites: An undergraduate degree in engineering, phys- design considerations.
ics, or materials science; familiarity with materials structures Prerequisites: Experience with C programming and a course
and electronic devices. in digital systems or computer architecture.
Charles Sawyer
525.407 Introduction to Electronic Packaging 525.412 Computer Architecture

Topics include fundamentals of electronic packaging engi- This course focuses on digital hardware design for all major
neering and basic concepts in thermal, mechanical, electri- components of a modern, reduced-instruction-set computer.
cal, and environmental management of modern electronic Topics covered include instruction set architecture; address-
systems. Emphasis is on high-frequency (and high-speed) ing modes; register-transfer notation; control circuitry; pipe-
package performance and its achievement through the use lining with hazard control; circuits to support interrupts and
of advanced analytical tools, proper materials selection, and other exceptions; microprogramming; computer addition
efficient computer-aided design. Packaging topics include and subtraction circuits using unsigned, two’s-complement,
die and lead attachment, substrates, hybrids, surface-mount and excess notation; circuits to support multiplication using
technology, chip and board environmental protection, con- Robertson’s and Booth’s algorithms; circuits for implement-
nectors, harnesses, and printed and embedded wiring boards. ing restoring and non-restoring division; square-root circuits;
Prerequisite: An undergraduate degree in a scientific or engi- floating-point arithmetic notation and circuits; memory and
neering area, including familiarity with computer-aided cache memory systems; segmentation and paging; input/
design and engineering analysis methods for electronic cir- output interfaces; interrupt processing; direct memory access;
cuits and systems. and several common peripheral devices, including analog-to-
Charles digital and digital-to-analog converters.
Prerequisite: An undergraduate course in digital design.
525.408 Digital Telephony Cameron
This course examines communication techniques for the
transmission in voice of various channels. Topics include 525.413 Fourier Techniques in Optics
characteristics of speech and voice digitization; bandwidth In this course, the study of optics is presented from a perspec-
minimization and voice compression; digital modulation tive that uses the electrical engineer’s background in Fourier
and standards; transmission via fiber, terrestrial microwave, analysis and linear systems theory. Topics include scalar dif-
and satellite channels; cellular telephone architectures and fraction theory, Fourier transforming and imaging properties
networks; and digital switching architectures and networks. of lenses, spatial frequency analysis of optical systems, spatial
Prerequisite: Either an undergraduate degree in electrical engi- filtering and information processing, and holography. The
neering or 525.416 Communications Systems Engineering, class discusses applications of these concepts in non-destruc-
or consent of the instructor. tive evaluation of materials and structures, remote sensing,
Blodgett, Carmody and medical imaging.
Prerequisites: An undergraduate background in Fourier analy-
525.409 Continuous Control Systems sis and linear systems theory.
This course examines classical methods of analysis and design Young
of continuous control systems. Topics include system repre-
sentation by linear time invariant ordinary differential equa- 525.414 Probability and Stochastic Processes for
tions, performance measures, sensitivity, stability, root locus, Engineers
frequency domain techniques, and design methods. Several This course provides a foundation in the theory and applica-
practical examples are considered. MATLAB is used as a tions of probability and stochastic processes and an under-
computational tool. standing of the mathematical techniques relating to random
Prerequisites: Matrix theory and linear differential equations. processes in the areas of signal processing, detection, esti-
Palumbo mation, and communication. Topics include the axioms of
93
probability, random variables, and distribution functions, 525.419 Introduction to Digital Image and
functions and sequences of random variables; stochastic pro- Video Processing
cesses; and representations of random processes. This course provides an introduction to the basic concepts
Prerequisite: An undergraduate degree in electrical engineering. and techniques used in digital image and video processing.
Two-dimensional sampling and quantization are studied, and
Fry, R. Lee, Murphy, Ambrose the human visual system is reviewed. Edge detection and fea-
ture extraction algorithms are introduced for dimensionality
525.415 Microprocessor Systems reduction and feature classification. High-pass and bandpass
This course applies microprocessors as an integral element spatial filters are studied for use in image enhancement. Appli-
of system design. Techniques required for successful incor- cations are discussed in frame interpolation, filtering, coding,
Graduate Programs
poration of microprocessor technology are studied and used. noise suppression, and video compression. Some attention
Hardware and software design considerations that affect will be given to object recognition and classification, texture
product reliability, performance, and flexibility are covered. analysis in remote sensing, and stereo machine vision.
Students use hardware to gain familiarity with machine and Prerequisite: 525.427 Digital Signal Processing.
assembly language for software generation, interfacing to a Nasrabadi
microprocessor at the hardware level, and emulation to check
out system performance. 525.420 Electromagnetic Transmission Systems
This course examines transmission systems used to control
Prerequisites: Some experience in designing and building digi- the propagation of electromagnetic traveling waves with
tal electronic systems, some familiarity with C programming, principal focus emphasizing microwave and millimeter-wave
and a course in digital systems. applications. The course reviews standard transmission line
Stakem systems together with Maxwell’s equations and uses them
to establish basic system concepts such as reflection coef-
525.416 Communication Systems Engineering ficient, characteristic impedance, input impedance, imped-
In this course, students receive an introduction to the prin- ance matching, and standing wave ratio. Specific structures
ciples of communication systems engineering. Students are analyzed and described in terms of these basic concepts,
examine analog and digital communication including linear including coaxial, rectangular, and circular waveguides, sur-
(AM, DSB, SSB) and exponential (PM, FM) modulation, face waveguides, striplines, microstrips, coplanar waveguides,
sampling, noise and filtering effects, quantization effects, slotlines, and finlines. Actual transmission circuits are char-
detection error probabilities, and coherent and noncoherent acterized using the concepts and analytical tools developed.
communication techniques. Prerequisite: Students must have knowledge of material cov-
ered in 525.201 and 525.202 or taken a course on intermedi-
Prerequisites: A working knowledge of Fourier transforms, ate electromagnetics equivalent to 525.405.
linear systems, and probability theory.
Jablonski, Sequeira
Alexander, Costabile, R. Lee, Marble
525.421 Introduction to Electronics and the
Solid State I
525.418 Antenna Systems
Fundamentals of solid state and device physics are presented.
This course introduces and explains fundamental antenna Topics in solid state physics include crystal structure, lattice
concepts for both antennas and antenna arrays. Electromag- vibrations, dielectric and magnetic properties, band theory,
netic theory is reviewed and applied to antenna elements and transport phenomena. Concepts in quantum and statis-
such as dipoles, loops, aperture antennas, as well as antenna tical mechanics are also included. Basic semiconductor device
arrays. Antenna analysis is presented from a circuit theory operation is described with emphasis on the p-n junction.
point of view to highlight concepts such as reciprocity and
Prerequisite: An undergraduate degree in electrical engineer-
the implications for transmit and receive radiation patterns.
ing or the equivalent.
The importance of two-dimensional Fourier transforms is
explained and applied to aperture antennas. Basic array con- Charles
straints are examined through case studies of uniform, bino- 525.422 Introduction to Electronics and the
mial, and general amplitude distributions. The concept of Solid State II
beam squint is explained through examination of constant- This course reviews the fundamentals of device physics and
phase versus constant-time phase shifters. The Rotman lens is electronics. Topics in device electronics include bipolar and
discussed as an example of a common beamformer. The class MOS transistors, Schottky barriers, transferred electron and
concludes with an explanation of antenna measurements. tunnel devices, semiconductor lasers, and solar cells. Concepts
Prerequisite: 525.405 Intermediate Electromagnetics or in device structure, modeling, and performance are described.
equivalent. Prerequisite: 525.421 Introduction to Electronics and the
Roddewig, Weiss Solid State I or approval of the instructor.
Charles
94
525.423 Principles of Microwave Circuits 525.428 Introduction to Digital CMOS VLSI

This course addresses foundational microwave circuit con- The objective of this course is to familiarize the student with
cepts and engineering fundamentals. Topics include electro- the process of implementing a digital system as a full custom,
magnetics leading to wave propagation and generation, the integrated circuit. Upon completion, the student will be capa-
transmission line, and impedance/admittance transformation ble of completing skills to perform basic VLSI design from
and matching. Mapping and transformation are presented circuit concept to mask layout and simulation. Students will
in the development of the Smith Chart. The Smith Chart have the opportunity to have their projects fabricated at no
is used to perform passive microwave circuit design. Micro- cost through the MOSIS educational program. Topics include
wave networks and s-matrix are presented; Mason’s rules is device fabrication, mask layout, introductory MOSFET phys-
introduced. Circuits are physically designed using microstrip ics, standard CMOS logic design, hierarchical IC design, and
Graduate Programs
concepts, taking into consideration materials properties, con- circuit simulation. Students will design, simulate, and do
nectors, and other components. mask level layout of a circuit using a modern CMOS process.
Abita
Prerequisite: A course in digital design.
525.424 Analog Electronic Circuit Design I Martin
This course examines the use of passive and active com-
ponents to perform practical electronic functions. Simple 525.430 Digital Signal Processing Lab
circuits are designed and evaluated emphasizing the charac-
This course builds on the theory of digital signal processing.
teristics and tolerances of actual components. Devices stud-
Opportunities are provided to work on specific applications
ied include diodes and bipolar and field effect transistors.
of digital signal processing involving filtering, de-convolu-
Circuit designs are studied in relation to the device charac-
tion, spectral estimation, and a variety of other techniques.
teristics, including small signal amplifiers and oscillators, and
Students may also suggest their own laboratory topics. Labo-
linear power supply and amplifier circuits. SPICE modeling
ratory work involves developing signal processing systems
is available to students.
on a personal computer and using them with both real and
Prerequisites: Undergraduate courses in electricity and mag- simulated data. Questions related to hardware realizations
netism, circuit theory, and linear analysis. are also considered.
Baisden, Darlington
Prerequisite: 525.427 Digital Signal Processing.
525.425 Laser Fundamentals Fry
This course reviews electromagnetic theory and introduces
the interaction of light and matter with an emphasis on 525.431 Adaptive Signal Processing
laser theory. A fundamental background is established, nec-
This course examines adaptive algorithms (LMS, sequential
essary for advanced courses in optical engineering. Topics
regression, random search, etc.) and structures (filters, con-
include Maxwell’s equations, total power law, introduction
trol systems, interference cancelers), and properties and uses
to spectroscopy, classical oscillator model, Kramers-Kroenig
of performance surfaces. Adaptive systems are implemented
relations, line broadening mechanisms, rate equations, laser
as part of the course work. Problem exercises and a term
pumping and population inversion, laser amplification, laser
project require computer use.
resonator design, and Gaussian beam propagation.
Prerequisite: 525.405 Intermediate Electromagnetics or Prerequisite: 525.427 Digital Signal Processing. Some knowl-
equivalent. edge of probability is helpful.
Thomas Costabile
525.427 Digital Signal Processing 525.432 Analog Electronic Circuit Design II

Basic concepts of discrete linear shift-invariant systems are
This course extends the fundamental concepts of practical
emphasized, including sampling, quantization, and recon-
electronic circuit design developed in the course 525.424
struction of analog signals. Extensive coverage of the Z-trans-
Analog Electronic Circuit Design I. The general feedback
form, discrete Fourier transform, and fast Fourier transform
method is reviewed. Students examine a wide range of devices,
is given. An overview of digital filter design includes dis-
including operational amplifiers, A/D and D/A converters,
cussion of impulse invariance, bilinear transform, and win-
switching regulators and power supplies. Applications include
dow functions. Filter structures, finite length register effects,
low noise amplification, sensor conditioning, nonlinear trans-
roundoff noise, and limit cycles in discrete-time digital sys-
fer functions and analog computation, and power control.
tems are also covered.
Prerequisites: A working knowledge of Fourier and Laplace Prerequisite: 525.424 Analog Electronic Circuit Design I or
transforms. permission of the instructor.
Ambrose, C. L. Edwards, M. L. Edwards Baisden, Darlington
95
525.434 High-Speed Digital Design and Signal orbiting and deep space spacecraft. Topics include satellite
Integrity orbits, link analysis, antenna and payload design, interfer-
This course will discuss the principles of signal integrity and ence and propagation effects, modulation techniques, cod-
its applications in the proper design of high-speed digital ing, multiple access, and Earth station design.
circuits. Topics include the following: the definition and Prerequisite: 525.416 Communication Systems Engineering.
fundamentals of signal integrity, the fallacies believed by DeBoy, Carmody
digital designers, ground/power planes, PCI series termi-
nation resistors, simulation software and signal integrity, 525.441 Computer and Data Communication
ground bounce calculations, power bus noise, high-speed Networks I
return signals, transmission lines, gate delay, differential pair This course provides a comprehensive overview of comput-
Graduate Programs
skew, bypass capacitor layout, cable shield grounding, power- er and data communication networks, with emphasis on
ground source impedance, open drain lines, series termi- analysis and modeling. Basic communications principles are
nation, equivalent circuit source impedance, terminators, reviewed as they pertain to communication networks. Net-
crosstalk and SSO noise, gigabit ethernet specification, and working principles covered include layered network architec-
short transmission line model. ture, data encoding, static and multiaccess channel allocation
Prerequisites: Thorough knowledge of digital design and basic methods (for LAN and WAN), ARQ retransmission strate-
circuit theory. gies, framing, routing strategies, transport protocols, and
Eaton emerging high-speed networks.
Prerequisites: 525.414 Probability and Stochastic Processes for
525.436 Optics and Photonics Laboratory Engineers and 525.416 Communication Systems Engineer-
The objective of this course is to develop laboratory skills in ing, or equivalents.
optics and photonics by performing detailed experimental Hanson, Nasrabadi
measurements and comparing these measurements to theo-
retical models. Error analysis is used throughout to empha- 525.442 VHDL/FPGA Microprocessor Design
size measurement accuracy. A partial list of topics include: This lab-oriented course covers the design of digital systems
geometric optics, optical properties of materials, diffraction, using VHSIC Hardware Description Language (VHDL)
interference, polarization, non-linear optics, fiber optics, and its implementation in Field Programmable Gate Arrays
non-linear fiber optics, optical detectors (pin, APD, PMT), (FPGAs). This technology allows cost-effective unique system
optical sources (lasers, blackbodies, LED’s), phase and ampli- realizations by enabling design reuse and simplifying custom
tude modulators, lidar, fiber-optic communications, IR radi- circuit design. The design tools are first introduced and used
ometry. The specific experiments will depend on hardware to implement basic circuits. More advanced designs follow,
availability and student interest. focusing on integrating the FPGA with external peripher-
Prerequisite: 525.491 Fundamentals of Photonics or 615.751 als, simple signal processing applications, utilizing soft-core
Modern Optics or equivalent. processors, and using intellectual property (IP) cores. Projects
Sova, Terry will be assigned for course evaluation. Individual projects will
be encouraged.
525.438 Introduction to Wireless Technology Prerequisite: 525.415 Microprocessor Systems is suggested
This course introduces students to the modern technology but not required, as well as an understanding of digital logic
involved with commercial wireless communications systems fundamentals.
such as digital cellular, personal communications systems Hourani, Meitzler
(PCS), wireless local area networks (WLAN), code division
multiple access (CDMA) systems, and other topics. Various 525.443 Real-Time Computer Vision
multiple access methods and signal formats are considered. This course introduces students to real-time computer vision
Hardware implementations of system components are pre- through intensive use of the OpenCV open source computer
sented and analyzed. Modulation and demodulation archi- vision framework. Students in the course will learn to quickly
tectures are introduced and modeled using PC-based tools. build applications that enable computers to “see” and make
Prerequisites: An undergraduate degree in electrical engineer- decisions based on the video stream input from a camera.
ing or the equivalent. Experience with MATLAB and Simu- By the end of the class, the students will be able to build a
link will be helpful. real time system performing face detection and understand
Roddewig its implementation from in-class laboratory exercises. Top-
ics include: camera models and camera calibration; Fourier
525.440 Satellite Communications Systems analysis and image filtering; edge, line and contour detection;
This course presents the fundamentals of satellite commu- Hough transforms; segmentation; optical flow, tracking, and
nications link design and provides an overview of practical particle filters; elements of machine learning and object rec-
considerations. Existing systems are described and analyzed, ognition, and face detection. Students will be exposed to the
including direct broadcast satellites, VSAT links, and Earth- mathematical tools that are most useful in the implementation
96
of image processing and computer vision algorithms, from 525.466 Linear System Theory
linear algebra, probability theory, and optimization theory. This course covers the structure and properties of linear dynam-
Prerequisites: Knowledge of C or C++. Recommended prior ic systems with an emphasis on the single-input, single-output
exposure to probability theory, linear algebra, optimization case. Topics include the notion of state-space, state variable
techniques, and image processing. equations, review of matrix theory, linear vector spaces, eigen-
values and eigenvectors, the state transition matrix and solution
Burlina, DeMenthon of linear differential equations, internal and external system
descriptions, properties of controllability and observability and
525.445 Modern Navigation Systems their applications to minimal realizations, state-feedback con-
This course explores the use of satellite, terrestrial, celestial, trollers, asymptotic observers, and compensator design using
Graduate Programs
radio, magnetic, and inertial systems for the real-time deter- state-space and transfer function methods. An introduction to
mination of position, velocity, acceleration, and attitude. Par- multi-input, multi-output systems is also included, as well as
ticular emphasis is on the historical importance of navigation the solution and properties of time-varying systems.
systems; avionics navigation systems for high performance Prerequisites: Courses in matrix theory and linear differential
aircraft; the Global Positioning System; the relationships equations.
between navigation, cartography, surveying, and astronomy; Pue
and emerging trends for integrating various navigation tech-
niques into single, tightly coupled systems. 525.484 Microwave Systems and Components
This course deals with the practical aspects of microwave
Jablonski
systems and components. An overview of radar systems
(including the effects of both standoff and escort jamming
525.446 DSP Hardware Lab environments) is followed by an introduction to communica-
This course develops expertise and insight into the develop- tion systems. The majority of the course treats the linear and
ment of DSP processor solutions to practical engineering nonlinear characteristics of individual components and their
problems through hands-on experience. Structured exercises relation to system performance. Amplifiers, mixers, anten-
using DSP hardware are provided and used by the student to nas, filters, and frequency sources are studied, as well as their
gain practical experience with basic DSP theory and opera- interactions in cascade. Homework problems for each class
tions. Course focus is on real-time, floating-point applica- reinforce the lecture material and may require use of com-
tions. This course is intended for engineers having EE or puter-aided design software provided at the Dorsey Center.
other technical backgrounds who desire to obtain practical Prerequisite: An undergraduate degree in electrical engineer-
experience and insight into the development of solutions to ing or equivalent.
DSP problems requiring specialized DSP architectures. Kaul, Marks, Wilson
Prerequisites: 525.427 Digital Signal Processing and C pro- 525.491 Fundamentals of Photonics
gramming experience.
This course provides the essential background in photonics
Haber, Wenstrand necessary to understand modern photonic and fiber-optic
systems. A fundamental background is established, necessary
525.448 Introduction to Radar Systems for advanced studies as well. Topics include electromagnetic
This class introduces the student to the fundamentals of radar optics, polarization and crystal optics, guided-wave optics,
system engineering. The radar range equation in its many fiber optics, photons in semiconductors, semiconductors
forms is developed and applied to different situations. Radar in photon sources and detectors, nonlinear optics, electro-
transmitters, antennas, and receivers are covered. The con- optics, and acousto-optics.
cepts of matched filtering, pulse compression, and the radar Prerequisite: An undergraduate course in electromagnetic
ambiguity function are introduced, and the fundamentals of theory.
radar target detection in a noise background are discussed. Sova
Target radar cross-section models are addressed, as well as the
525.705 Micropower VLSI System Design
effects of the operating environment, including propagation
This course considers micropower circuits with emphasis at
and clutter. MTI and pulsed Doppler processing and perfor-
the level of system integration. Topics include mixed digital
mance are addressed. Range, angle, and Doppler resolution/
and analog/digital components on a single chip, A/D and
accuracy, as well as fundamental tracking concepts, will also
D/A converters, design for testability, and fault tolerance. The
be discussed.
course requires a final project involving a small system that is
Prerequisites: 525.414 Probability and Stochastic Processes for fabricated through MOSIS, as well as laboratory experiments
Engineers, 525.427 Digital Signal Processing, and a working on previously fabricated circuits and small systems.
knowledge of electromagnetics. Familiarity with MATLAB. Prerequisite: 525.713 Micropower Integrated Circuit Design.
Farthing, Griffith, Lum Staff
97
525.707 Error Control Coding 525.713 Analog Integrated Circuit Design

This course presents error-control coding with a view toward This course focuses on CMOS analog integrated circuits.
applying it as part of the overall design of a data commu- Topics include devices, subthreshold operation, simple
nication or storage and retrieval system. Block, trellis, and amplifiers, reference circuits, and differential amplifiers.
turbo codes and associated decoding techniques are covered. Voltage and current mode techniques are introduced for the
Topics include system models, generator and parity check implementation of analog signal processing. Circuit analysis
matrix representation of block codes, general decoding prin- methodologies are stressed and complemented with design
ciples, cyclic codes, an introduction to abstract algebra and tools for layout, simulation, and verification. A final project
Galois fields, BCH and Reed-Solomon codes, analytical and involves the design of a small circuit, with the possibility of
graphical representation of convolutional codes, performance fabrication through MOSIS.
Graduate Programs
bounds, examples of good codes, Viterbi decoding, BCJR Prerequisites: 525.424 Analog Electronic Circuit Design I or
algorithm, turbo codes, and turbo code decoding. equivalent, and 525.428 Introduction to CMOS VLSI.
Prerequisites: Background in linear algebra, such as 625.409 Martin
Matrix Theory; in probability, such as 525.414 Probabil-
ity and Stochastic Processes for Engineers; and in digital 525.718 Multirate Signal Processing
communications, such as 525.416 Communication Systems Multirate signal processing techniques find applications
Engineering. Familiarity with MATLAB or similar program- in areas such as communication systems, signal compres-
ming capability. sion, and sub-band signal processing. This course provides
Hammons an in-depth treatment of both the theoretical and practi-
cal aspects of multirate signal processing. The course begins
525.708 Iterative Methods in Communications with a review of discrete-time systems and the design of
Systems digital filters. Sample rate conversion is covered, and efficient
implementations using polyphase filters and cascade integra-
Generalization of the iterative decoding techniques invented
tor comb (CIC) filters are considered. The latter part of the
for turbo codes has led to the theory of factor graphs as a gen-
course treats filter bank theory and implementation, includ-
eral model for receiver processing. This course will develop
ing quadrature mirror, conjugate quadrature, discrete Fourier
the general theory of factor graphs and explore several of its
transform, and cosine modulated filter banks along with their
important applications. Illustrations of the descriptive power
relationship to transmultiplexers.
of this theory include the development of high performance
decoding algorithms for classical and modern forward error Prerequisites: 525.427 Digital Signal Processing or equivalent
correction codes (trellis codes, parallel concatenated codes, and working knowledge of MATLAB.
serially concatenated codes, low-density parity check codes). Jennison
Additional applications include coded modulation systems in
which the error correction coding and modulation are deeply 525.721 Advanced Digital Signal Processing
intertwined as well as a new understanding of equalization The fundamentals of discrete-time statistical signal process-
techniques from the factor graph perspective. ing are presented in this course. Topics include estimation
Prerequisites: Background in linear algebra, such as 625.409 theory, optimal linear filter theory, recursive methods for
Matrix Theory; in probability, such as 525.414 Probabil- optimal filters, classical and modern spectrum analysis, adap-
ity and Stochastic Processes for Engineers. Familiarity with tive filtering, as well as the singular value decomposition and
MATLAB or similar programming capability. its applications. Basic concepts of super-resolution methods
are described.
Hammons
Prerequisites: 525.414 Probability and Stochastic Processes for
525.712 Advanced Computer Architecture
Engineers, 525.427 Digital Signal Processing, and the basics
of linear algebra. Familiarity with a scientific programming
This course covers topics essential to modern superscalar language such as MATLAB.
processor design. A review of pipelined processor design and
hierarchical memory design is followed by advanced top- Najmi, Rodriguez
ics including the identification of parallelism in processes;
525.722 Wireless and Mobile Cellular Communications
multiple diversified functional units in a pipelined processor;
static, dynamic, and hybrid branch prediction techniques; In this course, students examine fundamental concepts of
the Tomasulo algorithm for efficient resolution of true data mobile cellular communications and specifics of current and
dependencies; advanced data flow techniques with and with- proposed U.S. cellular systems. Topics include frequency
out speculative execution; multiprocessor systems; and mul- reuse; call processing; propagation loss; multipath fading and
tithreaded processors. methods of reducing fades; error correction requirements
and techniques; modulation methods; FDMA, TDMA, and
Prerequisites: 525.412 Computer Architecture or equivalent. CDMA techniques; microcell issues; mobile satellite systems;
Cameron and IMT-2000.
98
Prerequisites: 525.414 Probability and Stochastic Processes converter performance, and modeling of the converter. The
for Engineers or equivalent and 525.416 Communication complete process of converter design and implementation
Systems Engineering. is presented including requirement specification and testing
Zuelsdorf verification needed to evaluate the converter performance
such as efficiency, regulation, line rejection, EMI/EMC mea-
525.723 Computer and Data Communication surements, and stability measurements. Two labs that will
Networks II give the student hands-on experience with design and testing
This course emphasizes the mathematical analysis of commu- of a typical DC to DC converter are part of the course.
nication networks. Queuing theory and its applications are Prerequisite: 525.424 Analog Electronic Circuit Design I or
covered extensively, including the topics of M/M/1 systems, equivalent.
Graduate Programs
M/G/1 systems, Burke’s theorem, and Jackson’s theorem. Katsis
Multiaccess communication is discussed, including the top-
ics of Aloha systems and packet radio networks. Students 525.728 Detection and Estimation Theory
also explore network routing including the Bellman-Ford Both hypothesis testing and estimation theory are covered.
algorithm, Dijkstra’s algorithm, and optimal routing. The course starts with a review of probability distribu-
Prerequisite: 525.441 Computer and Data Communication tions, multivariate Gaussians, and the central limit theo-
Networks I. rem. Hypothesis testing areas include simple and composite
Hanson hypotheses and binary and multiple hypotheses. In esti-
mation theory, maximum likelihood estimates and Bayes
525.724 Introduction to Pattern Recognition estimates are discussed. Practical problems in radar and com-
This course focuses on the underlying principles of pattern munications are used as examples throughout the course.
recognition and on the methods used to develop and deploy Prerequisite: 525.414 Probability and Stochastic Processes for
applications in the real world. Emphasis is placed on the Engineers or equivalent.
pattern recognition application development process, which Banerjee, Marble
includes problem identification, concept development, algo-
rithm selection, system integration, and test and validation. 525.735 MIMO Wireless Communications
Topics to be covered include the basic concepts of pattern This course presents the fundamental concepts and tech-
detection and recognition, anomaly detection, feature extrac- niques of multiple-input multiple-output (MIMO) com-
tion, data mining, supervised and unsupervised analysis, and munications over wireless communication channels. MIMO
data fusion. Recognition algorithms covered will include communications, which involve the use of multiple anten-
statistical pattern classifiers, clustering, artificial neural net- nas at the transmitter and receiver, employ the use of signal
works, support vector machines, rule-based algorithms, fuzzy processing techniques to enhance the reliability and capacity
logic, genetic algorithms, and others. Classroom examples, of communication systems without increasing the required
homework assignments, and term project topics are drawn spectral bandwidth. MIMO techniques are currently used or
from multiple, real-world applications whose data provide a planned in many commercial and military communications
realistic environment within which prototypes are generated systems. Topics include the derivation and application of
and tested by the student. the theoretical MIMO communications capacity formula;
Prerequisite: 525.414 Probability and Stochastic Processes for channel fading and multipath propagation; the concepts of
Engineers or equivalent. A course in digital signal or image transmit and receive space diversity; space-time block coding,
processing is recommended, such as 525.427 Digital Sig- with a special emphasis on Alamouti coding; space-time trel-
nal Processing, 525.419 Introduction to Digital Image and lis coding; spatial multiplexing; and fundamentals of OFDM
Video Processing, 525.443 Real-Time Computer Vision, or modulation and its relation to MIMO communications.
525.746 Image Engineering. Examples and applications will be presented as well as related
Baumgart MATLAB homework assignments.
Prerequisites: 525.416 Communication Systems Engineering;
525.725 Power Electronics 525.414 Probability and Stochastic Processes for Engineers,
This course covers the design and analysis of DC to DC or the equivalent. In addition, a working knowledge of MAT-
switching converters. Topics include topology selection for LAB is required.
various applications, steady state operation including contin- Hampton
uous verses discontinuous operation, fundamentals of control
loop design including both voltage mode and current mode 525.736 Smart Antennas for Wireless
control, fundamentals of magnetic design including how to Communications
minimize losses, input and output filter design, pulse-width The theory and implementation of smart antennas is explored
modulation chip selection, diode and transistor part selec- including electromagnetic principles, array signal processing,
tion and the associated effects of part non-idealities on the random processes, channel characterization, spectral estima-
99
tion, and adaptive algorithms. The fundamentals of elec- 525.743 Embedded Systems Development
tromagnetics, antenna elements, antenna arrays, sidelobe Laboratory
cancellation, and adaptive antennas methods will be cov- This project-based laboratory course involves the develop-
ered. MATLAB will be used for instruction, simulation, and ment of embedded system prototypes. Typical projects con-
homework. tain combinations of the following components: transducers,
Prerequisites: 525.414 Probability and Stochastic Processes, analog front ends, microcontrollers and processors, CPLDs,
525.418 Antenna Systems. Knowledge of MATLAB will be FPGAs, digital signal processors, electrical interfaces, wired
helpful. or wireless connectivity, printed circuit boards required for
integration and test, and software/firmware modules needed
Roddewig to operate designed system. The laboratory activity is a back-
Graduate Programs
drop used to teach key aspects of the development process

525.738 Advanced Antenna Systems such as: documentation, realistic use of requirements, design
This course is designed to follow 525.418 Antenna Systems. partition, integration strategy, interface design, peer review,
Advanced techniques needed to analyze antenna systems are risk mitigation, testability, extensibility, distributed develop-
studied in detail. Fourier transforms are reviewed and applied ment teams, and design strategies to accommodate available
to antenna theory and array distributions. The method of resources. Software development topics such as source con-
moments is studied and used to solve basic integral equations trol, testability, and deployment will also be covered. Instruc-
employing different basis functions. Green’s functions for tors will select the design topic for each semester and students
patch antennas are formulated in terms of Sommerfeld-like will focus their effort on hardware, software, or both, based
integrals. Techniques such as saddle-point integration are upon their preference and instructor approval.
presented. Topics addressed include computational electro- Prerequisites: An undergraduate degree in electrical or com-
magnetics, Leaky and surface waves, mutual coupling, and puter engineering or computer science, 525.412 Computer
Floquet modes. Students should be familiar with complex Architecture, and working knowledge of C or C++ or instruc-
variables (contour integration), Fourier transforms, and elec- tor’s approval.
tromagnetics from undergraduate studies. Houser
Prerequisite: 525.418 Antenna Systems.
525.745 Applied Kalman Filtering
Weiss
Theory, analysis, and practical design and implementation of
525.742 System-on-a-Chip FPGA Design Laboratory Kalman filters are covered, along with example applications
to real-world problems. Topics include a review of random
This lab-oriented course will focus on the design of large scale processes and linear system theory; Kalman filter derivations;
system-on-a-chip (SOC) solutions within field-programma- divergence analysis; numerically robust forms; suboptimal
ble gate arrays (FPGAs). Modern FPGA densities and com- filters and error budget analysis; prediction and smooth-
mercially available cores enable a single developer to design ing; cascaded, decentralized, and federated filters; linearized,
highly complex systems within a single FPGA. This class will extended, second order, and adaptive filters; and case studies
provide the student with the ability to design and debug these in GPS, inertial navigation, and ballistic missile tracking.
inherently complex systems. Topics will include high speed
digital signal processing, embedded processor architectures, Prerequisites: 525.414 Probability and Stochastic Processes for
customization of soft-core processors, interfacing with audio Engineers and 525.466 Linear System Theory or equivalents.
and video sensors, communications interfaces, and network- Knowledge of MATLAB (or equivalent software package).
ing. The optimum division of algorithms between hardware Samsundar, Watkins
and software will be discussed, particularly the ability to
accelerate software algorithms by building custom hardware. 525.746 Image Engineering
Many labs will center around a common architecture which The overall goal of the course is to provide the student with a
includes signal processing algorithms in the FPGA fabric, unified view of images, concentrating on image creation, and
controlled by an embedded processor that provides user image processing. Optical, photographic, analog, and digital
interfaces and network communication. The first section of image systems are highlighted. Topics include image input,
the course will be spent experimenting with different build- output, and processing devices; visual perception; video sys-
ing blocks for constructing SOCs. Students will spend later tems; and fundamentals of image enhancement and restora-
class sessions working in teams on self-directed SOC design tion. Coding, filtering, and transform techniques are covered,
projects. Industry standard tools will be used. with applications to remote sensing and biomedical problems.
Prerequisites: 525.442 VHDL/FPGA Microprocessor Design Prerequisites: 525.427 Digital Signal Processing or equivalent
and familiarity with C programming. and knowledge of linear systems.
Haber, Wenstrand Bankman, Miller
100
525.747 Speech Processing Prerequisite: 525.416 Communication Systems Engineering

This course emphasizes processing of the human speech or 525.484 Microwave Systems and Components or permis-
waveform, primarily using digital techniques. Theory of sion of the instructor.
speech production and speech perception as related to signals Houser, Kaul, Tobin
in time and frequency-domains is covered, as well as the mea-
surement of model parameters, short-time Fourier spectrum, 525.755 Wireless Communication Circuits II
and linear predictor coefficients. Speech coding, recognition, This is a lab-based course in which students will design,
speech synthesis, and speaker identification are discussed. build, and test a communications-related system. The nature
Application areas include telecommunications telephony, and extent of the project will be negotiated between the stu-
Internet VOIP, and man-machine interfaces. Considerations dent and instructors during the first week of class. Candidate
Graduate Programs
for embedded realization of the speech processing system projects include spread spectrum systems, PSK modulators
will be covered as time permits. Several application-oriented and demodulators, m-ary FSK modulators and demodula-
software projects will be required. tors, and others. Students will be expected to procure any
Prerequisites: 525.427 Digital Signal Processing and 525.414 unusual components they require for their project (i.e., spe-
Probability and Stochastic Processes for Engineers. Back- cialized ICs, unusual development systems, etc.).
ground in linear algebra and MATLAB is helpful. Prerequisites: 525.754 Wireless Communication Circuits
Carmody I or permission of the instructor. Students are required to
assemble circuitry outside the course hours, thus reserving
525.751 Software Radio for Wireless Communications class time for debugging, testing, and instructor interaction.
This course will explore modern software radio technology Houser, Kaul, Tobin
and implementation. Digital signal processors and field-pro-
grammable gate arrays have traditional uses in radar and digi- 525.756 Optical Propagation, Sensing, and
tal signal and system processing. However, with advances in Backgrounds
design they have started to be employed as key components This course presents a unified perspective on optical propaga-
in software radios. We will explore concepts and techniques tion in linear media. A basic background is established using
that are key to implementing traditionally analog processing electromagnetic theory, spectroscopy, and quantum theory.
functions and ASICs in easily reconfigured digital logic. Stu- Properties of the optical field and propagation media (gases,
dents will design software radio functions and algorithms and liquids, and solids) are developed, leading to basic expressions
program FPGA development kits using industry standard describing their interaction. The absorption line strength
tools and techniques. A semester project involving software and shape and Rayleigh scattering are derived and applied
GPS radio or other topics is required. to atmospheric transmission, optical window materials, and
Prerequisites: 525.438 Introduction to Wireless Technology propagation in water-based liquids. A survey of experimental
or 525.416 Communication Systems Engineering; 525.427 techniques and apparatus is also part of the course. Applica-
Digital Signal Processing; and working knowledge of MAT- tions are presented for each type of medium, emphasizing
LAB and Simulink. remote sensing techniques and background noise. Computer
Chew, Roddewig codes such as LOWTRAN, FASCODE, and OPTIMATR
are discussed.
525.753 Laser Systems and Applications Prerequisites: Undergraduate courses on electromagnetic the-
This course provides a comprehensive treatment of the gen- ory and elementary quantum mechanics. A course on Fourier
eration of laser light, its properties, and applications. Topics optics is helpful.
include specific laser systems and pumping mechanisms, Thomas
nonlinear optics, temporal and spatial coherence, guided
beams, interferometric and holographic measurements, and 525.759 Image Compression, Packet Video, and
remote sensing. Video Processing
Prerequisite: 525.425 Laser Fundamentals. This course provides an introduction to the basic concepts
Bankman, Thomas and techniques used for the compression of digital images
and video. Video compression requirements, algorithm com-
525.754 Wireless Communication Circuits I ponents, and ISO Standard video processing algorithms are
In this course, students examine modulator and demodulator studied. Image compression components that are used in
circuits used in communication and radar systems. A combi- video compression methods are also identified. Since image
nation of lectures and laboratory experiments addresses the and video compression is now integrated in many commer-
analysis, design, fabrication, and test of common circuits. cial and experimental video processing methods, knowledge
Signal formats considered include phase and frequency shift of the compression methods effect on image and video qual-
keying, pseudo-random codes, and the linear modulations ity are factors driving the usability of that data in many data
used in analog systems. exploitation activities. Topics to be covered include intro-
101
duction to video systems, Fourier analysis of video signals, mathematical preliminaries; equilibrium points of nonlinear
properties of the human visual system, motion estimation, systems; phase plane analysis and limit cycles; stability defi-
basic video compression techniques, video communication nitions for nonlinear systems; Lyapunov’s indirect and direct
standards, and error control in video communications. Video methods; stability of autonomous and non-autonomous sys-
processing applications that rely on compression algorithms tems; describing function analysis; nonlinear control design
is also studied. A mini-project is required. including sliding-mode, adaptive, and nonlinear robust con-
Prerequisites: 525.427 Digital Signal Processing. trol; and applications of nonlinear control design.
Beser Prerequisites: 525.409 Continuous Control Systems or
equivalent.
525.761 Wireless and Wireline Network Integration Ambrose
Graduate Programs
This course investigates the integration of wireless and wire-

525.768 Wireless Networks
line networks into seamless networks. The current telecom-
munications environment in the U.S. is first discussed, This is a hands-on course that integrates teaching of con-
including the state of technology and regulations as they cepts in wireless LANs as well as offering students, in an
apply to the wireless and wireline hybrid environment. Then integrated lab environment, the ability to conduct laboratory
each type of these hybrid networks is discussed, including experiments and design projects that cover a broad spec-
its components, network services, architecture, and possible trum of issues in wireless LANs. The course will describe
evolution, as well as important concepts that support the evo- the characteristics and operation of contemporary wireless
lution of networks. The integration of wired network advance network technologies such as the IEEE 802.11 and 802.11s
intelligence, wireless network mobility, and long distance wireless LANs and Bluetooth wireless PANs. Laboratory
capabilities are shown to provide many new combinations of experiments and design projects include MANET routing
wired and wireless services to users. protocols, infrastructure and MANET security, deploying
hotspots, and intelligent wireless LANs. The course will also
Prerequisite: 525.408 Digital Telephony or 525.416 Commu-
introduce tools and techniques to monitor, measure, and
nication Systems Engineering, or permission of instructor.
characterize the performance of wireless LANs as well as the
R. Lee use of network simulation tools to model and evaluate the
performance of MANETs.
525.762 Signal Processing with Wavelets
Prerequisite: 525.441 Computer and Data Communication
This course covers the mathematical framework for wavelets Networks I or 605.471 Principles of Data Communications
with particular emphasis on algorithms and implementation Networks.
of the algorithms. Concepts of frames, orthogonal bases,
Refaei
and reproducing kernel Hilbert spaces are introduced first,
followed by an introduction to linear systems for contin- 525.770 Intelligent Algorithms
uous-time and discrete-time. Next, time, frequency, and Intelligent algorithms are, in many cases, practical alternative
scale localizing transforms are introduced, including the techniques for tackling and solving a variety of challenging
windowed Fourier transform and the continuous wavelet engineering problems. For example, Fuzzy Control tech-
transform (CWT). Discretized CWT are studied next in the niques can be utilized to construct nonlinear controllers via
forms of the Haar and the Shannon orthogonal wavelet sys- the use of heuristic information when information of the
tems. General multiresolution analysis is introduced and the physical system is limited. Such heuristic information may
time domain and frequency domain properties of orthogo- come, for instance, from an operator who has acted as a
nal wavelet systems are studied with examples of compact “human-in-the-loop” controller for the process. This course
support wavelets. The discrete wavelet transform (DWT) is investigates a number of concepts and techniques commonly
introduced and implemented. Biorthogonal wavelet systems referred to as Intelligent Algorithms, and discusses the under-
are also described. Orthogonal wavelet packets are discussed lying theory of these methodologies when appropriate, and
and implemented. Wavelet regularity and the Daubechies takes an engineering perspective and approach to the design,
construction is presented next. Finally the 2D DWT is dis- analysis, evaluation, and implementation of intelligent sys-
cussed and implemented. Applications of wavelet analysis to tems. Fuzzy Systems, Genetic Algorithms, Particle Swarm
denoising and image compression are discussed together with and Ant Colony Optimization Techniques, and Neural
an introduction to image coding. Networks are the primary concepts discussed in this course,
Prerequisites: 525.427 Digital Signal Processing and the basics and several engineering applications are presented along the
of linear systems. way. Expert (rule-based) Systems are also discussed within
Najmi the context of Fuzzy Systems. An Intelligent Algorithms
research paper must be selected from the existing literature,
525.763 Applied Nonlinear Systems implemented by the student, and presented as a final project.
This course provides an introduction to nonlinear systems, Student familiarity of system-theoretic concepts is desirable.
including differences between linear and nonlinear systems; Palumbo
102
525.771 Propagation of Radio Waves in the sis on designs involving active components. Linear and power
Atmosphere amplifiers and oscillators are considered, as well as stabil-
This course examines various propagation phenomena that ity, gain, and their associated design circles. The course uses
influence transmission of radio frequency signals between computer-aided design techniques and students fabricate and
two locations on earth and between satellite-earth termi- test circuits of their own design.
nals, with a focus on applications. Frequencies above 30 Prerequisite: 525.774 RF and Microwave Circuits I.
MHz are considered with emphasis on microwave and mil- Penn, Thompson
limeter propagation. Topics include free space transmission,
propagation, and reception; effects on waves traversing the 525.776 Information Theory
ionosphere; and attenuation due to atmospheric gases, rain, Course topics include measure of information, noiseless
Graduate Programs
and clouds. Brightness temperature concepts are discussed, coding, communication channels and channel capacity, the
and thermal noise introduced into the receiver system from noisy channel coding theorem, bounds on the performance
receiver hardware, and from atmospheric contributions, are of communications systems, the Gaussian and binary sym-
examined. Also described are reflection and diffraction effects metric channels, feedback communications systems, and rate
by land terrain and ocean, multipath propagation, tropo- distortion theory.
spheric refraction, propagation via surface and elevated ducts,
Prerequisite: 525.414 Probability and Stochastic Processes for
scatter from fluctuations of the refractive index, and scatter-
Engineers or equivalent.
ing due to rain. Atmospheric dynamics are described that
contribute to the various types of propagation conditions in Kinney
the troposphere.
525.777 Control System Design Methods
Prerequisite: An undergraduate degree in electrical engineer-
This course examines recent multivariable control system
ing or equivalent.
design methodologies and how the available techniques are
Dockery synthesized to produce practical system designs. Both the
underlying theories and the use of computational tools are
525.772 Fiber-Optic Communication Systems covered. Topics include review of classical control system
This course investigates the basic aspects of fiber-optic com- design and linear system theory, eigenstructure assignment,
munication systems. Topics include sources and receivers, the linear quadratic regulator, the multivariable Nyquist
optical fibers and their propagation characteristics, and opti- criterion, singular value analysis, stability and performance
cal fiber systems. The principles of operation and properties robustness measures, loop transfer recovery, H-infinity
of optoelectronic components, as well as the signal guiding design, and mu-synthesis. An introduction to nonlinear
characteristics of glass fibers, are discussed. System design techniques includes sliding mode control and feedback lin-
issues include terrestrial and submerged point-to-point opti- earization. Recent papers from the literature are discussed.
cal links and fiber-optic networks. Each student will be assigned a design project using PC-based
Prerequisite: 525.491 Fundamentals of Photonics. design and analysis software.
Sova Prerequisites: 525.466 Linear System Theory and 525.409
Continuous Control Systems or the equivalent.
525.774 RF and Microwave Circuits I Pue
In this course, students examine RF and microwave circuits
appropriate for wireless communications and radar sensing. 525.778 Design for Reliability, Testability, and
It emphasizes the theoretical and experimental aspects of Quality Assurance
microstrip design of highly integrated systems. Matrix analy- The design of reliable and testable systems, both analog and
sis and computer-aided design techniques are introduced digital, is considered at the component, circuit, system, and net-
and used for the analysis and design of circuits. Circuits work levels. Using numerous real-world examples, the tradeoffs
are designed, fabricated, and tested, providing a technically between redundancy, testability, complexity, and fault toler-
stimulating environment in which to understand the foun- ance are explored. Although the emphasis is predominantly on
dational principles of circuit development. Couplers, modu- electronics, related examples from the aerospace and software
lators, mixers, and calibrated measurements techniques are industries are included. The concepts of fault lists, collapsed
also covered. fault lists, and other techniques for reducing the complexity
Prerequisite: 525.423 Principles of Microwave Circuits or of fault simulation are addressed. A quantitative relationship
525.420 EM Transmission Systems. between information theory, error correction codes, and reli-
Penn, Thompson ability is developed. Finally, the elements of a practical qual-
ity assurance system are presented. In addition to homework
525.775 RF and Microwave Circuits II assignment, students will conduct an in-depth, quantitative
This course builds upon the knowledge gained in 525.774 case study of a practical system of personal interest.
RF and Microwave Circuits I. Here there is a greater empha- Jablonski
103
525.779 RF Integrated Circuits processing, intent determination, communications between

This course covers the RFIC design process focusing on the the human and the device, haptic feedback, and telepresence.
RF/Microwave portion of RFIC. An overview of digital cir- It is designed to be a hands-on course with class time spent in
cuits and digital signal processing will be given along with the dedicated robotics lab designing interfaces and perform-
semi-conductor fabrication, device models, and RF/Micro- ing experiments in a Virtual Integration Environment (VIE)
wave design techniques using a typical SiGe process. Part of and with robotic devices. Additional time in the lab, outside
the course will involve student design projects using Analog of class time, may be required to complete the course project.
Office software to design amplifiers, mixers, etc. Programming for the class will be in MATLAB and Simulink.
Prerequisite: 525.774 RF and Microwave Circuits I or Prerequisites: 525.427 Digital Signal Processing, knowledge of
equivalent. linear algebra, and familiarity with MATLAB and Simulink.
Graduate Programs
Penn, Wilson Armiger, Lesho
525.780 Multidimensional Digital Signal Processing 525.787 Microwave Monolithic Integrated Circuit
The fundamental concepts of multidimensional digital signal (MMIC) Design
processing theory as well as several associated application This course is for advanced students who have a background
areas are covered in this course. The course begins with an in microwave circuit analysis and design techniques and are
investigation of continuous-space signals and sampling theo- familiar with modern microwave computer-aided engineer-
ry in two or more dimensions. The multidimensional discrete ing tools. The course covers the monolithic implementation
Fourier transform is defined, and methods for its efficient of microwave circuits on GaAs substrates including instruc-
calculation are discussed. The design and implementation of tion on processing, masks, simulation, layout, design rule
two-dimensional non-recursive linear filters are treated. The checking, packaging, and testing. The first part of the course
final part of the course examines the processing of signals includes information and assignments on the analysis and
carried by propagating waves. This section contains descrip- design of MMIC chips. The second part consists of projects
tions of computed tomography and related techniques and in which a chip is designed, reviewed, and evaluated in an
array signal processing. Several application oriented software engineering environment, resulting in a chip mask set that is
projects are required. submitted for foundry fabrication.
Prerequisites: 525.414 Probability and Stochastic Processes for Prerequisite: 525.775 RF and Microwave Circuits II.
Engineers and 525.427 Digital Signal Processing or equiva- Penn
lents. Knowledge of linear algebra and MATLAB is helpful.
Jennison 525.788 Power Microwave Monolithic Integrated
Circuit (MMIC) Design
525.783 Spread-Spectrum Communications The Power MMIC course covers additional circuit design
This course presents an analysis of the performance and techniques applicable to MMICs (and microwave circuits
design of spread-spectrum communication systems. Both in general). It is an extension of RF and Microwave Cir-
direct-sequence and frequency-hopping systems are studied. cuits I and II and Microwave Monolithic Integrated Circuit
Topics include pseudonoise sequences, code synchronization, (MMIC) Design, though for students with a microwave
interference suppression, and the application of error-correct- background, these particular courses are not prerequisites.
ing codes. The use of code-division multiple access in digi- The topics covered include broadband matching, optimum
tal cellular systems is examined. The relationships between loads for efficiency and low intermodulation products,
spread spectrum, cryptographic, and error correction systems odd mode oscillations, details of nonlinear modeling, time
are explored. The mathematics of pseudo-random sequences domain simulation of nonlinear circuits, and thermal effects.
used as spreading codes is compared with the mathematics of Students do need to have a background in microwave mea-
complex numbers with which students are already familiar. surements and microwave CAD tools. No project is required,
Prerequisites: 525.416 Communication Systems Engineer- but there is structured homework involving power MMIC
ing. Students should have knowledge of material covered in design completed by the student using a foundry library. The
525.201 and 525.202. course is given in the spring; it is not given every year.
Jablonski Dawson
525.786 Human Robotics Interaction 525.789 Digital Satellite Communications

This course provides an investigation of human-robot inter- This course covers advanced topics in satellite communications
action and prosthetic control, with a focus on advanced systems, with emphasis on digital communications. After a
man-machine interfaces including neural signal processing, review of basic concepts, the following topics are addressed: the
electromyography, and motion tracking interfaces for con- distinctions between digital and nondigital communications
trolling and receiving feedback from robotic devices. The systems; reasons for preferring some forms of modulation and
course will also cover human physiology and anatomy, signal coding over others for spacecraft implementation; the rela-
104
tionships between spectrum management, signal propagation 525.794 Advanced Topics in VLSI Technology
characteristics, orbitology, constellation design, and commu- This course will concentrate on advanced concepts in VLSI
nications system design; the use of spread spectrum (CDMA design. Additional emphasis will be put on system archi-
and frequency-hopping), TDMA, and FDMA architectures; tecture, circuit analysis, device modeling, simulation, and
protocol design and usage; GPS; digital audio radio satellites; optimization. Topics include advanced logic techniques,
the use of geostationary satellites for mobile telephone systems; parasitic circuit elements, advanced simulation techniques,
satellite television; and VSAT terminals. temperature effects, and circuit and device performance lim-
Prerequisites: 525.416 Communication Systems Engineering its. Additional topics may include low-power/low-energy
is required, and 525.440 Satellite Communications Systems design techniques, performance limits, radiation effects, and
is recommended. Students should have knowledge of mate- cryogenic VLSI.
Graduate Programs
rial covered in 525.201 and 525.202.
Prerequisite: 525.428 Introduction to Digital CMOS VLSI
Jablonski or equivalent background in digital design.
525.791 Microwave Communications Laboratory Martin
Concepts involving the design and fabrication of micro-
wave subsystems are introduced in this laboratory course, 525.796 Introduction to High-Speed Electronics
including image rejection mixers, local oscillators, phase and Optoelectronics
locked loops, and microstrip filters. A communication proj- This course provides the student with the fundamental con-
ect is required, such as design and fabrication of an L-band cepts needed to address issues in both the design and test of
WEFAX (weather facsimile) receiver or a C-band AMSAT high speed electronic and optical systems. Topics include
(amateur communications satellite) converter. Modern electronic devices and circuits used at microwave and milli-
microwave analyzing instruments are used by the students to meter frequencies, optical active devices and waveguide tech-
evaluate the performance of the project subsystems. nology, electronic and optical pulse generation techniques,
Prerequisite: 525.774 RF and Microwave Circuits l. high speed packaging design, and testing techniques.
Everett, Fazi Prerequisite: Undergraduate courses in circuits and systems.
Sova, Vichot
525.792 Electro-Optical Systems
This course covers the analysis and conceptual design of prac- 525.797 Advanced Optics and Photonics Laboratory
tical electro-optical (EO) systems. Although EO technology
is emphasized, the fundamentals of radiometry and optical The objective of this course is to develop advanced experi-
radiation are also described to provide an understanding mental techniques in optics and photonics. Students will
of the essential physics, whereas background characteriza- work in teams of two or three on in-depth optical experi-
tion and atmospheric propagation are only briefly covered. ments consisting of multiple parts that include constructing
Basic EO system component performance is characterized experimental apparatus and developing data acquisition and
parametrically for detection, tracking, communications, and analysis software. Example experiments include coherent and
imaging. Passive (infrared imaging) and active (laser radar incoherent laser radar, laser vibrometry, fiber lasers dynamics,
and laser communication systems) are stressed. Components high-resolution microscopy using Fourier optics, 3D inter-
considered in these systems include basic telescopes and ferometric imaging, optical properties of materials, 10 Gbps
optics, focal plane arrays, laser diodes, photodiode receivers, WDM fiber communication system, optical tomographic
and laser scanners. imaging in highly diffuse media, speckle interferometry,
mode-locked and soliton lasers, and non-linear fiber optics.
Prerequisite: 615.751 Modern Optics or the equivalent.
The specific experiments will depend on hardware availability
Boone, Edwards and student interest.
525.793 Advanced Communication Systems Prerequisite: 525.436 Optics and Photonics Laboratory or
In this course, students receive an introduction to digital equivalent.
baseband and bandpass modulation and demodulation/ Sova, Terry
detection. Digital communication system performance is
then evaluated using link budget analysis. Additional topics 525.801 Special Project I
may include channel coding, equalization, synchronization, In individual cases, special arrangements can be made to
modulation and coding trade-offs, multiplexing, and mul- carry out a project of significant scope in lieu of a formal
tiple access. course. Further information is available from the program
Prerequisites: 525.414 Probability and Stochastic Processes for chair. Such arrangements are made relatively infrequently.
Engineers; 525.416 Communication Systems Engineering. This course number should be used for the first registration
Carmody of a student in any special project.
105
Note: To be assured consideration for any term, project pro- 525.803-804 Electrical and Computer Engineering
posals should reach the program chair by the end of the Thesis
registration period. These two courses are designed for students in the electrical
Staff and computer engineering graduate program who wish to
undertake a thesis project after completing all other require-
525.802 Special Project II ments for their degree. Students work with an advisor to con-
This course number should be used for the second registra- duct independent research and development in ECE leading
tion of a student in any special project. (See course 525.801 to a written thesis and oral presentation to a thesis commit-
Special Project I for a further description.) tee. The intent of the research may be to advance the body
of knowledge in one of the technology areas in the ECE pro-
Note: To be assured consideration for any term, project pro-
Graduate Programs
gram. Students accepted into this course will have off-hours

posals should reach the program chair by the end of the
access to ECE facilities at the Applied Physics Laboratory and
registration period.
the Dorsey Center. A limited amount of support for research
Staff materials is available.
Prerequisites: Completion of all other courses applicable to the
ECE graduate degree and approval of the ECE program chair
and vice-chair. The thesis option is appropriate for highly
motivated students with strong academic records.
Staff
106
Environmental Engineering, Science, and Management
Environmental The entire faculty of the Whiting School’s Department of

Geography and Environmental Engineering functions as the
Engineering, Science,
program committee for EP’s Master of Science in Environ-
mental Engineering, Science, and Management. This com-
mittee ensures that instruction in the part-time program
and Management is of the highest quality and is continually enhanced in a
manner consistent with parallel developments in the full-
In a world undergoing rapid ecological transformation, the time program.
role of environmental engineers, scientists, and planners has
become increasingly prominent. In the Johns Hopkins tradi- Faculty
tion of excellence, the graduate part-time program in environ-
Graduate Programs
The program features about 50 highly qualified faculty mem-
mental engineering, science, and management is one of the bers. Each is a distinguished and experienced professional
most comprehensive and rigorous professional environmen- with the highest academic degree in their field of expertise,
tal engineering, science, technology, planning, and manage- and each has demonstrated a strong commitment to excel-
ment programs in the nation. The program accommodates lence in teaching. Many of the outstanding full-time faculty
working professionals who wish to complete graduate degree from the nationally renowned Department of Geography and
requirements without interrupting their careers and provides Environmental Engineering at Johns Hopkins participate as
them with skills necessary to address a broad array of modern program instructors. In addition, the program includes sev-
environmental issues and capitalize on environmental protec- eral directors, senior scientists, engineers, researchers, and
tion and remediation opportunities presented by technol- attorneys affiliated with the U.S. Environmental Protec-
ogy. Common to all program activities is recognition of the tion Agency, Maryland Department of the Environment,
importance of obtaining a strong quantitative background U.S. Department of Energy, National Institutes of Health,
in the environmental engineering, science, and management National Research Council, U.S. Department of Defense,
principles that govern environmental processes. Nuclear Regulatory Agency, U.S. Army Corps of Engineers,
In the program, students obtain an up-to-date level of and many leading environmental consulting companies such
understanding in the following interrelated academic fields: as EA Engineering, Science and Technology, Bechtel Cor-
• Study of physical, chemical, and biological processes poration, CH2M Hill, Lockheed Martin Corporation, and
fundamental to understanding the environment fate and Northrop-Grumman. Please see the Appendix for the list of
engineered treatment of environmental contaminants active faculty members and their affiliations.
• Understanding the source and nature of waste materials
that contribute to air, soil, and water pollution and rel- Environmental Engineering, Science, and
evant management and control technologies Management—Online
• Advanced study of the science, impacts, mitigation, adap- To facilitate the accessibility of program offerings, the Master
tation, and policy relevant to climate change and global of Science in Environmental Planning and Management
environmental sustainability, energy planning, alternative and the Master of Science in Environmental Engineering
energy technologies, sustainable development, and next and Science are available fully online. The requirements for
generation buildings other degrees and certificates offered may be fulfilled online;
• Study of the transport and transformation of contami- students should consult with an academic services specialist
nants through environmental pathways for the full list of affected programs.
• Knowledge of the pollution prevention and technologies Students completing the joint Master of Arts in Applied
and designs associated with the treatment and disposal of Economics from JHU Advanced Academic Programs and
waste materials the Graduate Certificate in Environmental Planning and
• Rigorous study of the connection between the engineer- Management may complete the graduate certificate portion
ing and scientific aspects of environmental problems and of the program online through EP.
decision-making processes Students interested in pursuing the dual Master of Busi-
ness Administration through the Carey Business School,
Improved understanding in all of these areas is achieved
which combines with either the MS in Environmental
through a quantitative program built around the common
Planning and Management, or the MS in Environmental
theme of engineering and science in support of environmen-
Engineering and Science, or the Master of Environmental
tal decision making and management.
Engineering may complete the Master of Science portion of
the program online through EP.
Program Committee
There are numerous courses in the Environmental Engi-
Hedy V. Alavi, Program Chair neering, Science, and Management program offered in an
Environmental Engineering, Science, and Management online format, and more courses are continually being devel-
Engineering for Professionals oped. This increases the flexibility of course offerings for all
Whiting School of Engineering programs.
107
Degrees and Certificates 1. Grade point average of at least 3.0 on a 4.0 scale in
The program offers professional non-thesis degrees in the the second half of the undergraduate record or hold
following areas of study. graduate degrees in an engineering discipline.
• Master of Environmental Engineering 2. Successful completion of calculus sequence through
differential equations.
• Master of Science in Environmental Engineering and
Science (online) 3. Successful completion of a course in fluid mechanics or
hydraulics.
• Master of Science in Environmental Planning and
Management (online) 4. Successful completion of a course in statistics
(recommended).
• Advanced Certificate for Post-Master’s Study in Climate
Graduate Programs
Change, Energy, and Environmental Sustainability Applicants with an undergraduate degree in natural sciences
(online) may be admitted as provisional students to complete addi-
• Advanced Certificate for Post-Master’s Study in tional undergraduate course work in engineering fundamen-
Environmental Engineering tals and design prior to full admission to the program.
• Advanced Certificate for Post-Master’s Study in Course Requirements
Environmental Engineering and Science (online)
Attainment of the Master of Environmental Engineering
• Advanced Certificate for Post-Master’s Study in degree requires completion of ten one-term courses, includ-
Environmental Planning and Management (online) ing at least four courses at the 575.7xx level or above in the
• Graduate Certificate in Environmental Engineering entire Environmental Engineering, Science, and Manage-
• Graduate Certificate in Environmental Engineering and ment Program, within five years of enrollment.
Science (online) At least five of the required 10 courses must be taken
in the Master of Environmental Engineering area of study.
• Graduate Certificate in Environmental Planning and
Up to five elective courses, subject to prerequisite restric-
Management (online)
tions, may be taken from any of the three areas of study
(Master of Environmental Engineering, Master of Science in
Dual Degree Programs Environmental Engineering and Science, or Master of Science
• Master of Environmental Engineering— in Environmental Planning and Management). Any deviation
Master of Business Administration from these degree requirements, including transfer of courses,
(Johns Hopkins Carey Business School) and other requisites specified in the student’s admission letter
• Master of Science in Environmental Engineering and will not be approved by the program advisors.
Science (online)—Master of Business Administration
(Johns Hopkins Carey Business School) Master of Science in Environmental Engineering
• Master of Science in Environmental Planning and Science
and Management (online)—Master of Business This area of study stresses the fundamental concepts of phys-
Administration (Johns Hopkins Carey Business School) ics, chemistry, biology, and geology as applied in the context
of environmental issues, with less emphasis on design and
• Graduate Certificate in Environmental Planning and
management.
Management (online)—Master of Science in Applied
Economics (Johns Hopkins Advanced Academic Admission Requirements
Programs)
Prospective students must hold an undergraduate degree
in either engineering or natural science from a four-year
Master of Environmental Engineering regionally accredited college or university to be considered
This area of study focuses on the design of collection and for the Master of Science in Environmental Engineering and
treatment processes for air, water, wastewater, and solid and Science degree. Moreover, applicants must meet the follow-
hazardous waste, including study of the conceptual principles ing criteria:
underlying biological, physical, and chemical treatment.
1. Grade point average of at least 3.0 on a 4.0 scale in
Admission Requirements the second half of the undergraduate record or hold
graduate degrees in an engineering or a natural science
Prospective students must hold an Accreditation Board for
discipline.
Engineering and Technology (ABET)-accredited undergrad-
uate degree or demonstrated equivalent in an engineering 2. Successful completion of one year of college-level calcu-
discipline from a four-year regionally accredited college or lus and a course in differential equations.
university to be considered for the Master of Environmental 3. Successful completion of college-level courses is recom-
Engineering degree. Moreover, applicants must meet the mended in physics, chemistry, biology, geology, and
following criteria: statistics.
108
Course Requirements At least five of the required 10 courses must be taken

Attainment of the Master of Science in Environmental Engi- in the Master of Science in Environmental Planning and
neering and Science degree requires completion of ten one- Management area of study.
term courses, including at least four courses at the 575.7xx Up to five elective courses, subject to prerequisite restric-
level or above in the entire Environmental Engineering, tions, may be taken from any of the three areas of study
Science, and Management Program, within five years of (Master of Environmental Engineering, Master of Science in
enrollment. Environmental Engineering and Science, or Master of Science
At least five of the required 10 courses must be taken in Environmental Planning and Management). Any deviation
in the Master of Science in Environmental Engineering and from these degree requirements, including transfer of courses,
Science area of study. and other requisites specified in the student’s admission letter
Graduate Programs
will not be approved by the program advisors.
Up to five elective courses, subject to prerequisite restric-
tions, may be taken from any of the three areas of study
(Master of Environmental Engineering, Master of Science in
Environmental Engineering and Science, or Master of Science
in Environmental Engineering, Science, and
in Environmental Planning and Management). Any deviation
Management
from these degree requirements, including transfer of courses,
and other requisites specified in the student’s admission letter
Prospective students should possess a master’s degree in
environmental engineering, science, management, or similar
discipline. The program is intended to add depth and/or
Master of Science in Environmental Planning and breadth in the field of the student’s master’s degree or one
Management that is closely related.
This specialty emphasizes the relationships between environ-
mental engineering/science and public policy with a focus on Course Requirements
decision-making tools and policy analysis, as well as emphasis This certificate is awarded to students who complete six
on the role of economic factors in environmental manage- graduate-level courses beyond the master’s degree in an envi-
ment and water resources planning. This is a professional ronmental engineering, science, or management discipline.
non-thesis curriculum that encompasses the analytical and The program is intended to add depth and/or breadth in the
conceptual tools to identify, formulate, and evaluate complex discipline of the student’s master’s degree, or a closely related
environmental and water resources projects and systems, one. At least three of the required six courses must be at the
considering the interdisciplinary aspects of the technical, 575.7xx level or above in the Environmental Engineering,
environmental, economic, social, and financial constraints. Science, and Management Program. All courses must be
completed with grades above C, within three years of enroll-
Admission Requirements ment. This advanced certificate is also offered fully online.
Prospective students must hold an undergraduate degree in After the review of student’s academic credentials by the
engineering, natural science, economics, planning, manage- admission committee and admittance to the advanced certifi-
ment, or other related discipline from a four-year regionally cate for post-master’s study program, each student is assigned
accredited college or university to be considered for the Mas- an advisor with whom he or she jointly designs a program
ter of Science in Environmental Planning and Management tailored to individual educational goals. Any deviation from
degree. Moreover, applicants must meet the following criteria: these degree requirements, including transfer of courses, and
1. Grade point average of at least 3.0 on a 4.0 scale in the other requisites specified in the student’s admission letter will
second half of the undergraduate record or hold gradu- not be approved by the program advisors.
ate degrees in engineering, natural science, economics, Students must complete the advanced certificate within
planning, management, or other related discipline. three years of the first enrollment in the program.
2. Successful completion of one year of college-level calculus.
3. Successful completion of college-level courses is recom- in Climate Change, Energy, and Environmental
mended in physics, chemistry, biology, geology, and Sustainability
statistics. As the world’s population and technological advances con-
tinue to grow, demands for natural resources and energy
Course Requirements may lead to irrevocable damage to the earth’s physical and
Attainment of the Master of Science in Environmental Plan- ecological systems. EP’s Climate Change, Energy, and Envi-
ning and Management degree requires completion of 10 one- ronmental Sustainability program helps engineers, scien-
term courses, including at least four courses at the 575.7xx level tists, and managers design and implement solutions to these
or above in the entire Environmental Engineering, Science, environmental challenges. The program provides students
and Management Program, within five years of enrollment. with the expertise needed to enter or advance in public and
109
private sector roles related to energy, sustainability, and cli- 575.423 Industrial Processes and Pollution
mate. Students gain advanced knowledge in areas such as Prevention
climate change, energy planning, alternative energy technolo- 575.435 Environmental Law for Engineers and
gies, sustainable development, next generation buildings, air Scientists
resources management, and pollution control technologies. 575.437 Environmental Impact Assessment
Specially designed for working professionals, classes are held
on weekday evenings and Saturdays at the Washington, DC 575.710 Financing Environmental Projects
Center near Dupont Circle and at the Montgomery County 575.721 Air Quality Control Technologies
Campus in Rockville, the Applied Physics Laboratory in 575.759 Environmental Policy Analysis
Laurel, the Dorsey Center in Elkridge, and the Homewood 575.801 Independent Project in Environmental
Graduate Programs
Campus in Baltimore, Maryland. This advanced certificate is Engineering, Science, and Management
also offered fully online. 615.448 Alternate Energy Technology
Admission Requirements 615.775 Physics of Climate
Prospective students should possess a master’s degree in Note: 575.408, 575.411, 575.435, 575.437, and 575.759
environmental engineering, science, management, or similar are also available online.
discipline. The program is intended to add depth and/or
breadth in the field of the student’s master’s degree or one Graduate Certificate
that is closely related. The graduate certificate is directed toward students who may
not need a master’s degree, may not have the opportunity to
Course Requirements
pursue the entire master’s degree, or may wish to focus their
The advanced certificate is awarded to students who complete studies to a set of courses in a specific subject area. Students
six graduate-level courses beyond their master’s degree. After may wish to pursue one of the following three graduate cer-
being admitted to the program, students are assigned an tificate areas of study:
advisor with whom they jointly design a program tailored
to their educational goals. Any deviation from these degree • Graduate Certificate in Environmental Engineering
requirements, including transfer of courses, and other req- • Graduate Certificate in Environmental Engineering and
uisites specified in the student’s admission letter will not be Science (online)
approved by the program advisors. • Graduate Certificate in Environmental Planning and
The program consists of five core courses and several Management (online)
advanced electives. If warranted, some of the core courses
The certificate consists of six courses. All grades for the six
may be replaced by elective courses. At least three of the
courses must be above C. If, in the future, the student decides
required six courses must be at the 575.7xx level or above,
to pursue the full master’s degree, all courses will apply pro-
with students completing all courses with a grade above C,
vided they meet the program requirements and fall within
within three years of enrollment.
the five-year limit, and the student declares her/his intention
prior to award of the certificate.
Core Courses
Students must meet the master’s degree admission
575.711 Climate Change and Global Environmental requirements of the desired area of study. After the review
Sustainability of student’s academic credentials by the admission commit-
575.720 Air Resources Modeling and Management tee and admittance to the graduate certificate program, each
575.723 Sustainable Development and Next student is assigned an advisor with whom he or she jointly
Generation Buildings designs a program tailored to an individual goal. Any devia-
tion from these degree requirements, including transfer of
575.733 Energy Planning and the Environment
courses, and other requisites specified in the student’s admis-
575.734 Smart Growth Strategies for Sustainable sion letter will not be approved by the program advisors.
Urban Development and Revitalization Students must complete the graduate certificate within
Note: All courses within this core are also available online. three years of the first enrollment in the program.
Elective Courses Dual Degree Environmental—MBA Programs

180.611 The Global Environment and Public Health with Johns Hopkins Carey Business School
The need for closer ties between engineering and business
420.644 Sustainable Cities
management is increasing rapidly. This is demonstrated
575.408 Optimization Methods for Public Decision by the high percentage of students with engineering back-
Making grounds registered in prominent MBA programs nationally.
575.411 Economic Foundations for Public Decision The Whiting School of Engineering, through Johns
Making Hopkins Engineering for Professionals (EP), and the Carey
110
Business School offer a dual degree program in which stu- the Environmental Engineering, Science, and Management
dents are admitted to the MS in Environmental Planning Program. At least five of the required eight courses must be
and Management, the MS in Environmental Engineering taken in the Master of Environmental Engineering area of
and Science, or the Master of Environmental Engineering study. Up to three elective courses, subject to prerequisite
within EP and the Professional (Flexible) MBA program restrictions, may be taken from any of the three areas of the
within the Carey Business School, either simultaneously or EP Environmental Program (Master of Environmental Engi-
sequentially, and receive two separate degrees, one from each neering, Master of Science in Environmental Engineering
school, in a shorter period than normal because of double and Science, or Master of Science in Environmental Planning
counting courses in the two programs. and Management). Any deviation from these degree require-
Students must successfully complete the requirements ments, including transfer of courses from other programs,
Graduate Programs
for both degrees in order to be awarded the two degrees. and other requisites specified in the student’s admission letter
For the EP degree, students will be able to count two EP will not be approved by the program advisors.
course equivalents of academic credit from their Carey MBA For the requirements of the MBA component of this
toward their 10-course EP degree requirements. For the dual degree program, please visit the Carey Business School
MBA degree, students will be able to count the academic website at www.carey.jhu.edu.
equivalent of 12 credits from their EP program toward the
Carey 54-credit Professional MBA program and, as a result, Master of Science in Environmental Engineering
complete the MBA with 42 credits. Students will attain the and Science—Master of Business Administration
two degrees by completing 66 credits (28 courses) rather
than 84 credits (36 courses) that would otherwise be required Course Requirements
when pursuing these two programs independently Attainment of this dual degree requires completion of total
Both EP and Carey will provide advisor support for of 66 credits (28 courses), of which eight courses (24 credits)
students in the dual degree program. Students enrolled in from EP’s Environmental Engineering, Science, and Man-
a course must meet the academic standards of the school agement Program and 20 courses (42 credits) from the MBA
offering the course. Failure to meet academic standards of Program at the Carey Business School.
either school could result in probation or dismissal from the Accomplishment of the Master of Science in Environ-
particular school. mental Engineering and Science degree component of this
For additional information about the Professional (Flex- dual degree program requires the completion of a total of
ible) MBA program at the Carey Business School, please visit eight one-term courses, including at least four courses at
the Carey website at www.carey.jhu.edu. the 575.7xx level or above in the Environmental Engineer-
ing, Science, and Management Program. At least five of the
required eight courses must be taken in the Master of Science
Students applying to the dual degree programs must satisfy
in Environmental Engineering and Science area of study. Up
the admission requirements of both programs. Each program
to three elective courses, subject to prerequisite restrictions,
decides on admissions separately. Students will download the
may be taken from any of the three areas of the EP Envi-
application and submit supporting documents and applica-
ronmental Program (Master of Environmental Engineer-
tion fee to JHU Engineering for Professionals. The applica-
ing, Master of Science in Environmental Engineering and
tion will subsequently be forwarded to JHU Carey Business
Science, or Master of Science in Environmental Planning
School.
and Management). Any deviation from these degree require-
Students will use EP (the Whiting School of Engineer-
ments, including transfer of courses from other programs,
ing) as their home school of registration for the duration of
and other requisites specified in the student’s admission letter
the dual degree. Students will register for courses in both
schools following the EP registration process.
For the requirements of the MBA component of this
dual degree program, please visit the Carey Business School
Master of Environmental Engineering—
website at carey.jhu.edu.
Master of Business Administration
Course Requirements Master of Science in Environmental Planning
Attainment of this dual degree requires completion of total and Management—Master of Business
of 66 credits (28 courses), of which eight courses (24 credits) Administration
from EP’s Environmental Engineering, Science, and Man-
agement Program and 20 courses (42 credits) from the MBA Course Requirements
Program at the Carey Business School. Attainment of this dual degree requires completion of total
Accomplishment of the Master of Environmental of 66 credits (28 courses), of which eight courses (24 credits)
Engineering degree component of this dual degree program from EP’s Environmental Engineering, Science, and Man-
requires the completion of a total of eight one-term courses, agement Program and 20 courses (42 credits) from the MBA
including at least four courses at the 575.7xx level or above in Program at the Carey Business School.
111
Accomplishment of the Master of Science in Environ- Students must meet the master’s degree admission
mental Planning and Management degree component of requirements of the EP’s Environmental Planning and Man-
this dual degree program requires the completion of a total agement Program. After the review of student’s academic
of eight one-term courses, including at least four courses at credentials by the admissions committee and Program Chair,
the 575.7xx level or above in the Environmental Engineer- both EP and AAP’s Applied Economics program will provide
ing, Science, and Management Program. At least five of the advisor support for students in the dual degree program with
required eight courses must be taken in the Master of Sci- whom he or she jointly designs a program tailored to an
ence in Environmental Planning and Management area of individual educational goal.
study. Up to three elective courses, subject to prerequisite
restrictions, may be taken from any of the three areas of the Course Requirements
Graduate Programs
EP Environmental Program (Master of Environmental Engi- Attainment of this dual degree requires completion of nine
neering, Master of Science in Environmental Engineering courses from AAP’s Applied Economics program (www.
and Science, or Master of Science in Environmental Planning advanced.jhu.edu) and five courses from EP’s Environmen-
and Management). Any deviation from these degree require- tal Planning and Management area of study. All grades for
ments, including transfer of courses from other programs, the EP’s five courses must be above C. Students enrolled in
and other requisites specified in the student’s admission letter a course must meet the academic standards of the school
will not be approved by the program advisors. offering the course. Failure to meet academic standards of
For the requirements of the MBA component of this either school could result in probation or dismissal from the
dual degree program, please visit the Carey Business School particular school. Students must successfully complete the
website at www.carey.jhu.edu. requirements for both degrees in order to be awarded the
two degrees. Any deviation from these degree requirements,
Dual Degree Program with Johns Hopkins including transfer of courses from other programs, and other
Advanced Academic Programs, requisites specified in the student’s admission letter will not
Krieger School of Arts and Sciences be approved by the program advisors.
Master of Science in Applied Economics and Program Plan

Graduate Certificate in Environmental Planning Each student admitted to a degree or certificate program is
and Management assigned an academic advisor with whom he or she jointly
To enable professionals to advance in fields that require designs a program plan tailored to individual educational
expertise in both economics and the environment, EP has objectives and the degree provisions. After admission to the
collaborated with Johns Hopkins Advanced Academic Pro- degree program, students must submit an initial program
grams (AAP) to offer a dual program that combines curricu- plan indicating the courses they wish to take to fulfill the
lum from the AAP Applied Economics program with EP’s degree requirements. This plan, and subsequent changes to
Environmental Planning and Management program. Stu- it, must be approved by the student’s advisor. The initial
dents can earn a Master of Science in Applied Economics and approved program plan can be modified and resubmitted for
a Graduate Certificate in Environmental Planning and Man- review and approval as long as it complies with the student’s
agement by completing 14 courses rather than the 16 courses degree requirements.
that would otherwise be required when pursuing these two
programs independently. The courses toward the Graduate Special Students
Certificate in Environmental Planning and Management Students who satisfy the admission requirements but do not
may be completed online, and the courses toward the MS wish to receive a degree or certificate may also apply to be
Degree in Applied Economics are offered in Washington, designated as Special Students to take graduate-level courses
DC, near Dupont Circle. The course schedule is designed so for which they have satisfied the relevant prerequisites. If the
that working professionals may complete the dual program student is subsequently accepted to a degree or certificate pro-
on a part-time basis, while also allowing students to complete gram, the admissions committee will determine whether these
the program at a faster pace. For additional information courses may be counted in fulfillment of degree requirements.
about AAP’s MS in Applied Economics program, please visit
AAP’s website at www.advanced.jhu.edu. Course Offerings
Courses are offered at Homewood campus in Baltimore,
Montgomery County Campus in Rockville, Dorsey Center
Students applying to the dual degree program must satisfy in Elkridge, Applied Physics Laboratory in Laurel, Washing-
the admission requirements of both programs. Each program ton D.C. Center, and online.
decides on admissions separately. Students will download the
application and submit supporting documents and applica- Note: Some of the courses have prerequisites. Students
tion fee to Advanced Academic Programs. The application should refer to the course schedule published each term for
will be forwarded to JHU Engineering for Professionals. exact dates, times, locations, fees, and instructors.
112
Classified by the area of study, the courses offered include: 575.727 Environmental Monitoring and Sampling
575.728 Sediment Transport and River Mechanics
Master of Environmental Engineering
575.730 Geomorphic and Ecologic Foundations of
575.404 Principles of Environmental Engineering Stream Restoration
575.405 Principles of Water and Wastewater 575.744 Environmental Chemistry
Treatment 575.801 Independent Project in Environmental
575.406 Water Supply and Wastewater Collection Engineering, Science, and Management
575.407 Radioactive Waste Management
Note: 575.301, 575.415, 575.419, 575.426, 575.443,
575.420 Solid Waste Engineering and Management 575.445, 575.704, 575.708, 575.717, 575.720, and 575.730
575.423 Industrial Processes and Pollution Prevention
Graduate Programs
are also available online.
575.703 Environmental Biotechnology
575.706 Biological Processes for Water and Master of Science in Environmental Planning and
Wastewater Treatment Management
575.715 Subsurface Fate and Contaminant Transport 575.408 Optimization Methods for Public Decision
575.721 Air Quality Control Technologies Making
575.742 Hazardous Waste Engineering and 575.411 Economic Foundations for Public Decision
Management Making
575.745 Physical and Chemical Processes for Water 575.416 Engineering Risk and Decision Analysis
and Wastewater Treatment 575.428 Business Law for Engineers
575.746 Water and Wastewater Treatment Plant 575.435 Environmental Law for Engineers and
Design Scientists
575.801 Independent Project in Environmental 575.437 Environmental Impact Assessment
Engineering, Science, and Management 575.440 Geographic Information Systems (GIS) and
Remote Sensing for Environmental
Note: 575.404 and 575.405 are also available online.
Applications
Master of Science in Environmental Engineering 575.707 Environmental Compliance Management
and Science 575.710 Financing Environmental Projects
575.401 Fluid Mechanics 575.711 Climate Change and Global Environmental
575.415 Ecology Sustainability
575.419 Principles of Toxicology, Risk Assessment, 575.714 Water Resources Management
and Management 575.723 Sustainable Development and Next
575.426 Hydrogeology Generation Buildings
575.429 Modeling Contaminant Migration through 575.731 Water Resources Planning
Multimedia Systems 575.733 Energy Planning and the Environment
575.443 Aquatic Chemistry 575.734 Smart Growth Strategies for Sustainable
575.445 Environmental Microbiology Urban Development and Revitalization
575.704 Applied Statistical Analyses and Design of 575.735 Energy Policy and Planning Modeling
Experiments for Environmental Applications 575.747 Environmental Project Management
575.708 Open Channel Hydraulics 575.748 Environmental Management Systems
575.713 Field Methods in Habitat Analysis and 575.759 Environmental Policy Analysis
Wetland Delineation 575.801 Independent Project in Environmental
575.716 Principles of Estuarine Environment: The Engineering, Science, and Management
Chesapeake Bay Science and Management Note: 575.408, 575.411, 575.435, 575.437, 575.440,
575.717 Hydrology 575.707, 575.711, 575.714, 575.723, 575.731, 575.733,
575.720 Air Resources Modeling and Management 575.734, 575.747, and 575.759 are also available online.
113
Course Descriptions
575.401 Fluid Mechanics 575.406 Water Supply and Wastewater Collection
This course introduces the principles of continuity, momen- This course covers the design of reservoirs, conduits, water
tum, and energy applied to fluid motion. Topics include distribution systems, well fields, sewers, and drains. Included
hydrostatics; ideal-fluid flow; laminar flow; turbulent flow; is a study of population growth and its effects on water sup-
form and surface resistance with applications to fluid mea- ply requirements and sewage flows as well as techniques for
surement; and flow in conduits and channels, pumps, and analyzing rainfall, runoff, fluid flow, reservoir siting, and
turbines. groundwater flows.
Haq Prerequisite: 575.403 Fluid Mechanics or an equivalent
Graduate Programs
course in fluid flow or hydraulics.

575.404 Principles of Environmental Engineering Shin
This course provides knowledge of environmental elements
with insight into quantitative analysis and design where appli- 575.407 Radioactive Waste Management
cable. Topics include mass and energy transfer and balances; This course covers fundamental aspects of radioactive sub-
environmental chemistry; mathematics of growth and decay; stances in the environment; remediation processes for these
risk assessment and management; surface water pollutants, substances; and their eventual storage, processing, and dis-
biological and chemical oxygen demands; eutrophication; posal. It provides a basic understanding of radioactivity and its
water supply systems and drinking water standards; waste- effect on humans and their environment, and the techniques
water treatment systems and effluent standards; groundwater for their remediation and disposal. Topics include radioactiv-
flow, contaminant transport, and remediation technologies; ity, the nucleides, interaction of radiation with matter, shield-
hazardous waste and pollution prevention; remedial and cor- ing, dosimetry, biological effects, protection standards, sources
rective actions at contaminated sites; air pollution sources, of environmental radiation, risk evaluation, fate and transport
control technologies, and atmospheric stability; ambient air analysis, cleanup standards, legal requirements, cleanup tech-
quality standards and indoor air quality; global temperature, nologies, waste disposal, and case studies.
greenhouse effect and warming potential; global energy bal- Lightner
ance, carbon emission, and stratospheric ozone depletion;
solid waste management, landfill disposal, combustion, com- 575.408 Optimization Methods for Public Decision
posting, and recycling; medical waste; and environmental Making
law, ethics, and justice. Field trips are integrated into the This course is an introduction to operations research as
classes. This course is intended for all students in the Envi- applied in the public sector. Public sector operation research
ronmental Engineering, Science, and Management Program involves the development and application of quantitative
who do not possess an undergraduate degree in Environmen- models and methods intended to help decision makers solve
tal Engineering. complex environmental and socio-economic problems. The
Alavi, Overcash course material is motivated by real-world problems and is
presented in an environmental engineering-relevant context.
575.405 Principles of Water and Wastewater Such problems include air pollution control, water resources
Treatment management, transportation planning, scheduling, resource
Water quality objectives and the chemical, physical, and allocation, facility location, and biological conservation.
biological processes necessary for designing and managing Emphasis is placed on skill development in the definition
modern drinking water and wastewater treatment plants are of problems, the formulation of models, and the application
described in the course. The principles of coagulation, floccu- of solution methodologies. Methodologies covered in this
lation, sedimentation, filtration, biological treatment, solids course include linear programming, integer programming,
handling, disinfection, and advanced treatment processes are multi-objective optimization, and dynamic programming.
presented. The course serves as a basis for the more advanced Williams
courses: 575.745 Physical and Chemical Processes for Water
and Wastewater Treatment, 575.706 Biological Processes for 575.411 Economic Foundations for Public Decision
Water and Wastewater Treatment, and 575.746 Water and Making
Wastewater Treatment Plant Design. The course examines intermediate-level price theory and sur-
Prerequisites: 575.403 Fluid Mechanics or an equivalent veys applications to public sector decision making. Topics
course in fluid flow or hydraulics; two semesters of under- include demand, supply, behavior of the market, and intro-
graduate chemistry. ductory welfare economics. Applications include forecasting,
Davies-Venn benefit-cost analysis, input-output analysis, and economic
modeling.
Boland
114
575.415 Ecology 575.420 Solid Waste Engineering and Management

Course topics include an introduction to the organization This course covers advanced engineering and scientific concepts
of individual organisms into populations, communities, and principles applied to the management of municipal solid
and ecosystems; interactions between individual organisms, waste (MSW) to protect human health and the environment
groups of organisms, and the environment (including com- and the conservation of limited resources through resource
petition, natural selection, adaptation, diversity, and the role recovery and recycling of waste material. Topics include regula-
of climate change on migration and extinction); the effect of tory aspects and hierarchy of integrated solid waste manage-
acidification of the environment (including deforestation); ment; characterization and properties of MSW; municipal
and other human impacts on species diversity, community wastewater sludge utilization; hazardous waste found in MSW;
structure, and ecosystem stability. collection, transfer, and transport of solid waste; separation,
Graduate Programs
processing, combustion, composting, and recycling of waste
Hillgartner
material; and the landfill method of solid waste disposal, which
encompasses guidelines for design, construction, operation,
575.416 Engineering Risk and Decision Analysis siting, monitoring, remedial actions, and closure of landfills.
This course introduces students to the methods of risk analy- Permitting and public participation processes, current issues,
sis and decision analysis for engineers. Both quantitative and and innovative approaches are also addressed.
qualitative risk analysis methods will be covered. Topics will Alavi, Overcash
include qualitative risk analysis methods (risk lists; matrices;
failure modes and effects analysis; failure modes, effects, and 575.423 Industrial Processes and Pollution
criticality analysis, etc.), quantitative engineering risk analysis Prevention
methods (fault trees, event trees, etc.), environmental health
This course presents the pollution prevention and waste
risk analysis methods, decision bases, the axioms underlying
minimization concepts, terminologies, life cycle impacts,
decision analysis, and quantitative decision analysis meth-
and management strategies. The course introduces avail-
ods (decision trees, utility functions, risk attitude, value of
able remediation techniques for industrial pollution control
information calculations, etc.). The course also covers risk
and prevention and examines specific applications to indus-
perception, risk communication, and risk governance. Expert
tries including biological, chemical, physical, and thermal
assessment and the role of cognitive biases in the expert
techniques. Topics include current state of knowledge of
assessment process are included as well. The focus of this
pollution prevention approaches to encourage pollution pre-
course is on the fundamentals of risk and decision analysis
vention strategies, highlights of selected clean technologies
rather than their application in a particular field. Examples
and clean products, technical and economic issues, incentives
will be provided on a variety of different fields of engineering,
and barriers to pollution prevention, and the role of differ-
including space system design, environmental management,
ent sectors in promoting pollution prevention. Pollution
nuclear stockpile reliability, groundwater cleanup, and elec-
prevention and waste minimization techniques such as waste
tric power system reliability assessment.
reduction, chemical substitution, production process modi-
Guikema fication, and reuse and recycling will be addressed to selected
industries such as textiles, electroplating, pulp and paper, and
575.419 Principles of Toxicology, Risk Assessment, petroleum refining.
and Management Engel-Cox
Risk assessment and risk management have become cen-
tral tools in continued efforts to improve public safety and 575.426 Hydrogeology
the environment within the limited resources available. This This course is an introduction to groundwater and geology
course introduces the basic concepts of environmental risk and to the interactions between the two. It provides a basic
assessment, relative risk analysis, and risk perception, includ- understanding of geologic concepts and processes, focusing
ing identifying and quantifying human health impacts and on understanding the formation and characteristics of water-
evaluating ecological risk. The course describes legislative and bearing formations. The course also addresses the theory of
regulatory initiatives that are attempting to base decisions on groundwater flow, the hydrology of aquifers, well hydraulics,
risk assessment, along with the controversy that surrounds groundwater-resource evaluation, and groundwater chem-
such approaches. It also addresses specific federal require- istry. The relationship between the geologic concepts/pro-
ments for risk analysis by industry. The course discusses the cesses and the groundwater resource are discussed. Examples
realities of using risk assessments in risk management deci- include a discussion of the influence of the geologic environ-
sions, including the need to balance costs and benefits of risk ment on the availability and movement of groundwater and
reduction, issues of environmental equity, accounting for the on the fate and transport of groundwater contaminants. Geo-
uncertainties in risk estimates, effective risk communication, technical engineering problems associated with groundwater
and acceptable risk. issues are also covered.
Dellarco Taylor
115
575.428 Business Law for Engineers ing process. Topics include an overview of environmental
This course introduces engineers to the basic legal principles impact assessment; selection of scientific, engineering, and
they will encounter throughout their careers. Course dis- socioeconomic factors in environmental impact assessment;
cussions cover contracts (formation, performance, breach, identification of quantitative and qualitative environmental
and termination), corporations and partnerships, insurance, evaluation criteria; application of traditional and other tech-
professional liability, risk management, environmental law, niques for assessing impacts of predicted changes in envi-
torts, property law, and evidence and dispute resolution. ronmental quality; approaches for identifying, measuring,
The course emphasizes those principles necessary to provide predicting, and mitigating environmental impacts; modeling
engineers with the ability to recognize issues that are likely techniques employed in environmental impact assessment;
to arise in the engineering profession and introduces them to environmental standards and the environmental impact
Graduate Programs
the complexities and vagaries of the legal profession. assessment process; and methodologies for incorporating
Leiman environmental impact assessment into management decision
making. Students learn to prepare an environmental impact
575.429 Modeling Contaminant Migration through assessment, review and critically analyze an environmental
Multimedia Systems impact statement, use mathematical models for environ-
This course addresses contamination that can affect many mental impact prediction, and apply environmental impact
media as it migrates through the environment. Typically, assessment as a tool in management decision making. Case
contaminant sources occur in soil, from which the chemicals studies of environmental impact assessment for several types
then migrate to air, surface water, and groundwater. Predict- of engineering projects are employed.
ing the movement of contaminants through these media Toussaint
requires addressing the fate and transport processes that pre-
dominate in each medium and integrating the interactions 575.440 Geographic Information Systems (GIS) and
between the media. The course presents the basic principles Remote Sensing for Environmental
and numerical methods for simulation contaminant migra- Applications
tion from soil into and through surface-water bodies, air, and Through lectures and laboratory exercises, this course illus-
groundwater. The basic processes of fate and transport in the trates the fundamental concepts of GIS and remote sensing
various media will be addressed: entrainment, adsorption, technologies in the context of environmental engineering.
volatilization, chemical reactions such as degradation and Topics include the physical basis for remote sensing, remote
photolysis, convection, and Gaussian dispersion and deposi- sensing systems, digital image processing, data structures,
tion. Selected public-domain numerical models will be used database design, and spatial data analysis. The course is not
to simulate the fate and transport processes. Central to the intended to provide students with extensive training in par-
course will be a project that integrates multimedia environ- ticular image processing or GIS packages. However, hands-
mental modeling through a case study. on computer laboratory sessions re-enforce critical concepts.
Robert, Root, Stoddard Working knowledge of personal computers and completion
of a term project are required.
575.435 Environmental Law for Engineers and Roper
Scientists
This course explores fundamental legal concepts relevant to 575.443 Aquatic Chemistry
environmental issues, including the relationship between Thermodynamics and equilibrium are applied to processes in
statutes, regulations, and court decisions. Also included are natural waters, water supply systems, wastewater treatment
various forms of enforcement used in environmental rules: systems, and other water-based systems. Topics include the
command and control, liability, and information disclosure. chemistry of electrolyte solutions, acids and bases, dissolved
Specific issues include criminal enforcement, a survey of carbonate and other pH-buffering solutes, the precipitation
environmental statutes, regulations and case law, the purpose and dissolution of inorganic solids, complex formation and
and misconceptions surrounding environmental audits and chelation, and oxidation-reduction reactions. Quantitative
assessments, the concept of attorney-client privilege, unau- problem solving and the visualization of chemical speciation
thorized practice of law, and ethical conflicts between the are emphasized.
attorney and engineer/scientist roles. Gilbert
Gorski, Henderson
575.445 Environmental Microbiology
575.437 Environmental Impact Assessment This course covers fundamental aspects of microbial physiol-
This course examines principles, procedures, methods, and ogy and ecology. Specific areas of focus include energetics
applications of environmental impact assessment. The goal of and yield, enzyme and growth kinetics, cell structure and
the course is to promote an understanding of how environ- physiology, metabolic and genetic regulation, microbial/
mental impact assessment is conducted and used as a valuable environmental interactions, and biogeochemical cycles. The
tool in the engineering project management decision-mak- goal of this course is to provide a basic understanding and
116
appreciation of microbial processes that may be applicable of activated sludge, aeration and clarifier design, fixed film
to environmental biotechnology. reactors, anaerobic treatment, solids handling and treatment,
Wilson-Durant land treatment, and nutrient removal are presented. This
course uses concepts from microbiology and the basic prin-
575.703 Environmental Biotechnology ciples of stoichiometry, energetics, and microbial kinetics are
This course examines current applications of biotechnology used to support the design of biological unit processes.
to environmental quality evaluation, monitoring, and reme- Prerequisites: 575.405 Principles of Water and Wastewater
diation of contaminated environments. The scale of tech- Treatment.
nology ranges from the molecular to macrobiotic. Relevant Weiss
topics of microbiology and plant biology are presented. These
Graduate Programs
provide a foundation for subsequent discussions of microbial 575.707 Environmental Compliance Management
removal and degradation of organics, phytoremediation of The course covers compliance with environmental laws and
soil and water contaminated with toxic metals and radionu- regulations by industry, small business, government facilities,
clides, wetlands as treatment processes, biofilms/biofilters for and others. It includes legal responsibilities, environmental
vapor-phase wastes, and composting. Emphasis is placed on management systems, and practices such as audits and infor-
modeling and design. Advantages and disadvantages of each mation systems and development of corporate policies and
application are compared. Case studies are presented in the procedures that rise to the daunting challenge to harmonize
areas of biosensors in environmental analysis, molecular biol- the institution’s primary goals with its environmental obliga-
ogy applications in environmental engineering, and genetic tions. Several dimensions of environmental management are
engineering of organisms for bioremediation. discussed: federal, state, and local regulation; scientific/tech-
Prerequisite: Prior course work in environmental microbiol- nical factors; public relations and the press; and institutional
ogy or biochemical engineering is recommended but not objectives including economic competitiveness.
required. Riegel
Wilson-Durant
575.708 Open Channel Hydraulics
575.704 Applied Statistical Analyses and Design of The course covers application of the principles of fluid
Experiments for Environmental mechanics to flow in open channels. Topics include uniform
Applications flow, flow resistance, gradually varied flow, flow transitions,
This course introduces statistical analyses and techniques of and unsteady flow. The course also addresses flow in irregular
experimental design appropriate for use in environmental and compound channels, backwater and 2-D flow modeling,
applications. The methods taught in this course allow the and applications to channel design and stability.
experimenter to discriminate between real effects and experi- Prerequisites: Fluid Mechanics or an equivalent course in fluid
mental error in systems that are inherently noisy. Statistically flow or hydraulics.
designed experimental programs typically test many vari- Hudson
ables simultaneously and are very efficient tools for develop-
ing empirical mathematical models that accurately describe 575.710 Financing Environmental Projects
physical and chemical processes. They are readily applied to This course treats the financing of projects from two comple-
production plant, pilot plant, and laboratory systems. Topics mentary perspectives: that of a government agency funding
covered include fundamental statistics; the statistical basis source, and that of an environmental utility (water, wastewa-
for recognizing real effects in noisy data; statistical tests and ter, solid waste) that needs funds for its project. It discusses
reference distributions; analysis of variance; construction, grants, concessionary loans, market loans, and loan guaran-
application, and analysis of factorial and fractional-factorial ties, along with their relative desirability and efficiency. Since
designs; screening designs; response surface and optimization grant funding is never available for all projects, the course
methods; and applications to pilot plant and waste treat- deals extensively with borrowing/lending. It discusses strate-
ment operations. Particular emphasis is placed on analysis gies for maximizing utility income, including appropriate
of variance, prediction intervals, and control charting for tariff structures and the reform of government subsidy policy
determining statistical significance as currently required by from supply-based general subsidies to demand-based tar-
federal regulations for environmental monitoring. geted subsidies. Operational strategies to maximize income
Bodt are also discussed, such as techniques to improve billing and
collections, reduce losses, and reduce energy costs. Tradi-
575.706 Biological Processes for Water and tional cash flow analyses are used to determine debt service
Wastewater Treatment capabilities. Various project cost reduction strategies, such
This course develops the fundamentals and applications of as staging and scaling, are introduced. Grants in the form
aerobic and anaerobic biological unit processes for the treat- of upfront project cost buy-downs vs. annual debt service
ment of municipal and industrial wastewater. The principles subsidies are compared. Finally, several examples of project
117
financing combining many of the elements introduced dur- nation’s waters. Water supply topics include rainfall runoff
ing the course are presented and analyzed. relationships, probabilistic flow analysis, multiple-objective
Curley reservoir siting and operation, and safe yield analysis. Water
quality topics include regulatory requirements; non-point
575.711 Climate Change and Global Environmental source runoff; point source discharge; water quality analysis
Sustainability of streams, lakes, and estuaries (including waste heat, con-
This is a multidisciplinary course that focuses on the critical ventional pollutants, and toxic chemicals); and in-stream bio-
assessment of science, impacts, mitigation, adaptation, and logical resource requirements and assessment. Both the water
policy relevant to climate change and global environmental supply and water quality discussions provide an overview of
sustainability. The first half of the course actively investigates current computer simulation models. The course concludes
Graduate Programs
concepts and aspects of environmental sustainability, includ- with new integrated approaches for watershed management,
ing the review of international assessments and reports and including Waste Load Allocation and Total Maximum Daily
the analyses of relevant implications for human health, natural Loss (TMDL) analysis for pollutants entering water bodies.
resources, energy supply and demand, and waste/pollution. George, Joseph
The second half of the class addresses climate change sci-
ence; existing evidence and observations of climate change; 575.715 Subsurface Fate and Contaminant Transport
models and predictions of potential physical, ecological, and
The course covers the nature and sources of chemicals in the
anthropological impacts; technological, economic, political,
and consumer driven mitigation and adaptation strategies; subsurface, the role of groundwater and soil water in mobi-
and past and present local, state, federal, and international lizing and spreading contamination, the processes that con-
policy and legislation. This course stresses active learning and trol distribution and fate of subsurface contamination, the
critical thinking. It requires both the objective and subjec- accepted methods of investigating and analyzing contamina-
tive analyses of an array of environmental sustainability and tion, and contaminant transport. The course also considers
climate change topics and materials. Students will be required surface water contamination caused by contamination in the
to report on a current work of relevant nonfiction in the groundwater. Computer laboratories of groundwater model
field, complete an original case study, and critically review cli- simulations and solute transport solutions are used.
mate change documentaries. Students will also be required to Barranco
complete quantitative technical assignments; research popu-
lar press, governmental agency, and peer-reviewed scientific 575.716 Principles of Estuarine Environment: The
literature; and participate in class discussions, presentations, Chesapeake Bay Science and Management
and exercises. The course examines the basic physical, chemical, and bio-
Robert logical components of the Chesapeake Bay ecosystem and
how they interrelate in both healthy and degraded states of an
575.713 Field Methods in Habitat Analysis and estuary. The course focuses on the tidal waters of the Chesa-
Wetland Delineation peake Bay and its tributaries. It also covers the relationships
The course provides students with practical field experience of the Bay with the surrounding watershed, atmosphere, and
in the collection and analysis of field data needed for wetland ocean as well as relevance to other coastal systems. Particular
delineation, habitat restoration, and description of vegetation emphasis is given to anthropogenic stresses such as nutrient
communities. Among the course topics are sampling tech- and contaminant pollution, habitat modification, and har-
niques for describing plant species distributions and com- vest of fish and shellfish. The most current Chesapeake Bay
munity structure and diversity, including the quadrant and management issues and policies being pursued at the federal,
transect-based, point-intercept, and plotless methods; iden- state, and local levels of government are discussed in depth,
tification of common and dominant indicator plant species including their scientific foundation.
of wetlands and uplands; identification of hydric soils; use of
Brush
soil, topographic, and geologic maps and aerial photographs
in deriving a site description and site history; and graphic and 575.717 Hydrology
statistical methods including GIS applications for analyzing
and presenting the field data. The classes consist of field stud- This course reviews components of the hydrologic cycle,
ies to regional and local sites. including precipitation, evapotransportation, infiltration,
subsurface flow, and runoff. Analysis of hydrologic data,
Prerequisite: 575.415 Ecology.
including frequency analysis and the use of stochastic models
Hilgartner for describing hydrologic processes, is also covered.
575.714 Water Resources Management Prerequisite: Fluid Mechanics or an equivalent course in fluid
flow or hydraulics.
This course examines watershed approaches to maintenance
of the hydrological, chemical, and biological integrity of the Raffensperger
118
575.720 Air Resources Modeling and Management buildings are optimally integrated on all parameters--initial
This course is a comprehensive overview of air resources affordability, timeliness of completion, net life-cycle cost,
modeling and management. Topics covered in this course durability, functionality for programs and persons, health,
include an introduction to particulate matter and gas-phase safety, accessibility, aesthetic and urban design, maintainabil-
pollutant chemistry and physics; an overview of atmospheric ity, energy efficiency, and environmental sustainability. The
motion to give students a sense of how air pollutant trans- principles of LEED building design and certification will
port and transformation is modeled; air pollution modeling also be introduced and example projects reviewed. Integrated
fundamentals and applications; an assessment of air pollution design and construction practices that significantly reduce or
exposure, health effects, toxicological and epidemiological eliminate the negative impact of buildings on the environ-
considerations; regulatory considerations in air pollution ment and occupants will be assessed in the broad areas of: 1)
Graduate Programs
control related to model selection and use; a brief overview of sustainable site planning, 2) safeguarding water and water effi-
air pollution control technologies and specific considerations ciency, 3) energy efficiency and renewable energy, 4) conserva-
relative to indoor air quality and climate change. Specific air tion of materials and resources, and 5) indoor environmental
pollution problems addressed in the course include those quality. A critical element for a successful sustainable building
involving the state of air pollution at local, regional, and policy and program is an integrated building planning and
national scales; air pollution problems from a public health design process. Integrated planning and design refers to an
perspective and system analytic approaches for developing interactive and collaborative process in which all stakehold-
air pollution control strategies for particulate matter, tropo- ers are actively involved and communicate with one another
spheric ozone, acid rain, carbon monoxide, nitrogen oxides, throughout the design and construction practice. These pro-
and greenhouse gases. A term-long case study assignment is cesses will also provide a broader understanding of sustainable
required that will leverage these course elements against a options for infrastructure changes that may occur in various
relevant real-world air pollution scenario. BRAC planning and implementation situations. A number
Ellis, Robert of case studies will be examined to gain an understanding of
application issues.
575.721 Air Quality Control Technologies Roper
This is a multidisciplinary course that involves the applica-
tions of chemistry, thermodynamics, and fluid mechanics in 575.727 Environmental Monitoring and Sampling
the selection and design of air pollution control equipment. The course examines in detail the principles and meth-
Topics include the estimation of potential pollutants, chemi- ods for monitoring and discrete sampling of environmen-
cal characterization of gas streams to be controlled, theory tal media, including surface water, groundwater, soil, air,
and practice of air pollution control, and design and costing solid wastes, and tissues within the context of regulatory
of control technologies. The course emphasizes the design compliance. Basic health and safety issues and Data Quality
of systems to reduce particulate matter emissions, volatile Objectives will be covered initially. Sampling design covers
organic compound (VOC) emissions, nitrogen oxide emis- basic statistical concepts including data variability and detec-
sions, and sulfur dioxide emissions. tion of significant differences among sample sets. Regula-
Prerequisites: Fluid Mechanics or an equivalent course in fluid tory perspectives reviews requirements of the major statutes
flow; an undergraduate course in thermodynamics. governing sampling of various media, including the Clean
Robert Water Act, Clean Air Act, CERCLA, and RCRA. Sampling
methods surveys current methods for discrete sampling and
575.723 Sustainable Development and Next automated data acquisition for each medium. Chemical and
Generation Buildings biological analysis reviews laboratory methods for analyz-
The course will introduce the concepts, applications, and ing samples. Data presentation and interpretation covers
tools for analysis and decision making in support of sustain- data management methods to support decision making. The
able environmental development and next generation com- course includes field trips and off-campus lectures and/or
munities and building design. Students will be introduced to demonstrations at laboratories.
a variety of challenges related to environmental protection, Stoddard
stewardship, and management of air, soil, and water. The
underlying principles of ecological protection, stewardship, 575.728 Sediment Transport and River Mechanics
reduced environmental footprint, ecosystem capital, sustain- This course examines the processes of sediment entrain-
able economic development, and globalization impacts will ment, transport, and deposition and the interaction of flow
be reviewed. The integration of actions that are ecologically and transport in shaping river channels. Topics reviewed
viable, economically feasible, and socially desirable to achieve include boundary layer flow; physical properties of sediment;
sustainable solutions will be evaluated. Within this context incipient, bed-load, and suspended-load motion; bed forms;
sustainable building concepts will be explored that are intend- hydraulic roughness; velocity and stress fields in open chan-
ed to provide throughout their lifetime a beneficial impact nels; scour and deposition of bed material; bank erosion;
on their occupants and their surrounding environment. Such and size, shape, platform, and migration of river channels.
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In addition, the course develops techniques of laboratory, a continuing theme as each energy technology is studied and
theoretical, and numerical modeling and applies them to its contribution to climate change is assessed. Carbon sup-
problems of channel design, restoration, and maintenance. pression schemes are examined. Particular attention is paid to
Prerequisites: Fluid Mechanics or an equivalent course in fluid consequences and effectiveness of government intervention
flow or hydraulics. and regulation. The purpose is to help students understand
Wilcock how energy is converted into useful forms, how this conver-
sion impacts our environment, and how public policy can
575.730 Geomorphic and Ecologic Foundations of shape these impacts.
Stream Restoration Prerequisite: 575.411 Economic Foundations for Public
This course presents principles from hydrology, sedimenta- Decision Making, or an equivalent course in microeconomic
Graduate Programs
tion engineering, geomorphology, and ecology relevant to the theory, is recommended.

design and evaluation of stream restoration projects. A water- Lightner
shed context is emphasized in developing the background
needed to assess different design approaches. After develop- 575.734 Smart Growth Strategies for Sustainable
ing a common foundation in stream dynamics, the course Urban Development and Revitalization
considers trade-offs among restoration objectives, the merits This course addresses the concepts, practices, and tools for
of analog and predictive approaches, the role of uncertainty smart growth sustainable urban planning and provides an
in restoration design, and metrics for assessing ecological understanding for how to apply these to urban communities.
recovery. The course includes field trips, design exercises, and The sustainable urban development is a pattern of resource
project assessment. use that aims to meet human needs while preserving the
Wilcock, Baker environment so that these needs can be met not only in the
present, but also for future generations to come. In other
575.731 Water Resources Planning words, it is the development and restoration of urban areas
The course will discuss the application and interrelationships that will meet the needs of the present without compromis-
among microeconomics, ecology, hydrology, and related ing the ability of future generations to meet their own needs.
fields to the planning and management of water systems. The course addresses a number of urban design concepts
Topics will include flood control, navigation, hydroelectric for smart growth and sustainable development, including
power, water supply, environmental restoration, multiobjec- balanced land use planning principles; importance of an
tive planning, and urban water resource management. The overall transportation strategy; providing urban tree cover-
course will demonstrate the process for planning a water age; leveraging public transportation accessibility; providing
resource project, including identifying the problems and a spectrum of housing availability; integration of office, retail,
opportunities, inventorying and forecasting conditions, and housing units; reduction of urban area environmental
formulating alternative plans, evaluating alternative plans, footprint; use of recycled, reused, reusable, green, and sus-
comparing alternative plans, and selecting a plan. Particular tainable products; integration of renewable solar energy and
attention will be paid to the appropriate interdisciplinary wind power into buildings and government systems; transit-
approach to plan formulation. oriented development; innovative low impact storm water
Kranzer management practices; reduction in urban heat island effects;
urban water resource management; and energy efficiency and
575.733 Energy Planning and the Environment conservation.
This course examines the interrelationships between the
Roper
environment and the ways in which energy is produced,
distributed, and used. Worldwide energy use patterns and 575.735 Energy Policy and Planning Modeling
projections are reviewed. Particular attention is paid to the
This course provides students with comprehensive knowledge
electrical and transportation sectors of energy use. Underly-
on methods for optimizing operation and design of energy
ing scientific principles are studied to provide a basis for
systems and methods for analyzing market impacts of energy
understanding the inevitable environmental consequences of
and environmental policies with emphasis on both theory
energy use. Topics studied include fossil, nuclear, and exist-
and solution of actual models. The course also covers linear
ing and potential renewable sources, including hydroelectric,
and nonlinear programming and complementarity methods
geothermal, tidal, wind, and solar. Transportation options
for market simulation.
including internal combustion, hybrid, and electric options
are quantitatively compared. Use of alternate fuels such as Prerequisites: 575.411 Economic Foundations for Public
biodiesel and ethanol are evaluated. Emphasis is placed on Decision Making and 575.408 Optimization Methods for
the environmental impacts of energy sources, including local Public Decision Making or equivalent courses in intermedi-
effects resulting from emissions of nitrogen oxides, sulfur, ate microeconomics and optimization methods (linear pro-
hydrocarbons, and particulates as well as global effects such as gramming), or permission of instructor.
mercury release from coal combustion. Carbon emissions are Hobbs
120
575.742 Hazardous Waste Engineering and 575.745 Physical and Chemical Processes for Water
Management and Wastewater Treatment
The course addresses traditional and innovative technolo- In this course, mass and momentum transport, aquatic
gies, concepts, and principles applied to the management of chemistry, and chemical reaction engineering are applied to
hazardous waste and contaminated sites to protect human physical and chemical processes used for water and waste-
health and the environment. Topics include regulatory water treatment. Students also learn the theory and practice
requirements; fate and transport of contaminants; physical, of various unit processes including disinfection, oxidation,
chemical, and biological treatment; land disposal restrictions; coagulation, sedimentation, filtration, adsorption, gas trans-
guidelines for design, construction, and closure of hazardous fer, and membrane filtration. The goal is to provide a theo-
waste landfills; environmental monitoring systems; manage- retical understanding of various chemical and physical unit
Graduate Programs
ment of medical waste and treatment options; management operations, with direct application of these operations to
of underground and aboveground storage tanks; toxicology the design and operation of water and wastewater treatment
and risk assessment; pollution prevention and waste minimi- systems. Students will use the concepts learned in this class
zation; hazardous waste generators and transporters; permit- to better understand the design and operation of engineered
ting and enforcement of hazardous waste facilities; closure and natural aquatic systems.
and financial assurance requirements; and RCRA Subtitle C Prerequisite: 575.405 Principles of Water and Wastewater
Corrective Action and CERCLA/Superfund/Bloomfields site Treatment.
remediation processes. Arora
Alavi, Overcash
575.746 Water and Wastewater Treatment Plant
575.743 Atmospheric Chemistry
Design
Earth’s atmosphere is a vital, fragile component of our envi-
This course familiarizes students with appropriate design
ronment. This course covers the chemical composition of the
criteria and the design process for water and wastewater treat-
atmosphere and the principles of chemistry that control the
ment plants. This includes design of treatment processes, cost
concentrations of chemical species. Following an introduction
estimates, and a working design team under project manag-
to the atmosphere, including its structure and key physical
ers. Additional course requirements include oral presenta-
concepts of atmospheric thermodynamics, radiative transfer,
tions and writing engineering reports.
and dynamics, the course investigates gas- and aqueous-phase
chemical kinetics, molecular spectroscopy, and photochemi- Prerequisites: 575.405 Principles of Water and Wastewater
cal processes. This foundation of chemistry and physics is Treatment and either 575.706 Biological Processes for Water
then applied to the study of ozone in the stratosphere (“good” and Wastewater Treatment or 575.745 Physical and Chemi-
ozone) and troposphere (“bad” ozone) and the global chemical cal Processes for Water and Wastewater Treatment.
cycles of sulfur-, nitrogen-, carbon-, and halogen-containing Davies-Venn
trace constituents, with implications for the environment. In
575.747 Environmental Project Management
each case, a description of typical in situ and remote sensing
measurement techniques is included. Clouds, atmospheric This course educates students on the key elements of an
aerosols, and climate change and their interactions with atmo- integrated approach to environmental project management,
spheric chemistry are discussed, and connections between an endeavor that requires expertise in scientific, engineering,
atmospheric chemistry and health, such as through fine par- legal, public policy, and project management disciplines.
ticulate matter and ground level ozone, are also made. The Emphasis is placed on critical factors that are often unique
course concludes with a survey of chemistry transport and to a major environmental project, such as the uncertainty
statistical computer modeling of atmospheric chemistry. surrounding scope definition for environmental cleanup
projects and the evolving environmental regulatory environ-
Swartz
ment. The students learn to develop environmental project
575.744 Environmental Chemistry plans, establish project organization and staffing, define man-
This course focuses on the environmental behavior and fate agement functions, develop time management approaches,
of anthropogenic contaminants in aquatic environments. resolve project conflicts, determine project effectiveness,
Students learn to predict contaminant properties influenc- implement integrated project management techniques such
ing contaminant transfers between hydrophobic phases, as the Program Evaluation and Review Technique (PERT)
air, water, sediments, and biota, based on a fundamental and the Critical Path Method (CPM) as they relate to envi-
understanding of physico-chemical properties, intermo- ronmental project management, perform pricing and cost
lecular interactions and basic thermodynamic principles. estimating, establish cost control, set priorities, and perform
Mechanisms of important transformation reactions are also trade-off analyses. The course uses environmental project case
discussed and techniques and quantitative models for pre- studies to examine the integrated nature of environmental
dicting the environmental fate or human exposure potential project management. Examples of topics to be covered in this
of contaminants are discussed. case study format include environmental security projects,
Jayasundera environmental technology deployment projects, privatiza-
121
tion of governmental environmental projects, and pollution legal, financial, and economic considerations in a context of
prevention/waste minimization projects. incomplete information and uncertain futures. One or more
Toussaint specific environmental policies are studied in the course of
the semester. Students are expected to plan and execute indi-
575.748 Environmental Management Systems vidual research projects that demonstrate the use of quan-
This course gives engineering students a thorough ground- titative and/or economic tools in designing and evaluating
ing in Environmental Management Systems (EMS), which responses to environmental management problems.
constitute the primary environmental interface between the Boland
engineering profession and private industry. EMS consists of
a core set of actions designed to 1) reduce the use of water, 575.801 Independent Project in Environmental
Graduate Programs
energy and non-renewable resources, 2) reduce air and water Engineering, Science, and Management
pollution caused by a firm’s operations, and 3) assure compli- This course provides students with an opportunity to carry
ance with environmental rules and regulations. Companies out a significant project in the field of environmental engi-
also use EMS to improve their corporate image resulting neering, science, technology, planning, or management as a
in increasing sales to environmentally conscious custom- part of their graduate program. The project is individually
ers, attracting investment from Socially Responsible Invest- tailored and supervised under the direction of a faculty mem-
ment (SRI) Funds, generating favorable public opinion, and ber and may involve conducting a semester-long research
improving employee morale. project, an in-depth literature review, a non-laboratory study,
Topics discussed include “greening the supply chain,” Life or application of a recent development in the field. The stu-
Cycle Analysis (LCA), the Leadership in Energy & Environ- dent may be required to participate in conferences relevant
mental Design (LEED) program for buildings, the Energy to the area of study. To enroll in this course, the student must
Star program for energy management, and the ISO 14000 be a graduate candidate in the environmental engineering,
program for environmental certification. The course will also science, and management program within the latter half of
discuss important, but less well-known EMS strategies like the degree requirements and must obtain the approval and
the impact of green roofs on HVAC costs, or the impact of support of a sponsoring faculty member in the Department
water costs from gray water management systems, all of which of Geography and Environmental Engineering. The proposal
are well documented by government and other organizations. description and completed required forms must be submitted
Curley prior to registration for approval by the student’s advisor and
the program chair. A maximum of one independent project
575.759 Environmental Policy Analysis
course may be applied toward the master’s degree or post-
The course explores the problem of developing appropriate master’s certificate.
public policies for the primary purpose of restoring, pre-
serving, and protecting aspects of the physical environment. Note: This course must be completed with a member of the
Emphasis is placed on the need to harmonize environmen- faculty of the Department of Geography and Environmental
tal science, human health, socio-political, technological, Engineering.
122
Information Assurance Admission Requirements

Applicants must meet the general requirements for admission
to a graduate program outlined in the Admission Require-
In today’s world, the need to protect an organization’s infor-
ments section of the catalog. In addition, applicants must
mation and systems from attack is of critical importance. The
have completed each of the following with a grade of A or B:
goal of information assurance (IA) is to enhance the security
of information and information systems by ensuring avail- A. One year of calculus (two semesters or three quarters)
ability, integrity, authentication, confidentiality, and non- B. One mathematics course beyond calculus (e.g., discrete
repudiation. This includes providing for the preservation and mathematics, linear algebra, or differential equations) –
restoration of systems by incorporating protection, detection, one term
and reaction capabilities. IA also focuses on risk management C. One year of introductory computer science including a
Graduate Programs
to address threats to new and existing systems. course in Java or C++, and data structures
The Master of Science in Information Assurance is D. A course in computer organization—one term
designed to appeal to a broad range of individuals. The pro-
gram balances theory with practice, providing students with Applicants who have not taken the prerequisite undergraduate
the knowledge and skills needed to protect and defend infor- courses may satisfy admission requirements by completing the
mation systems from attack. specified courses with grades of A or B. The program offers
Courses are offered in two concentration areas: net- the following undergraduate courses, which may be taken as
works and systems. The networks area focuses on protecting needed to satisfy the computer science prerequisites and the
information assets from network-based intrusion and from requirement for a mathematics course beyond calculus
attacks that are primarily focused on remote exploitation of 605.201 Introduction to Programming Using Java
protected systems. IA approaches that are effective in this 605.202 Data Structures
paradigm are explored in depth and a variety of defensive 605.203 Discrete Mathematics
approaches are investigated. In the systems area, attacks are 605.204 Computer Organization
explored from within the system boundary with an emphasis
on platform, operating systems and secure software develop- Advanced Certificate for Post-Master’s Study in
ment. Courses from both concentration areas may be inter- Information Assurance
leaved to satisfy the interests of the student. Applicants who have already completed a master’s degree in
Students may take courses at the Applied Physics Labo- a technical discipline are eligible to apply for an Advanced
ratory, the Montgomery County Campus, the Dorsey Cen- Certificate for Post Master’s Study in Information Assur-
ter, and online. Extensive computing facilities are available ance. Six one-term courses must be completed with grades
and can be reached from any of the sites or from home via of A or B within three years. At least five of the six courses
high-speed broadband Internet connections. The facilities must be information assurance courses and at least two of
also support a variety of software systems, applications, devel- the information assurance courses must be at the 700 level.
opment tools, and specialized labs. Students are allowed to take one elective course, subject to
advisor approval.
Program Committee
Course Requirements for Master’s Degree
Thomas A. Longstaff, Program Chair Ten courses, approved by an advisor, must be completed
Senior Professional Staff within five years. At least eight courses must be from the
Applied Physics Laboratory IA curriculum, which includes IA courses as well as selected
courses from computer science, security informatics, and
Eleanor Boyle Chlan, Associate Program Chair
applied mathematics and statistics. Three courses must be
Senior Lecturer in Computer Science from the same concentration area and at least two of the
Whiting School of Engineering information assurance courses must be 700-level. No more
John A. Piorkowski than one course with a grade of C, and no course with a grade
lower than C, may be counted toward the degree.
Applied Physics Laboratory Students may take up to two electives from other Whit-
ing School programs. Students who take electives from other
Michael Smeltzer programs must meet the specific course and program require-
Senior Professional Staff ments listed for each course. In the event that the student has
Applied Physics Laboratory transfer courses accepted, they will be considered electives.
Students should have had a course in networking prior
J. Miller Whisnant to taking concentration courses in the networks concentra-
Principal Professional Staff tion and a course in operating systems prior to taking cours-
Applied Physics Laboratory es in the systems concentration. If necessary, the following
123
courses can be taken and applied toward the master’s degree Graduate Courses by Concentration Area
in information assurance. The information assurance concentration areas including all
605.412 Operating Systems applicable courses from information assurance, computer
605.471 Principles of Data Communications science, and security informatics are as follows:
Networks
I. Systems
Additional Information for Course Requirements 695.401 Foundations of Information Assurance
Students may take up to two electives from outside informa- 695.411 Embedded Computer Systems—
tion assurance. Electives can be selected from computer science, Vulnerabilities, Intrusions, and Protection
electrical and computer engineering, and applied and compu- Mechanisms
Graduate Programs
tational mathematics. Other electives require approval of the 695.711 Java Security
information assurance program chair or vice-chair. Students 695.712 Authentication Technologies
who take electives from other programs must meet the specific
course and program requirements listed for each course.
Analysis
Graduate students not pursuing a master’s degree in
695.742 Digital Forensics Technologies and
information assurance should consult with their advisor to
Techniques
determine what courses must be successfully completed before
400- or 700-level information assurance courses may be 695.791 Information Assurance Architectures and
taken. It should be noted that 700-level courses are open only Technologies
to students who have been admitted with graduate status. 605.401 Foundations of Software Engineering
Please refer to the course schedule each term for dates, 605.412 Operating Systems
times, locations, fees, and instructors. 605.421 Foundations of Algorithms
Information Assurance—Online 605.715 Software Development for Real-Time
Students may complete the Master of Science in Information Embedded Systems
Assurance online, and all students may take advantage of online 605.716 Modeling and Simulation of Complex
offerings. While not all courses are available online, a complete Systems
program is offered and additional online courses are continually
being developed. This increases the flexibility of course offerings Systems Courses at Homewood
for students wishing to pursue studies in either the face-to-face 550.471 Cryptography and Coding
or online format, or a combination of both.
600.643 Advanced Topics in Computer Security
Course content is identical to that in the face-to-face
600.648 Secure Software Engineering
offerings but available in a paced, asynchronous mode over
the Internet. Recorded lectures with associated multimedia 650.457 Computer Forensics
content, are augmented with online discussions and week- 650.459 Software Vulnerability Analysis
ly synchronous office hours. Prospective and current stu-
dents should consult the EP website for the current online II. Networks
course offerings, course schedules, and procedures for online 695.421 Public Key Infrastructure and Managing
programs. E-Security
695.422 WWW Security
Foundation Courses 695.423 Intrusion Detection
The 400-level foundation courses must be taken before other 695.443 Introduction to Ethical Hacking
graduate courses, while the 700-level foundation course may 695.701 Cryptology
be completed any time after that during the course of the
IA degree:
695.741 Information Assurance Analysis
605.421 Foundations of Algorithms
Technologies
695.701 Cryptology
605.471 Principles of Data Communications
Networks
Foundation Course Waivers
One or more foundation courses can be waived if a student 605.472 Computer Network Architectures and
has received an A or B in equivalent courses. In this case, the Protocols
student may replace the waived foundation courses with the 605.474 Network Programming
same number of other graduate courses, and may take these 605.475 Protocol Design and Simulation
courses after all remaining foundation course requirements 605.771 Wired and Wireless Local and Metropolitan
have been satisfied. Area Networks
124
Networks Courses at Homewood III. Special Topics

550.438 Statistical Methods for Intrusion Detection 695.801 Independent Study in Information
600.642 Advanced Cryptographic Protocols Assurance I
695.802 Independent Study in Information
Assurance II
Course Descriptions
Graduate Programs
695.401 Foundations of Information Assurance Prerequisite: Basic understanding and working knowledge
This course surveys the broad fields of enterprise security and of computer systems and access to Intel-based PC hosting a
privacy, concentrating on the nature of enterprise security Microsoft Windows environment.
requirements by identifying threats to enterprise information Kalb
technology (IT) systems, access control and open systems,
695.421 Public Key Infrastructure and Managing
and system and product evaluation criteria. Risk manage-
E-Security
ment and policy considerations are examined with respect to
the technical nature of enterprise security as represented by This course describes public key technology and related secu-
rity issues. Public Key Infrastructure (PKI) components are
government guidance and regulations to support informa-
explained, and support for e-business and strong security ser-
tion confidentiality, integrity and availability. The course
vices required by various applications is described. The role of
develops the student’s ability to assess enterprise security risk
digital certificates, the importance of certificate policy and cer-
and to formulate technical recommendations in the areas
tification practices, and essential aspects of key management
of hardware and software. Aspects of security-related topics
that directly impact assurance levels and electronic services are
to be discussed include network security, cryptography, IT
addressed. The capabilities of PKI and digital signatures are
technology issues, and database security. The course addresses
examined in the context of the business environment, includ-
evolving Internet, Intranet, and Extranet security issues that
ing applicable laws and regulations. The essential elements for
affect enterprise security. Additional topics include access
successful PKI planning and rollout are discussed, and the
control (hardware and software), communications security,
state of PKI and interoperability issues are presented.
and the proper use of system software (operating system and
utilities). The course addresses the social and legal problems Mitchel
of individual privacy in an information processing environ-
695.422 WWW Security
ment, as well as the computer “crime” potential of such sys-
tems. The class examines several data encryption algorithms. This course examines issues associated with making web
applications secure. The principal focus is on server-side fea-
Ambuel, Heinbuch, Podell, Tarr tures such as CGI security, proper server configuration, and
firewalls. The course also investigates protection of the con-
695.411 Embedded Computer Systems— nection between a client and server by encrypting the data
Vulnerabilities, Intrusions, and Protection stream (e.g., with SSL) or by keeping certain data private
Mechanisms from the server system (e.g., via third-party transaction pro-
While most of the world is preoccupied with high-profile Net- tocols like SET, or the PCI DSS standard). Finally, the course
work-based computer intrusions, this online course examines explores client-side vulnerabilities associated with browsing
the potential for computer crime and the protection mecha- the web, such as system penetration, information breach,
nisms employed in conjunction with the embedded comput- identity theft, and denial-of-service attacks. Related topics
ers that can be found within non-networked products (e.g., such as malicious emails, web scripts, cookies, web bugs,
vending machines, automotive onboard computers, etc.). This spyware, and software security are also discussed. Labs and
course provides a basic understanding of embedded computer various server side demonstrations are included to enable
systems: differences with respect to network-based computers, students to probe more deeply into security issues and to
programmability, exploitation methods, and current intru- develop and test potential solutions.
sion protection techniques along with material relating to Prerequisite: 605.412 Operating Systems or basic knowledge
computer hacking and vulnerability assessment. The course of operating systems is recommended.
materials consist of a set of eight study modules and five case- Ching, McGuire
study experiments (to be completed at a rate of one per week)
and are augmented by online discussion forums moderated 695.423 Intrusion Detection
by the instructor. This course also includes online discussion This course explores the use of intrusion detection systems
forums that support greater depth of understanding of the (IDS) as part of an organization’s overall security posture. A
materials presented within the study modules. variety of approaches, models, and algorithms along with the
125
practical concerns of deploying IDS in an enterprise environ- (SAML), and Extensible Access Control Markup Language
ment will be discussed. Topics include the history of IDS, (XACML), are also surveyed. The course includes multiple
anomaly and misuse detection for both host and network programming assignments and a project.
environments, and policy and legal issues surrounding the Prerequisites: Basic knowledge of XML. 695.401 Foundations
use of IDS. The use of ROC (receiver operating character- of Information Assurance or 695.422 WWW Security would
istic) curves to discuss false positives and missed detection be helpful but is not required.
tradeoffs as well as discussion of current research topics will Ceesay, Llans
provide a comprehensive understanding of when and how
IDS can complement host and network security. TCPDump 695.712 Authentication Technologies
and Snort will be used in student assignments to collect and Authentication is the security process that validates the
Graduate Programs
analyze potential attacks. claimed identity of an entity, relying on one or more char-
Longstaff acteristics bound to that entity. An entity can be, but is not
limited to, software, firmware, physical devices, and humans.
695.443 Introduction to Ethical Hacking The authentication process involves at least two entities: the
This course exposes students to the world of computer hack- one requiring authentication and the one to be authenticat-
ing. The primary goal is to give students an understanding ed. This course explores the underlying technology, the role
of how vulnerable systems can be attacked as a means to of authentication in Information Assurance, evaluation of
motivate how they might be better defended. The class takes authentication processes, and the practical issues of authen-
a systems engineering view of hacking and emphasizes practi- tication. Several different categories of authentication will
cal exposure via hands-on assignments. Students are expected be explored: Human-to-Machine (humans using biomet-
to use a computer that will remain off all networks while they rics, tokens and passwords for verification by a machine),
complete assignments. Machine-to-Machine (one machine verifying another), and
Prerequisites: 635.411 Principles of Network Engineering or Machine-to-Human (humans verifying a machine). Case
605.471 Principles of Data Communication Networks, or studies of authentication system implementations are pre-
equivalent experience. sented. Related background is developed as needed, allow-
Llanso, Smeltzer ing students to gain a rich understanding of authentication
techniques and the requirements for using them in a secure
695.701 Cryptology system. Students will present a research project that reflects
This course provides an introduction to the principles and an understanding of key issues in authentication.
practice of contemporary cryptology. It begins with a brief Prerequisite: 695.421 Public Key Infrastructure and Manag-
survey of classical cryptographic techniques that influenced ing E-Security is recommended.
the modern development of cryptology. The course then Staff
focuses on contemporary work: symmetric block ciphers and
the Advanced Encryption Standard, public key cryptosys- 695.714 Reverse Engineering and Vulnerability
tems, digital signatures, authentication protocols, and cryp- Analysis
tographic hash functions. Pertinent ideas from complexity This course covers both the art and science of discovering
theory and computational number theory, which provide the software vulnerabilities. Beginning with the foundational
foundation for much of the contemporary work in cryptol- techniques used to analyze both source and binary code, the
ogy, are introduced, as needed, throughout the course. course will examine current threats and discuss the actions
May, Zaret needed to prevent attackers from taking advantage of both
known and unknown vulnerabilities. The course will cover
695.711 Java Security passive and active reverse engineering techniques in order to
This course examines security topics in the context of the discover and categorize software vulnerabilities, create patch-
Java language with emphasis on security services such as es and workarounds to better secure the system, and describe
confidentiality, integrity, authentication, access control, security solutions that provide protection from an adversary
and non-repudiation. Specific topics include mobile code, attempting to exploit the vulnerabilities. Techniques covered
mechanisms for building “sandboxes” (e.g., class loaders, include the use of static analysis, dynamic reverse engineering
namespaces, bytecode verification, access controllers, protec- tools, and fault injection via fuzzing to better understand and
tion domains, policy files), symmetric and asymmetric data improve the security of software.
encryption, hashing, digital certificates, signature and MAC McGuire
generation/verification, code signing, key management, SSL,
and object-level protection. Various supporting APIs are also 695.721 Network Security
considered, including the Java Cryptography Architecture This course provides concepts and issues pertaining to net-
(JCA) and Java Cryptography Extension (JCE). Security work security. Topics include fundamental theories and
APIs for XML and web services, such as XML Signature and applied cryptography and information security – encryption
XML Encryption, Security Assertions Markup Language algorithms, hash algorithms, message integrity checks, digi-
126
tal signatures, certification and accreditation, security assess- selected non-technical ramifications of data collection and
ment and authorization, authentication, security association, analysis, including anonymity, privacy, and legal constraints.
and security key management (generation, distribution, and Prerequisites: Familiarity with basic statistical analysis.
renewal). Consideration is given to emerging cryptographic 695.423 Intrusion Detection or 695.411 Embedded Com-
trends, such as the evolution and adoption of NSA’s (National puter Systems—Vulnerabilities, Intrusions, and Protection
Security Agency’s) Suite B cryptography. This course presents Mechanisms is recommended.
the network and network security architecture viewpoints Collins, Janies
of selected security issues, including various security mecha-
nisms, different layers of security protocols, different types 695.742 Digital Forensics Technologies and
of security attacks and threats and their counter measures or Techniques
Graduate Programs
mitigation. This includes consideration of NSA’s cyber lines Digital forensics focuses on the acquisition, identification,
of defense and NIST’s (National Institute of Standards and attribution, and analysis of digital evidence of an event
Technology’s) views on domains, logical reference models, and occurring in a computer or network. This course provides
security architectures. Discussions may include the system, a broader scientific understanding of the technologies and
domains, and logical security architecture viewpoints. From techniques used to perform digital forensics. In particular,
these viewpoints, consideration is given to network security various signature extraction techniques, detection, clas-
issues associated with a Next Generation Network (NGN) sification, and retrieval of forensically interesting patterns
security architecture for the merging of wired and wireless will be introduced. This will be complemented by studying
communications; and Internet Protocol version 6 implemen- fundamental concepts of data processing technologies like
tation and transition. For example, can a secure VoIP appli- compression, watermarking, steganography, cryptography,
cation communicate with a VoIP application on a device and multiresolution analysis. Emerging standards along
secured at the network layer, but not application layer? How with issues driving the changing nature of this topic will be
does VoIPv6 impact secure communication? Which layer explored. Anti-forensic techniques that are used to counter
should we provide security—IPsec or TLS? Security tunnel- forensic analysis will also be covered. Students will be exposed
ing or security transport? For anonymity and traceability, we to relevant theory, programming practice, case studies, and
discuss information to be hidden and who does not has access contemporary literature on the subject.
to the information, including how to provide non-traceability Prerequisite: 605.412 Operating Systems.
for certain people (e.g. military commanders), while provid-
Ahmed
ing traceability for certain situations (e.g. E911 calls). Further,
we consider how to prevent identity and service flaws. Lastly, 695.791 Information Assurance Architectures and
we discuss evolving network security and network security Technologies
architecture issues, such as the impacts of FCC Communi- This course explores concepts and issues pertaining to infor-
cation Assistance Law Enforcement Act (CALEA); and the mation assurance architectures (IAA) and technologies,
National Broadband Plan on NGN security. such as cryptographic commercial issues, layered security or
Prerequisites: 605.471 Principles of Data Communications defense-in-depth; methods and technologies for critical infor-
Networks or 635.411 Principles of Network Engineering. mation infrastructure protection (CIIP); cloud computing
Podell, Scoggins security architecture; and IAA and technologies applications.
Topics include selected U.S. and international CIIP; and
695.741 Information Assurance Analysis Comprehensive National Cybersecurity Initiative (CNCI)
This course provides students with an overview of analysis Trusted Internet Connections (TIC) multi-agency security
as it applies to information assurance. Analysis is a funda- information and event management (SIEM) issues. Commer-
mental part of the information assurance process and effec- cial IAA examples of network security architecture and SIEM
tive analysis informs policy, software development, network are also discussed for evolving enterprise wired and wireless
operations, and criminal investigations. To enable students services. The relationships of IAA and technologies with
to perform effective analysis, the focus of the course is on selected multi-tier architectures are discussed for applications
the analysis process and approach rather than on specific such as risk management and enterprise architecture (EA)
tools. Topics include the collection, use, and presentation disciplines; security for virtualized environments; secure soft-
of data from a variety of sources (e.g., raw network traffic ware engineering for services; and secure telecommunication
data, traffic summary records, and log data collected from for transport. IAA multi-tier architecture issues are illustrated
servers and firewalls). These data are used by a variety of with cases, such as the National Institute of Standards and
analytical techniques, such as collection approach evaluation, Technology’s (NIST) recommended three-tier approach for
population estimation, hypothesis testing, experiment con- organization-wide risk management; and a three-tier security
struction and evaluation, and constructing evidence chains controls architecture developed for cybersecurity standards for
for forensic analysis. Students will construct and critique CIIP that is compatible with guidance from NIST and the
an analytical architecture, construct security experiments, International Telecommunication Union-Telecommunication
and retroactively analyze events. The course will also cover Standardization Sector Study Group 17. Selected applied IAA
127
and technologies are examined in large-scale programs, such Prerequisites: 550.171 (110.204 with permission of the
as CNCI TIC; the Federal Aviation Administration (FAA) instructor) linear algebra, computing experience.
System Wide Information Management (SWIM) Program; Fishkind
and NIST Smart Grid Cyber Security Strategy, Architecture,
and High-Level Requirements. 600.642 Advanced Cryptographic Protocols
Prerequisites: 695.401 Foundations of Information Assur- This course will focus on advanced cryptographic protocols
ance or equivalent, and 605.471 Principles of Data Com- with an emphasis on open research problems (Applications).
munications Networks or 635.411 Principles of Network Prerequisites: 600.442, 600.443 or permission of the
Engineering. instructor.
Podell Ateniese
Graduate Programs
695.801 Independent Study in Information 600.643 Advanced Topics in Computer Security

Assurance I Topics vary but focus mainly on network perimeter pro-
This course permits graduate students in information assur- tection, host-level protection, authentication technologies,
ance to work with a faculty mentor to explore a topic in depth intellectual property protection, formal analysis techniques,
or conduct research in selected areas. Requirements for com- intrusion detection and similarly advanced topics.
pletion include submission of a significant paper or project. Prerequisites: any 600 level course in security, including
Prerequisites: Seven information assurance graduate courses 600.442/443/424 or permission of instructor.
including the foundation courses, three concentration area Rubin
courses, and two courses numbered at the 700 level or admis-
sion to the Advanced Certificate for Post-Master’s Study. 600.648 Secure Software Engineering
Students must also have permission from the instructor. This course examines best practices for designing secure sys-
tems, with particular emphasize on software engineering. We
695.802 Independent Study in Information review various criteria for designing secure systems and apply
Assurance II those principles to real systems. Students will be exposed to
Students wishing to take a second independent study in various techniques for analyzing system properties and for
information assurance should sign up for this course. verifying program correctness, and will be expected to use
Prerequisites: 695.801 Independent Study in Information that knowledge in examining existing protocols. Topics to be
Assurance I and permission of a faculty mentor, the student’s covered include the limits of techniques for software protec-
academic advisor, and the program chair. tion, such as code obfuscation, tamper-proofing and water-
marking, analysis of software-based attacks (and defenses),
550.438 Statistical Methods for Intrusion Detection timing attacks and leakage of information, type safety, and
This course will give an introduction to the data and meth- capability systems. A course project is required.
odologies of computer intrusion detection. The focus will be Monrose
on statistical and machine learning approaches to detection
of attacks on computers. Topics will include network moni- 650.457 Computer Forensics
toring and analysis, including techniques for studying the This course introduces students to the field of computer
Internet, and estimating the number and severity of attacks; forensics and it will focus on the various contemporary policy
network-based attacks such as probes and denial of service issues and applied technologies. Topics to be covered include:
attacks; host-based attacks such as buffer overflows and race legal and regulatory issues, investigation techniques, data
conditions; malicious code such as viruses and worms. Sta- analysis approaches, and incident response procedures for
tistical pattern recognition methods will be described for the Windows and UNIX systems. Homework in this course
detection and classification of attacks. Techniques for the will relate to laboratory assignments and research exercises.
visualization of network data will be discussed. The book will Students should also expect that a group project will be inte-
be supplemented with readings of various articles. grated into this course.
Prerequisite: 550.310 or 550.311, or equivalent. Lavine
Marchette 650.459 Software Vulnerability Analysis
This course will examine vulnerabilities in C source, stack
550.471 Cryptography and Coding
overflows, writing shell code, etc. Also, vulnerabilities in web
A first course in the mathematical theory of secure and applications: SQL Injection, cookies, forceful browsing, as
reliable electronic communication. Topics include finite well as vulnerabilities in C binary fuzzing, and exploit devel-
field arithmetic, error ciphers, one-time pads, the Enigma opment without source among other topics.
machine, one way functions, discrete logarithm, primality
Stubblefield
testing, secret key exchange, public key cryptosystems, digital
signatures, and key escrow.
128
Information Systems Engineering
Information Systems Michael Smeltzer

Engineering
J. Miller Whisnant
With information technology permeating all aspects of Principal Professional Staff
modern society, the creation and operation of contemporary Applied Physics Laboratory
information systems is an immensely complex challenge for
all organizations. Information systems engineering (ISE) is Admission Requirements
a multi-disciplinary program that focuses on the analysis, Applicants must meet the general requirements for admission
design, development, and integration of systems that enable to a graduate program, as stated in this catalog. In addition,
Graduate Programs
the effective and efficient use of information in today’s highly Information Systems Engineering master’s degree candidates
dynamic environment. Building on the disciplines of software must have taken one year of college math including one
engineering, systems engineering, information assurance, and semester of calculus or discrete mathematics and a course in
networking, ISE employs techniques and methodologies that programming using a modern programming language such
allow practitioners to create and manage complex informa- as Java or C++. Data structures may also be required, as deter-
tion systems to solve real-world problems. mined by an advisor, for students seeking to take selected
The Master of Science in Information Systems Engineer- courses from computer science and information assurance.
ing is designed to appeal to a wide range of individuals. The Click here for a list of courses requiring Data Structures.
program balances theory with practice, offers an extensive Applicants who have not taken the prerequisite under-
set of traditional and state-of-the-art courses, and provides graduate courses may satisfy admission requirements by
the flexibility to accommodate students with various back- completing the specified courses with grades of A or B. The
grounds. As a result, the program will appeal to engineers and program offers the following undergraduate courses, which
scientists seeking an applied technology program designed may be taken as needed to satisfy the prerequisites:
to enhance their ability to develop real-world information 605.201 Introduction to Programming Using Java
systems. By providing a broad-based education in the field, (online option)
the ISE program will allow students to design large-scale
605.202 Data Structures (online option)
information systems, develop efficient network architectures,
conduct complex systems analyses, and create sophisticated 605.203 Discrete Mathematics
distributed and secure systems.
Courses are offered across a wide range of topic areas, Advanced Certificate for Post-Master’s Study in
including software engineering, systems engineering, infor- Information Systems Engineering
mation assurance, network engineering, distributed com- Applicants who have already completed a master’s degree in
puting, information management, and human-computer a technical discipline are eligible to apply for the Advanced
interaction. Research and development interests of the fac- Certificate for Post-Master’s Study in Information Systems
ulty span the spectrum of information systems engineering. Engineering. Six one-term courses must be completed with
Students may take courses at the Applied Physics Labo- grades of A or B within three years. At least five of the six
ratory, the Montgomery County Campus, the Dorsey Cen- courses must be information systems engineering courses and
ter, and online. Extensive computing facilities are available at least two of the information systems engineering courses
and can be reached from any of the sites or from home. A must be at the 700 level. Students are allowed to take one
variety of software systems, applications, development tools, elective course, subject to advisor approval.
and specialized lab facilities are also supported.
Graduate Certificate in Information Systems
Program Committee Engineering
The Graduate Certificate is directed toward students who
Thomas A. Longstaff, Program Chair may not be currently interested in a master’s degree but are
Senior Professional Staff interested in taking specific graduate courses Five one-term
Applied Physics Laboratory courses must be completed with grades of A or B within three
John A. Piorkowski, Program Vice Chair years. At least four of the five courses must be information
Principal Professional Staff systems engineering courses. Students are allowed to take one
Applied Physics Laboratory elective course, subject to advisor approval. If the student
should decide to pursue the full master’s degree, all courses
Eleanor Boyle Chlan, Associate Program Chair will apply to the master’s degree provided they meet pro-
Senior Lecturer in Computer Science gram requirements, fall within the five-year time limit, and
Whiting School of Engineering the student declares his or her intention prior to the award
of the certificate. Applicants to the Graduate Certificate in
Information Systems Engineering must meet the general
129
requirements for admission to a graduate program and must Foundation Course Waivers
also meet the prerequisites for admission to Information One or more foundation courses can be waived if a student
Systems Engineering. has received an A or B in equivalent courses. In this case, the
student may replace the waived foundation courses with the
Course Requirements for Master’s Degree same number of other graduate courses, and may take these
Ten courses, approved by an advisor, must be completed courses after all remaining foundation course requirements
within five years. At least eight courses must be from the ISE have been satisfied.
curriculum, which includes ISE courses as well as selected
courses from computer science, information assurance, sys- Graduate Courses by Concentration Area
tems engineering and technical management. Three courses The ISE concentration areas—including all applicable courses
Graduate Programs
must be from the same concentration area and at least two from ISE, computer science, information assurance, systems
courses must be 700-level. No more than one course with a engineering, and technical management—are as follows:
grade of C, and no course with a grade lower than C, may be
counted toward the degree. I. Software Engineering
Students may take up to two electives from other Whit- 605.401 Foundations of Software Engineering
ing School programs. Students who take electives from other 605.402 Software Analysis and Design
programs must meet the specific course and program require- 605.404 Object Oriented Programming with C++
ments listed for each course. In the event that the student has
605.407 Agile Software Development Methods
transfer courses accepted, they will be considered electives.
605.408 Software Project Management
Graduate students not pursuing a master’s degree in
information systems engineering should consult with their 605.701 Software Systems Engineering
advisor to determine what courses must be successfully com- 605.702 Service-Oriented Architecture
pleted before 400- or 700-level ISE courses may be taken. 605.704 Object-Oriented Analysis and Design
700-level courses are open only to students who have been 605.708 Tools and Techniques of Software Project
admitted with graduate status. Management
Please refer to the course schedule each term for dates,
times, locations, fees, and instructors. II. Systems Engineering
635.401 Foundations of Information Systems
Information Systems Engineering—Online Engineering
Students may complete the Master of Science in Informa- 645.462 Introduction to Systems Engineering
tion Systems Engineering online, and all students may take
645.467 Management of Systems Projects
advantage of online offerings. While not all courses are avail-
able online, a complete program is offered and additional 645.742 Management of Complex Systems
online courses are continually being developed. This increases 645.753 Enterprise Systems Engineering
the flexibility of course offerings for students wishing to pur- 645.757 Foundations of Modeling and Simulation
sue studies in either the face-to-face or online format, or a in Systems Engineering
combination of both. 645.761 Systems Architecting
Course content is identical to that in the face-to-face 645.767 System Conceptual Design
offerings but available in a paced, asynchronous mode over
645.771 System of Systems Engineering
the Internet. Recorded lectures with associated multimedia
content, are augmented with online discussions and week- 595.460 Introduction to Project Management
ly synchronous office hours. Prospective and current stu- 595.763 Software Engineering Management
dents should consult the EP website for the current online
course offerings, course schedules, and procedures for online III. Information Assurance
programs. 635.476 Information Systems Security
Foundation Courses 695.411 Embedded Computer Systems—
All students working toward a master’s degree in information Vulnerabilities, Intrusions, and Protection
systems engineering are required to take the following three Mechanisms
foundation courses before taking other graduate courses: 695.421 Public Key Infrastructure and Managing
635.401 Foundations of Information Systems E-Security
Engineering 695.422 WWW Security
605.401 Foundations of Software Engineering 695.423 Intrusion Detection
695.401 Foundations of Information Assurance 695.443 Introduction to Ethical Hacking
130
695.711 Java Security 605.486 Mobile Application Development for the

695.712 Authentication Technologies Android Platform
695.714 Reverse Engineering and Vulnerability 605.782 Web Application Development with Java
Analysis 605.784 Enterprise Computing with Java
695.721 Network Security 605.785 Web Services with SOAP and REST:
695.791 Information Assurance Architectures and Frameworks, Processes, and Applications
Technologies 605.786 Enterprise System Design and
Implementation
IV. Network Engineering 605.787 Rich Internet Applications with Ajax
Graduate Programs
635.411 Principles of Network Engineering
VI. Information Management
635.711 Advanced Topics in Network Engineering
635.421 Principles of Decision Support Systems
605.441 Principles of Database Systems
Additional Network Engineering Choices 605.443 The Semantic Web
For students with appropriate backgrounds, the following 605.444 XML Design Paradigms
courses may be taken toward the network engineering con-
605.445 Artificial Intelligence
centration. Advisor approval and permission of the instructor
is required. 605.741 Distributed Database Systems: Cloud
Computing and Data Warehouses
605.473 High-Speed Networking Technologies
605.744 Information Retrieval
605.477 Internetworking with TCP/IP I
605.478 Cellular Communications Systems VII. Human-Computer Interaction
605.771 Wired and Wireless Local and Metropolitan 635.461 Principles of Human-Computer Interaction
Area Networks 605.462 Data Visualization
605.777 Internetworking with TCP/IP II
605.778 Voice Over IP Special Topics
635.792 Management of Innovation
V. Enterprise and Web Computing
635.795 Information Systems Engineering
635.482 Website Development Capstone Project
635.483 E-Business: Models, Architecture, 635.801 Independent Study in Information
Technologies and Infrastructure Systems Engineering I
605.481 Principles of Enterprise Web Development 635.802 Independent Study in Information
605.484 Agile Development with Ruby on Rails Systems Engineering II
Course Descriptions
635.401 Foundations of Information Systems 635.411 Principles of Network Engineering
Engineering This course provides an overview of networking and telecom-
Creating and operating large-scale information systems munications. Topics include analog and digital voice; data,
requires a holistic approach that manages the blending imaging, and video communications fundamentals, includ-
of software, hardware, networks, and security inherent in ing signaling and data transmissions; and basic terminology.
modern systems. This course introduces key elements and The course also covers networking and telecommunication
processes required for designing, analyzing, developing, and techniques, applications technology, and networking topolo-
integrating complex information systems. The course focuses gies and internetworking architectures. Specific areas dis-
on the systems engineering approach with specific emphasis cussed include LAN system fundamentals, such as Ethernet
on design, development, and deployment. Topics covered and token ring; and WAN system fundamentals, such as
include requirements engineering, architecture development, circuit-switching, packet-switching, X.25, frame relay, and
security engineering, cost-benefit analysis, information and Asynchronous Transfer Mode. The open systems intercon-
networking technologies, and operations. nection (OSI) reference model standard is also described
Chavis, Pascale and compared with other network layering standards used
in telecommunications.
Burbank, Gump, Romano
131
635.421 Principles of Decision Support Systems 635.483 E-Business: Models, Architecture,

This course focuses on the use and application of information Technologies and Infrastructure
systems to support the decision-making process. Knowledge- This course explores fundamental aspects of the e-Business
based systems, neural networks, expert systems, electronic phenomenon that is currently sweeping through the global
meeting systems, group systems and web-based systems are economy, as well as design principles and technology used
discussed as a basis for designing and developing highly effec- to build computer-based systems in order to support notion
tive decision support systems. Data models, interactive proof e-Business. E-Business (electronic business) is an umbrella
cesses, knowledge-based approaches and integration with term, an interdisciplinary topic encompassing both busi-
database systems are also described. Theoretical concepts are ness and technology. This topic addresses variety of business
applied to real-world applications. activities, business processes, and strategic business functions
Graduate Programs
Felikson conducted over the Internet in order to service customers, to

collaborate with business partners and to maintain and sus-
635.461 Principles of Human-Computer Interaction tain competitive advantage in the networking economy. The
Well-designed human-computer interaction is critical to the course introduces contemporary management philosophies as
success of computer and information systems. This course they have come to be used for the marketing, selling, and dis-
focuses on the HCI design process and covers the underlying tribution of goods and services through the Internet and other
scientific principles, HCI design methodology, and the user- electronic media. The course explores approaches of defining
interface technology used to implement HCI. Topics include drivers and use cases of conducting electronic business. This
human cognition, HCI theories, user observation and task course provides an overview of principles and analysis of dif-
analysis, prototyping and evaluation techniques, user inter- ferent models of electronic business. It enables students to
face modalities and graphical user interface components, and design effective e-Business models built on a foundation of
accessibility. Selected additional topics may include HCI in business concepts, knowledge of the e-Business environment
website design, support of collaborative work, human inter- and an understanding of the influence of the Internet on busi-
action with automation, and ubiquitous computing. Student ness stakeholders, including customers, suppliers, manufac-
design projects are an integral part of the course. Reading the turers, service makers, regulators, managers, and employees.
current HCI research literature is also required. In this course students undertake value analysis and learn to
Montemayer describe value propositions. Business architecture and soft-
ware infrastructure used to engineer and build e-Business
635.476 Information Systems Security systems will be explained. The modern information technolo-
This course describes the systems security engineering process gies associated with the delivery of business capabilities over
with a focus on security during the design and implementation the Internet will be discussed. The course content will be
of information systems. Topics include design principles, risk reinforced by a variety of assignments.
assessment, and security metrics. The course will present the Chittargi, T. Felikson
processes that have been defined and published by the federal
government for designing and evaluating secure information 635.711 Advanced Topics in Network Engineering
systems. This course is designed to provide an advanced treatment
of key topic areas in networking and telecommunications
Resch
for students who have mastered the basic principles of net-
635.482 Website Development work engineering. Key operational systems, protocols, and
This course covers the design and implementation of web- technologies are explored in local, wide, metro-area, storage,
sites. Various web standards, as developed by the World Wide and wireless networking. Major topic areas include advanced
Web Consortium and by browser manufacturers are studied. LAN/WLAN technologies (Power over Ethernet, IEEE
HTML 4.01 and XHTML 1.0 specifications are covered, 802.1x authentication, VLANs, link aggregation, etc.), Stor-
including topics such as text control, images, hypertext links, age Area Network technologies, Virtualized/Cloud network-
tables, frames and embedded objects (e.g., video and applets). ing, Optical Networking, IPv6, Spanning Tree and Dynamic
Cascading Style Sheets (CSS1 and CSS2), a web scripting IP routing protocols, “Last-Mile” Networking (DSL, Cable
language (such as Javascript), CGI programming, and their Modems, etc.), Label Switching, Multicasting, and Multicast
use in Dynamic HTML are also covered. Design and devel- routing, Real-time application support mechanisms, Qual-
opment topics include ease of navigation, download time, ity of Service protocols, Advanced Transport Layer topics
maintaining a consistent look and feel across multiple pages, (Congestion Notification, TCP options, etc.), and Network
making a website work well across multiple browsers, and Security (address translation, VPNs, stateful inspection, etc).
web server selection and configuration. A major component of the course will be a design project on
one of the topic areas covered in the class.
Noble
Prerequisites: 635.411 Principles of Network Engineering or
605.471 Principles of Data Communications Networks or
equivalent.
Romano
132
635.792 Management of Innovation 635.801 Independent Study in Information Systems

A critical issue for entrepreneurs and technical managers is Engineering I
how to translate opportunity into competitive advantage. This course permits graduate students in Information Systems
This course explores the management of innovation, includ- Engineering to work with a faculty mentor to explore a topic
ing the technical transition of applied R&D into products, in depth or conduct research in selected areas. Requirements
the planning and launching of new products, and product for completion include submission of a significant paper.
management. Management of discontinuous technologies Prerequisites: Seven ISE graduate courses including the foun-
will be explored. The impact of competition by the intro- dation courses, three concentration area courses, and two
duction of new discontinuous technology will be addressed. courses numbered 635.7xx; or admission to the advanced
Managing engineers through the creative process, as well as certificate for post-master’s study. Students must also have
Graduate Programs
innovation and technological evolution will be covered. The permission of a faculty mentor, the student’s academic advi-
course includes both formal and guest lectures. Case studies sor, and the program chair.
will be used as an important learning vehicle.
Husick 635.802 Independent Study in Information Systems
Engineering II
635.795 Information Systems Engineering Students wishing to take a second independent study in infor-
Capstone Project mation systems engineering should sign up for this course.
This course is designed for students who would like to con- Prerequisites: 635.801 Independent Study in Information
duct a major independent project involving a substantial Systems Engineering I and permission of a faculty mentor,
enterprise information system design that builds upon ele- the student’s academic advisor, and the program chair.
ments of the ISE curriculum. The project includes require- Note: Students may not receive graduate credit for both
ments analysis, IT architecture design, network design, 635.802 and 635.795 Information Systems Engineering
software integration, decision support applications, and Capstone Project.
deployment planning. Interim deliverables include presenta-
tions to the course advisors. Project proposals are required
and a mentor will be assigned to the student.
Prerequisites: Completion of eight courses in the ISE curricu-
lum, including all ISE foundation courses.
Note: Students may not receive graduate credit for both
635.795 and 635.802 Independent Study in Information
Systems Engineering II.
Staff
133
Materials Science and Engineering
Materials Science and chemistry. Applicants must meet the general requirements
for graduate study outlined in this catalog. The program
Engineering
committee is willing to consider applicants who do not meet
the general admission requirements in exceptional cases.
Individuals who desire a non-degree status for taking
Materials science and engineering is concerned with the
courses may request consideration for Special Student status.
structure, processing, properties, and applications of mate-
Regardless of level, courses taken while a Special Student do
rials. Materials scientists investigate how the structure and
not necessarily count toward fulfillment of degree require-
composition of materials affect their properties and perfor-
ments if the student is subsequently accepted as a degree
mance. Materials engineers develop, modify, and apply mate-
candidate. This status is normally extended for one year with
rials to specific technological applications.
Graduate Programs
reapplication required for continuation.

The JHU Department of Materials Science and Engi-
neering offers three different graduate degrees; the Ph.D.,
Course Requirements
the M.S.E. (Master of Science in Engineering), and the
The Master of Materials Science and Engineering degree is
M.M.S.E. (Master of Materials Science and Engineering).
awarded after successful completion of 10 one-term courses
The M.M.S.E. is offered through the Engineering for Profes-
within five years. All students are required to take 515.401
sionals program and is described in detail below. Information
Structure and Properties of Materials and 515.402 Thermo-
about the Ph.D. and M.S.E. can be obtained from the Arts
dynamics and Kinetics. Of the remaining eight electives at
and Sciences/Engineering undergraduate and graduate pro-
least one must be 600-level or higher. Courses offered by the
grams catalog.
Department of Materials Science and Engineering are accept-
The M.M.S.E. degree is designed specifically as a part-
able as electives. Students interested in taking the 515.730-
time degree that can be completed by taking courses in the
731 Materials Science and Engineering Project must get prior
late afternoon or evening. It is viewed as a terminal degree
approval from the departmental coordinator and be assigned
and is generally not considered sufficient preparation to con-
an advisor.
tinue toward the Ph.D. Those interested in pursuing a Ph.D.
Below is a list of acceptable course electives offered by
degree should consider applying to the department for the
other departments. Students wishing to take a course not
M.S.E. degree. Please note that the application materials for
on the list to satisfy the degree requirements must get prior
the Ph.D. or M.S.E. degrees are different from the EP appli-
approval from the departmental coordinator. The program of
cation used in applying for the M.M.S.E. degree.
10 courses that the student plans to pursue must be approved
The Department of Materials Science and Engineering
by the department coordinator. Students may also select elec-
has active research programs in biomaterials, nanomaterials
tives from the courses listed below under the Nanotechnol-
and nanotechnology, electrochemistry, thin films, mechanics
ogy Option.
of materials, electronic materials and physical metallurgy.
525.406 Electronic Materials
Program Committee 525.407 Introduction to Electronic Packaging
Robert C. Cammarata, Program Chair 530.753 Fatigue
Professor, Materials Science and Engineering 535.406 Advanced Strength of Materials
Whiting School of Engineering 535.720 Analysis and Design of Composite
Structures
James B. Spicer
Professor, Materials Science and Engineering 545.426 Introduction to Biomacromolecules
Whiting School of Engineering 545.440 Micro and Nanotechnology
Jennifer Sample 565.729 Structural Mechanics
Senior Professional Staff 585.409 Mathematical Methods for Applied
Applied Physics Laboratory Biomedical Engineering
585.608 Biomaterials
Timothy Foecke
Staff Materials Scientist 585.609 Cell Mechanics
National Institute of Standards and Technology 585.618 Biological Fluid and Solid Mechanics
Admission Requirements Engineering
The Master of Materials Science and Engineering (M.M.S.E.) 615.451 Statistical Mechanics and Thermodynamics
program is best suited to students who have received under-
graduate degrees in engineering or science. Applicants are
expected to have completed a mathematics sequence through 615.757 Solid State Physics
differential equations and courses in general physics and 615.760 Physics of Semiconductor Devices
134
Nanotechnology
Option
Nanotechnology Course Requirements
Students enrolled in the Master of Science in Materials Sci-
ence and Engineering program can elect to pursue the Nano-
technology Option. Please see page 1XX for a full description
of this option.
Graduate Programs
Course Descriptions
510.407 Biomaterials II (enzymes for biosynthesis, motors, pumps); protein synthesis
This course focuses on the interaction of biomaterials with using recombinant nucleic acid methods; advanced materials
the biological system and applications of biomaterials. Topics development; interactions of biopolymers, lipid membranes,
include host reactions to biomaterials and their evaluation, and their complexes; mean field theories, fluctuation and
cell-biomaterials interaction, biomaterials for tissue engi- correlation effects; self-assembly in biomolecular materials;
neering applications, biomaterials for controlled drug and biomedical applications; and characterization techniques.
gene delivery, biomaterials for cardiovascular applications, Note: Same as 510.626.
biomaterials for orthopedic applications, and biomaterials Hristova
for artificial organs.
Note: Also listed as 510.607. 510.604 Mechanical Properties of Materials
Mao This course introduces the properties and mechanisms that con-
trol the mechanical performance of materials. Topics include
510.420 Topics in Biomaterials mechanical testing, tensor description of stress and strain, iso-
This course concentrates on molecular structure-property tropic and anisotropic elasticity, plastic behavior of crystals,
relationships in biomaterials. Special focus will be given to dislocation theory, mechanisms of microscopic plasticity, creep,
polymers, hydrogels, biodegradable materials, and natural fracture, and deformation and fracture of polymers.
materials. The design of artificial biomaterials for biosen- Prerequisite: 510.601 or permission of instructor.
sors, drug delivery, and medical implants are considered Staff
along with the factors that influence the biocompatability
of these materials. 510.605 Electronic, Optical, and Magnetic
Prerequisite: Introductory Chemistry. Properties of Materials
Yu This course is an overview of electrical, optical, and magnetic
properties arising from the fundamental electronic and atom-
510.422 Micro- and Nano-Structured Materials and ic structure of materials. Continuum materials properties are
Devices developed through examination of microscopic processes.
Almost every materials property changes with scale. We will Topics to be covered include quantum mechanical structure
examine ways to make micro- and nano-structured materials of solids including electronic band structure; electrical, ther-
and discuss their mechanical, electrical, and chemical prop- mal and ionic conduction; response of materials to electro-
erties. Topics include the physics and chemistry of physical magnetic fields including dielectric permittivity, ferroelectric
vapor deposition, thin film patterning, and microstructural materials and piezoelectricity; magnetic behavior including
characterization. Particular attention will be paid to cur- paramagnetism and ferromagnetism, magnetic permeability,
rent technologies including computer chips and memory, magnetic domains, and magnetostriction; interactions of
thin film sensors, diffusion barriers, protective coatings, and electromagnetic radiation with materials (absorption, reflec-
microelectromechanical devices (MEMS). tion, refraction, and scattering, electo- and magneto-optic
Note: Also listed as 510.622. effects); and superconductivity. Emphasis will be placed on
both fundamental principles and applications in contempo-
510.426 Biomolecular Materials rary materials technologies.
Topics covered by this course include structure and function Prerequisite: 510.601.
of cellular molecules (lipids, nucleic acids, proteins, and car- Staff
bohydrates); structure and function of molecular machines
135
510.606 Chemical and Biological Properties of solid/liquid interfaces including electron transfer, photoef-
Materials fects, adsorption, catalysis, etching, and oxide formation are
This course introduces the chemical and biological prop- covered. Relevant experimental methods, including surface
erties of organic and inorganic materials. Topics include analytical techniques, are reviewed. Examples of applications,
an introduction to polymer science, polymer synthesis, including photovoltaic devices and solar cells, are discussed.
chemical synthesis and modification of inorganic materi- Searson
als, biomineralization, biosynthesis and properties of natural
materials (proteins, DNA and polysaccharides), structure- 510.611-612 Solid State Physics
property relationships in polymeric materials (synthetic poly-
mers and structural proteins), and materials for biomedical This course provides an introduction to solid state physics for
advanced undergraduates and graduate students in physical
Graduate Programs
applications.
science and engineering. Topics include crystal structure of
Prerequisite: Undergraduate chemistry and biology, or per-
solids; band theory; thermal, optical, and electronic proper-
mission of instructor.
ties; transport and magnetic properties of metals, semicon-
Staff ductors, and insulators; and superconductivity. The concepts
and applications of solid state principles in modern elec-
510.607 Biomaterials II
tronic, optical, and structural materials are also discussed.
This course focuses on the interaction of biomaterials with
the biological system and applications of biomaterials. Topics Poehler
include host reactions to biomaterials and their evaluation,
cell-biomaterials interaction, biomaterials for tissue engi- 510.616 Applications of X-Ray Diffraction
neering applications, biomaterials for controlled drug and Practical aspects of structural characterization with x-ray dif-
gene delivery, biomaterials for cardiovascular applications, fraction. Topics include orientation of single crystals; lattice
biomaterials for orthopedic applications, and biomaterials parameter measurement; phase identification; quantitative
for artificial organs. phase analysis; crystallographic texture determination; stress
Note: Also listed as 510.407. measurement; diffraction from long-period structures includ-
Mao ing superlattices, multilayers, and layered molecular solids;
and scattering from liquids and amorphous solids. The course
510.608 Electrochemistry will combine lectures with several laboratory exercises intend-
Topics covered by this course include thermodynamics of ed to give students experience in data collection and analysis
electrochemical interfaces, including electrochemical poten- for a variety of diffraction techniques.
tial, the Nernst equation, ion-solvent interactions, and Staff
double layer theory; charge transfer kinetics for activation
and diffusion controlled processes; and analysis of kinetics 510.617 Advanced Topics in Biomaterials
at various electrodes, including redox reactions, metal-ion
This course reviews recent advances in biomaterials focusing on
electrodes, and semiconductor electrodes. Electroanalyti-
the design principles in polymeric materials and scaffolds. It will
cal techniques are also discussed, including those related to
cover topics from molecular designs of polymeric biomaterials,
bioelectrochemistry and semiconductor electrochemistry.
materials surface engineering, and processing of polymeric scaf-
Selected reactions of technological importance are evaluated,
folds, to manipulation of cellular behaviors through materials
including the hydrogen evolution reaction, oxygen reduc-
engineering. Specific examples in cell and tissue engineering,
tion, electrodeposition, and energy generation and storage.
and drug and gene delivery, will be discussed.
Undergraduate prerequisite: Introductory chemistry or per-
mission of instructor. Staff
Searson
510.618 Electronic and Photonic Processes and
510.609 Electrochemistry Lab Devices
A series of laboratory experiments is used to illustrate the This course is intended for advanced undergraduates and grad-
principles of electrochemistry. uate students and will cover the fundamentals and properties of
Prerequisite: 510.608 or permission of instructor. electronic and optical materials and devices. Subject matter will
include a detailed and comprehensive discussion of the physical
Searson
processes underlying modern electronic and optical devices.
510.610 Chemistry and Physics of Semiconductor Detailed descriptions of modern semiconductor devices such
Surfaces as lasers and detectors used in optical communications and
Basic principles of bonding, thermodynamics of crystals, information storage and processing will be presented. Cross-
surface energy, space charge effects, and potential distribu- listed with Electrical and Computer Engineering.
tions at phase boundaries are reviewed. Processes related to Staff
136
510.619 Biopolymers Synthesis using recombinant nucleic acid methods; advanced materials
In this course, we will review the current synthetic meth- development; interactions of biopolymers, lipid membranes,
ods for preparing biopolymers of both synthetic and natu- and their complexes; mean field theories, fluctuation and
ral origin. The class will focus mainly on polypeptides and correlation effects; self-assembly in biomolecular materials;
polysaccharides, but natural polyesters and polynucleotides biomedical applications; and characterization techniques.
(DNA and RNA) will be covered as well. Some of the main Note: Also listed as 510.426.
topics are solid phase peptide synthesis, ring-opening polym- Hristova
erization for polypeptide synthesis, recombinant DNA and
bacterial protein synthesis, bacterial production of biode- 510.636 Electronic Materials Science
gradable polyester, and chemical and biological engineering This course provides an introduction to semiconductor device
Graduate Programs
of polysaccharides. physics, including band structure, current flow, capacitance,
Yu and recombination. Also covered are barriers and junctions,
transistors, crystallography and crystalline defects; processing
510.620 Metallic Glasses (ion implantation, thermal oxidation, metallization, reaction
This course covers the structure, properties, and processing of kinetics, and diffusion barriers); heterostructures and hetero-
metallic glasses and amorphous thin films. Particular empha- epitaxy; and assembly and packaging.
sis is on structural characterization of amorphous materials, Searson
including X-ray and neutron scattering, EXAFS, small-angle
scattering, and anomalous X-ray scattering. Also covered are 510.650 Principles of Quantum Physical Interactions
phase transformations in amorphous materials, including
Topics covered by this course include foundational quan-
phase separation and crystallization; mechanical and mag-
tum-mechanical study of nanometer-scale electronic and
netic properties of metallic glasses; thermodynamics; and
optoelectronic materials structures, principles of quantum
kinetic considerations in the production of metallic glasses.
physics, stationary-state eigenfunctions and eigenvalues for
Hufnagel one-dimensional potentials, interaction with the electromag-
netic field, electronic conduction in solids, surface and inter-
510.622 Micro-and Nano-Structured Materials and face effects, tunneling microscopy, and spectroscopy.
Devices
Prerequisites: 110.201 and 110.302 or equivalent, 510.311.
Almost every materials property changes with scale. We will
examine ways to make micro and nano-structured materials Spicer
and discuss their mechanical, electrical, and chemical prop-
510.657 Materials Science of Thin Films
erties. Topics include the physics and chemistry of physical
vapor deposition, thin film patterning, and microstructural The processing, structure, and properties of thin films are
characterization. Particular attention will be paid to cur- discussed emphasizing current areas of scientific and techno-
rent technologies including computer chips and memory, logical interest. Topics include elements of vacuum science
thin film sensors, diffusion barriers, protective coatings, and and technology; chemical and physical vapor deposition pro-
microelectromechanical devices (MEMS). cesses; film growth and microstructure; chemical and micro-
structural characterization methods; epitaxy; mechanical
Note: Also listed as 510.422.
properties such as internal stresses, adhesion, and strength;
Ma and technological applications such as superlattices, diffusion
barriers, and protective coatings.
510.624 Theory of X-ray Diffraction
Weihs
This course provides an introduction to diffraction theory
and the uses of diffraction in structural characterization of 510.661 Alloy Stability and Phase Diagrams
materials. Topics include X-ray scattering by atoms, kine-
This course examines the fundamentals of alloy theory and
matic theory, Fourier series methods, diffraction from single
phase diagram modeling to understand the formation, sta-
crystals and polycrystalline materials, diffraction from mul-
bility, and evolution of alloy phases and microstructures.
tilayers, scattering by liquids and amorphous solids, small-
Topics to be covered include structures of intermediate alloy
angle scattering, and dynamic theory.
phases such as electron phases, Laves phases, interstitial phas-
Prerequisite: 510.601. es, valency compounds, and superlattices; stability criteria
Hufnagel of solid solutions and intermediate alloy phases, including
Hume-Rothery rules, theories of ordering, electronic theories
510.626 Biomolecular Materials of solid solubility and alloy stability, and elastic instability;
Topics covered by this course include structure and function thermodynamic and kinetic analysis of phase and micro-
of cellular molecules (lipids, nucleic acids, proteins, and car- structural instability due to different driving forces: chemical,
bohydrates); structure and function of molecular machines strain, interfacial, gradient, etc.; balance of kinetic stability
(enzymes for biosynthesis, motors, pumps); protein synthesis and thermodynamic instability: formation of highly meta-
137
stable or unstable phases far from equilibrium; and calcula- 515.416 Introduction to Nanotechnology
tions of the phase stability ranges in terms of equilibrium or Nanoscale science and nanotechnology are broad, interdis-
metastable binary or multi-component phase diagrams using ciplinary areas, encompassing not just materials science but
CALPHAD modeling. everything from biochemistry to electrical engineering and
Ma more. This will be a survey course introducing some of the
fundamental principles behind nanotechnology and nano-
510.665 Advanced Topics in Thermodynamics of materials, as well as applications of nanotechnology. The
Materials role of solid state physics and chemistry in nanotech will
Selected areas of thermodynamics will be examined in be emphasized. Nanoscale tools such as surface probe and
depth with the aim of understanding the ideas and assump- atomic force microscopy, nanolithography, and special topics
tions underlying results of importance to materials science. such as molecular electronics will also be covered.
Attempts will be made to be as rigorous as possible without Sample
losing sight of the physical meaning. The theories and models
obtained will be evaluated critically to determine their valid- 515.417 Nanomaterials
ity and limitations. Topics to be covered include review of This course will take an in-depth look at nanomaterials
the traditional development of the laws of thermodynamics; discussed in Introduction to Nanotechnology. However,
alternate formulations (Carathéodory, Truesdell, single axiom this course stands alone with no prerequisite. Theory and
approach); equilibrium thermodynamics of Gibbs; thermo- concepts of nanomaterials will be covered, including the
dynamics of solids; thermodynamics of surfaces; principles chemistry and physics of nanomaterials. The course will also
of statistical thermodynamics; critical phenomena; third law; focus on major classes of nanomaterials, including carbon
and nonequilibrium thermodynamics (“rational” thermody- nanotubes, nanostructured materials, nanowires, nanopar-
namics, thermodynamics of irreversible processes, absolute ticles, nanoclays, and other nanomaterials. Applications of
reaction rates). nanomaterials to technology areas of interest to the class will
Cammarata also be discussed.
Sample, Zhang
515.401 Structure and Properties of Materials
Topics include types of materials, bonding in solids, basic 515.730-731 Materials Science and Engineering
crystallography, crystal structures, tensor properties of materi- Project
als, diffraction methods, crystal defects, amorphous materials. This course is an individually tailored, supervised project that
Staff offers research experience through work on a special problem
related to each student’s field of interest. On completion of
515.402 Thermodynamics and Kinetics of Materials this course, a written essay must be submitted. Final approval
Topics include laws of thermodynamics, equilibrium of of the essay will be given by the faculty advisor.
single and multiphase systems, chemical thermodynamics, Prerequisites: All other course work should be completed
statistical thermodynamics of solid solutions, equilibrium before this project begins (or at least completed concurrently
phase diagrams, chemical kinetics, diffusion in solids; nucle- with this project). Consent of advisor is required.
ation and growth processes, coarsening, and glass transition. Note: This course is available only to students in the Master
Staff of Materials Science and Engineering program.
Staff
138
Materials and Condensed Matter Option
Materials and Applied Physics

615.447 Fundamentals of Sensors and Sensor Systems
Condensed Matter 615.481 Polymeric Materials

Option 615.747 Sensors and Sensor Systems
615.757 Solid State Physics
Materials and condensed matter, technical areas crossing the
615.760 Physics of Semiconductor Devices
boundaries of physics and various engineering disciplines, are
of growing importance in all our technical activities ranging
from sensor development to space science. Although there Electrical and Computer Engineering
is a separate degree in materials science and engineering, 525.406 Electronic Materials
students can elect to pursue a concentration in materials and 525.421 Introduction to Electronics and the Solid
condensed matter from the applied physics curriculum. This State I
concentration offers students the opportunity to become
well-grounded in the principles of physics and then apply Materials Science and Engineering
this knowledge to study leading-edge topics in materials and 510.420 Topics in Biomaterials
condensed matter. To do this, students can complete a com-
510.604 Mechanical Properties of Materials
bination of courses from the applied physics, materials sci-
ence and engineering, electrical and computer engineering, 510.606 Chemical and Biological Properties of
and chemical and biomolecular engineering disciplines. The Materials
wide variety of courses from these four areas allows students, 510.622 Micro-and Nano-Structured Materials and
working with advisors, to structure a program meeting their Devices or
professional development needs in materials. 515.417 Nanomaterials
Admission Requirements Chemical and Biomolecular Engineering

540.427 Introduction to Polymer Science
to a graduate program outlined in this catalog. In addition,
540.439 Polymer Nanocomposites
applicants must meet the specific program requirements for
applied physics (see Graduate Admissions section). The spe-
cial option in materials and condensed matter will be noted Materials Science and Engineering
on the student’s transcript. Materials science and engineering is concerned with the
structure, processing, properties, and applications of mate-
Course Requirements rials. Materials scientists investigate how the structure and
A total of 10 one-term courses must be completed. Students composition of materials affect their properties and perfor-
specializing in materials and condensed matter must com- mance. Materials engineers develop, modify, and apply mate-
plete 615.480 Materials Science, plus three of the first six rials to specific technological applications.
courses listed below. The JHU Department of Materials Science and Engi-
neering offers three different graduate degrees; the Ph.D.,
the M.S.E. (Master of Science in Engineering), and the
Engineering
M.M.S.E. (Master of Materials Science and Engineering).
615.442 Electromagnetics The M.M.S.E. is offered through the Engineering for Profes-
615.451 Statistical Mechanics and Thermodynamics sionals program and is described in detail below. Information
615.453 Classical Mechanics about the Ph.D. and M.S.E. can be obtained from the Arts
615.454 Quantum Mechanics and Sciences/Engineering undergraduate and graduate pro-
615.465 Modern Physics grams catalog.
The M.M.S.E. degree is designed specifically as a part-
615.480 Materials Science
time degree that can be completed by taking courses in the
late afternoon or evening. It is viewed as a terminal degree
Additional Six Courses
and is generally not considered sufficient preparation to con-
Of the remaining six courses, four or more must be from
tinue toward the Ph.D. Those interested in pursuing a Ph.D.
the courses listed below selected from the Applied Physics,
degree should consider applying to the department for the
Electrical and Computer Engineering, Materials Science and
M.S.E. degree. Please note that the application materials for
Engineering, and Chemical and Biomolecular Engineering
the Ph.D. or M.S.E. degrees are different from the EP appli-
curricula.
cation used in applying for the M.M.S.E. degree.
The Department of Materials Science and Engineering
has active research programs in biomaterials, nanomaterials
139
Materials and Condensed Matter Option
and nanotechnology, electrochemistry, thin films, mechanics Course Requirements

of materials, electronic materials and physical metallurgy. The Master of Materials Science and Engineering degree is
awarded after successful completion of ten one-term courses
Program Committee within five years. All students are required to take 515.401
Structure and Properties of Materials and 515.402 Thermo-
Robert C. Cammarata, Program Chair
dynamics and Kinetics. Of the remaining eight electives at
Professor, Materials Science and Engineering
least one must be 600-level or higher. Courses offered by the
Department of Materials Science and Engineering are accept-
James B. Spicer able as electives. Students interested in taking the 515.730-
Professor, Materials Science and Engineering 731 Materials Science and Engineering Project must get prior
Graduate Programs
Whiting School of Engineering approval from the departmental coordinator and be assigned
an advisor.
Jennifer Sample
Below is a list of acceptable course electives offered
by other departments. Students wishing to take a course
not on the list to satisfy the degree requirements must get
Timothy Foecke prior approval from the departmental coordinator. The pro-
Staff Materials Scientist gram of ten courses that the student plans to pursue must
National Institute of Standards and Technology be approved by the department coordinator. Students may
also select electives from the courses listed below under the
Admission Requirements Nanotechnology Option.
The Master of Materials Science and Engineering (M.M.S.E.) 525.406 Electronic Materials
program is best suited to students who have received under- 525.407 Introduction to Electronic Packaging
graduate degrees in engineering or science. Applicants are
535.406 Advanced Strength of Materials
expected to have completed a mathematics sequence through
differential equations and courses in general physics and 535.720 Analysis and Design of Composite Structures
chemistry. Applicants must meet the general requirements 545.426 Introduction to Biomacromolecules
for graduate study outlined in this catalog. The program 545.440 Micro and Nanotechnology
committee is willing to consider applicants who do not meet 565.729 Structural Mechanics
the general admission requirements in exceptional cases. 585.409 Mathematical Methods for Applied
Individuals who desire a non-degree status for taking Biomedical Engineering
courses may request consideration for Special Student status.
Regardless of level, courses taken while a Special Student do
not necessarily count toward fulfillment of degree require- 585.609 Cell Mechanics
ments if the student is subsequently accepted as a degree 585.618 Biological Fluid and Solid Mechanics
candidate. This status is normally extended for one year with 615.441 Mathematical Methods for Physics and
reapplication required for continuation. Engineering
615.451 Statistical Mechanics and Thermodynamics
615.757 Solid State Physics
615.760 Physics of Semiconductor Devices
140
Mechanical Admission Requirements

Applicants must meet the general requirements for admis-
Engineering
sion to graduate study outlined in this catalog (see Admis-
sion Requirements). Each applicant should hold a bachelor’s
degree in mechanical engineering or a related field. Prospec-
Mechanical engineering is perhaps the broadest of the engi-
tive students who do not meet these criteria should direct
neering disciplines, for it lies at the core of engineering design
admission inquiries to the program committee. All admis-
and engineering practice. Engineering is changing rapidly
sions decisions are made on an individual basis by the pro-
because of the coupling of globalization with advances in
gram committee.
information technology, biomedicine, and nanotechnology,
and mechanical engineering is the discipline that is leading Course Requirements
Graduate Programs
this change. From the design of medical prostheses to the The program offers three concentrations: mechanics (either
cooling of advanced computers, and from robot vision to solids or thermo-fluids), manufacturing, and robotics and
computer-integrated manufacturing, the scope of mechanical controls. The following requirements are common to all
engineering is growing at an accelerating pace. The Mechani- concentrations. Additional requirements are listed with the
cal Engineering program at Johns Hopkins seeks to develop course listings for each concentration.
engineering professionals who can both strengthen the core Ten one-term courses, numbered 400-level or above
of the discipline and lead the profession in a time of rapid and specifically approved by the advisor, must be completed
change. within a maximum of five years. One of these courses must
The Master of Mechanical Engineering program is be an advanced mathematics course, such as 535.441 Math-
designed for practicing engineers who wish to prepare for ematical Methods for Engineers. In addition, at least one
and enhance their effectiveness in a complex and rapidly computationally oriented course is strongly recommended
evolving technological and organizational environment. The (but not required).
program is designed not only to broaden and strengthen Each concentration has two required courses, and a total
students’ understanding of the traditional fundamentals but of five courses must be chosen from within one concentration.
also to introduce them to contemporary applications and Adding the required mathematics course accounts for six of
technologies. the 10 required courses. The remaining four courses can be
Courses are offered in three basic concentrations: selected from the graduate offerings of any of the full- or part-
mechanics (either solid mechanics or thermo-fluid mechan- time engineering programs of the Whiting School of Engineer-
ics), manufacturing, and robotics and controls. The program ing (including Technical Management). In particular, students
has sufficient flexibility to allow students to develop some concentrating in one area in mechanical engineering can take
multidisciplinary strength outside of a concentration. In any courses offered under any of the other concentrations.
case, students are expected to coordinate their selection of All required courses within a given concentration will
courses under the guidance of a faculty advisor. typically be available at least once a year; other courses are
The degree is awarded on the basis of course work only. generally offered no more than once every two years. All
No thesis is required. Course offerings are typically structured course selections, or course changes, must be approved by the
in two-year cycles. student’s advisor. A thesis is not required, nor is knowledge
of a foreign language.
Program Committee
Required Advanced Mathematics Course
Andrea Prosperetti This advanced mathematics course must be taken in the first
Charles A. Miller Jr. semester of the student’s program, unless the advisor explic-
Distinguished Professor of Mechanical Engineering itly allows the student to do otherwise.
535.441 Mathematical Methods for Engineers
Mehran Armand
Principal Professional Staff Suggested Computationally Oriented Courses
Applied Physics Laboratory Computationally oriented courses are available with vary-
ing expectations in terms of mathematical background and
M.A. Tuve programming skill. These include:
Associate Research Professor of Mechanical Engineering 535.409 Topics in Data Analysis
Johns Hopkins University 535.410 Computational Methods of Analysis
Faculty of Orthopedic Surgery
535.431 Introduction to Finite Element Methods
Johns Hopkins Medicine
535.432 Applied Finite Elements
Louis L. Whitcomb 565.730 Finite Element Methods (Offered by
Professor of Mechanical Engineering Civil Engineering; cannot be counted
Whiting School of Engineering with 535.431)
141
Advanced Certificate for Post-Master’s Study 535.625 Advanced CAD Modeling, Analysis, and
This certificate is awarded to students who complete six grad- Manufacturing
uate-level courses beyond the Master’s degree in Mechanical 535.637 Multiscale Modeling and Simulation of
Engineering. The program is intended to add depth and Mechanical Systems
breadth to the concentration of the Master’s degree or a 535.720 Analysis and Design of Composite
related one. Structures
All applications are reviewed by the program commit- 535.731 Engineering Materials: Properties and
tee. After admission to the program, each student is assigned Selection
an advisor with whom he or she jointly designs a program
tailored to individual educational goals. 565.730 Finite Element Methods
*Cannot be counted together with 535.431.
Graduate Programs
All six courses must be completed with a grade of B

or above. Students must fulfill all the Advanced Certificate 585.609 Cell Mechanics
course requirements within three years of enrollment in the 585.618 Biological Fluid and Solid Mechanics
program. 585.620 Orthopedic Biomechanics
Course Descriptions Thermo-Fluid Mechanics Track

The courses listed with the prefix 535 are offered one night 535.414 Fundamentals of Acoustics
per week, except in the summer semester when, at the dis- 535.421 Intermediate Fluid Dynamics
cretion of the instructor, courses can meet twice a week for *Required course for thermo-fluid mechanics track.
a smaller number of weeks. Courses with the prefix 530 are 535.424 Energy Engineering
usually offered during the day as part of the full-time gradu-
535.433 Intermediate Heat Transfer
ate program in mechanical engineering.
*Required course for thermo-fluid mechanics track.
All courses have as minimum prerequisites the follow-
535.434 Applied Heat Transfer
ing: undergraduate engineering courses in calculus, differ-
ential equations, statics, dynamics, thermodynamics, and 535.450 Combustion
strength of materials. In addition, the specific prerequisites 535.452 Thermal Systems Design and Analysis
for each course must be fulfilled. 535.461 Energy and the Environment
Please refer to the Course Schedule published each term 535.636 Applied Computational Fluid Mechanics
for exact dates, times, locations, fees, and instructors.
535.712 Applied Fluid Dynamics
I. Mechanics 585.609 Cell Mechanics
Within the Mechanics concentration, students may either 585.618 Biological Fluid and Solid Mechanics
choose a Solid Mechanics track or a Thermo-Fluid Mechan- Note: 535.424, 535.443, 535.453, and 535.636 are only
ics track. Students taking the Solid Mechanics track must occasionally offered.
take 535.406 Advanced Strength of Materials and 535.423
Intermediate Vibrations. Students taking the Thermo-Flu- II. Manufacturing Concentration
id Mechanics track must take 535.421 Intermediate Fluid The required courses for the Manufacturing concentration
Dynamics and 535.433 Intermediate Heat Transfer. Three are 535.428 Computer-Integrated Design and Manufactur-
additional courses must be chosen from either track (not ing and 535.459 Manufacturing Systems Analysis. Three
necessarily all from the same track). The only restriction is additional courses must be chosen from within the Manufac-
that course prerequisites be fulfilled in all cases. turing concentration. Course prerequisites must be fulfilled
in all cases.
Solid Mechanics Track
535.423 Intermediate Vibrations
535.406 Advanced Strength of Materials
535.426 Kinematics and Dynamics of Robots
*Required course for solid mechanics track.
535.427 Computer-Aided Design
535.412 Intermediate Dynamics
535.428 Computer-Integrated Design and
535.423 Intermediate Vibrations
Manufacturing
*Required course for solid mechanics track.
*Required course for manufacturing concentration.
535.427 Computer-Aided Design 535.433 Intermediate Heat Transfer
535.431 Introduction to Finite Element Methods 535.442 Control Systems for Mechanical
*Cannot be counted together with 560.730. Engineering Applications
535.432 Applied Finite Elements 535.458 Design for Manufacturability
535.454 Theory and Applications of Structural 535.459 Manufacturing Systems Analysis
Analysis *Required course for manufacturing concentration.
142
535.472 Advanced Manufacturing Systems 535.422 Robot Motion Planning

535.625 Advanced CAD Modeling, Analysis, and 535.423 Intermediate Vibrations
Manufacturing 535.426 Kinematics and Dynamics of Robots
595.460 Introduction to Project Management *Required course for robotics and controls
595.760 Introduction to Quality Management concentration.
535.427 Computer-Aided Design
III. Robotics and Controls Concentration
The required courses for the Robotics and Control concen-
Manufacturing
tration are 535.426 Kinematics and Dynamics of Robots
and 535.442 Control Systems for Mechanical Engineering 535.442 Control Systems for Mechanical
Graduate Programs
Applications. Three additional courses must be chosen from Engineering Applications
within the Robotics and Controls concentration. Course *Required course for robotics and controls
prerequisites must be fulfilled in all cases. concentration.
525.409 Continuous Control Systems 535.445 Digital Control and Systems Applications
525.763 Applied Nonlinear Systems 535.459 Manufacturing Systems Analysis
530.651 Haptic Systems for Teleoperation and 535.625 Advanced CAD Modeling, Analysis, and
Virtual Reality Manufacturing
535.412 Intermediate Dynamics 535.726 Robot Control
Course Descriptions
535.406 Advanced Strength of Materials the program that use MATLAB. Course topics include an
This course reviews stress and strain in three dimensions, introduction to script programming, solution of one- and
elastic and inelastic material behavior, and energy methods. two-dimensional definite integrals, solution of coupled sets
It also covers use of the strength of materials approach to of ordinary differential equations, typical data analysis (e.g.,
solving advanced problems of torsion, bending of beams and Fourier transforms, curve fitting, and signal processing), and
plates, buckling of columns, stress concentrations, and frac- matrix manipulation (e.g., solution of linear systems and
ture mechanics. The use of finite element analysis in solving eigenvalue extraction).
problems in mechanics will be introduced as well. Staff
Prerequisites: Required course for solid mechanics track.
535.412 Intermediate Dynamics
Burkhardt This course covers kinematics and dynamics of systems of
535.409 Topics in Data Analysis particles and rigid bodies undergoing planar and general
This course will provide a survey of standard techniques for 3-D motion. Applications of the conservation equations are
the extraction of information from data generated experi- reviewed in the context of mass-flow and impact. Vectoral and
mentally and computationally. The approach will empha- analytical mechanics approaches are introduced and used to
size the theoretical foundation for each topic followed by analyze the dynamics of systems of interconnected rigid bod-
applications of each technique to sample experimental data. ies. MATLAB is used as a computational and plotting tool
The student will be provided with implementations to gain throughout the course. The course provides a balance between
experience with each tool to allow the student to then quick- the underlying theory and real-world problem solving.
ly adapt to other implementations found in common data Prerequisite: An undergraduate dynamics course.
analysis packages. Topics include uncertainty analysis, data Staff
fitting, feed-forward neural networks, probability density
535.414 Fundamentals of Acoustics
functions, correlation functions, Fourier analysis and FFT
procedures, spectral analysis, digital filtering, and Hilbert This course provides an introduction to the physical prin-
transforms. Projects will require some programming experi- ciples of acoustics and their application. Fundamental topics
ence or familiarity with tools such as MATLAB. include the generation, transmission, and reception of acous-
tic waves. Applications covered are selected from underwater
Hess
acoustics, architectural acoustics, remote sensing, and non-
535.410 Computational Methods of Analysis destructive testing.
This course serves as an introduction to using MATLAB Prerequisites: Some familiarity with linear algebra, complex
for typical engineering analyses and may serve as a valuable variables, and differential equations.
precursor to the more computationally intensive courses in Burkhardt
143
535.421 Intermediate Fluid Dynamics 535.426 Kinematics and Dynamics of Robots

This course prepares the student to solve practical engineer- This course introduces the basic concepts and tools used to
ing flow problems and concentrates on the kinematics and analyze the kinematics and dynamics of robot manipula-
dynamics of viscous fluid flows. Topics include the con- tors. Topics include kinematic representations and transfor-
trol volume and differential formulations of the conserva- mations, positional and differential kinematics, singularity
tion laws, including the Navier-Stokes equations. Students and workspace analysis, inverse and forward dynamics tech-
examine vorticity and circulation, dynamic similarity, and niques, and trajectory planning and control.
laminar and turbulent flows. The student is exposed to ana- Armand
lytical techniques and experimental methods, and the course
includes an introduction to computational methods in fluid 535.427 Computer-Aided Design
Graduate Programs
dynamics. It also includes a programming project to develop This course provides a wide ranging exploration of com-
a numerical solution to a practical fluid flow problem. puter-aided design (CAD) using Creo Parametric (a PTC
Prerequisite: An undergraduate fluid mechanics course. CAD software, previously called Pro/ENGINEER). Topics
include sketching, solid modeling, assembly modeling, detail
Hess
drafting, geometric dimensioning and tolerancing, advanced
535.422 Robot Motion Planning modeling, sheetmetal modeling, mechanism dynamics, and
structural/thermal finite element analysis (FEA).
This course investigates the motion planning problem in
robotics. Topics include motion of rigid objects by the con- Boyle
figurations space and retraction approaches, shortest path
motion, motion of linked robot arms, compliant motion,
Manufacturing
coordinated motion of several objects, robust motion with
error detection and recovery, and motion in an unknown This course emphasizes the computer automation of design
environment. (Offered only occasionally.) and manufacturing systems. A survey of the automation tech-
niques used in modern design and manufacturing facilities
Urban is presented. Discussions are presented related to the system
integration of computer-aided design (CAD), computer-
535.423 Intermediate Vibrations aided engineering (CAE), computer-aided manufacturing
Course topics include transient and forced vibration of one- (CAM), robotics, material resource planning, tool manage-
and N-degree of freedom systems and an introduction to ment, information management, process control, and quality
vibration of continuous systems. Hamilton’s Principle and control. The current capabilities, applications, limitations,
Lagrange’s equations are used throughout the course to derive trends, and economic considerations are stressed.
the equation(s) of motion. MATLAB is introduced and used Ivester
to solve the equations of motion and plot the response of
the system. This course also addresses common topics in 535.431 Introduction to Finite Element Methods
applied vibrations such as the environmental testing, the Topics covered by this course include theory and implemen-
shock response spectrum, random vibration, vibration isola- tation of finite element models for typical linear problems
tion, and the design of tuned-mass damper systems. in continuum mechanics including fluid flow, heat transfer,
Prerequisite: An undergraduate vibrations course. Required and solid mechanics. Emphasis will be placed on develop-
course for solid mechanics track. ing a fundamental understanding of the method and its
Staff application.
Note: Cannot be counted with 560.730.
535.424 Energy Engineering Lear
The course will focus on an analytical system performance
technique known as Availability or Exergy Analysis, which 535.432 Applied Finite Elements
is based on the second law of thermodynamics. The course This course provides an introduction to the study of mechan-
focuses on traditional power and refrigeration systems. How- ics using the finite element method. Topics include the
ever, nontraditional power generation systems will be consid- stiffness method, stationary principles, the Rayleigh-Ritz
ered by way of a special project of each student’s choice. It method, displacement-based elements, isoparametric for-
will include an engineering description of the state of the art mulation, and coordinate transformation. A general purpose
of the selected topic (e.g., wind or solar power, fuel cell, etc.), finite element analysis package will be used for computer
and a second law performance analysis of a prototype system project assignments. Students who successfully complete this
will be presented to the class. In addition to the power system course will be able to utilize general purpose commercial code
topics, the availability analysis will be applied to the combus- to solve linear two- and three-dimensional problems in statics
tion and psychrometric processes. (Offered only occasionally.) and vibrations.
Thomas, Xia Hassan
144
535.433 Intermediate Heat Transfer mal control design, pole-placement design, and state-space
This course covers the following topics: transient heat con- observer design. The class will use a series of applications that
duction, forced and free convection in external and internal build in complexity throughout the semester to emphasize
flows, and radiation processes and properties. and reinforce the material.
Prerequisite: An undergraduate heat transfer course. Prerequisite: 535.442 Control Systems for Mechanical Engi-
Thomas, Xia neering Applications.
Urban
535.434 Applied Heat Transfer
This course focuses on the inevitable trade-offs associated 535.450 Combustion
with any thermodynamic or heat transfer system, which This is a multidisciplinary course involving applications of
Graduate Programs
result in a clear distinction between workable and optimal thermodynamics, fluid mechanics, heat transfer, and chemis-
systems. The point is illustrated by means of a number of try. Course contents include a review of chemical thermody-
concrete problems arising in power and refrigeration systems, namics, chemical kinetics, transport theory, and conservation
electronics cooling, distillations columns, heat exchange, and equations; laminar flow in premixed and non-premixed gases;
co-generation systems. combustion waves; ignition; combustion aerodynamics; mul-
Prerequisite: An undergraduate heat transfer course. tiphase combustion; and turbulent combustion. Selected
applications are discussed including gas turbines, spark igni-
Healy
tion and diesel engines, jet engines, industrial furnaces, pol-
535.441 Mathematical Methods for Engineers lutant formation, and control in combustion.
This course covers a broad spectrum of mathematical tech- Prerequisites: Undergraduate-level exposure to thermody-
niques needed to solve advanced problems in engineering. namics, fluid dynamics, differential equations, and basic
Topics include ordinary differential equations, complex vari- chemistry.
ables, integral transforms, vectors and matrices, special func- Kweon
tions, and partial differential equations. Application of these
topics to the solutions of physics and engineering problems 535.452 Thermal Systems Design and Analysis
is stressed. Thermodynamics and heat transfer principles are applied to
Prerequisites: Vector analysis and ordinary differential equa- power and refrigeration systems with emphasis on economic
tions. This course may be substituted for 615.441 Math- and performance trade-offs. Where it has practical value,
ematical Methods for Physics and Engineering in the Applied the use of second-law analysis (i.e., an entropy inventory) is
Physics program. introduced. The mathematical modeling of thermal elements
and complex systems is developed to minimize primary ener-
Nakos
gy consumption while meeting variable load patterns. This
535.442 Control Systems for Mechanical leads to the use of an advanced computer-based equation
Engineering Applications solver software package for simulation and numerical solu-
tion. The necessary software is provided to the students.
This course presents an overview of the current control ele-
ments and processes for mechanical and electromechanical Prerequisites: Undergraduate courses in thermodynamics and
systems used in standard engineering practice. Various sys- heat transfer. No computer programming is required.
tems, including thermal and fluid models, are described with Healy
particular emphasis placed on computer control applications.
Analysis is performed on commonly used servomechanisms, 535.454 Theory and Applications of Structural
and design and stability criteria are investigated. Analysis
Urban This is a course in classical plate and shell structures with an
emphasis on both analysis and application. Both differential
535.445 Digital Control and Systems Applications and energy method approaches are presented. Topics include
This class will provide a comprehensive treatment of the an introduction to thin plate theory, its application to cir-
analysis and design of discrete-time control systems. The cular and rectangular plates, buckling, and thermal effects.
course will build upon the student’s knowledge of classi- Classical thin shell theory is also presented. Applications to
cal control theory and extend that knowledge to the dis- common plate and shell structures are discussed throughout.
crete-time domain. This course is highly relevant to aspiring Burkhardt
control systems and robotics engineers since most control
system designs are implemented in micro-processors (hence 535.458 Design for Manufacturability
the discrete-time domain) vice analog circuitry. Additionally, The key principles for designing a quality, cost-efficient
the course will go into advanced control system designs in the product are related to competitiveness in manufacturing
state-space domain and will include discussions of modern environments in this course. Topics include design for manu-
control design techniques including linear-quadratic opti- facturing, design for assembly, process selection, inspection
145
planning, concurrent engineering, product re-engineering, trate how industry is adopting the latest technology to meet
quality management, and agile manufacturing. The focus customer requirements for quality, low cost, and flexibility.
is on engineering designs and system approaches that affect Ivester
cost, quality, cycle time, and maintainability.
Ivester 535.620 Orthopedic Biomechanics
This course is an introduction to the field of orthopedic
535.459 Manufacturing Systems Analysis biomechanics for the engineer. It will cover the structure and
This course is a review of the fundamentals of modern manu- function of the musculoskeletal system, including detailed
facturing processes, computer-aided design/manufacturing discussions on the material properties of bone, ligament,
tools, flexible manufacturing systems, and robots. The course tendon, cartilage, and muscle. Other topics of discussion will
Graduate Programs
addresses relationships between process machinery, process include viscoelasticity, bone remodeling, and injury mecha-
conditions, and material properties. Examples of high-tech nisms. Journal articles from the biomechanics literature will
industries illustrate how mechanical and electronic compo- be used to explore current areas of active research. (Offered
nents are manufactured from metals, polymers, ceramics, only occasionally.)
composites, and silicon. Prerequisites: Statics required and dynamics recommended.
Ivester Staff
535.460 Precision Mechanical Design 535.625 Advanced CAD Modeling, Analysis, and
This course will provide the student with a fundamental Manufacturing
understanding of the principles and techniques used to design This course presents advanced mechanical design techniques
precision machines, instruments, and mechanisms. Lectures using the Pro/ENGINEER CAD/CAM software. It explains
will include discussions on the implementation and design of advanced methods and techniques about assembly manage-
mechanisms, bearings, actuators, sensors, structures, and pre- ment and mechanism design, kinematic and dynamic analy-
cision mounts used in precision design. Upon completion of ses, structural analyses (FEA), and CNC manufacturing. The
this course, students will have a clear understanding of posi- material is presented based on extensive hands-on examples.
tional repeatability and accuracy, deterministic design, exact The CAM sections includes practical examples with 3-5 axes
constraint design, error modeling, and sources of machine Vertical Machining Centers (HAAS FV-1&2) and a Turning
and instrumentation errors. CNC center (HAAS SL-20).
Staff Prerequisite: Knowledge and experience with basic ProE parts
and assembly management.
535.461 Energy and the Environment
The course focuses on advanced topics related to energy and Stoianovici
thermodynamics. The objective of this course is to provide a
535.626 Advanced Machine Design
thorough understanding of the environmental impacts related
This course provides a broad treatment of stress, strain, and
to energy conversion systems. The use of the second law of
strength with reference to engineering design and analysis.
thermodynamics is introduced to quantify the performance
Major emphasis is placed on the analytical and experimen-
of energy conversion systems. Topics such as global warm-
tal methods of determination of stresses in relationship to
ing, alternative energy sources (solar, wind power, geothermal,
the strength properties of machine elements under various
tides, etc.), new technologies (fuel cells and hydrogen econo-
loading conditions. Also considered are deflection, post-
my), and resources and sustainable development are addressed.
yield behavior, residual stresses, thermal stresses, creep, and
A section of the course is devoted to current trends in nuclear
extreme temperature effects as applied to the design of fasten-
energy generation and associated environmental issues.
ers, shafts, power trains, and rotational machinery.
Prerequisite: Undergraduate-level exposure to thermodynamics.
Dehghani
Herman
535.636 Applied Computational Fluid Mechanics
535.472 Advanced Manufacturing Systems
This course examines the effect that new technology, engi- This course explores engineering applications of computa-
neering, and business strategies have on transforming U.S. tional fluid dynamics with background information on the
industry into a world-class, competitive force. An empha- most common numerical methods: two-dimensional inviscid
sis is placed on the state-of-the-art of factory automation and viscous flows, boundary layer flows, and an introduction
and computer-integrated manufacturing. Topics include to three-dimensional flows. Applications are illustrated utiliz-
advanced manufacturing processes, rapid prototyping, intel- ing commercially available codes. (Offered only occasionally.)
ligent manufacturing controls, and information technology Prerequisites: 535.421 Intermediate Fluid Dynamics and
in manufacturing. Technical principles related to advanced 535.441 Mathematical Methods for Engineers. Some pro-
manufacturing are presented. Examples of actual production gramming experience is also assumed.
systems (including video presentations and plant visits) illus- Staff
146
535.637 Multiscale Modeling and Simulation of 535.726 Robot Control

Mechanical Systems This course focuses on the theory and methods used for the
Successfully designing complex engineering systems requires control of robotic manipulators. Topics include review of
understanding mechanical processes that bridge multiple basic systems theory, robot position control, model-based
length and time scales. This course will introduce students to trajectory tracking, and force control. Stability properties for
the field of multiscale modeling, and provide a foundation each control strategy will be analyzed. Practical implemen-
for understanding systems/devices at a molecular, microscop- tation issues will also be addressed. Students will simulate
ic, and macroscopic level. Through a combination of lectures, different control methods using MATLAB.
case-studies, and hands-on applications, students will learn Prerequisites: 535.426 Kinematics and Dynamics of Robots,
(i) the principles that govern engineering systems at various Ordinary Differential Equations, Linear Algebra.
Graduate Programs
length and time scales, and (ii) how to use/develop multiscale Armand
mechanical modeling and simulation tools.
Thomas 535.731 Engineering Materials: Properties and
Selection
535.712 Applied Fluid Dynamics Become familiar with different classes of engineering materi-
This course will provide a survey of topics in applied fluid als and their trade-offs associated with design criteria such as
dynamics for the practicing engineer. The first topic will strength, toughness, corrosion-resistance, and fabricability, as
concentrate on pipe and duct flow, looking at friction factors, well as some common test methods for evaluating material
abrupt changes in area, and pipe systems. This is followed properties. This course will concentrate on metal alloys, but
by unsteady flows focusing on pressure transients, such as will also consider polymers, and ceramics. Topics specific
the water hammer. A section on lubrication theory cover- to metals will include effects of work hardening and heat
ing wedge and journal bearings is presented. Open channel treatment, corrosion, and elevated temperature properties.
flows are discussed with emphasis on optimum cross-section- Topics specific to polymers will include viscoelasticity, stress
al shape and specific energy. Turbomachinery such as axial relaxation and creep, and phase transitions. Topics specific
and centrifugal pumps, including specific speed and suction to ceramics will include flaw-dominated strength, fracture
limitations, is described. Fluid dynamic drag and lift from energy, and statistical determination of strength. The course
streamlined surfaces are presented, including topics such also includes an introduction to the Ashby method of mate-
as vortex shedding, terminal velocity, and cavitation. The rial selection and optimization.
approach will emphasize the practical foundation needed to Lennon
solve real-world problems.
Prerequisite: 535.421 Intermediate Fluid Dynamics. Projects
will require some programming experience or familiarity
with tools such as MATLAB.
Hess
535.720 Analysis and Design of Composite

Structures
Topics in this course include anisotropic elasticity, laminate
analysis, strength of laminates, failure theories, bending,
buckling, and vibration of composite plates. The second part
of the course is devoted to the applications of the structural
analysis of composite structures by means of finite-elements
computer codes.
Staff
147
Nanotechnology Option
Nanotechnology 515.417 Nanomaterials. The program of 10 courses that the

student plans to pursue must be approved by the departmen-
Option
tal coordinator.
A list of acceptable electives for the nanomaterials
and biotechnology concentrations is given below. Students
Nanotechnology involves science and engineering on the nano- who wish to take courses not listed below need to get prior
meter scale (generally less than or of order 100nm). It concerns approval from the departmental coordinator.
the design, synthesis, and processing of nanoscale structures
for engineering applications. In some cases this can involve I. Nanomaterials Concentration
the assembly of materials one molecule or even one atom at a
time. At these small length scales, materials often display novel Materials Science & Engineering Courses
Graduate Programs
behavior that can be exploited technologically. For example, 510.611-612 Solid State Physics
in the area of nanoelectronics, there has been an intense effort 510.622 Micro-and Nano-Structured Materials
toward continued miniaturization of semiconductor devices in and Devices
order to increase the density of transistors in integrated circuits
or to exploit quantum mechanical effects that occur only when 515.730-731 Materials Science and Engineering
the length scale is reduced to the nanoscale range. Nanomateri- Project
als also display enhanced mechanical, optical, magnetic, and Applied Biomedical Engineering Courses
chemical properties that offer a wide variety of technological
580.637 Cellular and Tissue Engineering
uses. Recently nanotechnology has become extremely impor-
tant in the area of biotechnology, allowing for the study of the 585.405-406 Physiology for Applied Biomedical
science and engineering of biological materials for a variety of Engineering
medical applications. 585.409 Mathematical Methods for Applied
Admission Requirements 585.608 Biomaterials
Applicants must meet the requirements for admission into 585.609 Cell Mechanics
the Master of Materials Science and Engineering (M.M.S.E.) 585.610 Biochemical Sensors
program. The program is best suited for students who have
585.614 Applications of Physics and Technology
received undergraduate degrees in engineering or science.
to Biomedicine
Applicants are expected to have completed a mathematics
sequence through differential equations and courses in general 585.618 Biological Fluid and Solid Mechanics
physics and chemistry. Applicants must also meet the general 585.626 Biomimetics in Biomedical Engineering
requirements for study outlined in this catalog. The program
Applied Physics Courses
committee is willing to consider applicants who do not meet
the general admission requirements in exceptional cases. 615.441 Mathematical Methods for Physics and
Engineering
Nanotechnology Course Requirements 615.746 Nanoelectronics: Physics and Devices
Students enrolled in the Master of Science in Materials Sci- 615.747 Sensors and Sensor Systems
ence and Engineering program can elect to pursue the Nan- 615.757 Solid State Physics
otechnology Option. Two concentrations are offered: the
nanomaterials concentration and the biotechnology concen- Chemical and Biomolecular Engineering Courses
tration. For either concentration, the student must success- 545.439 Polymer Nanocomposites
fully complete the core courses and then at least three courses 545.612 Interfacial Phenomena in Nanotechnology
selected from the corresponding concentration course list.
The student, in consultation with the departmental coor- Electrical and Computer Engineering Courses
dinator, will select the other courses (for a total of 10) from 525.406 Electronic Materials
the part-time or full-time graduate courses offered by the 525.421 Introduction to Electronics and the
Whiting School of Engineering. The set of 10 courses must Solid State I
represent a coherent educational program and be approved
by the departmental coordinator. At least one of the non-core Geography and Environmental Engineering Courses
courses must be 600-level or higher. 570.429 Surface Effects of Technological Processes
and Materials
Required Core Courses
All students are required to take 515.401 Structure and Prop- Mechanical Engineering Courses
erties of Materials, 515.402 Thermodynamics and Kinetics 530.652 Bridging Length Scales in Materials
of Materials, 515.416 Introduction to Nanotechnology and Behavior
148
Nanotechnology Option
II. Biotechnology Concentration 585.409 Mathematical Methods for Applied

Materials Science and Engineering Courses 585.608 Biomaterials
510.606 Chemical and Biological Properties of
585.609 Cell Mechanics
Materials
510.617 Advanced Topics in Biomaterials
585.614 Applications of Physics and Technology to
515.730-731 Materials Science and Engineering
Biomedicine
Project
585.618 Biological Fluid and Solid Mechanics
Applied Biomedical Engineering Courses 585.626 Biomimetics in Biomedical Engineering
Graduate Programs
580.637 Cellular and Tissue Engineering
585.405-406 Physiology for Applied Biomedical Chemical and Biomolecular Engineering Courses
Engineering 545.612 Interfacial Phenomena in Nanotechnology
149
Photonics Option
Photonics Option Three additional courses must be selected from the lists
below. The three additional courses needed to complete the
Photonics, a technical area crossing the boundaries of phys- degree may be any courses approved by the advisor, selected
ics and electrical engineering, continues to be of consider- so as to fulfill the general requirements for the M.S. degree.
able importance in our technical activities. Although there
Applied Physics Courses:
is no separate degree curriculum in photonics, students can
elect to pursue a concentration in photonics from either the 615.751 Modern Optics
applied physics or electrical and computer engineering cur- 615.758 Modern Topics in Applied Optics
ricula. To do this, students can complete a combination of 615.778 Computer Optical Design
courses selected from both the applied physics and electri- 615.780 Optical Detectors and Applications
Graduate Programs
cal and computer engineering disciplines. The wide variety 615.781 Quantum Information Processing
of courses from both areas allows students, working with
615.782 Optics and MATLAB
advisors, to structure a program meeting their professional
development needs. Note: 615.800 Applied Physics Project and 615.802 Direct-
ed Studies can also be used to allow the student to pursue
Admission Requirements specialized interests in photonics.
to graduate programs outlined in this catalog. In addition, Electrical and Computer Engineering Courses:
applicants must meet the specific program requirements for 525.413 Fourier Techniques in Optics
either applied physics or electrical and computer engineering. 525.425 Laser Fundamentals
The special option in photonics will be noted on the student’s
525.436 Optics and Photonics Laboratory
transcript.
Course Requirements 525.753 Laser Systems and Applications
A total of 10 one-term courses must be completed. 525.756 Optical Propagation, Sensing, and
Backgrounds
Applied Physics Required Core for Photonics Option: 525.772 Fiber-Optic Communication Systems
Applied physics students specializing in photonics must com-
525.792 Electro-Optical Systems
plete the following three applied physics courses plus one
additional course from the required electrical and computer 525.796 Introduction to High-Speed Electronics
engineering list. and Optoelectronics
615.441 Mathematical Methods for Physics and 525.797 Advanced Optics and Photonics Laboratory
Engineering Note: Special Project courses 525.801 and 525.802 can also
615.454 Quantum Mechanics be used to allow students to pursue specialized interests in
615.471 Principles of Optics optics.
The six additional courses must include four or more photon- Applied Biomedical Engineering Course
ics courses selected from both the applied physics and the
585.634 Biophotonics
electrical and computer engineering curricula.
Electrical and Computer Engineering Required Core for

Photonics Option
Electrical and computer engineering students specializing in Course Descriptions
photonics must complete the following three electrical and
computer engineering courses plus one additional course Courses numbered 600-level and above are open only to
from the required applied physics list. students who have been admitted for graduate study. Some
courses may not be offered every year. Please refer to the
Course Schedule published each term for exact dates, times,
525.425 Laser Fundamentals locations, fees, and instructors.
150
Systems Engineering
Systems Engineering Benjamin F. Hobbs

Theodore M. and Kay W. Schad Professor of
The systems engineering process coordinates and oversees Environmental Management
the translation of an operational need into a system designed Whiting School of Engineering
to meet that need. It integrates the inputs of all the required Jerry A. Krill
technical disciplines into a coordinated effort that meets Principal Professional Staff
established performance, cost, and schedule goals. Systems Applied Physics Laboratory
engineers provide the leadership and coordination of the
planning, development, and engineering of technical sys- Edward A. Smyth
tems, including hardware and software components. Principal Professional Staff
Graduate Programs
The Master of Science in Systems Engineering program Applied Physics Laboratory
provides professionals with in-depth knowledge and techni- Larry D. Strawser
cal skills in the field of systems engineering and systems of Principal Professional Staff
systems, and prepares students for careers within industry Applied Physics Laboratory
and government. The Systems Engineering program address-
es the needs of engineers and scientists engaged in all aspects Charles R. Westgate
of analysis, design, integration, production, and operation of Professor Emeritus
modern systems. Instructors are practicing systems engineers, Electrical and Computer Engineering
who employ lectures and readings on theory and practice, Whiting School of Engineering
with realistic problem scenarios in which students, individu-
ally and collaboratively, apply principles, tools, and skills. The
program educational objectives are: to attain programmatic
to a graduate program outlined in this catalog (see Admis-
or technical leadership roles in an organization identifying,
sion Requirements). In addition, the applicant should have a
formulating, designing and/or testing practical solutions
degree in a technical field from a regionally accredited college
to engineering problems and guide the engineering devel-
or university, an ABET (Accreditation Board of Engineering
opment of modern complex systems; and to employ sys-
and Technical) accredited program, and have a minimum
tems engineering methods and tools in the development of
of one year of appropriate full-time work experience in that
advanced complex systems, and when appropriate, conduct
field. A résumé must be submitted with the application form.
research in applied systems engineering to advance the field.
In considering applications to the Systems Engineering pro-
Students are encouraged to pursue the entire master’s
gram, both academic record and experience will be consid-
degree, but in special approved cases may apply for the Grad-
ered and, at the discretion of the Admissions Committee,
uate Certificate in Systems Engineering. The requirements
years and quality of experience may compensate for a GPA
for admission are the same as for the master’s degree and
that is short of the required 3.0. Admission decisions will be
the student must complete six courses, as approved by the
made by concentration.
program chair/vice chair, with a grade of B or higher (see
Admission Requirements). Course Requirements
Prior or concurrent completion of 645.467 Management
Program Committee of Systems Projects and 645.462 Introduction to Systems
Ronald R. Luman, Chair Engineering (taken in either order) is generally a prerequisite
Principal Professional Staff to more advanced courses in the systems engineering curricu-
Applied Physics Laboratory lum. Specific prerequisites for each course are shown under
the individual course descriptions. An approved program
Samuel J. Seymour, Vice Chair plan is required for preferential placement in registering.
Principal Professional Staff Neither a thesis nor knowledge of a foreign language is
Applied Physics Laboratory required in this program. Academic standards governing grad-
Steven M. Biemer uate study, as specified in this catalog, must be maintained.
Systems Engineering—Online
The systems engineering master’s degree can be completed
William B. Crownover online with course content identical to that in the class-
Principal Professional Staff rooms but available in a paced, asynchronous mode over
Applied Physics Laboratory the Internet. Recorded lectures with associated multimedia
content are augmented with online discussions and weekly
Conrad J. Grant
synchronous office hours. This increases the flexibility of
course offerings for students wishing to pursue studies in
either the on-site or online format, or a combination of both.
151
Systems Engineering
Prospective and current students should consult the Systems engineering students may not take the following as
EP website the most current online course offerings, course elective courses:
schedules, and procedures for online programs. The online 595.460 Introduction to Project Management
courses are available only in the Systems Engineering, Infor- 595.464 Project Planning and Control, or
mation Assurance, Project Management, Modeling and Sim-
595.763 Software Engineering Management.
ulation and Human Systems Engineering concentrations.
There are two additional systems engineering courses that
Systems Engineering Concentration Areas may serve as electives:
Students pursuing the M.S. in Systems Engineering may 645.469 Systems Engineering of Deployed Systems
elect to concentrate their studies in one of several concentra- 645.756 Metrics, Modeling, and Simulation for
Graduate Programs
tion areas listed below. Systems Engineering
Systems Engineering Concentration Project Management Concentration

Systems Engineering concentration students must satisfacto- Admission and course requirements are the same as for the
rily complete 10 one-semester courses as follows: Systems Engineering concentration program listed above
with the exception that students wishing to elect a concentra-
Six core courses: tion in project management should select the following two
645.462 Introduction to Systems Engineering courses for their electives:
645.467 Management of Systems Projects 595.461 Technical Group Management and
595.465 Communications in Technical Organizations
or
645.767 System Conceptual Design
595.466 Financial and Contract Management
645.768 System Design and Integration
645.769 System Test and Evaluation Biomedical Systems Engineering Concentration
Systems engineering is playing an increasing role in the devel-
One of the following four advanced courses: opment and implementation of modern complex biomedical
645.742 Management of Complex Systems systems. If today’s practicing engineers and scientists are to
develop new and much needed biomedical technologies and
645.753 Enterprise Systems Engineering systems, they need to plan, coordinate, and oversee interdisci-
645.761 Systems Architecting plinary team efforts that translate operational needs into tech-
645.771 System of Systems Engineering nology solutions, and whose tools and skills determine whether
a system will meet cost, schedule, and performance goals. At
Note: These four courses also form the core of the Advanced the same time, they should understand the fundamental nature
Certificate for Post-Master’s Study in Systems Engineering. and interaction of biological and physiological systems.
This concentration trains students to integrate the
Master’s Project/Thesis
diverse areas of biomedical engineering with the skills and
Students must complete either the one-semester Systems Engi- tools of a systems engineer. Students should expect they will
neering Master’s Project or the two-semester Systems Engineer- have a deeper understanding of the field and a broader per-
ing Master’s Thesis. The thesis option is strongly recommended spective of the system challenges of biomedical systems that
only for students planning to pursue doctoral studies. they will be able to immediately implement in their places
645.800 Systems Engineering Master’s Project of employment.
645.801-802 Systems Engineering Master’s Thesis
Admissions Requirements
Electives Applicants must meet the general requirements for admis-
sion to the Engineering for Professionals program. In addi-
Systems Engineering concentration students must complete
tion, the applicant should have a degree in a technical field
one or two relevant electives, depending on whether the
from a regionally accredited college or university, an ABET
student has selected the master’s project or the master’s the-
(Accreditation Board of Engineering and Technical) accredited
sis option, respectively. Electives may be selected from the
program, and have a minimum of one year of appropriate full-
Technical Management, Applied Biomedical Engineering,
time work experience in that field. The applicant must have
Applied Physics, Computer Science, Electrical Engineering,
compiled an average of B or above for all courses in mathemat-
Environmental Engineering and Science, and Information
ics, physics, engineering, and other engineering or physical
Systems Engineering programs. Individual courses (595
sciences. The applicant’s preparation must have included math-
series) are described in the current catalog under the techni-
ematics through ordinary differential equations, calculus-based
cal management program section.
physics, and organic and inorganic chemistry. A résumé must
be submitted with the application form.
152
Systems Engineering
Course Requirements Human Systems Engineering Concentration

A total of 10 one-semester courses must be completed within Human systems engineering (HSE) is a comprehensive pro-
five years. The curriculum consists of six required courses gram for considering the requirements and constraints of
in systems engineering, three required courses in biomedi- humans as part of an overall system solution. Systems engi-
cal engineering, and an elective biomedical course. Prior or neering addresses the three major components of a system:
concurrent completion of 645.467 Management of Systems hardware, software, and humans. A total systems approach
Projects and 645.462 Introduction to Systems Engineering that considers all three components and the complex interac-
(taken in either order) is generally a prerequisite to more tions among them has been recognized as essential by gov-
advanced courses in the curriculum. ernment and industry organizations responsible for system
development and operation. Failure to consider the human
Systems Engineering Core Courses
Graduate Programs
component in systems engineering can lead to less effective
The core systems engineering curriculum of six required system performance and even to catastrophic failure.
courses includes: Human systems engineering involves factors from many
645.462 Introduction to Systems Engineering domains, including human capabilities and limitations;
645.467 Management of Systems Projects human performance measurement and analysis; integrating
645.767 System Conceptual Design people and technology; system use in complex operational
645.768 System Design and Integration situations; and the influence of environmental, organiza-
645.769 System Test and Evaluation tional, and social factors on system requirements and design.
645.805 Biomedical Systems Engineering Master’s These factors play a role throughout the system life cycle; they
Project are involved in determining requirements, allocating func-
tions, system and component design, testing and evaluation,
Biomedical Core Courses training, and system sustainment.
Required biomedical courses are offered at the Applied Phys- The Johns Hopkins University Engineering for Profes-
ics Laboratory or the Dorsey Center: sionals (EP) Human Systems Engineering concentration
585.405-406 Physiology for Applied Biomedical trains students in the human systems integration domains
Engineering and their interdependencies, and provides additional mate-
585.409 Mathematical Methods for Applied rial related to general human systems engineering. Students
Biomedical Engineering will gain a deeper understanding of how the appropriate
application of human systems engineering adds value to sys-
Elective Course tems, and they will graduate with knowledge of the human
Students are required to take an elective course selected from component and keen judgment to know how to incorporate
the following with advisor approval. Please note that courses human systems engineering.
prefixed by 580 are offered at the Homewood campus in
Baltimore. Admission Requirements
Four biomedical courses come from the following set of Applicants must meet the general requirements for admis-
courses offered in the applied biomedical engineering cur- sion to the Engineering for Professionals program. In addi-
riculum, or with an advisor’s approval, from those offered in tion, the applicant should have a degree in a technical
the JHU Biomedical Engineering Department (listed below; field from a regionally accredited college or university, an
please note that these courses are taught either at the medical ABET (Accreditation Board of Engineering and Technical)
school or the Homewood campus during the day). Students accredited program, and have a minimum of one year of
are required to file a program plan listing the courses they appropriate full-time work experience in the HSE field. The
plan to take, which must be approved by the student’s advisor. applicant must have an average of B or above for all courses
580.630 Theoretical Neuroscience in mathematics, physics, engineering and other engineering
580.644 Neural Control of Movement and or physical sciences. A résumé must be submitted with the
Vocalization application form.
580.651 Introduction to Nonlinear Dynamics in
Course Requirements
Physiology
580.702 Neuroengineering A total of 10 one-semester courses must be completed within
five years. The curriculum consists of five required courses in
585.408 Medical Sensors and Devices
systems engineering, two core HSE concentration courses,
two HSE electives and the completion of a Systems Engi-
585.611 Practices of Biomedical Engineering neering Master’s Project with a Human Systems Engineering
585.614 Applications of Physics and Technology to focus. Prior or concurrent completion of 645.467 Man-
Biomedicine agement of Systems Projects and 645.462 Introduction to
585.626 Biomimetics in Biomedical Engineering Systems Engineering (taken in either order) is generally a
585.634 Biophotonics prerequisite to more advanced courses in the curriculum.
153
Systems Engineering
Systems Engineering Core Courses techniques and methodologies are employed to determine
The core systems engineering curriculum required courses where vulnerabilities might exist, modeling and simulation
includes: to determine trade-offs in the protection of systems, and a
645.462 Introduction to Systems Engineering variety of techniques for the creation of systems that protect
and defend information systems.
This concentration trains students to integrate the
645.767 System Conceptual Design diverse areas of information assurance with the skills and
645.768 System Design and Integration tools of a systems engineer and a computer scientist. Students
645.769 System Test and Evaluation will gain a deeper understanding of the field and a broader
645.808 Human Systems Engineering Master’s perspective of the system challenges, which they will be able
Graduate Programs
Project to immediately implement on the job.
Human Systems Engineering Core Courses Admission Requirements

Four HSE courses come from the following set of courses Applicants must meet the general requirements for admis-
offered in the human systems engineering curriculum. Stu- sion to the Engineering for Professionals program. In addi-
dents are required to file a program plan listing the courses tion, the applicant should have a degree in a technical field
they plan to take. The program plan must be approved by from a regionally accredited college or university, an ABET
the student’s advisor. (Accreditation Board of Engineering and Technical) accred-
The two required HSE courses are: ited program, and have a minimum of one year of appropri-
645.450 Foundations of Human Systems ate full-time work experience in that field. The applicant
Engineering must have compiled an average of B or above for courses
in mathematics, physics, engineering and physical sciences.
645.451 Integrating Humans and Technology The applicant’s preparation must have included mathemat-
ics through integral calculus, a course in programming, and
Human Systems Engineering Elective Courses
a computer networking or structures course. A résumé must
The remaining two courses in the HSE concentration may be
be submitted with the application form.
chosen from the following elective courses:
635.461 Principles of Human-Computer Interaction Course Requirements
645.754 Social and Organizational Factors in A total of 10 one-semester courses must be completed within
Human Systems Engineering five years. The curriculum consists of six required courses in
645.755 Methods in Human-System Performance systems engineering, two required courses in information
Measurement and Analysis assurance, and two elective courses in information assurance.
Prior or concurrent completion of 645.467 Management
Information Assurance Systems Engineering of Systems Projects and 645.462 Introduction to Systems
Concentration Engineering (taken in either order) is generally a prerequisite
Systems engineering methodologies are required to develop, to more advanced courses in the curriculum.
evaluate, protect, and maintain highly integrated and com-
plex information systems to ensure these systems are able to Systems Engineering Core Courses
work together effectively and efficiently in the face of increas- The core systems engineering curriculum of six required
ing threats and advancing technologies. When sophisticated courses includes:
attempts are made to exploit weaknesses in information sys- 645.462 Introduction to Systems Engineering
tems, attention is required in the computing environments,
the supporting infrastructure, and the boundaries and inter-
faces of their networks. A systems approach to the security 645.767 System Conceptual Design
architecture, design, development, and testing of information 645.768 System Design and Integration
systems will address information assurance requirements to
645.769 System Test and Evaluation
control access, protect assets, validate security subsystems,
train users, and manage systems. 645.806 Information Assurance Systems Engineering
The information assurance (IA) operations protect and Master’s Project
defend information and information systems to ensure their
availability, integrity, authentication, confidentiality, and Information Assurance Core Courses
non-repudiation. IA provides for restoration of information Four IA courses come from the following set of courses
systems by incorporating protection, detection, and reaction offered in the information assurance curriculum. Students
capabilities focused on risk management to address threats are required to file a program plan listing the courses they
using a cost-effective approach in the context of the envi- plan to take. The program plan must be approved by the
ronment of the fielded systems. Using systems engineering, student’s advisor.
154
Systems Engineering
The two required information assurance courses are and Technical) accredited program, and have a minimum
offered at the Applied Physics Laboratory: of one year of appropriate full-time work experience in that
695.401 Foundations of Information Assurance field. The applicant must have compiled an average of B or
above for all courses in mathematics, physics, engineering,
and other engineering or physical sciences. The applicant’s
Elective Courses preparation must have included mathematics through mul-
tivariate calculus and statistics. A résumé must be submitted
Information Assurance Systems Engineering with the application form.
Two additional elective courses may be selected from these
courses offered at the Applied Physics Laboratory or the Course Requirements
Dorsey Center: A total of 10 one-semester courses must be completed within
Graduate Programs
695.421 Public Key Infrastructure and Managing five years. The curriculum consists of 10 required courses
E-Security in systems engineering, including a two-semester systems
695.422 WWW Security engineering master’s thesis. Prior or concurrent completion
of 645.467 Management of Systems Projects and 645.462
Introduction to Systems Engineering (taken in either order)
Technologies
is generally a prerequisite to more advanced courses in the
curriculum.
Modeling and Simulation Systems Engineering
Concentration Systems Engineering Core Courses
One of the most important tools in systems engineering is
The core systems engineering curriculum of seven required
the use of modeling and simulation processes to help elicit
courses includes:
system requirements, support the analysis of alternatives,
estimate and optimize cost and schedule, predict system per- 645.462 Introduction to Systems Engineering
formance, and improve systems processes. Models and simu- 645.467 Management of Systems Projects
lations help perform experiments that may not be possible in 645.767 System Conceptual Design
the real world due to physical, environmental, or economic
645.768 System Design and Integration
constraints.
Modeling and simulation should be used to support 645.769 System Test and Evaluation
engineering activities throughout the full systems life cycle. 645.801-802 Systems Engineering Master’s Thesis
From concept, design, and testing to evaluating product per-
formance, model-based tools provide the means for experi- Modeling and Simulation Core Courses
mentation and analysis to better understand the attributes The three required modeling and simulation courses are:
and expected behavior of the system and to evaluate the 625.403 Statistical Methods and Data Analysis
processes and strategies needed to optimize the system perfor-
645.757 Foundations of Modeling and Simulation
mance. M&S also accounts for human systems integration,
in Systems Engineering
manufacturability, and sustaining the product.
In this systems engineering concentration, students 645.758 Advanced Systems Modeling Simulation
complete the core systems engineering courses, followed by
a rigorous course in statistical methods and data analysis. This Software Systems Engineering Concentration
latter course from the applied and computational mathemat- Systems engineers are increasingly responsible for developing
ics program provides an understanding of statistical tech- software-intensive systems. This concentration provides the
niques and the use of several methodologies for practical fundamental knowledge and skills required for specifying
world problems. Two additional required courses provide and implementing a system development, combined with
the use of modeling and simulation following the systems the competencies needed to define and document software
engineering life cycle and experience in advanced modeling requirements, analyze and design software systems, and man-
and simulation topics including VV&A, markup languages, age the software project activities. Following the core systems
cost modeling, simulation interoperability, and collabora- engineering courses, software courses emphasize structural
tive environments. Students are expected to take the two- and design techniques, software safety, software project cost
semester systems engineering master’s thesis course that will and schedule estimation, and techniques for evaluating soft-
lead to a publication. ware maturity and efficiency.
This concentration will provide systems engineers with
Admission Requirements the knowledge of software engineering and management to
Applicants must meet the general requirements for admission improve their effectiveness with systems development that
to the Engineering for Professionals program. In addition, includes significant software components. Teamwork and
in a technical field from a regionally accredited college or group projects are emphasized throughout the curriculum to
university, an ABET (Accreditation Board of Engineering prepare students for real-life work environments.
155
Systems Engineering
Admission Requirements Advanced Certificate for Post-Master’s Study

Applicants must meet the general requirements for admis- The challenges in developing products and in solving sys-
sion to the Engineering for Professionals programs. In addi- tems problems are complex and multidisciplinary, requiring
tion, the applicant should have a degree in a technical field engineers who understand and execute programs that require
from a regionally accredited college or university, an ABET enterprise systems-of-systems engineering discipline. A struc-
(Accreditation Board of Engineering and Technical) accred- tured, balanced, comprehensive approach is needed to devel-
ited program, and have a minimum of one year of appropriate op sophisticated architectures, employ innovative enterprise
full-time work experience in that field. The applicant must management processes, and deploy global high-technology
have compiled an average of B or above for all courses in products, often made up of multiple systems. This graduate
mathematics, physics, engineering, and other engineering program is designed to provide senior engineers and manag-
Graduate Programs
or physical sciences. The applicant’s preparation must have ers who already have a master’s degree in systems engineering
included mathematics through integral calculus, a course in with advanced state-of-the-art tools and knowledge that goes
programming, and a course in computer networking or struc- beyond the traditional systems engineering program.
tures. A résumé must be submitted with the application form. The objective of the Advanced Certificate for Post-Mas-
ter’s Study in Systems Engineering is to provide students with
Course Requirements skills and habits of thought employing advanced principles
A total of 10 one-semester courses must be completed within of systems engineering and to contribute to the development
five years. The curriculum consists of six required courses in of new knowledge through directed research and publica-
systems engineering and four courses in software engineering. tion. It is expected that students will participate, possibly in
Prior or concurrent completion of 645.467 Management collaboration with their employers, in developing and evolv-
of Systems Projects and 645.462 Introduction to Systems ing the body of knowledge in this modern discipline and
Engineering (taken in either order) is generally a prerequisite in improving the systems engineering practices in complex
to more advanced courses in the curriculum. technology-based programs. Current definitions, methodolo-
gies, tools, and technologies used in academia, government,
Systems Engineering Core Courses
and industry will be explored.
The core systems engineering curriculum has six required The program builds upon the existing M.S. in Sys-
courses: tems Engineering that provides an integrated foundation
645.462 Introduction to Systems Engineering course series based on the acquisition project life cycle. The
645.467 Management of Systems Projects hundreds of EP systems engineering graduates over the last
645.767 System Conceptual Design decades, along with SE graduates of other institutions, are
645.768 System Design and Integration now engaged in leading their organizations in programs of
increasing value and complexity.
645.769 System Test and Evaluation
This certificate program will provide the opportunity
645.807 Software Systems Engineering Master’s to expand the student’s experience and knowledge horizons
Project to encompass the enterprise and integrated systems environ-
ments. An emphasis on commercial and government chal-
Software Engineering Core Courses
lenges will be explored. The courses are taught by current
Four software engineering courses come from courses offered
advanced systems engineering practitioners who are intimate-
in the computer science curriculum. Students are required
ly familiar with the current challenges facing government
to file a program plan listing the courses they plan to take.
and industry. Students should continue to expect relevant,
The program plan must be approved by the student’s advisor.
applied, and meaningful hands-on learning experiences
Three courses are required:
coupled with sound research into the latest problems facing
605.401 Foundations of Software Engineering systems engineering.
605.402 Software Analysis and Design
605.708 Tools and Techniques of Software Project Admissions Requirements
Management Applicants must have completed a master of science degree
in systems engineering (or a master of science in electrical
Elective Course engineering, mechanical engineering, computer science, or
The tenth course in the software systems engineering concen- a related technical field), and possess at least 10 years of pro-
tration may be chosen from the following elective courses: fessional experience as a practicing systems engineer. Alter-
605.407 Agile Software Development Methods natively, students must have earned a master of science in a
technical field, completed 645.462 Introduction to Systems
Engineering, and possess at least five years of professional
605.705 Software Safety work experience as a practicing systems engineer. Eligibility
will be determined by a current résumé and verification in
an employer recommendation letter. JHU graduates must
156
Systems Engineering
supply evidence of their previous systems engineering degree tion in a referenced journal or two EP 700-level courses in a
through a copy of their transcript. Systems engineering grad- program approved by the student’s advisor.
uates of other institutions must request official transcripts be
sent to EP. Required Course
645.742 Management of Complex Systems
Course Requirements
645.753 Enterprise Systems Engineering
The Advanced Certificate for Post-Master’s Study in Sys-
tems Engineering is awarded after completion of six courses 645.761 Systems Architecting
beyond the Master of Science in Systems Engineering. It is 645.771 System of Systems Engineering
intended to add depth and breadth in the discipline. The
program consists of four required courses and two advanced Elective Courses
Graduate Programs
electives. The student’s program will be planned in consulta- 645.803-804 Post Master’s-Systems Engineering
tion with an advisor. The two advanced electives can be two Research Project
semesters of an independent systems engineering research (Two semesters or two approved 700 level courses in
project leading to a paper suitable for submission for publica- the EP offering.)
Course Descriptions
645.450 Foundations of Human Systems specialist and the essential role that systems engineering plays
Engineering as an integral component of program management. Topics
Systems are designed, built, and used by humans. Their pur- include requirements analysis, concept definition, system syn-
pose is to help people meet their goals and perform their thesis, design trade-offs, risk assessment, interface definition,
tasks. This course introduces the foundations of HSE from engineering design, system integration, and related systems
which system requirements and design elements are derived. engineering activities. The course defines the breadth and
The objective is to provide students with the knowledge of depth of the knowledge that the systems engineer must acquire
human capabilities and introduce human systems engineer- concerning the characteristics of the diverse components that
ing concepts and design principles. Human capabilities constitute the total system. Special topics such as simulation
include visual, auditory, and touch senses, motion, cognitive and models and test and evaluation are discussed in relation
processing and decision making. Human systems engineering to the systems engineering viewpoint. Students address typical
concepts and design principles include human factors engi- systems engineering problems that highlight important issues
neering; training; maintenance; environmental, safety and and methods of technical problem resolution.
health; survivability; habitability; manpower; and personnel. Prerequisites: An engineering, science, or mathematics degree
Prerequisite: 645.462 Introduction to Systems Engineering. and one year of experience in science or engineering.
Beecher, McKneely Anderson, Barton, Biemer, Brown, Daghita,
Dever, Flanigan, Holub, Kane, Pardoe, Pavalko,
645.451 Integrating Humans and Technology
Reitz, Smith, Sweeney, Syed, Thompson
In this course students will learn how to integrate the human
into the system and to derive human-based system require- 645.467 Management of Systems Projects
ments and design elements. Design preparation will com-
The course addresses the management of a technical project
prise collecting/compiling missions, scenarios, user profiles,
from concept to operational use, with emphasis on the func-
and conceptual designs. Human-System analysis processes
tions, roles, and responsibilities of the project manager. From
will introduce work flow; task; social and communications
the development of a proposal to the delivery of a product to a
networks; gap, function, decision and risk analyses. Topics
customer, the efforts to conceive, plan, budget, schedule, moni-
include: culture and team dynamics; modeling and simula-
tor, control/direct, and report the progress of the project are
tion of human capabilities; human-centered prototyping;
discussed. Throughout the project life cycle, the need for good
human performance measurement; supervision of automa-
communications, interface and configuration management,
tion; human considerations in system integration, produc-
and conflict resolution is emphasized. Students assume the role
tion and deployment; and user support.
of project managers who must use management tools such as
Prerequisite: 645.462 Introduction to Systems Engineering. WBS, EVM, and CPN and who must address typical problems
Beecher, Ockerman that arise in the conduct of a high-technology systems project.
645.462 Introduction to Systems Engineering Prerequisite: Admission into the Systems Engineering pro-
This course introduces students to the fundamental principles gram (not available for technical management students).
of systems engineering and their application to the devel- Bernstein, Brown, Cormier, Dever, Hein, Leveque,
opment of complex systems. It describes how the systems Jacobus, Neace, Saunders, Schuck, Utara,
engineering viewpoint differs from that of the engineering Simons, Holbrook, Robinson
157
Systems Engineering
645.469 Systems Engineering of Deployed Systems agement to address methods and approaches for aligning
Systems engineering theory typically focuses on the early system architectures with enterprise business rules and the
design and development phases of a system’s life cycle, yet underlying IT architecture; development and implementa-
over the life of a system, the bulk of engineering effort and tion consistent with enterprise strategic objectives; and the
the associated costs are not realized until the operations and total enterprise system and capabilities, with diverse complex
support (O&S) phase. This course will examine the impor- subsystems. This course uses the systems engineering life
tance of designing O&S considerations early in a system’s cycle as a framework for linking outcome-based engineer-
life cycle by identifying the appropriate logistic elements and ing analysis and decision making with enterprise strategic
measures, while introducing the necessary analytical pro- objectives, addressing methods and tools for managing com-
cesses and tools to support end-to-end life cycle engineering plexity, determining measures of effectiveness, and assessing
Graduate Programs
requirements. Manufacturing and production operations return on investment from an engineering perspective. The
will be presented along with the elements that support a complex nature of enterprises will be discussed, including the
system once it is fielded (maintenance planning, reliability multiplicity of technical and business components involved
prediction, supply support, training, shipping, and system in delivering enterprise capability, as well as methods for
disposal). The course will also explore the requirements and modeling and analysis of their interdependence. Business and
processes associated with major upgrades to deployed systems technical interdependencies between infrastructure, comput-
and the logistics management techniques that must be imple- ing, applications, services, and end-user environments will be
mented during initial fielding and deployment. A class proj- discussed. Particular attention will be paid to outcome-based
ect and real-world case studies will underscore the theory and management, understanding total cost of ownership for
techniques associated with deployed systems engineering. delivered capabilities, and end-to-end systems engineering.
Prerequisites: 645.462 Introduction to Systems Engineering Prerequisite: M.S. in Systems Engineering or advisor approval.
or 645.467 Management of Systems Projects. Dahmann, Montoya, Ziarko
Finlayson, Herdlick, Metz
645.754 Social and Organizational Factors in
645.742 Management of Complex Systems Human Systems Engineering
Traditional systems engineering is usually applied to closed, The objective of this course is to provide students with the
precise, and recursive systems with the assertion that the knowledge of organizational structure, social interaction,
methodologies used can be scaled up to more elaborate sys- and group behavior needed to reflect the full context of use
tem of systems. This course addresses the more realistic and in the practice of systems engineering. It examines the char-
emerging field of the management of complex systems, where acteristics of organizations and of social contexts that influ-
multiple current development efforts with disparate and non- ence system requirements and design and describes systems
linear attributes characterize the system components. Engi- engineering processes for discovering, representing, and ana-
neering complex systems must account for the likelihood lyzing such information in practice. It covers the application
of multiple disciplines, differing scales, often unpredictable of these factors throughout the system lifecycle. Additional
future states, irreducible uncertainty, and non-linear behav- topics include systems in high-reliability organizations, sys-
ior. Multi-customer, -corporations, -governments, -technolo- tem support for group situation awareness and distributed
gies, and -systems now must be considered on a global scale decision-making in command and control systems, and sys-
with a mix of new and legacy systems. The student will be tems engineering for context-aware and social media systems.
encouraged to think differently and creatively about the man- Prerequisites: 645.462 Introduction to Systems Engineering.
agement approaches to developing complex systems and to
Bos, Gersh
utilize adaptive strategies and tools including modeling and
simulation, pattern recognition, non-linear dynamics, chaos 645.755 Methods in Human-System Performance
theory, and control systems. Special attention will be given Measurement and Analysis
to risk assessment and management for dynamic systems.
Case studies and examples will be drawn from commercial This course focuses on human-systems performance measure-
industry and DoD systems acquisition programs. Students ment (HsPM) methods used to determine whether human-
will be expected to discuss several readings and complete system requirements are met and if the systems’ design
an academic paper to explore in depth one or more of the provides effective and efficient human-system performance.
concepts discussed. Students will gain knowledge of HsPM study design proto-
cols, data collection tools and methods, analysis techniques
Prerequisite: M.S. in Systems Engineering or advisor approval. and processes, and procedures required to execute studies
Crownover with human participants. The course will provide students
with an understanding of HsPM in the context of system
645.753 Enterprise Systems Engineering design; workplace design; environment, safety, and occupa-
Enterprise systems engineering is a multidisciplinary tional health; training; and maintenance. Students will be
approach combining systems engineering and strategic man- exposed to heuristic evaluations; modeling and simulation
158
Systems Engineering
of human tasking, including tools for measuring physical 645.758 Advanced Systems Modeling Simulation
limitations, cognitive load, and fatigue; and system testing This course is a continuation of Foundations of Model-
with the human element. ing and Simulation in Systems Engineering, and provides
Prerequisites: 645.462 Introduction to Systems Engineering. in-depth exposure to the field of modeling and simulation
(M&S) from the perspective of M&S as an essential tool
Staff
for systems engineering. Advanced statistical methods are
used to conduct requirements-driven simulation analysis and
645.756 Metrics, Modeling, and Simulation for
experimentation. The course provides treatment of advanced
Systems Engineering
M&S topics, including verification, validation, and accredi-
This course takes an integrated, in-depth view of founda- tation techniques; methods for simulation interoperability
tional statistical concepts, modeling, and simulation tech-
Graduate Programs
and composability; modeling of the system environment,
niques. Knowledge of typical system-level key performance both natural and man-made; modeling of system costs; and
parameters and their stochastic characterization is critical the establishment of collaborative M&S environments. The
to the systems engineering process as the basis for decision- course also explores continuous and real-time simulation.
making from early system conceptualization through retire- Students are exposed to the techniques used to form concep-
ment. Relevant probability and statistics concepts are covered tual models of mechanical (both translational and rotation-
in context of SE decision points. Techniques in experimental al), electrical, fluid, thermal, biological, and hybrid systems.
design, data collection, analysis, and modeling of system The conceptual models are transformed into mathematical
metrics as a function of system use and environment are models and implemented in a modern simulation package.
explored as they pertain to characterizing system, subsystem, State of the art tools are explored and each student is given
and component performance. Finally, implementing mod- the opportunity to conduct a simulation study of a complex
els in analytic simulations to support requirements, design, system. Each student will present a case study and complete
upgrade, and replacement/retirement phases of the SE pro- a project. Upon completion of the course, the student will
cess provides the systems engineer with a solid foundation for be able to conduct or lead the development of the model of
making and justifying difficult decisions. a complex physical system, the modeling of the input data,
Prerequisites: 645.462 Introduction to Systems Engineering, and analyze the results to support decisions at key milestones
645.467 Management of Systems Projects, and 645.767 Sys- of a system’s lifecycle.
tem Conceptual Design. Prerequisite: 645.757 Foundations of Modeling and Simula-
West, Youngblood, Vick, Dixon, Ryals, Ruben tion in Systems Engineering and 625.403 Statistical Method
and Data Analysis.
645.757 Foundations of Modeling and Simulation Coolahan, Jones
in Systems Engineering
This course provides an introduction to the field of modeling 645.761 Systems Architecting
and simulation (M&S) from the perspective of M&S as an As the systems that systems engineers face become more
essential tool for systems engineering. Topics emphasize the complex, it is no longer sufficient to use “good engineering
use of M&S to establish and verify key performance param- practices.” The complex systems of today need to be archi-
eters, system and subsystem functionality, and interfaces. tected before design work can begin. This course examines
The course presents an overview of the types of models and the principles and art of systems architecting when developing
simulations used across the phases of the systems engineering both individual systems and systems that are components of
life cycle. The strengths and limitation of M&S are explored a system or federation of systems. The objective is to provide
with respect to the application of M&S use in SE. Examples students with the principles, techniques, and hands-on experi-
will be given for several types of systems, including systems ence of architecting modern, complex systems. Students will
developed under the U.S. Department of Defense acquisi- learn the latest architecture development techniques using
tion process. State-of-the-art M&S tools are introduced, and DoD and commercial architectural frameworks, then extend-
each student is given the opportunity to construct a model or ing those frameworks to specific problems involving unique
simulation using a tool of their choice. The Arena modeling systems development environments. Topics include the man-
tool will be used for some examples. Upon completion of agement of underlying system and data models and the special
the course, the student will be able to recognize when M&S architecting requirements of command, control, and commu-
will provide meaningful support to a technical program, nications systems. Special attention will be placed on visual-
select the appropriate modeling techniques for a given task, izing architecture artifacts—qualitatively and quantitatively
lead the development of the model and the modeling of the evaluating architectures and the systems model they repre-
input data, and analyze the results to support decisions at key sent—and utilizing system architectures for investment deci-
milestones of a system’s life cycle. sions. Case studies from actual experiences will be presented.
Prerequisite: 645.462 Introduction to Systems Engineering. Prerequisite: M.S. in Systems Engineering or advisor approval.
Coolahan, Jones Henry, Ryder, Topper
159
Systems Engineering
645.764 Software Systems Engineering ment, system development models, customer integration
This course for systems engineers covers software engineering into the design process, and design disciplines and practices.
principles, artifacts, and approaches for the development of The course uses a system problem scenario extensively to
software systems. Topics include software engineering pro- illustrate systems engineering principles and specific product
cesses and metrics; real-time, distributed, configurable, and design issues.
object-oriented software; alignment of software systems with Prerequisite: 645.767 System Conceptual Design or permis-
overall system design; software-unique aspects of planning, sion of the student’s advisor and the instructor.
requirements, architecture analysis, design, implementation, Ahlbrand, Barton, Biemer, Britcher, Campbell, Fidler,
testing, and maintenance; understanding important software Harmatuk, Haser, Martinell, Saunders, Saxon,
engineering constraints (performance, security, networking, Secen, Smith, Utara, Warren, White
Graduate Programs
etc.); and technology trends in software engineering today.

Student teams will conduct case studies for a project. 645.769 System Test and Evaluation
Prerequisite: 645.462 Introduction to Systems Engineering. This course focuses on the application of systems engineering
Note: Students may not enroll in this course if they have principles to the test and evaluation of system elements and,
already completed 595.763 Software Engineering Manage- ultimately, of the total system. Test requirements, selection
ment. This course is not available to technical management of critical test parameters, analysis of test results, and deter-
students. mination of remedial action in the event of discrepancies are
Britcher, Mosley, Pafford, Saunders, Secen, all systems engineering functions. Topics include validation
Tamer, Thomas and verification, similarities and differences in the nature of
hardware and software testing, test tools and test procedures,
645.767 System Conceptual Design testing during hardware-software integration, quality assur-
ance test, environmental test, and operational test and evalu-
This course addresses in detail the systems engineer’s respon-
ation. Student problems include scenario case studies using
sibilities and activities during the conceptual phases of a
examples developed in the several previous courses.
system development program. Systems engineering tools
commonly employed at this stage of a program are presented Prerequisite: 645.768 System Design and Integration or per-
along with selected problems that illustrate both the appli- mission of the student’s advisor and the instructor.
cability and limitations of commonly employed tools and Fidler, Finlayson, Harmatuk, Holub, Kim, Kryzstan,
procedures. The course steps through conceptual design Neace, O’Connor, Ryba, Selby, Sprigg, Tarchalski,
beginning with analysis of needs and objectives and pro- Thompson, Ziarko
ceeding to the exploration of alternative concepts and the
selection of a concept that best meets goals of performance, 645.771 System of Systems Engineering
timeliness, and affordability. Topics include definition of This course addresses the special engineering problems asso-
operational scenarios, functional analysis, risk assessment, ciated with conceiving, developing, and operating systems
system trade-offs, measures of effectiveness, and requirements composed of groups of complex systems closely linked to
formulation. Emphasis is on the application of these systems function as integral entities. The course will start with the
engineering techniques in a team environment to a class underlying fundamentals of systems’ requirements, design,
project. Students apply systems engineering methods learned test and evaluation, and deployment, and how they are altered
from reading and lectures to the development of a realistic in the multi-system environment. These topics will then be
system in an ongoing project in a team format. extended to information flow and system interoperability,
Prerequisites: 645.462 Introduction to Systems Engineering confederated modeling and simulation, use of commercial
and 645.467 Management of Systems Projects, or permission off-the-shelf elements, and systems engineering collabora-
of the student’s advisor and the course instructor. tion between different organizations. Advanced principles
of information fusion, causality theory with Bayesian net-
Biemer, Britcher, Flanigan, Keller, Levin, Moreno,
works, and capability dependencies will be explored. Several
Paulhamus, Russell, Ryder, Saxon, Secen, Smith,
case studies will be discussed for specific military system of
Smyth, Topper, Utara, Vaughan
systems, including missile defense and combatant vehicle
645.768 System Design and Integration design, as well as selected commercial examples.
This course addresses the systems engineering objectives, Prerequisite: M.S. in Systems Engineering or advisor approval.
responsibilities, and activities during the demonstration and Biemer, Ciotti, Fidler, Jones, Montoya
validation and the engineering and manufacturing develop-
ment phases of a system development program. Systems engi- 645.800 Systems Engineering Master’s Project
neering procedures and tools employed during these phases This course provides the experience of applying systems engi-
are identified and their use illustrated. Topics include the neering principles and skills learned in the formal courses to
relationship between a system specification and the system a specific practical project that is suggested by the student
design, systems engineering management plan, risk manage- and is presented in a formal proposal. The product of the
160
Systems Engineering
system project is a final report, as well as interim reports 645.805 Biomedical Systems Engineering Master’s
and an oral presentation to permit review of the project Project
objectives and approach. A student typically has a mentor This course is intended for students in the biomedical systems
who is a member of the systems engineering faculty. The engineering concentration and provides the experience of
program chair, vice chair, and mentor review proposals and applying systems engineering principles and skills learned in
reports. The total time required for this course is comparable the formal courses to a specific biomedical systems project
to the combined class and study time for the formal courses that is suggested by the student and is presented in a formal
(formerly 645.770). proposal. The product of the biomedical system project is a
Prerequisite: 645.769 System Test and Evaluation or permis- final report, as well as interim reports and an oral presenta-
sion of the program chair or vice chair. tion to permit review of the project objectives and approach.
Graduate Programs
Seymour, Utara, Thompson A student typically has a mentor who is a member of the
biomedical or systems engineering faculty. The biomedical
645.801-802 Systems Engineering Master’s Thesis program chair, the systems engineering vice chair, a systems
This course is designed for students in the systems engineer- engineering mentor, and a biomedical mentor review student
ing master’s program, working with an advisor to conduct proposals and reports. The total time required for this course
independent research in the field of systems engineering is comparable to the combined class and study time for the
leading to a paper that is publishable in a refereed journal. formal courses.
It is also desirable the paper be presented in a professional Prerequisite: Completion of all courses applicable to the bio-
meeting. The intent of the research is to advance the body medical systems engineering master’s degree.
of knowledge and the understanding of systems engineering Staff
practices, the improvement of systems engineering practices
in industry and in government, the evolution of systems 645.806 Information Assurance Systems
engineering tools and techniques, and the solution of systems Engineering Master’s Project
development issues in the acquisition of advanced systems. This course is intended for students in the information assur-
Students intending to pursue a doctoral degree should enroll ance systems engineering concentration and provides the
in this course. experience of applying systems engineering principles and
Prerequisite: Completion of all other courses applicable to the skills learned in the formal courses to a specific information
systems engineering master’s degree. assurance system project that is suggested by the student and
is presented in a formal proposal. The product of the infor-
Note: Students who plan to register for this course will need
mation assurance system project is a final report, as well as
to contact the Systems Engineering Program Office (443-
interim reports and an oral presentation to permit review of
778-6002) 4-6 weeks prior to the semester start date.
the project objectives and approach. A student typically has a
Strawser mentor who is a member of the computer science or systems
engineering faculty. The computer science program chair, the
645.803-804 Post Master’s-Systems Engineering
systems engineering vice chair, a systems engineering mentor
Research Project
and a computer science mentor review student proposals and
This course is designed for students in the systems engineer- reports. The total time required for this course is comparable
ing post master’s advanced certificate program, working with to the combined class and study time for the formal courses.
an advisor to conduct independent research in the field of
Prerequisite: Completion of all other courses applicable to the
systems engineering leading to a paper that is publishable in
information assurance systems engineering master’s degree.
a refereed journal. It is also desirable the paper be presented
in a professional meeting. The intent of the research is to Staff
advance the body of knowledge and the understanding of
645.807 Software Systems Engineering Master’s
systems engineering practices, the improvement of systems
Project
engineering practices in industry and in government, the
evolution of systems engineering tools and techniques, and This course is intended for students in the software systems
the solution of systems development issues in the acquisition engineering concentration and provides the experience of
of advanced systems. applying systems engineering principles and skills learned
in the formal courses to a specific software systems project
Prerequisite: M.S. in Systems Engineering and three of the that is suggested by the student and is presented in a formal
four required advanced post master’s systems engineering proposal. The product of the software system project is a final
courses. report, as well as interim reports and an oral presentation to
Note: Students who plan to register for this course will need permit review of the project objectives and approach. A stu-
to contact the Systems Engineering Program Office (443- dent typically has a mentor who is a member of the computer
778-6002) 4-6 weeks prior to the semester start date. science or systems engineering faculty. The computer science
Strawser program representative, the systems engineering vice chair, a
161
Systems Engineering
systems engineering mentor, and a computer science mentor

review student proposals and reports. The total time required
for this course is comparable to the combined class and study
time for the formal courses.
Prerequisite: Completion of all other courses applicable to the
software systems engineering master’s degree.
Staff
645.808 Human Systems Engineering Master’s

Project
Graduate Programs
This course is intended for students in the human systems

engineering concentration and provides the experience of
applying systems engineering principles and skills learned
in the formal courses to a specific human systems project
that is suggested by the student and is presented in a formal
proposal. The product of the human systems project is a final
report, as well as, interim reports and an oral presentation to
permit review of the project objectives and approach. A stu-
dent typically has a mentor who is a member of the systems
engineering or human systems concentration faculty. The
systems engineering chair, a systems engineering mentor,
and a human systems concentration mentor review student
proposals and reports. The total time required for this course
is comparable to the combined class and study time for the
formal courses.
Prerequisites: Completion of all courses applicable to the
Human systems engineering master’s degree.
Staff
162
Technical Management
Technical New for Fall 2012

The JHU Engineering for Professionals Technical Man-
Management
agement program has made arrangements with the Johns
Hopkins University Carey Business School for Technical
Management program students to take selected courses in the
Supervisory and management positions in scientific and engi-
Carey program. The Carey courses available to the Technical
neering organizations are usually awarded to staff members
Management students cover: Innovation and New Prod-
who have earned the respect of management and coworkers
uct Leadership, Entrepreneurial Ventures, Leadership Ethics
by excelling in their areas of technical expertise. They then act
and Creative Business Thinking. EP Technical Management
as “lead scientists” or “lead engineers,” directing the work of
students may take up to 6 credits of Carey Business School
other scientists or engineers. Although they have proved that
Graduate Programs
courses as electives toward their Technical Management
they have good judgment in strictly technical matters, there
degrees. Details on the available Carey Courses can be found
may be nothing in their past education or work experience
in Section VII of this catalog.
that has prepared them for supervisory and management
Students who are interested in these elective courses
responsibilities.
are encouraged to explore the Carey Business School web-
The overall objective of this program is to prepare indi-
site, carey.jhu.edu. Students also must contact the Technical
viduals trained and experienced in science or engineering
Management program chair as soon as possible to discuss the
in the elements of leading technical projects and organizing
Carey Business School course options.
and supervising technical personnel. The program is orga-
nized along five concentrations: project management—the
Program Committee
organization and direction of specific technical projects;
organization management—the organization and leading Joseph J. Suter, Chair
of people to accomplish technical objectives; and project/ Principal Professional Staff
organization management—a combination of the previous JHU Applied Physics Laboratory
two. A concentration in technical innovation management
James T. (Ted) Mueller, Vice Chair
addresses the personal and organizational management of
innovation and the development of new technical ventures.
JHU Applied Physics Laboratory
The newly offered concentration in quality management will
focus on preparing technical leaders to manage programs to William W. Agresti
high-quality standards like ISO9001, AS9100 and CMMI. Associate Dean for Professional Programs
The concentration will offer an introductory course as well as JHU Carey Business School
advanced courses focusing on the quality aspects of technical
Richard W. Blank
programs and software engineering.
Instructional methodology employs a mixture of lectures
on theory and practice by experienced technical senior lead-
ers and executives and realistic problem situations in which Alton D. Harris, III
students play a management role, dealing with problems General Engineer, Office of Disposal Operations,
and making decisions that are typically required of technical Environmental Management
managers. Management theories and tools are presented in U.S. Department of Energy
the context of problem situations. Professor of Mechanical Engineering
Appropriate emphasis is given to that blend of technical, JHU Whiting School of Engineering
administrative, business, and interpersonal skills required for
Stephen A. Shinn
the successful management of continuously changing high-
Deputy Director, Flight Projects
technology organizations and projects.
NASA Goddard Space Flight Center
Students are encouraged to pursue the entire master’s
degree, but in special approved cases may apply for the Grad-
uate Certificate in Technical Management. The requirements
for admission are the same as for the master’s degree and
to a graduate program outlined in this catalog (see Admis-
the student must complete six courses, as approved by the
sion Requirements). In addition, the applicant must have
program chair/vice chair, with a grade of B- or higher (see
a degree in a science or engineering field and must have a
Admission Requirements).
minimum of two years of relevant full-time work experience
in that field. A detailed resume must be submitted with the
application form.
163
Course Requirements I. Required Courses for Project Management

All students complete 10 one-term courses, at least three of (7 courses)
which must be 700-level courses, within five years. Students 595.460 Introduction to Project Management
may elect to pursue one of five concentrations: 595.461 Technical Group Management
• Project Management 595.464 Project Planning and Control
• Organization Management 595.465 Communications in Technical
• Project/Organization Management Organizations
• Technical Innovation Management 595.466 Financial and Contract Management
• Quality Management 595.763 Software Engineering Management
Graduate Programs
Neither a thesis nor knowledge of a foreign language is 645.462 Introduction to Systems Engineering
required in this program. Academic standards govern-
ing graduate study, as specified in this catalog, must be II. Required Courses for Organization Management
maintained. (7 courses)
595.460 Introduction to Project Management
Technical Management—Online 595.461 Technical Group Management
There are numerous courses in the Technical Management 595.463 Technical Personnel Management
program offered in a fully online format, and more courses
595.464 Project Planning and Control
are continually being developed. This increases the flexibility
of course offerings for students wishing to pursue studies in 595.465 Communications in Technical
either the on-site or online format, or a combination of both. Organizations
Course content is identical to that in the on-site offerings 595.466 Financial and Contract Management
but available in a paced, asynchronous mode over the Internet. 595.762 Management of Technical Organizations
Recorded lectures with associated multi-media content are
augmented with online discussions and weekly synchronous III. Required Courses for Project/Organization
office hours. Prospective and current students should consult Management (9 courses)
the EP website for the most current online course offerings, 595.460 Introduction to Project Management
course schedules, and procedures for online programs. 595.461 Technical Group Management
595.463 Technical Personnel Management
Course Descriptions
Technical Management courses are primarily for those stu- 595.465 Communications in Technical
dents who have been accepted as candidates for the master’s Organizations
degree. Degree candidates are given preference in registering. 595.466 Financial and Contract Management
Special Students, including students from other degree pro-
595.762 Management of Technical Organizations
grams, may be admitted on a space-available basis, providing
they meet the same admission criteria as Technical Manage- 595.763 Software Engineering Management
ment degree candidates. 645.462 Introduction to Systems Engineering
Prior or concurrent completion of 595.460 Introduc-
tion to Project Management and 595.461 Technical Group IV. Required Courses for Technical Innovation
Management (taken in either order) is generally prerequisite Management (10 courses)
to more advanced courses. Specific prerequisites for each The following seven are required:
course are shown under the individual course descriptions.
595.460 Introduction to Project Management
An approved program plan is required for preferential place-
ment in registering. 595.461 Technical Group Management
Courses numbered 600-level and above are open only to 595.464 Project Planning and Control
students who have been admitted to graduate status. 595.465 Communications in Technical
Courses are offered at the APL Education Center, the Organizations
Montgomery County Campus, the Dorsey Center, and the 595.466 Financial and Contract Management
Southern Maryland Higher Education Center in St. Mary’s 595.468 Fundamentals of Technical Innovation in
County. Please refer to the Course Schedule published each Organizations
term for exact dates, times, locations, fees, and instructors.
635.792 Management of Innovation
164
And three courses from the list below or from the 645.767 System Conceptual Design
Carey Business School course list (see Section VII): 645.768 System Design and Integration
595.463 Technical Personnel Management 645.769 System Test and Evaluation
595.762 Management of Technical Organizations
595.763 Software Engineering Management VI. Elective Courses for Project Management,
Organization Management, and Project/
645.462 Introduction to Systems Engineering
Organization Management Concentration
V. Required Courses for Quality Management 595.468 Fundamentals of Technical Innovation in
(7 courses) Organizations
595.460 Introduction to Project Management 595.740 Assuring Success of Aerospace Programs
Graduate Programs
595.464 Project Planning and Control 595.741 Engineering Quality Management
595.740 Assuring Success of Aerospace Programs 595.760 Introduction to Quality Management
595.741 Engineering Quality Management 595.766 Advanced Technology
595.760 Introduction to Quality Management 635.792 Management of Innovation
595.763 Software Engineering Management
VII. Elective Courses from The Johns Hopkins
645.462 Introduction to Systems Engineering University Carey Business School
And three elective courses from: EP Technical Management students may take up to 6 credits
595.461 Technical Group Management of Carey Business School courses as electives toward their
595.463 Technical Personnel Management Technical Management degree program. Current course
595.465 Communications in Technical descriptions of the available Carey courses can be found at
Organizations carey.jhu.edu.
595.466 Financial and Contract Management 131.601 Leadership Ethics Seminar
595.468 Fundamentals of Technical Innovation in 141.710 Effective Teams
Organizations 142.620 Leaderships in Organizations
595.766 Advanced Technology 151.770 Facilitating Strategic Change
635.792 Management of Innovation 152.710 Entrepreneurial Ventures
Course Descriptions
595.460 Introduction to Project Management 595.461 Technical Group Management
This course concentrates on the general methodology of This course covers the general functions and responsibilities
managing a technical project from concept to operational of a technical group supervisor. Topics include functions of a
use, with emphasis on the functions, roles, and responsibili- technical group in an R&D or engineering organization; pri-
ties of the project manager. Topics include career aspects of mary responsibilities of group supervisor; interactions with
project management; business factors affecting the project management, support organization, and project organiza-
and the manager; project organization, planning, execution, tion; organization of projects in group structure; develop-
and communications; the project life cycle; risk analysis; ment of work costs and schedules; progress monitoring and
interface management; design review; design control assess- reporting; introduction to personnel management— leader-
ment; reporting; and reaction to critical problems. Students ship, motivation, evaluation, and professional growth; reac-
are formed into groups, presented with a scenario that simu- tion to critical problems; technical leadership; and planning
lates the development of a high technology system, and are for the future. Students assume the roles of technical group
assigned to make decisions required of the project manager in supervisors in a high-technology organization. They address
the execution of the project. The project manager’s decisions typical problems in delegating responsibilities, staffing new
must then be effectively communicated (and perhaps defend- projects, dealing with project managers, and handling con-
ed) to a variety of audiences (represented by other students flicts and priorities.
and faculty) that include top management, the customer, Prerequisites: 595.460 Introduction to Project Management
functional management, and members of the project team. or the permission of the student’s advisor or the course
Prerequisites: An engineering, science, or mathematics degree instructor. In addition, an engineering, science, or math-
and two years’ work experience in science or engineering. ematics degree and two years’ work experience in science or
Bjerkaas, Blank, Buchanan, Dabbah, Finlayson, engineering or permission of the program chair/vice chair.
Fletcher, Holub, Powers, Seifert, Simpson, Battista, Bigelow, Bjerkaas, Fletcher, Hendricks,
Supplee, Tarchalski, Tuck Hestnes, Horne-Jahrling, Taylor, Tuck, Zuber
165
595.463 Technical Personnel Management oral presentations and participate in group and one-on-one
This course reviews the problems of personnel management discussions.
in a technical organization. Topics include environmental Prerequisite: 595.460 Introduction to Project Management
requirements for effective and innovative technical efforts, or 595.461 Technical Group Management, completed or
direction and motivation, leadership behavior, recruitment taken concurrently.
of technical staff, orientation and training programs, per- Bjerkaas, Cost, Fletcher, Horne-Jahrling,
sonnel placement and reassignment, assignment of work, Izenberg, Tuck
salary administration, personnel evaluation and counseling,
professional growth and promotion, technical obsolescence 595.466 Financial and Contract Management
and retraining, equal opportunity programs, employee griev- This course is an introduction to financial and contract man-
Graduate Programs
ances, and handling of conflict situations. Students explore agement for technical managers. Topics include financial and
typical personnel management situations that arise in a tech- management accounting (including elementary accounting
nical organization. principles, assets, liabilities, and stockholders’ equity); direct
Prerequisite: 595.461 Technical Group Management or per- and indirect costs, revenues, and profits; indices to financial
mission of the student’s advisor or the course instructor. position; use of financial reports; return on investment, net
present value; internal rate of return; and financial man-
Cormier, Hendricks, Jackson,
agement (including cash and funds flow statements). An
Lasky, Taylor, Williams
introduction to the principles of contract formation is pre-
sented—highlighting the distinctive characteristics of con-
tracting with the federal government—as well as the team
This course concentrates on the exploration of the planning concept for effective contracting and the role of the program
and control decisions required when developing a new high manager as a key team member. Subcontract management,
technology product. Students are formed into groups and competitive negotiation techniques, contract financing, and
presented with a scenario that requires the development of cost reimbursement are also included. Case studies supple-
a plan that will guide their organization through entry into ment theoretical discussions.
a new business area. When developing the new product-
Prerequisite: 595.460 Introduction to Project Management
offering plan, students must consider a wide variety of ques-
or 595.461 Technical Group Management, completed or
tions that their top management will need to have answered
taken concurrently.
prior to making a decision to either accept or reject the plan.
Other topics include the role of planning and control in proj- Langhauser, Warner, Wyant
ect management; processes for responding to a request for
595. 468 Fundamentals of Technical Innovation in
proposal (RFP); assignments to prepare a statement of work
Organizations
(SOW), a work breakdown structure (WBS), and a critical
path network (CPN) for the new product development plan; This course is designed to take graduate students majoring
earned value performance measurement; analysis of proj- primarily in technical disciplines through the fundamental
ect performance measures; integrated project planning; new aspects of managing technical innovations in organizations.
product development considerations, enterprise information It will draw on interdisciplinary concepts from the technical
systems applications; and risk management. and managerial fields of studies, and will specifically focus on
how technical innovation management drives the long-term
Prerequisites: 595.460 Introduction to Project Management or competitiveness of organizations operating in the global socio-
the permission of the student’s advisor or the course instructor. economic environment. One of the major objectives of this
Broadus, Campbell, Cormier, Devereux, Liggett, course is to help students understand various fundamental
McLoughlin, Pardoe, Shinn, Utara frameworks for managing technical resources, technical capa-
bilities and technical competencies for growth and renewal of
595.465 Communications in Technical Organizations their enterprises. Students will learn the basics of knowledge
This course covers problems and instruction in human com- management, intellectual property rights, and product-pro-
munications within a technical organization. Topics include cess lifecycle vis-à-vis international trade patterns.
the nature of difficulties in human communications (per- Sharif, Swann
ception and cognition, semantics, individual differences in
processing information, and listening), techniques for effec- 595.740 Assuring Success of Aerospace Programs
tive oral and written communications and presentations, Technical managers, systems engineers, lead engineers, and
problems in communication between supervisors and subor- mission assurance professionals will benefit from this course,
dinates, assignment of work, and reporting to management which focuses on the leadership of system safety and mis-
and sponsors. Students assume roles in various interpersonal sion assurance activities throughout the life cycle of a project
situations, meetings, discussions, and conflicts calling for a to achieve mission success. This advanced course provides
supervisor to write letters and memoranda; they also deliver crucial lessons learned and proven best practices that techni-
166
cal managers need to know to be successful. The integrated own work experiences in tailoring applications of the material
application of mission assurance and system engineering prin- to their workplace. Guest speakers discuss real-world exam-
ciples and techniques is presented in the context of aerospace ples of the various aspects of quality management. Students
programs, and is also applicable to other advanced technology participate in highly interactive classroom discussions based
research and development programs. Students discuss critical upon these materials and assignments.
risk-based decision-making required from system concept def- Cormier, Rahl
inition and program planning through design, procurement,
manufacturing, integration and test, launch, and mission 595.762 Management of Technical Organizations
operations. Shared experiences by senior aerospace leaders and This course reviews challenges in the management of high-
extensive case studies of actual mishaps explore quality man- technology organizations at the senior technical management
Graduate Programs
agement topics relevant to aircraft, missiles, launch vehicles, level. Topics include management of change and managing
satellites, and space vehicles. The course addresses contempo- managers; establishing organization, technical, and business
rary leadership themes, government policies, and aerospace objectives and strategies; market analysis, technology, and
industry trends in mission assurance requirements, organi- product development; planning and costing; staffing and
zational structure, knowledge sharing and communication, training to meet new needs; managing independent research
independent review, audit, and assessment. Mission assurance and development; organizational conflicts; technical, finan-
disciplines covered include risk management, system safety, cial, and personnel problems; and interaction with top man-
reliability engineering, software assurance, supply chain management, staff executives, peers, and subordinates. Students
agement, parts and materials, configuration management, assume the roles of senior technical managers dealing with
requirements verification and validation, nonconformance, typical problems in a department, including applied research,
and anomaly tracking and trending. product development, and engineering support in an envi-
Day ronment of rapidly changing technology.
Prerequisites: 595.460 Introduction to Project Management,
595.741 Engineering Quality Management 595.463 Technical Personnel Management, 595.464 Project
This course addresses quality assurance topics that are suitable Planning and Control, 595.465 Communication in Technical
in applications for various engineering disciplines. Course Organizations, 595.466 Financial and Contract Management,
discussions include the latest in quality and business manage- or permission of the student’s advisor and the instructor.
ment, strategic planning, productivity improvement tools, Harris, Mueller, Suter
techniques, and the implementation of quality initiatives.
Advanced topics related to the principles and application of 595.763 Software Engineering Management
total quality methodologies are presented. Students discuss This course covers the activities, methods, and processes
implementing quality assurance tools and systems, includ- needed to manage software engineering and software devel-
ing benchmarking, process control, quality measurement, opment projects using current best practices. Course material
concurrent engineering, Taguchi methods, supplier quality highlights the differences and the similarities in managing
management (SQM), and auditing. Current applications and software versus hardware projects. Topics include definition
strategies are introduced such as lean manufacturing philoso- and description of project framework activities and umbrella
phy, Deming’s PDSA cycle, Kaizen continuous improvement activities; estimating technical resources, project schedules,
process, strategic planning, total employee participation, and cost; fundamentals in tracking the project using earned
business process re-engineering, and the views of various value measurement; approaches to building quality, main-
quality “gurus.” The course covers the Malcolm Baldrige tainability, security, and other desirable characteristics into
Award criteria, and a comprehensive practical understanding the system from the beginning; communicating with teams
of the ISO 9001 and AS9100 standards are discussed. and customers; and CMMI and ISO. Students will develop
Day, Mueller, Seifert a management plan for a project.
Prerequisite: 645.462 Introduction to Systems Engineering or
595.760 Introduction to Quality Management permission of the student’s advisor or the course instructor.
Quality management is developed as an integrated system of Completion of 595.460 Introduction to Project Manage-
management for organizational improvement. Topics cov- ment is helpful. Students may not take this course if they
ered include the quality management guiding principles of have taken 645.764 Software Systems Engineering. This
leadership commitment, customer focus, employee involve- course is not available to systems engineering students.
ment/teamwork, continuous process improvement, and the Battista, Caruso, Cormier, Johnson, Thomas
systematic use of measurement data. Case studies of technical
organizations and government agency experiences describe 595.766 Advanced Technology
adapting quality management in diverse organizations to This course emphasizes the impact of recent technological
improve the performance of products and services in satisfy- advances on new products, processes, and needs, as well as
ing customer needs. Students draw upon theory and practice, the role of the technical manager in rapidly evolving technolo-
recent journal articles, multimedia presentations, and their gies. Subject areas and lecture content track current topics of
167
interest, such as trends and developments in microelectronics, 142.620 Leadership in Organizations

communications, computers, intelligent machines, and expert Students examine organizational behavior and leadership
systems. Advanced technologies in application areas such as from diverse perspectives focusing on the individual, group,
transportation, space, manufacturing, and biomedicine are and organization; climate and culture; industry and society,
also discussed. Students are encouraged to explore new tech- and the global environment. Experiential in design, the course
nology areas and share information with each other. The semi- draws on the organizational life of students and encourages
nar format encourages student participation that culminates practical application of the theories and ideas considered.
in a term paper on a new or emerging technology area. High levels of participation are maintained through the use
Prerequisite: 595.460 Introduction to Project Management of cases, simulations, discussion, and the class itself as a tem-
and/or 645.462 Introduction to Systems Engineering or per- porary organization.
Graduate Programs
mission of the student’s advisor and the instructor.

151.770 Facilitating Strategic Change
Seifert, Seymour, Strawser, Suter
The process of managing strategic change is not straightfor-
595.802 Directed Studies in Technical Management ward. Carefully developed plans for change can, and often
In this course qualified students are permitted to investigate do, disintegrate during implementation, disrupting not only
possible research fields or to pursue problems of interest production or service delivery, but also the lives of people who
through reading or non-laboratory study under the direction work within organizations. This course focuses on the process
of faculty members. of implementing change as the key facet and fundamental
challenge in managing strategic change. Students will gain an
Prerequisite: The directed studies program proposal form
understanding of how organizational change is achieved and
(available from the student’s advisor) must be completed
discover and enhance their personal capabilities and abili-
and approved prior to registration.
ties to navigate change. The course will examine the various
Note: This course is open only to candidates in the Master of theories and concepts of change, along with experiences and
Science in Technical Management program. dilemmas in practice, that together help us gain an under-
Suter standing of what contributes to the carrying out of success-
ful and lasting change. It will discuss how managers express
131.601 Leadership Ethics Seminar
agency in change and connect with others to produce change.
This course explores ethical leadership as a framework for
enterprise value creation in a complex environment of com- 152.710 Entrepreneurial Ventures
peting economic and moral claims. Students examine the This course focuses on the knowledge, skills, and attitudes
intrinsic ethical challenges of leadership and the concept of that enable entrepreneurs to pursue opportunities in business
a moral compass as a foundation for responding effectively development. Students form teams to experience each step of
to the ethical challenges of corporate citizenship and value the entrepreneurial process. The end result is an opportunity
creation in a competitive global economy. assessment of a business idea. Emphasis is placed on a hands-
on approach with learning supplemented by cases appropri-
141.710 Effective Teams
ate to each phase of the course. Entrepreneurs and subject
In today’s businesses, teams are a basic organizational build- experts expose students to real entrepreneurial operations and
ing block. ‘Teaming’ is perennially listed as one of the top businesses, such as incubator and venture capital firms, via
skills that recruiters look for in graduating MBAs. This course consultations and presentations.
conveys knowledge and practical tools that help students
become more productive team members and leaders. Top-
ics discussed include the characteristics of high performing
teams, leadership strategies for creating performing teams,
strategies for avoiding dysfunctional team dynamics, and best
practices for managing diverse and virtual teams.
168
Telecommunications and Networking Option
Telecommunications 605.775 Optical Networking Technology

605.777 Internetworking with TCP/IP II
605.778 Voice Over IP
and Networking Option 695.422 WWW Security
695.701 Cryptology
The field of telecommunications and networking is one of 695.721 Network Security
great importance to our society. As a technical discipline,
it draws from the more traditional fields of computer sci- Electrical and Computer Engineering
ence and electrical engineering. Although the Engineering 525.408 Digital Telephony
for Professionals program does not offer a separate master’s 525.414 Probability and Stochastic Processes for
degree in telecommunications and networking, students may
Graduate Programs
Engineers
pursue an option in this area as degree candidates in either 525.416 Communication Systems Engineering
computer science or electrical and computer engineering.
525.418 Antenna Systems
The wide variety of courses from both areas allows students,
525.420 Electromagnetic Transmission Systems
working with advisors, to structure programs that meet their
525.438 Introduction to Wireless Technology
professional development needs.
525.440 Satellite Communications Systems
Admission Requirements 525.441 Computer and Data Communication
Applicants must meet the general requirements for admission Networks I
to graduate programs outlined in this catalog in the general 525.707 Error Control Coding
Admission Requirements section. In addition, applicants 525.708 Interactive Methods in Communications
must meet the specific program requirements for either com- Systems
puter science or electrical and computer engineering (see 525.722 Wireless and Mobile Cellular
those programs for specific admission information). Communications
Course Requirements Networks II
Each degree candidate is assigned an advisor. Attainment of the
525.735 MIMO Wireless Communications
degree requires completion of 10 one-term courses specifically
525.736 Smart Antennas for Wireless Communications
approved by the advisor. Seven of the 10 courses must be in the
telecommunications and networking subject area as defined
by the course lists below. No more than one course with a 525.747 Speech Processing
grade of C, and no course with a grade lower than C, may be 525.751 Software Radio for Wireless Communications
counted toward the degree. The requirements for computer 525.754 Wireless Communication Circuits I
science degree candidates and those for electrical and computer 525.755 Wireless Communication Circuits II
engineering candidates can be found in the program descrip- 525.759 Image Compression, Packet Video, and
tions in the respective sections of the catalog. Students who Video Processing
select the telecommunications and networking option through 525.761 Wireless and Wireline Network Integration
the computer science program may take a maximum of three 525.768 Wireless Networks
telecommunications and networking courses from electrical 525.771 Propagation of Radio Waves in the Atmosphere
and computer engineering courses listed below. Electrical and 525.772 Fiber-Optic Communication Systems
computer engineering students who select the telecommunica- 525.776 Information Theory
tions and networking option are required to take either two or 525.783 Spread Spectrum Communications
three computer science telecommunications and networking 525.789 Digital Satellite Communications
courses as electives. All of these electives must be selected from 525.791 Microwave Communications Laboratory
the computer science courses listed below. 525.793 Advanced Communication Systems
Computer Science Undergraduate Transition Courses
605.471 Principles of Data Communications Networks Students who lack Electrical and Computer Engineering
605.472 Computer Network Architectures and course prerequisites may be required by their advisor to
Protocols take one or both of the undergraduate courses below. These
605.473 High-Speed Networking Technologies courses do not count toward the graduate degree. Note that
605.474 Network Programming 525.201 is not a prerequisite of 525.202.
605.475 Protocol Design and Simulation 525.201 Circuits, Devices, and Fields
605.477 Internetworking with TCP/IP I 525.202 Signals and Systems
605.478 Cellular Communications Systems
605.771 Wired and Wireless Local and Metropolitan Course Descriptions
Area Networks See the computer science or electrical and computer engi-
605.772 Network Management neering sections for course descriptions.
169
Policy Statements
Policy Statements the request for amendment. Additional information regarding

the hearing procedures will be provided to the student when
notified of the right to a hearing. (3) The right to consent to
Equal Opportunity/Nondiscriminatory Policy disclosures of personally identifiable information contained
as to Students in the student’s education records, except to the extent that
The Johns Hopkins University admits students of any race, FERPA authorizes disclosures without consent. Disclosure
color, gender, religion, age, national or ethnic origin, disabil- without consent is granted to school officials with legitimate
ity, marital status or veteran status to all of the rights, privi- educational interests. A school official is a person employed by
leges, programs, benefits, and activities generally accorded the University in an administrative, supervisory, academic or
or made available to students at the university. It does not research, or support staff position (including law enforcement
discriminate on the basis of race, color, gender, marital status, unit personnel and health staff); a person serving on the board
pregnancy, ethnicity, national origin, age, disability, religion, of trustees; or a student serving on an official committee, such
sexual orientation, gender identity or expression, veteran sta- as a disciplinary or grievance committee, or assisting another
tus, or other legally protected characteristic in any student school official in performing his or her tasks. A school official
program or activity administered by the university, includ- has a legitimate educational interest if the official needs to
ing the administration of its educational policies, admission review an education record in order to fulfill his or her profes-
policies, scholarship and loan programs, and athletic and other sional responsibility. (4) The right to file a complaint with the
university-administered programs or in employment. U.S. Department of Education concerning alleged failures by
Questions regarding Title VI, Title IX, and Section 504 should the university to comply with the requirements of FERPA.
The name and address of the Office that administers
Policy Statements
be referred to the Office of Institutional Equity, Garland Hall

130, Telephone: 410-516-8075, (TTY): 410-516-6225. FERPA is:
Admissions Policy Family Policy Compliance Office
Johns Hopkins University admits as regular students only U.S. Department of Education
persons who have a high school diploma or its recognized 400 Maryland Avenue S.W.
equivalent, or persons who are beyond the age of compulsory Washington, DC 20202-4605
school attendance in Maryland.
To be eligible for federal student aid, students who are Americans with Disabilities Act Policy (ADA)
beyond the age of compulsory attendance but who do not The Johns Hopkins University does not discriminate on the
have a high school diploma or its recognized equivalent must basis of gender, marital status, pregnancy, race, color, ethnic-
meet ability-to-benefit criteria or meet the student eligibility ity, national origin, age, disability, religion, sexual orientation,
requirements for a student who is home schooled. veteran status or other legally protected characteristic in any
student program or activity administered by the university or
Statement Regarding the Privacy Rights with regard to admission or employment.
of Students The 1990 Americans with Disabilities Act and the sub-
Notice is hereby given that the Johns Hopkins Engineering sequent 2008 Amendments Act, as well as the Rehabilitation
for Professionals program complies with the provisions of Act of 1973, prohibit postsecondary educational institutions
the Family Educational Rights to Privacy Act of 1974 (P.L. from discriminating on the basis of disability. A person with
93-380), as amended, and regulations promulgated thereun- a disability is defined as an individual who has a physical
der. The Family Educational Rights and Privacy Act (FERPA) or mental impairment that substantially limits one or more
affords eligible students, with certain rights with respect to major life activities, has a record of such an impairment, or is
their education records. They are (1) The right to inspect regarded as having such an impairment. For faculty, staff, and
and review the student’s education records within 45 days of students with disabilities, it is important to provide to the
the day the university receives a request for access. Students university a comprehensive evaluation of a specific disability
should submit to the Registrar written requests that identify from an appropriate qualified diagnostician that identifies the
the record(s) they wish to inspect. The Registrar will make disability, describes the current level of functioning in an aca-
arrangements for access and notify the student of the time and demic or employment setting and lists recommended accom-
place where the records may be inspected. If the records are not modations. The University provides appropriate, necessary,
maintained by the Registrar, the student will be advised of the and reasonable accommodations in programs and facilities for
correct official to whom the request should be addressed. (2) those individuals who are qualified.
The right to request the amendment of the student’s education The policy is available on the JHU Disability Support
records that the student believes are inaccurate or misleading. Services website at jhu.edu/disabilityservices. Questions
Students should write the university official responsible for the regarding compliance with the provisions of the Americans
record they want changed and specify why it is inaccurate or with Disabilities Act of 1990 and Section 504 of the Reha-
misleading. If the university decides not to amend the records bilitation Act of 1973 should be referred to Peggy Hayeslip,
as requested by the student, the student will be notified of the Director, ADA Compliance and Disability Services, Office of
decision and advised of his or her right to a hearing regarding Institutional Equity, 410-516-8949 or (TTY) 410-516-6225.
170
Policy Statements
Sexual Harassment Prevention and University’s legal obligation to respond appropriately to any
Resolution Policy and all allegations of sexual harassment.
The University prohibits acts of reprisal against any-
Preamble one involved in lodging a complaint of sexual harassment.
The Johns Hopkins University is committed to providing its Conversely, the University considers filing intentionally false
staff, faculty, and students the opportunity to pursue excel- reports of sexual harassment a violation of this policy.
lence in their academic and professional endeavors. This can The University will promptly respond to all complaints of
only exist when each member of our community is assured an sexual harassment. When necessary, the University will insti-
atmosphere of mutual respect, one in which they are judged tute disciplinary proceedings against the offending individual,
solely on criteria related to academic or job performance. The which may result in a range of sanctions, up to and including
University is committed to providing such an environment, termination of University affiliation.
free from all forms of harassment and discrimination. Each Complaints of sexual harrassment may be brought to
member of the community is responsible for fostering mutual Susan Boswell, Dean of Student Life, 410-516-8208; Ray
respect, for being familiar with this policy, and for refraining Gillian, Vice Provost for Institutional Equity; or Caroline
from conduct that violates this policy. Laguerre-Brown, Director of Equity Compliance and Educa-
Sexual harassment, whether between people of different tion, 410-516-8075 or (TTY) 410-516-6225.
sexes or the same sex, is defined to include, but is not limited
to, unwelcome sexual advances, requests for sexual favors, and University Alcohol and Drug Policy for Students
other behavior of a sexual nature when: In keeping with its basic mission, the University recognizes
Policy Statements
that its primary response to issues of alcohol and drug abuse
1. Submission to such conduct is made implicitly or explic-
must be through educational programs, as well as through
itly a term or condition of an individual’s employment or
intervention and treatment efforts. To that end, the University
participation in an educational program
provides appropriate programs and efforts throughout the
2. Submission to or rejection of such conduct by an individual year. The brochure “Maintaining a Drug-Free Environment:
is used as the basis for personnel decisions or for academic The Hopkins Commitment” is distributed annually to all
evaluation or advancement faculty, students, and staff of the Johns Hopkins University,
3. Such conduct has the purpose or effect of unreasonably and copies are available on request from the offices of the
interfering with an individual’s work or academic per- Faculty and Staff Assistance Program, 4 East 33rd Street,
formance or creates an intimidating, hostile, or offensive Baltimore, Maryland 21218; telephone 410-516-3800; or at
working or educational environment the Counseling and Student Development Center located on
the Homewood Campus; telephone 410-516-8270.
Fundamental to the University’s purpose is the free and open
exchange of ideas. It is not, therefore, the University’s pur- Policy on Possession of Firearms on
pose, in promulgating this policy, to inhibit free speech or University Premises
the free communication of ideas by members of the academic The possession, wearing, carrying, transporting, or use of a fire-
community. arm or pellet weapon is strictly forbidden on University prem-
ises. This prohibition also extends to any person who may have
Policy acquired a government-issued permit or license. Violation of
The University will not tolerate sexual harassment, a form this regulation will result in disciplinary action and sanctions
of discrimination, a violation of federal and state law, and up to and including expulsion, in the case of students, or termi-
a serious violation of University policy. In accordance with nation of employment, in the case of employees. Disciplinary
its educational mission, the University works to educate its action for violations of this regulation will be the responsibility
community regarding sexual harassment. The University of the divisional student affairs officer, dean or director, or the
encourages individuals to report incidents of sexual harass- vice president for human resources, as may be appropriate, in
ment and provides a network of confidential consultants by accordance with applicable procedures. Any questions regard-
which individuals can report complaints of sexual harassment. ing this policy, including the granting of exceptions for law
The means by which complaints are resolved can range from enforcement officers and for persons acting under the supervi-
informal to formal. sion of authorized University personnel, should be addressed
The University encourages reporting of all perceived to the appropriate chief campus security officer.
incidents of sexual harassment, regardless of who the alleged
offender may be. Individuals who either believe they have Campus Security Act Notice
become the victim of sexual harassment or have witnessed In accordance with the Crime Awareness and Campus Security
sexual harassment should discuss their concerns with any Act of 1990 (PL 102-26), as amended, and the regulations
member of the Sexual Harassment Prevention and Resolu- promulgated thereunder, the University issues its Annual
tion system. Complainants are assured that problems of this Security Report that describes the security services at each
nature will be treated in a confidential manner, subject to the of the University’s divisions and reports crime statistics for
171
Policy Statements
each of the campuses. The report is published online at jhu. Percentage of payment period or term completed = the
edu/~security/annual_report.htm. Copies of the report are number of days completed up to the withdrawal date divided
available from the University’s Security Department, 14 by the total days in the payment period or term. (Any break
Shriver Hall, 3400 North Charles Street, Baltimore, Maryland of five days or more is not counted as part of the days in the
21218-2689; telephone 410-516-4600. term.) This percentage is also the percentage of earned aid.
Funds are returned to the appropriate federal program
Photograph and Film Rights Policy based on the percentage of unearned aid using the following
The Johns Hopkins University reserves the right from time to formula:
time to film or take photographs of faculty, staff, and students Aid to be returned = (100 percent of the aid that could be
engaged in teaching, research, clinical practices, and other disbursed minus the percentage of earned aid) multiplied by
activities, as well as casual and portrait photography or film. the total amount of aid that could have been disbursed during
These photographs and films will be used in such publica- the payment period or term.
tions as catalogs, posters, advertisements, recruitment and If a student earned less aid than was disbursed, the insti-
development materials, as well as on the University’s website, tution would be required to return a portion of the funds and
for various videos, or for distribution to local, state, or national the student would be required to return a portion of the funds.
media for promotional purposes. Classes will be photographed Keep in mind that when Title IV funds are returned, the
only with the permission of the faculty member. student borrower may owe a debit balance to the institution.
Such photographs and film—including digital media— If a student earned more aid than was disbursed to him/
will be kept in the files and archives of The Johns Hopkins her, the institution would owe the student a post-withdrawal
University and remain available for use by the University disbursement which must be paid within 120 days of the
Policy Statements
without time limitations or restrictions. Faculty, students, and student’s withdrawal.

staff are made aware by virtue of this policy that the University The institution must return the amount of Title IV funds
reserves the right to alter photography and film for creative for which it is responsible no later than 30 days after the date
purposes. Faculty, students, and staff who do not want their of the determination of the date of the student’s withdrawal.
photographs used in the manner(s) described in this policy
Refunds are allocated in the following order:
statement should contact the Office of Communications and
Public Affairs. • Unsubsidized Federal Stafford loans
Faculty and students are advised that persons in public • Subsidized Federal Stafford loans
places are deemed by law to have no expectation of privacy and • Unsubsidized Direct Stafford loans (other than
are subject to being photographed by third parties. The Johns PLUS loans)
Hopkins University has no control over the use of photographs • Subsidized Direct Stafford loans
or film taken by third parties, including without limitation • Federal Perkins loans
the news media covering University activities.
• Federal Parent (PLUS) loans
Return of Title IV Funds Policy • Direct PLUS loans
The Financial Aid Office is required by federal statute to • Federal Pell Grants for which a return of funds is
recalculate federal financial aid eligibility for students who required
withdraw, drop out, are dismissed, or take a leave of absence • Federal Supplemental Opportunity grants for which a
prior to completing 60 percent of a payment period or term. return of funds is required
The federal Title IV financial aid programs must be recalcu- • Other assistance under this Title for which a return of
lated in these situations. funds is required (e.g., LEAP)
If a student leaves the institution prior to completing
60 percent of a payment period or term, the Financial Aid
Office recalculates eligibility for Title IV funds. Recalculation
is based on the percentage of earned aid using the following
federal return of Title IV funds formula:
172
Trustees and Administration

Trustees Rajendra Singh
Raymond W. Snow, ex officio
Pamela P. Flaherty
William F. Ward Jr.
Chair
James L. Winter
Francis B. Burch Jr., ex officio Shirley S. L. Yang
Richard S. Frary
Walter D. Pinkard Jr. Trustees Emeriti
Vice Chairs
Robert J. Abernethy
Jeffrey H. Aronson Leonard Abramson
Janie E. Bailey Peter G. Angelos
Lenox D. Baker Jr. C. Michael Armstrong
Abhiram R. Bhashyam Norman R. Augustine
Paula E. Boggs H. Furlong Baldwin
Michelle A. Brown Jeremiah A. Barondess
Charles I. Clarvit Ernest A. Bates
N. Anthony Coles David H. Bernstein
Ronald J. Daniels, ex officio Aurelia G. Bolton
Anthony W. Deering Randolph W. Bromery
Ina R. Drew George L. Bunting Jr.
Harvey P. Eisen Constance R. Caplan
Roger C. Faxon A. James Clark
Maria T. Fazio Victor J. Dankis
Marjorie M. Fisher Manuel Dupkin II
Louis J. Forster James A. Flick Jr.
Taylor A. Hanex Sanford D. Greenberg
Michael D. Hankin Benjamin Howell Griswold IV
Lee Meyerhoff Hendler
Governance
Robert D. H. Harvey
University
David C. Hodgson Rafael Hernandez-Colon
R. Christopher Hoehn-Saric David H. Koch
Frank L. Hurley Kwok Leung-Li
Stuart S. Janney III F. Pierce Linaweaver
Jeong H. Kim Raymond A. Mason
Donald A. Kurz Harvey M. Meyerhoff
Ethan D. Leder Charles D. Miller
Christopher H. Lee Naneen Hunter Neubohn
Joanne Leedom-Ackerman Ralph S. O’Connor
Alexander H. Levi Morris W. Offit
Sam Lichtenstein George G. Radcliffe
Roger C. Lipitz Mark E. Rubenstein
Diana C. Liu John F. Ruffle
Christopher E. Louie Arthur Sarnoff
Howard C. Mandel Frank Savage
Christina L. Mattin Wayne N. Schelle
Terri L. McBride, ex officio Herschel L. Seder
Gail J. McGovern Huntington Sheldon
Westley W. O. Moore R. Champlin Sheridan Jr.
David P. Nolan Wendell A. Smith
Ronald M. Nordmann Helmut Sonnenfeldt
Joseph R. Reynolds Shale D. Stiller
Brian C. Rogers Morris Tanenbaum
David M. Rubenstein Adena Wright Testa
Marshal L. Salant Calman J. Zamoiski Jr.
Charles W. Scharf
173
Principal Administrative Jonathan Bagger

Officers and Deans Vice Provost for Graduate and Postdoctoral Programs and
Special Projects
Ronald J. Daniels
President Stephanie L. Reel
Vice Provost for Information Technology
Lloyd B. Minor and Chief Information Officer
Provost and Senior Vice President for
Academic Affairs Scott L. Zeger
Vice Provost for Research
Daniel G. Ennis
Senior Vice President for Finance Caroline Laguerre-Brown
and Administration Vice Provost for Institutional Equity
Michael C. Eicher Pamela Cranston
Senior Vice President for External Affairs and Development Vice Provost for International Programs
Edward D. Miller (until 6/30/12) Kathryn J. Crecelius
CEO of Johns Hopkins Medicine Chief Investment Officer
Vice President for Medicine and Jessica P. Einhorn (until 6/30/12)
Dean of the School of Medicine Dean of the Nitze School of Advanced
Paul Rothman (starting 7/1/12) International Studies
CEO of Johns Hopkins Medicine Vali Nasr (starting 7/1/12)
Vice President for Medicine and Dean of the Nitze School of Advanced
Dean of the School of Medicine International Studies
Frederic W. Schroder Katherine S. Newman
Vice President for Development and Dean of the Krieger School of Arts and Sciences
Alumni Relations
Phillip Phan
Stephen S. Dunham Interim Dean of the Carey Business School
Vice President and General Counsel
David W. Andrews
Thomas S. Lewis Dean of the School of Education
Governance
Vice President for Government and Community Affairs

University
Nicholas P. Jones
Charlene Moore Hayes Dean of the Whiting School of Engineering
Vice President for Human Resources
Martha Hill
Glenn M. Bieler Dean of the School of Nursing
Vice President for Communications
Jeffrey Sharkey
Alan Fish Director of the Peabody Institute
Vice President for Real Estate and Campus Services
Michael J. Klag
Jerome D. Schnydman (until 6/30/12) Dean of the Bloomberg School of Public Health
Secretary of the Board of Trustees
Winston Tabb
Sarah S. Steinberg Dean of University Libraries and Museums
Vice Provost for Student Affairs
Ralph D. Semmel
Barbara Landau Director of the Applied Physics Laboratory
Vice Provost for Faculty Affairs
174
EP Advisory Council
EP Advisory Council
William G. Irby, Council Chair EP Advisory Council Adjunct Members
Division Vice President
Elizabeth K. Mayotte
One System Programs
Associate Dean
AAI Corporation
School of Education
Nelson Baker Johns Hopkins University
Vice Provost for Distance Learning and Professional
Education EP Advisory Council Ex-Officio Members
Georgia Institute of Technology
Dexter G. Smith, D. Eng.
Edward Borbely Associate Dean, Engineering for Professionals
Director, Center for Professional Development Whiting School of Engineering
College of Engineering Johns Hopkins University
University of Michigan
Nicholas P. Jones, Ph.D.
Rob Cardwell Benjamin T. Rome Dean
Vice President Whiting School of Engineering
Development Johns Hopkins University
Red Hat, Inc.
Edward Scheinerman, Ph.D.
John Fischer Vice Dean for Education
Director of Laboratory Programs Whiting School of Engineering
U.S. Navy OSD/DDR&E Johns Hopkins University
Chris Horne-Jahrling Megan Howie
Vice President Associate Dean for Development and Alumni Relations
Engineering, Technology, and Operations Whiting School of Engineering
Lockheed Martin Transportation and Johns Hopkins University
Security Solutions
Jerry Krill, Ph.D.
Governance
Lockheed Martin Corporation
University
Director of Science and Technology
David W. Jourdan Applied Physics Laboratory
President Johns Hopkins University
Nauticos LLC
Robyn Kravit
CEO
Tethys Research LLC
Kelly Miller
NSA/CSS Chief Systems Engineer and
Cryptologic Community Architect
Anne Schelle
Partner
Acta Wirelss
175
Faculty
Faculty
Whiting School of Engineering Harish Arora
Engineering for Professionals Director, Water Treatment
Narasimhan Consulting Services, Inc.
Joseph L. Abita (retired)
Principal Professional Staff Donald E. Asher
JHU Applied Physics Laboratory Senior Engineering Fellow
Raytheon
Philip J. Adelmann
Principal Professional Staff Dilipkumar Asthagiri
JHU Applied Physics Laboratory Assistant Professor
Stephen D. Ahlbrand (retired)
JHU Whiting School of Engineering
JHU Applied Physics Laboratory Robert M. Avjian
Member Technical Staff
Farid Ahmed
Lockheed Martin
JHU Applied Physics Laboratory Ra’id S. Awadallah
Jacqueline Akinpelu
Assistant Group Supervisor
JHU Applied Physics Laboratory Andrew C. Baisden
Hedy V. Alavi
Assistant Dean for International Programs
JHU Whiting School of Engineering Daniel W. Baker
Postdoctoral Fellow and Instructor
Charles Alexander (retired)
Johns Hopkins University
Senior Electrical Engineer
U.S. Department of Defense Amit Banerjee
Hollis Ambrose
JHU Applied Physics Laboratory Isaac N. Bankman
Lynne M. Ambuel Donaldson
Senior Cyber Engineer
JHU Applied Physics Laboratory George Barnas
Scientific Review Administrator
Mostafa S. Aminzadeh
National Institutes of Health
Professor, Mathematics
Towson University Frank T. Barranco
Technical Chief Geologist
Faculty
A. Rajah Anandarajah
Professor, Civil Engineering EA Engineering, Science and Technology, Inc.
JHU Whiting School of Engineering Timothy P. Barrett
Brian J. Anderson Software Engineer
Principal Professional Staff JHU Applied Physics Laboratory
JHU Applied Physics Laboratory Joseph M. Barton
John P. Anderson Vice President
Engineering Director Sierra Lobo, Inc.
Raytheon Missile Systems Corina C. Battista
Mehran Armand Senior Professional Staff
Senior Professional Staff JHU Applied Physics Laboratory
JHU Applied Physics Laboratory Chris W. Baumgart
Robert S. Armiger Senior Professional Staff
Associate Professional Staff JHU Applied Physics Laboratory
176
Faculty
Richard W. Baylor Barry A. Bodt

Senior Engineering Fellow Mathematical Statistician
Sensor Demonstration Programs U.S. Army Research Lab
Raytheon
John J. Boland
Pierre-Lo Bazin Professor Emeritus
Instructor, Department of Radiology Geography and Environmental Engineering
JHU School of Medicine JHU Whiting School of Engineering
Margaret E. Beecher-Deighan Bonnie K. Boland
Senior Professional Staff Water Resources Consultant
John E. Boon, Jr.
William D. Bell Operations Researcher Analyst
Principal Multidiscipline Systems Engineer Rand Corporation
The MITRE Corporation
Bradley G. Boone
Thomas E. Bergman Principal Professional Staff
Engineering Fellow, Systems Engineering JHU Applied Physics Laboratory
Raytheon
Raouf N. Boules
Michael R. Berman Professor and Department Chairperson
Senior Scientist Towson University
U.S. Food and Drug Administration
Allan B. Bowers
Joshua I. Bernstein Senior Engineering Manager
Director, Integrated Mission Capabilities The SI Company, Inc.
Northrop Grumman Corporation Corporation
Michael P. Boyle
Nicholas D. Beser Senior Professional Staff
Robert N. Britcher (retired)
Michael Betenbaugh Systems Architect
Professor, Chemical and Biomolecular Engineering IBM
William A. Broadus, III
Michael Bevan Professor of Program and Engineering Management
Associate Professor, U.S. Department of Defense
Chemical and Biolmolecular Engineering Defense Acquisition University
C. David Brown
Steven M. Biemer
Engineering Consultant
JHU Applied Physics Laboratory Grace S. Brush
Professor
Faculty
John D. Bigelow
Research and Exploration Development Branch Supervisor
JHU Applied Physics Laboratory Wayne A. Bryden
Vice President, Advanced Research
Allan W. Bjerkaas
ICx Technologies
Lecturer, Engineering for Professionals
JHU Whiting School of Engineering Thomas H. Buchanan
Director of Business Development
Richard W. Blank
Raytheon Solipsys
Deputy Business Area Executive
JHU Applied Physics Laboratory Jack L. Burbank
Greg W. Blodgett
Proposal Manager
Verizon Communications John Burkhardt
Associate Professor, Mechanical Engineering
Michael J. Bloom
U.S. Naval Academy
Principal Multidiscipline Systems Engineer
177
Faculty
Philippe M. Burlina Matthew A. Cherry

Principal Professional Staff Senior Software Engineer
JHU Applied Physics Laboratory Integrated Computer Concepts, Inc
Stephyn G. Butcher Priya R. Cherry
Data Scientist Business Development Engineer
National Institutes of Health Palantir Technologies
Kenneth A. Byrd Daniel Chew
Electronics Engineer Member of Technical Staff, DSP
U.S. Army, Night Vision and Electronic Sensors Directorate Digital Receiver Technology, Inc.
Jesus Caban Sang H. Chin
Research Scientist Branch Chief Scientist
National Intrepid Center of Excellence JHU Applied Physics Laboratory
Charles B. Cameron Philip W. Ching
Director of Technology President
SBG Technology Solutions, Inc. Aplix Research, Inc.
Robert Cammarata Kiran N. Chittargi
Professor, Materials Science and Engineering Systems Architect
JHU Whiting School of Engineering Lockheed Martin
Mark R. Campbell Eleanor Boyle Chlan
Senior Professional Staff Senior Lecturer, Engineering for Professionals
JHU Applied Physics Laboratory JHU Whiting School of Engineering
Henry E. Cardwell Michael J. Ciotti
Research Staff Project Manager
U.S. Army Corp of Engineers JHU Applied Physics Laboratory
John C. Carmody John P. Clancy
Senior Staff System Engineer Senior Professional Staff
Lockheed Martin JHU Applied Physics Laboratory
Stephen Carr Cyrus E. Clark

Principal Professional Staff Senior Principal System Engineer
JHU Applied Physics Laboratory Raytheon
Amy Houle Caruso Russell B. Cline

Program Manager Chief Engineer, Supply Chain Management
U.S. Naval Air Systems Command Raytheon
Beryl E. Castello Teresa A. Colella

Technology Manager
Faculty
Senior Lecturer
Department of Applied Math and Statistics JHU Applied Physics Laboratory
JHU Whiting School of Engineering Michael P. Collins
Ebrima N. Ceesay Chief Scientist
Cyberstaff Officer – Research Scientist RedJack, LLC
TASC, Inc. James E. Coolahan
Yaakov Y. Chaikin National Security Studies Fellow
Senior Enterprise Architect JHU Applied Physics Laboratory
Envieta, LLC Edward H. Cormier
Chief, Network Management Center
Harry K. Charles
U.S. Deptartment of Treasury
JHU Applied Physics Laboratory Richard S. Cost
Chief Scientist
Jeffrey S. Chavis
Software Engineer
178
Faculty
James J. Costabile Mohammad M. Dehghani

Vice President, Operations Department Head, Technical Services Department
Data Design Corporation JHU Applied Physics Laboratory
William (Max) B. Crownover Michael J. Dellarco
Principal Professional Staff Environmental Health Scientist
JHU Applied Physics Laboratory National Institutes of Health
Honggang Cui Joseph M. Demasco
Assistant Professor President
Chemical and Biomolecular Engineering Decision Support Consultants
JHU Whiting School of Engineering Daniel F. DeMenthon
Michael Curley Senior Research Scientist
President JHU Applied Physics Laboratory
Environmental Finance LLC Antonio DeSimone
James M. D’Archangelo Senior Professional Staff
Professor JHU Applied Physics Laboratory
U.S. Naval Academy Jason Dever
Roger Dabbah Manager
Principal Consultant Lockheed Martin
Tri-Intersect Solutions William S. Devereux
Judith S. Dahmann Supervisor, Engineering and Technology Branch
Senior Principal Systems Engineer Space Department
Jason G. DeVinney
Lise Dahuron
Research Staff
Lecturer, Chemical and Biomolecular Engineering
Center for Computing Sciences
Jerrery S. Dixon
Edward H. Darlington
Anton E. Dmitriev
Christian Davies-Venn
Director, Spine Research Center
Vice President and Chief Engineer Henry M. Jackson Foundation
PEER Consultants, P.C.
G. Daniel Dockery
Cleon E. Davis Principal Professional Staff
Scott E. Donaldson
Faculty
Dale E. Dawson Senior Vice President
Consulting Engineer SAIC
Northrop Grumman
German Drazer
Richard M. Day Assistant Professor
Chief of Mission Assurance Chemical and Biomolecular Engineering
Lucas de Melo Neal D. Durant
Project Engineer Principal Engineer
Geosyntec Consultants Gesyntec Consultants
Ryan M. Deacon Lars Dyrud
Senior Professional Staff Principal Professional Staff
JHU Applied Physics Laboratory JHU Applied Physics Laboratory
Christopher Deboy Harry A. Eaton
Principal Professional Staff Senior Research Scientist
179
Faculty
Clinton Edwards Charles R. Fidler

Senior Professional Staff Senior Systems Engineer
JHU Applied Physics Laboratory Mantech SRS
Marion L. Edwards (retired) Robert K. Finlayson
Consultant Principal Professional Staff
Joseph Ellis JHU Applied Physics Laboratory
Professor Michael J. Fitch
JHU Whiting School of Engineering Senior Professional Staff
Jill Engel-Cox JHU Applied Physics Laboratory
Research Leader David Flanigan
Batelle Memorial Institute Senior Professional Staff
John J. Ermer JHU Applied Physics Laboratory
Engineering Fellow Mark A. Fleischer
Raytheon Patent Examiner
Maria Ermolaeva U.S. Patent and Trademark Office
Consultant Mary L. Fletcher
Robert B. Evans Vice President
Principle Professional Staff Fraser Technical Consulting
JHU Applied Physics Laboratory Timothy Foecke
Joseph A. Everett Staff Materials Scientist
Electronics Engineer National Institute of Standards and Technology
U.S. Department of Defense Joelle Frechette
Raul Fainchtein Assistant Professor
Senior Scientists Chemical and Biomolecular Engineering
Michael Falk David E. Freund
Professor, Materials Science and Engineering Senior Professional Staff
JHU Whiting School of Engineering JHU Applied Physics Laboratory
Ronald S. Farris Robert L. Fry
Physicist Combat Systems Engineer
Charles L. Farthing Richard F. Gasparovic
Principal Professional Staff Principal Professional Staff
Faculty
Christian Fazi Larry Gately

Program Manager Lead Information Systems Engineer
U.S. Army Research Laboratory The MITRE Corporation
Leonid Felikson Roger P. Gaumond (retired)
Senior SOA Architect Penn State
Dovel Technologies James W. George
Tatyana Felikson Program Manager
Technical Analyst Maryland Department of Environment
Freddie Mac Sharon Gerecht
Douglas L. Ferguson Assistant Professor
Advisory Software Chemical and Biomolecular Engineering
Northrop Grumman Corporation JHU Whiting School of Engineering
Ronnie R. Fesperman Louis R. Gieszl (retired)
Mechanical Engineer Lecturer, Engineering for Professionals
National Institute of Standards and Technology JHU Applied Physics Laboratory
180
Faculty
Daniel E. Gilbert Jerry R. Hampton

Program Subcontracts Manager Principal Professional Staff
Northrop Grumman Corporation JHU Applied Physics Laboratory
Richard G. Gleerup Timothy Hanson
Engineering Manager Senior Consulting Engineer
Raytheon Opnet Technologies
Anthony Gorski Lorenz J. Happel
Partner Principal Professional Staff
Rich and Henderson, P.C. JHU Applied Physics Laboratory
David Gracias Salman Haq
Associate Professor Project Manager
Chemical and Biolmolecular Engineering U.S. Nuclear Regulatory Commision
Peter J. Harmatuk
Jeffrey Gray Senior Systems Engineer
Associate Professor Enterprise Informations Services
Chemical and Biolmolecular Engineering
JHU Whiting School of Engineering Alton D. Harris III
Engineer
Dale Griffith U.S. Department of Energy
Prinicipal Professional Staff
JHU Applied Physics Laboratory Stuart D. Harshbarger
Managing Director Chief Technology Officer
Larry Grimaldi Contineo Robotics LLC
System Engineer
The MITRE Corporation Edward Haser (retired)
Northrup Grumman Corporation
Robert Grossman (retired)
Lecturer, Engineering for Professionals S. Edward Hawkins, III
JHU Applied Physics Laboratory Principal Professional Staff
Seth D. Guikema
Assistant Professor Kalman Hazins
Geography and Environmental Engineering Senior Professional Staff
Thomas C. Gump William M. Healy
Lead Network Engineer Group Leader
University of Maryland National Institute of Standards and Technology
Laurel L. Gutierrez Erin K. Hein
Senior Engineering Fellow Chief Engineer, St. Inigoes
Faculty
Raytheon NAVAIR
Eileen B. Haase David Heinbuch
Lecturer Senior Professional Staff
JHU School of Medicine JHU Applied Physics Laboratory
Joseph W. Haber Timothy R Henderson
Senior Professional Staff Managing Partner
JHU Applied Physics Laboratory Rich and Henderson, P.C.
Greg Hager Stephen K. Hendricks
Professor and Chair Supervisory Engineer
Whiting School of Engineering U.S. Navy
A. Roger Hammons Matthew H. Henry
Prinicipal Professional Staff Senior Professional Staff
181
Faculty
Bryan E. Herdlick Jeffrey G. Houser

Systems Engineer Electronics Engineer
JHU Applied Physics Laboratory U.S. Army Research Lab
Cila Herman Joseph M. Howard
Professor, Mechanical Engineering Optical Engineer
JHU Whiting School of Engineering NASA
Margarita Herrera-Alonso Steven Hsiao
Professor, Materials Science and Engineering Professor
JHU Whiting School of Engineering JHU School of Medicine
David E. Hess Harry T. Hsu (retired)
Mechanical Engineer Lecturer, Engineering for Professionals
U.S. Naval Surface Warfare Center Patrick Hudson
Dag Hestnes President and Principal Engineer
Manager/Computer Scientist Moment Engineering, Inc.
U.S. Department of Defense Michael A. Huff
William B. Hilgartner Manager, Technical Strategy
Head of Science Department Raytheon
Friends School of Baltimore Todd C. Hufnagel
Stacy D. Hill Assistant Professor
Senior Engineer
Hsien-Ming J. Hung
Andrew J. Hinsdale
Director
Engineering Fellow, Systems Engineering
Raytheon
Terril N. Hurst
Elizabeth T. Hobbs
Senior Principal Systems Engineer
Consultant
Raytheon
Tarisa E. Holbrook
Lawrence A. Husick
Senior Program Manager
Senior Fellow
Praxis Engineering Technologies Foreign Policy Research Institute
James F. Holdener Pablo A. Iglesias
Chief Engineer Professor
The MITRE Corporation JHU Whiting School of Engineering
Brian L. Holub Robert W. Ivester
Principal Professional Staff Mechanical Engineer
Faculty
JHU Applied Physics Laboratory National Institute of Standards and Technology

Karl J. Holub Illysa B. Izenberg
Program Manager Managing Principal
JHU Applied Physics Laboratory Strategy and Training Partners, LLC
Christine Horne-Jahrling Daniel G. Jablonski
Vice President, Engineering/Operations Principal Professional Staff
Lockheed Martin Corporation JHU Applied Physics Laboratory
Nathaniel C. Horner Mia Z. Jackson
Research Assistant Section Supervisor
Carnegie Mellon University JHU Applied Physics Laboratory
Ramsey S. Hourani Bryan C. Jacobs
182
Faculty
Peter W. Jacobus Dimosthenis C. Katsis

Program Area Manager/Group Supervisor President
JHU Applied Physics Laboratory Athena Energy Corp
Jeffrey Janies Roger D. Kaul (retired)
Senior Analyst Consultant
RedJack LLC Kellie L. Keller
Shalani Jayasundera Consultant (Lead Associate)
Visiting Scientist Booz Allen Hamilton
CSC Federal Sector (Environmental Programs) Shaun Kildare
Brian K. Jennison Research Director
Principal Professional Staff Advocates for Highway and Auto Safety
JHU Applied Physics Laboratory Brian H. Kim
Newton E. Johnson Senior Professional Staff
Chief Engineer Standard Missile 3 JHU Applied Physics Laboratory
Raytheon Albert Kinney
Thomas E. Johnson Keith R. Kirkwood
Software Engineer Engineering Manager
JHU Applied Physics Laboratory Northrop Grumman
Anna M. Johnston Peter F. Klauss
Senior Software Designer Director of Engineering, Naval Systems
Embedics LLC Raytheon
Michael C. Jones Matthew I. Koch
Program Manager Senior Staff
Joshua A. Joseph, Jr. David L. Kriebel
Senior Technologist Professor of Ocean Engineering
CH2M Hill U.S. Naval Academy
Peter M. Joyce Iyengar N. Krishnan
Associate Professor Associate
Community College of Baltimore County, Catonsville Booz Allen Hamilton
Radford J. Juang Robert E. Krzystan
Associate Professional Staff Senior Advisory Engineer
JHU Applied Physics Laboratory Northrop Grumman Corporation
George E. Kalb Satyendra Kumar
Lead Research Engineer
Faculty
Senior Consulting Engineer
Northrop Grumman Corporation Streamsage, Inc.
Jed C. Kane Prasun K. Kundu

Systems Engineer, Lead Research Associate Professor
The MITRE Corporation JCET/UMBC, NASA Goddard Space Flight Center
Charles W. Kann Dar-ning Kung

Programmer Analyst/Lead Lecturer, Engineering for Professionals
CACI JHU Whiting School of Engineering
Stephen J. Karoly David Y. Kusnierkiewicz

Director, Systems Engineering/Chief Engineer Space Dept Chief Engineer
U.S. Customs and Border Protection (DHS) JHU Applied Physics Laboratory
Michael Karweit James Kuttler

Professor Principal Professional Staff
Chemical and Biomolecular Engineering JHU Applied Physics Laboratory
183
Faculty
Chol-bum Kweon William G. Liggett

Mechanical Engineer Operations Executive
U.S. Army Research Laboratory JHU Applied Physics Laboratory
Nicholas J. Langhauser Ralph G. Lightner (retired)
Department Head BCSD/CFO Consultant
JHU Applied Physics Laboratory Kevin M. Ligozio
Mitch M. Lasat Senior Professional Staff
Environmental Scientist JHU Applied Physics Laboratory
U.S. Environmental Protection Agency Jon S. Lindberg
Mary D. Lasky Principal Staff
Simon Y. Liu
Matthew Lear Director, National Agricultural Library
Senior Staff Engineer National Institutes of Health
Thomas H. Llanso
Chris A. Leddy Senior Professional Staff
Engineering Fellow JHU Applied Physics Laboratory
Raytheon
Thomas A. Longstaff
Richard B. Lee Senior Professional Staff
Principal RF Engineer JHU Applied Physics Laboratory
TASC, Inc.
Alfred M. Luckau
Kenneth Leidy Engineering Director I, System Design & Performance
Advisory Engineer Deputy Director
Northrop Grumman Corporation Raytheon
Paul G Leiman Jack L. Lum
Principal Senior Professional Staff
KeyWitness Consulting JHU Applied Physics Laboratory
Andrew M Lennon Jeanette Lurier
Principal Professional Staff New Sources and Methods Lead Architect; Campaign Lead
JHU Applied Physics Laboratory Raytheon Space Systems
Raytheon
Jeffery Lesho
Group Supervisor En Ma
JHU Applied Physics Laboratory Professor, Materials Science and Engineering
Andre Levchenko
Associate Professor Richard Madonna
Faculty
Johns Hopkins University Senior Consulting Engineer and Architect

Northrop Grumman
Richelle L Leveque
Senior Systems Engineer Horace Malcom
Lockheed Martin Principal Professional Staff
Jeffrey S. Levin
Systems Engineer Sanjeev R. Malushte
JHU Applied Physics Laboratory Senior Principal Engineer and Bechtel Corporation Fellow
Bechtel Corporation Power Corporation
William Lew
Director Jay A. Marble
Deloitte LLP Senior Engineer
Anastasios Liakos URS Corporation
Associate Professor Maury I. Marks (retired)
U.S. Naval Academy Consultant
184
Faculty
Steven Marra Timothy C. Miller

Associate Research Scientist Principal Professional Staff
Mark N. Martin Michael P. Minette
Principal Professional Staff Senior Principal Multi-Discipline Engineer
Paul M. Martinell Chandru J. Mirchandani
Branch Chief, Large Caliber Senior Staff Engineer
Aberdeen Proving Ground Lockheed Martin
Ward D. Maurer (retired) Amitabh Mishra
Professor Emeritus Assistant Research Professor
George Washington University Johns Hopkins University
Ralph M May (retired) Kimberlee M. Mitchel

Consultant Mitchel Consulting
President
Russell L. McCally
Principal Professional Staff Linda J. Moniz
JHU Applied Physics Laboratory Senior Professional Staff
Laura J. McGill
Chief Engineer, Air Warfare Systems Jaime Montemayor
Raytheon Senior Professional Staff
Thomas R. McGuire
Principal Engineer Matthew Montoya
Chief Engineer
Vulnerability Research Labs, LLC
Jennifer A. McKneely
Thomas G. Moore
Human Systems Scientist
Director, Enterprise Technical Executive
Northrop Grumman Corporation
Michael P McLoughlin
Michael S. Moreno
Biomedicine Business Area Executive (Acting)
Paul McNamee
Victoria V. Mosley
Computer Scientist Ph.D. Candidate, Technology
JHU Applied Physics Laboratory Capella University
Allan McQuarrie Zohreh Y. Movahed
Senior Professional Staff Regulatory Services Group Leader
Faculty
JHU Applied Physics Laboratory Washington Suburban Sanitary Commission
Richard C. Meitzler James T. Mueller (retired)
Principal Professional Staff Program Manager
William Menner Patricia K. Murphy
Mathematician Principal Professional Staff
Allan T. Mense Amir-Homayoon Najmi
Principal Engineering Fellow Senior Research Scientist
Raytheon Missile Systems JHU Applied Physics Laboratory
Karen A. Metz George Nakos
Senior Professional Staff Professor
JHU Applied Physics Laboratory U.S. Naval Academy
185
Faculty
Nasser M. Nasrabadi Michael E. Pafford

Senior Research Scientist Senior Professional Staff
U.S. Army Research Laboratory JHU Applied Physics Laboratory
Aaron B. Navarro Neil F. Palumbo
Computer Scientist Principal Professional Staff
National Institutes of Health JHU Applied Physics Laboratory
Kerrin S. Neace Anna Panchenko
Kinetic Engagement Program Area Manager/GPS Lecturer, Engineering for Professionals
David W. Nesbitt C. Thompson Pardoe (retired)
Principal Software Engineer Principal Professional Staff
America On Line/Mapquest JHU Applied Physics Laboratory
Christine L. Nickel
Chancellor T. Pascale
Lecturer, Engineering for Professionals
Associate Professional Staff
Richard J. Nieporent
Barton L. Paulhamus
Senior Principal Engineer
The MITRE Corporation Senior Professional Staff
John C. Noble
Principal Professional Staff Wayne Pavalko
JHU Applied Physics Laboratory Principal Professional Staff
Joan Nolan
Director, SEIT Strategy & Performance Moustapha N. Pemy
Northrop Grumman Corporation Assistant Professor
Towson University
Charles E. Nourrcier
Director, Systems Engineering John E. Penn
Raytheon Electrical Engineer
U.S. Army Research Laboratory
Brian D. O’Cain
Chief Engineer, Land Combat Product Line Dzung L. Pham
Raytheon Senior Scientist
John C. O’Connor Henry M. Jackson Foundation
Chief of Academics Harold L. Pierson
U.S. Naval Test Pilot School Consultant
Jennifer J. Ockerman Neil D. Pignatano
Senior Cognitive Systems Engineer Engineering Fellow
Faculty

Raymond G. Ohl, IV Vincent L. Pisacane
Optical Physicist/Engineer Lecturer, Engineering for Professionals
NASA Goddard Space Flight Center U.S. Naval Academy
Albert O. Olagbemiro Terence J. Plaza
Associate
Senior Program Manager
Booz Allen Hamilton
Raytheon
Marc Ostermeier
Harold J. Podell
Professor, Chemical and Biomolecular Engineering
Asstistant Director, IT Security
U.S. Government Accountability Office
Christopher Overcash
Senior Associate/Senior Project Manager Theodore Poehler
KCI Technologies, Inc. Research Professor
186
Faculty
Thomas P. Pole Michael A. Robert

Advanced Programs Engineer/Chief Architect Branch Head
Harris Corporation U.S. Naval Surface Warfare Center
David L. Porter Fred Y. Robinson
Oceanographer Information System Engineering Principal
JHU Applied Physics Laboratory The MITRE Corporation
Richard S. Potember Ian S. Robinson
Principal Chemist Senior Engineering Fellow
Christopher L. Powers Robbin Roddewig
Systems Engineer Principal Staff
JHU Applied Physics Laboratory GCI
Teresa Przytycka Benjamin M. Rodriguez
Lecturer, Engineering for Professionals Senior Professional Staff
Alan J. Pue Benjamin Rodriguez
Principal Professional Staff Senior Professional Staff
Jeffrey P. Raffensperger Igor B. Rogozin

Research Hydrologist Lecturer, Engineering for Professionals
U.S. Geological Survey/Water Resources Discipline JHU Whiting School of Engineering
Francis R. Rahl, Jr. (retired) John A. Romano

Manager, Systems Assessments Director, Information Technology
Northrup Grumman Corporation University of Maryland
Jessica C. Ramella-Roman Robert W. Root (retired)

Consultant
Assistant Professor
Catholic University William E. Roper
Professor
Mohamed Tamer Refaei
George Mason University
Senior Information Security Scientist
The MITRE Corporation Katherine M. Ruben
William M. Reid
JHU Applied Physics Laboratory Bruce R. Russell
Carl O. Reitz (retired)
Assistant Program Executive Officer
Faculty
NAVAIR Kenneth T. Ryals
Cheryl Resch JHU Applied Physics Laboratory
JHU Applied Physics Laboratory Carl V. Ryba
Program Manager
Randy J. Richards JHU Applied Physics Laboratory
Engineering Fellow
Raytheon Christopher M. Ryder
Kurt Riegel JHU Applied Physics Laboratory
Director, Environmental Technology
Department of the Navy John Sadowsky
Mathematician, Senior Associate
Daniel Rio Zeta Associates
Research Physicist
187
Faculty
Patrick M. Sain Albert V. Secen

Senior Principal Systems Engineer Systems Engineer Senior Staff
Raytheon Lockheed Martin
Jennifer L. Sample Helmut Seifert
Senior Professional Staff Program Manager
John Samsundar Jonathan W. Selby
Principal Professional Staff Multi-Discipline Systems Engineer
JHU Applied Physics Laboratory The MITRE Corporation
Rachel H. Sangree Hermann B. Sequeira
Program Chair, EP Civil Engineering Principal Professional Staff
JoAnne L. Saunders Samuel J. Seymour

Senior Engineering Manager Principal Professional Staff
Raytheon JHU Applied Physics Laboratory
Randy Saunders David A. Shaner

Section Supervisor Computer Scientist
JHU Applied Physics Laboratory U.S. Navy
Richard K. Sawyer Nawaz M. Sharif

Principal Consultant
Senior Staff Engineer
Myriad Solutions, Inc
Lee Shaw
Mark A. Saxon
Director, Multi-function Systems Architecture
Principal Research Scientist
Batelle
John W. Sheppard
Samuel J. Schappelle
Right Now Technologies Distinguished Professor
Consultant
Montana State University
James R. Schatz
David L. Sherman
Department Head, REDD
Research Associate
JHU Applied Physics Laboratory JHU School of Medicine
Harry J. Schepers Jin Shin
Vice President Principal Environmental Engineer
Praxis Engineering Washington Suburban Sanitary Commission
Todd E. Schlesinger Stephen A. Shinn
President Deputy Director, Flight Projects
Faculty
Surface Engineering Associates NASA

Tod M. Schuck Karthik Shyamsunder
Principal Member Engineering Staff Principal Technologist
Lockheed Martin VeriSign, Inc.
David A. Schug Dong-Jye Shyy
Computer Scientist Principal Communications Engineer
Naval Air Warfare Center Aircraft Division The MITRE Corporation
Shwu-Yan Scoggins Stanley G. Siegel
Lead Communications Engineer Systems Engineer
The MITRE Corporation Science Applications International Corporation
Keith L. Scott David P. Silberberg
Principal Engineer Principal Professional Staff
The MITRE Corporation JHU Applied Physics Laboratory
188
Faculty
Joseph M. Simons James C. Stafford

Communications Engineer Principal
The MITRE Corporation SRA International
Timothy Simpson Patrick H. Stakem
Professor of Program Management Senior Systems Engineer
U.S. Department of Defense, Defense Acquisition University MEI Technologies, Inc.
Michael D. Smeltzer Scott Stanchfield
Cyber Systems Architect Senior Profession Staff
Francis G. Smith Samuel C. Stanton
Networking Consultant Program Manager
BAE Systems U.S. Army Research Office
Thomas C. Smith Jamie Steadman
Senior Professional Staff Senior Professional Staff
Christopher R. Smith Thomas J. Stephens
Deputy Director, Systems Design and Performance Center Manager for Systems Engineering
Raytheon Raytheon
Gordon D. Smith (retired) Leonid Stern
Principal Professional Staff Professor
JHU Applied Physics Laboratory Towson University
Edward A. Smyth Jay A. Stern
Fellow, National Security Analysis Department Product Line Chief Engineer
Philip H. Snyder (retired) William T. Stiffler
Senior Consultant Technology Director, Depot Support Systems
General Electric Company Raytheon
Raymond M. Sova Andrew Stoddard
Principal Professional Staff Principal Environmental Engineer
JHU Applied Physics Laboratory Dynamic Solutions, LLC.
James C. Spall Dan M. Stoianovici
Principal Professional Staff Professor
JHU Applied Physics Laboratory JHU School of Medicine
Alexander A. Spector Larry D. Strawser
Research Professor Business Area Executive, Strategic Systems
Faculty
Richard Spencer Susan J. Supplee
Chief Contracting Officer
Magnetic Resonance Imaging and Spectroscopy Section NAVAIR
Dan C. Surber
Richard Spiegel Sr. Principal Systems Engineer, International Security
Senior Professional Staff Raytheon
Joseph J. Suter
Thomas S. Spisz Principal Professional Staff
Linda Swain
Gordon L. Sprigg Manager, SIGDEV PDS
Manager Boeing
189
Faculty
Wayne E. Swann (retired) Charles R. Thompson

Lecturer, Engineering for Professionals Engineering Fellow
William H. Swartz Christopher L. Thompson
Research Scientist Group Supervisor
Robert L. Sweeney Patricia M. Thompson
Program Manager Information Systems Engineer
Daniel P. Syed Willie L. Thompson II
Principal Professional Staff Associate Research Professor
JHU Applied Physics Laboratory Morgan State University
Shahin Taavoni Bunny J. Tjaden
President Professor, Computer Science
Structural Software, Inc. Anne Arundel Community College
John J. Tamer Ronald G. Tobin
Group Supervisor Electronics Engineer
JHU Applied Physics Laboratory U.S. Army Research Laboratory
Stanislaw E. Tarchalski John S. Topper
Professor and Independent Consultant Supervisor Technical Staff
IBM JHU Applied Physics Laboratory
Julie Tarr Fred Torcaso
Senior Professional Staff Senior Lecturer
Stewart W. Taylor William E. Torruellas
Technology Manager and Bechtel Corporation Fellow Senior Professional Staff
Bechtel Corporation JHU Applied Physics Laboratory
Leslie D. Taylor Craig R. Toussaint
Director, Flight Test Engineer President and CEO
U.S. Navy Toussaint Consulting Assoc.
David H. Terry Morgana M. Trexler
Senior Professional Staff Senior Professional Staff
Nitish V. Thakor Overton M. Tuck
Professor Principal Systems Engineer
Faculty
JHU Whiting School of Engineering DRS Technologies C3 and Aviation Co.

Michael E. Thomas David L. Tucker
Principal Professional Staff Civil Engineer, Geotechnical
JHU Applied Physics Laboratory U.S. Army Corps of Engineers
John A. Thomas Aleksandr Ukhorskiy
Research Senior Professional Staff
Cassie M. Thomas Thomas J Urban
Lead Associate Principal Professional Staff
Booz Allen Hamilton JHU Applied Physics Laboratory
G. Richard Thompson Christian J. Utara
Principal Professional Staff Chief Engineer, St. Inigoes
JHU Applied Physics Laboratory Naval Air Warfare Center Aircraft Division
190
Faculty
Leonard D. Vance Frank M. Wells

Senior Fellow Lead Operations Research Analyst
Raytheon The MITRE Corporation
Frank C. Vaughan Douglas Wenstrand
Program Manager (Physicist) Principal Professional Staff
Paul A. Vichot Roger L. West
Shon D. Vick Charles R. Westgate (retired)
Senior Professional Staff Professor Emeritus
James M. Whisnant
R. Jacob Vogelstein Program Manager
Michael J. White
Richard L. Waddell Senior Professional Staff
Michael E. White
Jeffrey C. Wadsworth Business Area Executire-Air & Missile Defense
Director JHU Applied Physics Laboratory
Raytheon
Keith Wichmann
Frank B. Wahl Senior Professional Staff
Technical Director, Mission Systems Integration JHU Applied Physics Laboratory
Raytheon
Peter R. Wilcock
Sue-Jane Wang Professor
Associate Director JHU Whiting School of Engineering
Warren O. Wilderson
Yang Wang Chief Engineer
Senior Technical Staff Raytheon
Lockheed Martin
Justin C. Williams
Sharon A. Warner Associate Research Professor
Principle Professional Staff JHU Whiting School of Engineering
Gregory S. Williams
Heath E. Warren Airborne Systems Flight Instructor
Information Technology Specialist Wyle
Faculty
Naval Air Warfare Center Aircraft Division
Jeredine Williams
Adam S. Watkins Senior Professional Staff
James E. Wilson
Michael J. Weisman Contractor
Senior Professional Staff U.S. Army Research Laboratory
Donald E. Wilson
Steven Weiss Principal Engineering Fellow
Electrical Engineer Raytheon
U.S. Army Research Laboratory
Jeffery W. Wilson
William J. Weiss Engineer Systems Architect 5
Senior Principal Engineer Northrop Grumman
Hazen and Sawyer, P.C.
191
Faculty
Liza Wilson-Durant Yan Yufik

Assistant Professor, Associate Chair, Department of Civil, Director, Research and Development
Environmental, and Infrastructure Engineering Institute of Medical Cybernetics
George Mason University
David Zaret
Nathaniel S. Winstead Research Analyst
Senior Research Meteorologist JHU Applied Physics Laboratory
JHU Applied Physics Laboratory Dajie Zhang
Audrey B. Winston Associate Research Scientist
Information Systems Engineer, Principal JHU Whiting School of Engineering
The MITRE Corporation Harold Zheng
Kerry N. Wood Senior Professional Staff
Senior Engineer JHU Applied Physics Laboratory
The Design Knowledge Company Yi Edward E. Zhou
Richard J. Wyant (retired) National Practice Leader,
Principal Professional Staff Bridge Instrumentation & Evaluation
JHU Applied Physics Laboratory USR Corporation
Youseph Yazdi Janice A. Ziarko
Lecturer, Engineering for Professionals Manager
JHU School of Medicine The MITRE Corporation
DongHun Yeo David Zielinski
Assistant Research Engineer System Engineer
Johns Hopkins University Raytheon
David W. Young James D. Zuber
Air and Missile Defense Department Network Management Systems
Simone M. Youngblood Gerald H. Zuelsdorf
Principal Professional Staff Senior Electrical Engineer
JHU Applied Physics Laboratory U.S. Department of Defense
Michael Yu Raytheon
Assistant Professor,
Department of Material Science & Engineering
Faculty
192
Directions and Maps
Directions and Maps
Directions and Maps

Applied Physics Laboratory and follow to first intersection. Make a left on Medical Cen-
ter Drive. The Montgomery County Campus is on the right
From Baltimore and I-95 (southbound): Take I-95 South
at 9601 Medical Center Drive.
from the Baltimore Beltway (I-695) intersection. Go 13
miles and take Columbia exit (MD Route 32 West). Go 2.5
miles and take Washington DC exit (US Route 29 South). Dorsey Student Services Center
Go 1.5 miles and take Johns Hopkins Road exit. APL is on From I-95 North or South: Exit I-95 towards Route 100 East.
the right about 0.5 mile. Turn right onto Pond Road, and Exit Route 100 towards Route 1 South. On Route 1, move
follow signs to the Kossiakoff Center parking on the lower to the inside lane. At the first light, turn left onto Dorsey
lot. Road (Route 103). After about one-third mile on Dors-
ey Road, turn left onto Douglas Legum Drive. Once on
From Washington and I-95 (northbound): Take I-95 North
Douglas Legum Drive, the JHU/Dorsey Center is on the
from the Capital Beltway (I-495) toward Baltimore. Go 8
second floor of the five-story high white building with blue
miles and take MD Route 216 West (toward Scaggsville).
windows.
Go 1.2 miles, turn right onto Leishear Road. Go 0.8 mile,
turn left onto Gorman Road. Go 0.7 mile, cross traffic circle From I-295 (Baltimore Washington Parkway) North or South:
and bridge over US Route 29. Road name changes to Johns Exit I-295 towards Route 100 West. Exit Route 100 using
Hopkins Road. APL is on the right about 0.5 mile. Turn the Coca-Cola Drive exit. Turn left onto Coca-Cola Drive
right onto Pond Road, and follow signs to the Kossiakoff towards Dorsey Road. At the end of Coca-Cola Drive, turn
Center parking on the lower lot. right onto Dorsey Road. After about 1 mile on Dorsey Road,
From US Route 29: Proceed on US 29 to the Johns Hopkins turn right onto Douglas Legum Drive. Once on Douglas
Road exits. APL is about 0.5 mile west. Turn right on Pond Legum Drive, the JHU/Dorsey Center is on the second floor
Road, and follow the signs to the Kossiakoff Center parking of the five-story white building with blue windows.
on the lower lot.
Homewood Campus
Montgomery County Campus From I-95 (southbound) or from I-695 (the Baltimore Beltway):
From Baltimore (via major arteries): Take Beltway (I-695) to Take the beltway toward Towson to exit 25. Take Charles
I-95 south. Continue toward Washington on 95 to the Cap- Street south for about 7 miles (when Charles Street splits
ital Beltway (I-495). Take 495 west to I-270 north. From a block after Loyola College and Cold Spring Lane, take
270 north, take the Shady Grove exit (Exit 8). Once on the the right fork). As you approach the university and cross
exit ramp, stay in the left lane. At the light make a left onto University Parkway, continue southbound but be sure to
Shady Grove Road. Proceed approximately .6 miles to Key jog right onto the service road. After you pass the university
West Avenue. Turn right at Key West Avenue and follow on the right, turn right onto Art Museum Drive. Just after
to first intersection. Make a left on Medical Center Drive. the Baltimore Museum of Art, bear right at the traffic island
The Montgomery County Campus is on the right at 9601 onto Wyman Park Drive. Take an almost immediate right
Medical Center Drive. through the University gates.
From Interstate 70 (I-70): Take I-70 west to Md. Route 97 From I-95 (northbound): Exit at I-395, then take the exit
(Georgia Avenue). Turn left on Md. Route 97. Go south to Martin Luther King Jr. Blvd. and follow the directions
on Md. Route 97 to Norbeck Road (Md. Route 28). Turn below.
right onto Norbeck Road. Continue west on Norbeck Road
From Maryland 295 (the Baltimore-Washington Parkway):
about 3.3 miles to East Gude Drive. Turn right onto East
Entering Baltimore, the parkway becomes Russell Street.
Gude Drive and proceed 4.3 miles across Rockville Pike
Stay on Russell Street until (with Oriole Park at Camden
(Md. Route 355) and Piccard Drive to Key West Avenue.
Yards looming before you) you reach the right-hand exit
Turn right on Key West Avenue. Cross Shady Grove Road
marked Martin Luther King Jr. Boulevard (look carefully for
and make a left at the first light onto Medical Center Drive.
this; the signs are small). Take King Boulevard until it ends
The Montgomery County Campus is on the right at 9601
at Howard Street (remain in one of the middle lanes of King
Medical Center Drive.
Boulevard to avoid a premature forced right or left turn).
From Washington, D.C. and Northern Virginia: Take the Beltway Turn left at Howard Street and proceed about 2 miles. One
(I-495) to I-270 north, and take the Shady Grove exit (Exit block past 29th Street (where Howard Street becomes Art
8). Once on the exit ramp, stay in the left lane. At the light Museum Drive), turn left at the traffic island (just before the
make a left onto Shady Grove Road. Proceed approximately Baltimore Museum of Art) onto Wyman Park Drive. Take
.6 miles to Key West Avenue. Turn right at Key West Avenue an almost immediate right through the University gates.
193
Directions and Maps
From the Jones Falls Expressway (I-83) southbound: Take the blocks to Massachusetts Avenue. The center is on the corner
Directions and Maps
28th Street exit to 28th Street east. Turn left on Howard of Massachusetts Avenue and 17th Street.
Street. One block past 29th Street (where Howard Street
From points south of the District of Columbia: From Vienna, Falls
becomes Art Museum Drive), turn left at the traffic island
Church, Tyson’s, and Route 66: Take Route 66 into Wash-
(just before the Baltimore Museum of Art) onto Wyman
ington. Go over the Roosevelt Bridge and follow the signs
Park Drive. Take an almost immediate right through the
to Constitution Avenue. Make a left turn onto 18th Street,
University gates.
N.W. (there is a left turn arrow). Follow 18th Street through
the city and across Connecticut Avenue (you will need to be
HEAT Center
in the middle lane in order to cross Connecticut Avenue and
From Baltimore and Washington, D.C. area: Take I-95 North to stay on 18th Street rather than veer left onto Connecticut).
exit 85 Route 22 towards Aberdeen/Churchville. Keep left Go one more block on 18th Street and you will come to
at the fork in the ramp. Turn left onto Churchville Road Massachusetts Avenue. Turn right onto Massachusetts Ave-
(Route 22). Turn left onto Technology Drive. The Center is nue, go one block to 17th Street, and the center is located on
on the left-hand side. the corner of Massachusetts Avenue and 17th Street.
From Alexandria, South Arlington, 495, 95, 395, and Route 1:
Southern Maryland Higher Education Center,
Take I-495 or 95 to 395. Take 395 (or Route 1) over the
St. Mary’s County
14th Street Bridge and follow the signs for 14th Street, N.W.
From Lexington Park: Take Maryland Route 235 north Take 14th Street to Thomas Circle at M Street. Get in the
approximately six miles to Airport Road. Turn left on Air- far right lane and take the outer circle 3/4 of the way around
port Road, and go about one-fourth mile to the Southern until you reach the turn-off for Massachusetts Avenue (it
Maryland Higher Education Center on the left. is just one lane at first, alongside green railing over a tun-
nel—you will merge with Massachusetts Avenue traffic).
From Calvert County: Take Maryland Route 4 south. At Solo-
Take Massachusetts Avenue to Scott Circle at 16th Street
mons, cross the Thomas Johnson Bridge, and continue four
and follow Massachusetts Avenue around the circle to 17th
miles to the stoplight at Maryland Route 235. Turn right
Street. The center is located on the corner of Massachusetts
on Route 235, and go north past the Wildwood Shopping
Avenue and 17th Street. An optional route would be to take
Center to Airport Road. Turn left on Airport Road, and go
14th Street through Thomas Circle to P Street. Turn left
about one-fourth mile to the Southern Maryland Higher
onto P Street and take P Street to 17th Street where you
Education Center on the left.
would turn left. The center is on the corner of 17th Street
From Charles County: Take Maryland Route 5 south to St. and Massachusetts Avenue. This route would allow for more
Mary’s County. About 20 miles south of Waldorf, Route 5 street parking options and would avoid traffic backed up on
branches to the right toward Leonardtown, and the main Massachusetts Avenue.
four-lane road continues straight and becomes Maryland
Route 235. Continue on Route 235 approximately 12 miles Parking at Montgomery County Campus
to Airport Road. Turn right on Airport Road, and go about
Colonial Parking: 1625 Massachusetts Avenue
one-fourth mile to the Southern Maryland Higher Educa-
(202-295-8220)
tion Center on the left.
This garage in the Washington Center is open from 7 a.m.
Washington D.C. Center until 8 p.m. weekdays ONLY. While you cannot enter the
garage after 8 p.m., you may exit at any time. The parking
From points north of the District of Columbia: I-95 to 495 (Capi- rate is $6 after 5 p.m.; otherwise, it’s $7 per hour or $14 all
tal Beltway) to exit 30, Route 29 south toward Silver Spring. day. Enter the garage from Massachusetts Ave. or 17th street.
Follow Route 29 through downtown Silver Spring and cross Since it is sometimes difficult to enter this garage at 5 p.m.
Georgia Avenue until you reach the circle at the intersection (especially on Mondays and Wednesdays), we recommend
of 16th Street, N.W. Turn left onto 16th Street. 16th Street that you arrive a few minutes early or park at Central Park-
to Scott Circle bearing to the right to avoid the underpass. ing (see below).
Turn right onto Massachusetts Avenue. The center is one
block down on the right. An optional route would be to take Central Parking: 1225 Connecticut Avenue (202-223-9225)
I-95 to 495 to exit 33 (Chevy Chase, Connecticut Avenue). Parking is also available at the Central Parking garage locat-
Make a left at the exit onto Connecticut Avenue toward ed at the above address. The entrance to the garage is on
Chevy Chase. Follow Connecticut Avenue through Chevy N street between 17th and 18th streets. The garage is open
Chase, Van Ness/UDC, Cleveland Park, Woodley Park, from 6:30 a.m. until 11 p.m. You must validate your park-
across the Taft Bridge and down toward Dupont Circle. Do ing ticket at the Washington Center front desk in order to
not go under the tunnel; instead, turn left onto Q Street. obtain the $5 JHU discounted rate. This rate is in effect
Go three blocks to 17th Street and turn right, then go two after 5 p.m. only.
194
Directions and Maps
Parking on Saturdays: 1333 New Hampshire Avenue exit. Make a left onto 23rd Street and an immediate right
Directions and Maps

(202-298-7076) onto Clark Street. You will see the Hilton Crystal City on the
immediate right and a red, white, and blue vertical “Park”
The closest parking garage, located at 1333 New Hamp-
sign—that’s the building and garage. Pull into the parking
shire Avenue (entrance on 19th street), does not open until
garage under the building and take elevator to the 12th
9 a.m. on Saturdays ($10 flat rate) and is several blocks
floor, Suite 1200. The building’s street address is 2461 South
from the Washington Center. However, street parking is
Clark Street.
available nearby. Students are encouraged to arrive early
to find a parking space within close vicinity of the build-
Metro
ing. While metered parking is not enforced on weekends,
students should read all street signs to ensure that parking is Many Washington Center students travel to and from class
allowed. Johns Hopkins University will not be responsible on the Metro. The center is conveniently located near two
for parking violations. Metro stops: Dupont Circle (south exit) on the red line (two
blocks away) and Farragut West on the blue and orange lines
Crystal City Center (five blocks away).
From I-395 south: Follow 1-395 south and take the Crystal
City exit/Route 1 south (Jefferson Davis Highway) toward
Alexandria. Travel on Route 1 south to 23rd Street. Make
a left onto 23rd and an immediate right onto Clark Street.
You will see the Hilton Crystal City on the immediate right
and a red, white, and blue vertical “Park” sign—that’s the
building and garage. Pull into the parking garage under the
building and take elevator to the 12th floor, Suite 1200. The
building’s street address is 2461 South Clark Street.
From Route 66 east: Follow Route 66 east to Route 110 south
toward the Pentagon, Crystal City, and Alexandria. Passing
the Pentagon on the right, continue on Route 110 south
straight onto Route 1 south (Jefferson Davis Highway) to
Crystal City. Make a left onto 23rd Street and an immediate
right onto Clark Street. You will see the Hilton Crystal City
on the immediate right and a red, white, and blue vertical
“Park” sign—that’s the building and garage. Pull into the
parking garage under the building and take elevator to the
12th floor, Suite 1200. The building’s street address is 2461
South Clark Street.
From Route 270 east: Follow Route 270 east to 1-495 south
to Cabin John Bridge. Just past the bridge, take the George
Washington Parkway south. Travel on the G.W. Parkway
and take the National Airport exit, crossing the overpass
toward Crystal City. Take the Route 1 north Crystal City
195
Directions and Maps

Directions and Maps

ENGINEERING
FOR PROFESSIONALS
Facilities
95
22
83
695
BALTIMORE Homewood
70 Campus
895
100 95
175
Applied Dorsey Student
Physics Services Center
270 Laboratory
32
29
Montgomery 295
County 3
Campus
N
495 Washington
Center
WASHINGTON, D.C.
4
Crystal City
5
Center 301
95 4
235
Southern Maryland
Higher Education
Center
196
Directions and Maps
Directions and Maps

APPLIED PHYSICS LABORATORY
APL EDUCATION CENTER
11100 Johns Hopkins Road
Laurel, MD 20723-6099
443-778-6510 (Baltimore)
240-228-6510 (Washington, D.C.)
197
Directions and Maps

Directions and Maps
MONTGOMERY COUNTY CAMPUS

9601 Medical Center Drive
Rockville, MD 20850-3332
301-294-7070

355
d 118
R oa Johns Hopkins
n
n tow Montgomery County
r ma Campus
Ge
Da 97
rne 28
sto
wn
R
Georgia Avenue
oa 28
d
Shady Grove Road Vi

rs M
A
ill R
oa
355 d
Ro
c
536
v lle

Pike
198
Directions and Maps
Directions and Maps

DORSEY STUDENT SERVICES CENTER
Dorsey Business Park
6810 Deerpath Road, Suite 100
Elkridge, MD 21075
410-516-2300
800-548-3647
1
ute
5 Ro
9
rs tate
Inte
95
Ro
I-2
ut
e
10
0
Dorsey Student
Ro
ute Services Center y
17
5 wa
rk
Douglas Pa
n
I-95 Legum Drive gt o
hi n
Deerpath W as
Road ore
Rou ive lti m
1 te 1 Dr Ba
Do 03
ute rse ola
Ro yR C Ro
d c a- ut
e
Co 10
0
95
Ro
I-2
ute
17
5
199
Directions and Maps

Directions and Maps
HOMEWOOD CAMPUS
3400 N. Charles Street
Baltimore, MD 21218
410-516-8000
200
Directions and Maps
Directions and Maps

HOMEWOOD CAMPUS
San M
artin
Ctr
Visitor Parking
Hall
Mason
201
(Underground Garage)
Comp. Science
and Engineering
Charles Commons
Directions and Maps

Directions and Maps
SOUTHERN MARYLAND HIGHER EDUCATION CENTER

44219 Airport Road
Wildewood Technology Park
California, MD 20619
301-737-2500
245
d
oa
tR
or
rp
Ai
Pa
Southern Maryland tux
Higher Education en
Center tR
iv
er
235
Pax River
Naval Air
Station
Lexington Park
5
202
Directions and Maps
Directions and Maps

HIGHER EDUCATION and CONFERENCE CENTER@HEAT
1201 Technology Drive
Aberdeen, MD 21001
443-360-9200
0
S.4
U.
Ch 5
urc
hvi I-9
lle
d.
Rd
tR
.
MD
ber
22
Gil
Chesapeake Bay
HEAT Center
ABERDEEN
M
D
24
203
Directions and Maps

Directions and Maps
THE WASHINGTON, D.C. CENTER

1625 Massachusetts Avenue, N.W.
Washington, D.C. 20036
202-588-0590
19th Street
18th Street

Conn
ecticu
t Ave.
e.
Av
re
17th Street
16th Street
hi
ps
m
Ha
w
Ne
M P Street
Dupont
Circle Ma
ssa Washington, D.C.
chu
set
ts A Center
ve.
Conn
ecticu
N Street
t Ave.
P
Scott
Circle ⁄
204
Directions and Maps
Directions and Maps

CRYSTAL CITY CENTER
Century Center II Building, Suite 1200
2461 South Clark Street
Arlington, Virginia 22202
240-228-2912
50 27 395
237
27
SW
ah
110
ing
244
to
27
Pentagon
nB
lvd
27
kw
1
lP
244
395
ia
or
m
Me
ton
hing
120
George Was
Army and Navy
Country Club
gton Ridge Rd
S Crystal
23rd St. S
Dr
SC
ed
Crystal City
rlin
larkk St.
Dr.
Re
SA
er
Center
alt
SW
120
n Rd
Fort Scott
lingto
Pkwy
Park Ronald Reagan

Washington
Shir
ton Memorial
SA
National Airport
rlin 120
gt
120
on
M i l l Dr
shing
WG
leb
eR
Wa
d
ge
1
or
Ge
395
402
205
Index
Index
Academic and Registration Calendar, ii Data Communications and Networking
Academic Misconduct, 12 Concentration, 73
Academic Regulations, 9-12 Database Systems and Knowledge Management, 72
Academic Standing, 9, 10 Degrees, 2
Accreditation, 2 Master of Science, 2
Adding Courses, 9 Master of Engineering, 2
Administrative Staff, iv Directions and Maps to Campuses,
Admission Requirements, 6-8 Applied Physics Laboratory, 193, 196-197
Admission to Other Divisions of the University, 7 Crystal City Center, 195, 196, 205
Advisors, 9 Dorsey Student Services Center, 193, 196, 199
Index
Advisory Council, 175 Higher Education and Conference

Application Fee, 13 Center@HEAT, 194, 196, 203
Application Procedures, 7 Homewood, 193-194, 200-201
Applied Analysis, 20 Montgomery County Campus, 193, 196, 198
Applied and Computational Mathematics, 19-29 Washington DC Center, 194, 196, 204
Applied Biomedical Engineering, 30-37 Southern Maryland Higher
Applied Economics AAP Dual Program, 112 Education Center, 194, 196, 202
Applied Physics, 38-46 Disability Services, 14-15
Applied Physics Laboratory Education Dismissal, 10
Center, 16 Dorsey Student Services Center, 16
Computers, 16 Directions/Maps, 193, 196, 199
Directions/Maps, 193, 196-197 Dropping Courses, 9
Parking, 17
Auditors, 9 English Proficiency, 7
Electrical and Computer Engineering, 89-106
Bioinformatics, 47-58 Electronics and the Solid State Concentration, 92
Bioinformatics Concentration, 72 Enterprise and Web Computing Concentration, 73, 131
Biomedical Systems Engineering Concentration, 152 Environmental Engineering, 108
Biotechnology Concentration, 149 Environmental Engineering, Science
and Management, 107-122
Certificates Environmental Planning and Management, 109
Graduate, 2
Post-Master’s Study Candidate, 2 Facilities, 14-18
Change of Program or Concentration, 7 Faculty, 176-192
Chemical and Biomolecular Engineering, 59-65 Fees, 13
Cell and Molecular Biotechnology/ Application, 13
Biomaterials Concentration, 59 Graduation, 13
Civil Engineering, 66-69 Late Registration, 13
Computer Engineering, 91 Removal of Incomplete, 13
Computer Science, 70-88 Transfer Credit, 13
Computer Usage Policy, 12 Financial Aid, 13-14
Computers, 15-16
Copyright Violations, 12 Geophysics and Space Science, 39
Course Credit, 8 Geotechnical Engineering, 67
Course Enrollment Limits, 9 Grade Appeals, 12
Course Load, 9 Grade Reports, 11-12
Course Numbering System, 8 Grading System, 11
Course Requirements (see individual degree listings) Graduate Programs, 2
Course Schedule, 8 Graduation, 11
Crystal City Center, 18 Graduation Fee, 13
Directions/Maps, 195, 196, 205
Higher Educational and Conference
Center@HEAT, 18
206
Index
Homewood Campus, 16 Nanomaterials Concentration, 135

Book Store, Textbooks, 16 Nano/Microtechnology and Colloids and Interfaces
Directions/Maps, 193-194, 196, 200-201 Concentration, 60
Hopkins Student Union, 16 Nanotechnology Option, 135, 148-149
Libraries, 16 Networks Concentration, 124
Parking, 16 Network Engineering, 131
Security Services, 16 Non-Degree Students, 2
Honors, 11
Human-Computer Interaction Concentration, 131 Ocean Engineering, 67
Human-Computer Interaction and Visualization Online Education, 4
Concentration, 72 Getting Started, 4
Help Desk, 5
Incomplete Fee, 13 Registration, 5
Index
Incompletes, 11 Student Support Services, 5
Information Assurance, 123-128 What You Can Expect, 4
Information Assurance CS Concentration, 72 Operations Research Concentration, 20
Information Assurance ISE Concentration, 130 Organization Management Concentration, 164
Information Assurance SE Concentration, 154
Information Management Concentration, 130 Photonics Concentration, 91
Information Systems Engineering, 129-133 Photonics Option, 39, 91, 150
Information Systems Engineering Policy Statements, 170-172
IA Concentration, 130-131 Alcohol and Drug, 171
Information Systems Engineering Americans With Disabilities Act, 170
Software Engineering Concentration, 130 Campus Security Act Notice, 171-172
Information Systems Engineering SE Concentration, 130 Firearms, 171
Information Systems Engineering Nondiscrimination Policy, 170
Network Engineering Concentration, 131 Photograph and Film Rights, 172
Information Technology and Computation Privacy Rights, 170
Concentration, 20 Sexual Harassment, 171
International Credential Evaluation, 7 Probability and Statistics Concentration, 20
International Student Services, 14 Probation and Dismissal, 10
Inter-Site Links, 18 Programs by Location Chart, 3
Program Planning, 9
JCards, 14 Project Management Concentration, 164, 165
JH Student Assistance Program, 15
Quality Management, 165
Late Registration, 8
Leave of Absence, 10 Readmission, 7
Refund Policy, 13
Manufacturing Concentration, 142 Refund Schedule, 13
Master of Engineering, 2 Registration, 8-9
Master of Science, 2 Interdivisional, 9
Master’s Degree Candidate, 2 Late, 8
Materials and Condensed Matter Option, 39-40, 139 New Applicants, 8
Materials Science and Engineering, 134-138 Online Courses, 5, 8
Mechanics Concentration, 142 Web, 8
Mechanical Engineering, 141-147 Removal of Incomplete, 10
Modeling and Simulation SE Concentration, 155 RF and Microwave Engineering Concentration, 91
Montgomery County Campus, 17 Robotics and Controls Concentration, 143
Cafe, 17
Computers, 17 Second Degree, 10
Directions/Maps, 193, 196, 198 Signal Processing Concentration, 92
Library, 17 Simulation and Modeling Concentration, 21
Parking, 17 Software Engineering Concentration, 71, 130
Software SE Concentration, 155-156
207
Index
Southern Maryland Higher Education Center, 18

Special Students, 6
Special Topics, 73, 131
Structural Engineering, 66
Student Services, 14-18
Systems and Control Concentration, 85
Systems CS Concentration, 72
Systems Engineering, 151-162
Systems Engineering Concentration, 124, 130
Technical Innovation Management, 164

Technical Management, 163-168
Index
Telecommunications and Networking

Option, 70, 169
Telecommunications Option, 169
Textbooks, 9
Theory Concentration, 65
Time Limitation, 10
Transcripts, 14
Transfer Courses, 10-11
Transfer Credit Fee, 11
Trustees/Administration, 173-174
Tuition and Fees, 13
Veterans Benefits, 13-14

Violations of Academic Integrity, 12
Visa Status, 7
Washington DC Center, 18, 195, 196, 204

Weather, 15
208
Engineering
3400 North Charles Street
Baltimore, Maryland 21218
for Professionals
2012–2013 | Engineering for Professionals | Graduate Programs

Dorsey Center Washington, DC Center
Elkridge, MD Washington, DC Online @ EP
Montgomery County Campus

Rockville, MD
Higher Education
Homewood Campus
Baltimore, MD
Aberdeen, MD
Crystal City Center

Arlington, VA
Laurel, MD
Southern Maryland Higher

Education Center
California, MD
www.ep.jhu.edu
[email protected]
1.800.548.3647
Aberdeen • Baltimore • Crystal City • Elkridge • Laurel • Rockville • Southern Maryland • Washington, DC • Online
www.ep.jhu.edu 2012–2013 Graduate Programs
12-00596
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The Johns Hopkins University

WHITING SCHOOL OF ENGINEERING

2012–2013 | Engineering for Professionals | Graduate Programs

Montgomery County Campus

Crystal City Center

Southern Maryland Higher

12-00596 EP Catalog 2012-13.indd 1 4/3/12 8:18 AM

Academic Year 2012–2013

Summer 2012 Fall 2012 Spring 2013

Important Semester Dates:

First Day of Classes May 29 September 5 January 28

Last Day of Classes August 20 December 15 May 11

Graduation Application Deadlines August 1 December 1 May 1

Holidays July 4 November 21-25 March 18-24

Registration Deadlines Summer 2012 Fall 2012 Spring 2013

Registration Opens March 22 June 21 October 25, 2012

Registration Closes May 25 August 24 January 25

Final Day to Add 2nd class meeting September 18 February 3

Final Day to Add Online Courses June 6 September 13 February 3

Withdrawal/Audit Deadline 9th class meeting November 11 April 6

Tuition Payment Deadlines* Summer 2012 Fall 2012 Spring 2013

June 12 September 19 February 11

Whiting School Graduate Ceremony is Wednesday, May 22, 2013.

Engineering for Professionals

APL Education Center

Graduate Program Administration

Applied and Computational Mathematics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19

The Johns Hopkins Whiting School of

Graduate Pro­grams and applications for admission to the Master of Science in

Bioinformatics must be submitted directly to KSAS at www.

Certificates supporting documents and application fee to Engineering

Master of Engineering Non-Degree-Seeking Students

Joint Degree and Dual Program

Pro­grams Locations Online

See Directions and Maps on page 175.

Online Education at • Technical support that is provided 24/7

• A standard academic term

Engineering for • A full range of online student services including access to

Professionals advising, registration, and student records

Johns Hopkins Engineering for Professionals has been Getting Started

Admission programs offer a certificate of post-master’s study. This pro-

gram is intended to add depth and/or breadth in the disci-

which they have earned a grade of C or below. If a grade of student’s program:

516-7088 or jhu.edu/registrar. to report suspected violations of academic integrity to the

Tuition and Fees Refund Schedule

admitted to one of the schools of the University. He or she

In order to receive accommodations, it is important Computers

625.403 Statistical Methods and Data Analysis

625.411 Computational Methods 625.423 Introduction to Operations Research:

including first- and second-order linear differential equations.

625.411 Computational Methods 625.415 Nonlinear Optimization

625.485 Number Theory Prerequisites: Introductory probability theory and/or statistics

their respective examples and applications. Further attention

Applied Biomedical completed an equivalent graduate level course or can demon-

must be for advanced graduate credit, i.e., at the 600-, 700-,

Systems Biology Concentration 580.451/452 Cellular and Tissue Engineering

materials are becoming an increasingly important resource

revolutionize understanding of ionic channels. This course 580.641 Cellular Engineering

580.644 Neural Control of Movement and

580.651 Introduction to Nonlinear Dynamics in 580.683 High Performance Computing in Biology

Graduate Programs and applications for admission to the Master of Science in

Programs Locations Online

Systems Biology Concentration 580.451/452 Cellular and Tissue Engineering

580.644 Neural Control of Movement and

580.651 Introduction to Nonlinear Dynamics in 580.683 High Performance Computing in Biology