3.2 Organic Synthesis (Reaction Pathways) : Pupil Notes Learning Outcomes Questions & Answers
3.2 Organic Synthesis (Reaction Pathways) : Pupil Notes Learning Outcomes Questions & Answers
3.2 Organic Synthesis (Reaction Pathways) : Pupil Notes Learning Outcomes Questions & Answers
3.2
Organic
Synthesis
(Reaction Pathways)
Pupil Notes
Learning Outcomes
Questions
& Answers
KHS Chemistry Nov 2013 page 1 Systematic Organic Chemistry - Synthesis
Revised Advanced Higher Unit 3- Organic Chemistry
A synthesis combines a series of proposed steps to go from a defined set of reactants to a specified
product. You will be expected to devise synthetic routes with up to 3 steps from a given reactant to a final
product.
propane 2-bromopropane
propanone propan-2-ol
Web
There
Reaction are a series of animations that can be used in conjunction with these notes. They can
Pathways be found at http://www.new.chemistry-teaching-resources.com/Mechanisms.html
Functional Groups
The study of organic chemistry is made easier by knowledge of the various functional groups found in
molecules. Some of the main functional groups are shown in the table below.
Reactions learnt in the context of simple families can be applied to more complex molecules.
Intermolecular Attractions
Intermolecular attractions are largely determined by the extent of polarity within a molecule.
Non-polar molecules like butane rely on London Dispersion forces, while propanal and acetone will
have polar-polar attractions between molecules. Propanol will benefit from the stronger Hydrogen
bonds set up.
Boiling Points
Most organic molecules have a mainly hydrocarbon
portion to their structures, and as the hydrocarbon
chain increases in length the number of London
Dispersion forces will increase.
The elevated boiling points of the polar molecules reflect the extra energy needed to overcome the
stronger attractions between their molecules.
Solubility
The increasing influence of the hydrocarbon chain in polar molecules has an effect on solubility as well as
boiling points.
D
3. A compound, X, has the formula C6H12.
X must be
A a hydrocarbon
B an alkene
C a cycloalkane
7. Which of the following is most reactive as a
D hexene. nucleophile?
A Br2
4. In the homologous series of alkanols,
increase in chain length from CH3OH to B CH3I
C10H21OH is accompanied by C NH4+
A increased volatility and increased D NH3
solubility in water
B increased volatility and decreased 8. Hydrogen bonding occurs in
solubility in water A CH3I
C decreased volatility and decreased B CH3OH
solubility in water
C CH3OCH3
D decreased volatility and increased
D CH3CH2CHO.
solubility in water.
9. In the presence of bright light, hydrogen and
5. Which of the following is not caused by
chlorine react explosively. One step in the
hydrogen bonding?
reaction is shown below.
A The low density of ice compared to water
H2(g) + Cl(g) HCl(g) + H(g)
B The solubility of methoxymethane in
The enthalpy change for this step can be
water
represented as the bond enthalpy of
C The higher boiling point of methanol
A (HH) + (ClCl)
compared to ethane
B (HH) (ClCl)
D The higher melting point of hydrogen C (HH) + (HCl)
compared to helium D (HH) (HCl).
Web
Reaction
Pathways
Web
Reaction
Pathways
Alkanes tend to be extracted directly from the various fractions produced from the fractional
distillation of crude oil.
Other processes such as cracking ( to form alkenes) and reforming (to form ring
molecules such as benzene) also take place during the refining process. Neither of
these processes give us the specificity we would want in a Synthesis - too
many different molecules would be produced.
Propagation
A series of reactions between a free radical and a molecule Because each step makes another free readical, the reaction
keep the reaction going. is a chain reaction.
Termination
Cl CH3 CH3Cl
Substitution
KHS Chemistry Nov 2013 page 9 Systematic Organic Chemistry - Synthesis
Revised Advanced Higher Unit 3- Organic Chemistry
Web Web
Reaction Reaction
Pathways Pathways
Web
Reaction
Pathways
Web Web
Reaction Reaction
Pathways Pathways
Dehydration
There is no requirement to know the mechanism of this reaction. The concentrated H2SO4 can be
considered as a dehydrating agent in this reaction.
Elimination
Again, there is no requirement to know the mechanism of this reaction. However, be aware that the
solvent used is crucial. Elimination when solvent is alcohol, substitution if solvent is water.
Web
Reaction
Pathways
This is one of the main mechanisms that you will be expected to learn and a detailed description of the
mechanism can be found on the next page.
Web
Reaction
Pathways
This is one of the main mechanisms that you will be expected to learn and a detailed description of the
mechanism can be found on the next page.
H H H H
| |
| |
H C = C H H C = C H
Though water is polar,
electrons from the C=C
| electrons from the C=C
bond come out to form a H bond come out to form a
new bond with the H+ ion
Br new bond with the
Hydrogen atom.
The electrons of the HBr bond H H
| |
move onto the bromine to form a
bromide ion, Br.
H C C H
H H | H
| | H
:O
H C C H
H
| The carbocation is now attacked by
H :Br
a lone pair on the oxygen atom
The carbocation is then attacked by H H
| |
the lone pair of the bromide ion, a
neucleophile.
H C C H
H H | |
| |
H O H
H C C H |
| | H
H Br
A hydrogen ion is reformed (catalyst) and an alkanol is
A monohaloalkane is prduced and overall the reaction can be produced. Overall the reaction can be represented by the
represented by the equation: equation:
Markovnikov Rule
In the previous two addition reactions, there were the possibilities of two isomeric products forming
depending on which of the carbon atoms in the C = C was attacked first by the electrophile ( H+ ).
Web
Reaction
Pathways
To understand (and therefore predict) which isomer is the more likely product, you need to learn about the
Inductive Effect. In essence, when a positive charge forms on a carbon (carbocation intermediate) it can
be stabilised by drawing in negative charge from any alkyl groups attached to the carbon.
In forming two possible isomeric products, one of the carbocation intermediates will be more stable than
the other and that isomer will be the main product formed - sometimes, the only product formed.
Quick 'Rule of Thumb' - the hydrogen will always add to the carbon atom that
already has the most hydrogen atoms attached.
Alkynes will have a similar addition reaction but will be able to react with 2 moles of halogen.
Web
Reaction Electrophilic Addition From the normal equation there is no obvious
(cyclic ion intermediate)
Pathways
| |
and is also one of those you will be expected to
learn.
H C = C H
:Br
H
Br + As the non-polar Br
molecule approaches,
2
H C C H
| electrons from the C=C
bond induce polarity and H
B CH3 + Cl CH3Cl A
14. The major product in the reaction of HCl 17. OH + CO2 HCO3
with 2-methylpent-2-ene, C2H4 + Br2 C2H4Br+ + Br
Which substances act as electrophiles in
the above reactions?
A OH and Br2
A 2-chloro-2-methylpentane
B 3-chloro-2-methylpentane B OH and
C2H4
C 2,3-dichloro-2-methylpentane C CO2 and Br2
D 4-chloro-4-methylpentane.
D CO2 and C2H4
KHS Chemistry Nov 2013 page 15 Systematic Organic Chemistry - Synthesis
Revised Advanced Higher Unit 3- Organic Chemistry
HALOGENOALKANES ( Alkylhalides)
In Higher Chemistry the alkylhalides were not particularly important chemicals. In Advanced Higher,
however, the significance of halogenoalkanes (alkylhalides) cannot be overstressed. They can be a very
important step in many Synthesis Pathways.
Web
Reaction
Pathways
Introduction to Halogenoalkanes
Organic compounds containing halogen substituents are comparatively rare in the natural
world. Consequently, most have to be synthesised in laboratories. They are widely used in the
modern world.
For example, they are important in medicine, agriculture and in the manufacture of plastics. In
medicine, one of the first examples of their use was in 1847 by James Young Simpson of
Bathgate, who was the first to use chloroform (trichloromethane) as a general anaesthetic.
More recently, safer halogenoalkanes and halothanes have been devised for use as
anaesthetics.
Nucleophilic Substitution
H R R
| | |
RCX RCX RCX
| | |
H H R
One possible mechanism for nucleophilic substitution involves the formation of a carbonium ion after
the halogen atom leaves as a halide ion.
H R R
| | |
RC X RC X RC X
| | |
H H R
The other factor that can have a major effect, is the nature of the halogen present. Fluorine is
the most electronegative and will result in the most polar molecule.
However, the C F bond is also the strongest and will therefor be the hardest to break.
Overall, the most reactive halogenoalkanes are the iodo- and bromo-alkanes and they tend to
be used almost exclusively for nucleophilic substitution.
KHS Chemistry Nov 2013 page 17 Systematic Organic Chemistry - Synthesis
Revised Advanced Higher Unit 3- Organic Chemistry
(Sn1) (Sn2)
R' R'
R C + Br
Nu C + Br
R'' The polar CHal bond breaks approaches the
The nucleophile
R R''
heterolytically. electon deficient carbon
R' Attrigonal
A carbocation is
produced which can
this stage the molecule is
planar and R'
The intermediate is a
trigonal bipyramid
| either side is equally likely.
be attacked by any
nucleophilic group
nucleophilic attack from shape
|
C Nu C Br
R R'' R R''
Nu Nu : As the nucleophiles' electron pair moves in, the electons of
the CBr bond move onto the bromine
If R , R' and R'' are all different (assymetric carbon), then Even if R , R' and R'' are all different (assymetric carbon),
a mixture of optical isomers will be produced. only one possible isomer can be produced.
HO alcohols HO alcohols
: :
: :
(NaOH(aq) or other aqueous solutions) (NaOH(aq) or other aqueous solutions)
RO ethers RO ethers
: :
: :
(Alkoxide ions, from Na/alcohols) (Alkoxide ions, from Na/alcohols)
A variety of products can be made by this reaction but over- A variety of products can be made by this reaction but over-
all the reaction can be represented by the equation: all the reaction can be represented by the equation:
Substitution Substitution
The first step is the rate determining step and, since it only The rate determining step involves both chemicalss so the
involves one substance, the reaction is first order reaction is second order
Sn1 or Sn2 ? Can depend on the polarity of the CHal bond. Can depend on the polarity of the solvent used. Can depend on the
size of the R , R' and R'' groups. No easy answer. Just need to be aware of the the two possibilities.
Steric Hindrance
Steric Hindrance refers to the effect that larger groups can have on the formation of a bond to a new
group.
Traditionally, the 'easiest' reagent given for this reaction is NaOH(aq) and it is perfectly acceptable to
assume that the hydroxide ion is the attacking nucleophile:
In reality, just about any aqueous solution can be used as the attacking nucleophile is actually a water
molecule, but the final step requires the elimination of a H+ and the hydroxide ion can play an important
part here.
What is much more important is that careful attention is paid to the solvent used as hydroxides dissolved
in ethanol, e.g. NaOH(ethanol) , can lead to an Elimination reaction instead
Traditionally, there would appear to be two different reagents given for this reaction but, in reality, it is
the same reagent both times. The key to this reaction is the production of an alkoxide ion ( R O )
which can be conveniently made by reacting an alkali metal, e.g. Na, with the equivalent alcohol
( R OH ).
Normally, it will be enough to know the reaction above but be aware that amines can themselves act as
the nucleophile which would lead to the production of secondary and tertiary amines.
Having produced a nitrile group, the next step is usually hydrolysis, which results in the production of an
acid (carboxyl) group.
Importance of Alkylhalides
As mentioned earlier, the importance of alkylhalides, and the nucleophilic substitution reaction in
particular, cannot be stressed enough and they will feature in many of the reaction pathways met at
Advanced Higher.
Web
Reaction
Pathways
ALCOHOLS
One of the most important reactions met in Higher Chemistry was the oxidation of alcohols and this
remains a very useful step in many Synthesis Pathways. The production of an alcohol from alkylhalide is
new but was covered in the previous section.
Absolutely new is the use of hydrides (H) to reduce aldehydes and ketones back to the corresponding
alcohol.
Cr2O72- / H+
LiAlH4
Cr2O72- / H+
LiAlH4
Hydrides are compounds containing the H ion. Again, there is no need to know how this reagent works
but it is not a complicated reaction:
ALDEHYDES
H NO2 H NO2
O N N
+ H2N N
H3C C + H2O
C H H3C C
H2 NO2 C H NO2
H2
KETONES
Important Ketones
Due to their susceptibility to oxidation, aldehydes are fairly rare in the natural world wheras ketones are
found everywhere including many steroids and medicinal drugs.
Oxidation of an aldehyde
O K2Cr2O7 O
CH3CH2CH2CH2CH2CH CH3CH2CH2CH2CH2COH
H+
hexanal hexanoic acid
Hydrolysis of a nitrile (after nucleophilic substitution of an alkylhalide) - grows the carbon chain
Hydrolysis of an ester
O H+ / H2O O
CH3CH2C OCH2CH3 CH3CH2COH CH3CH2OH
ethylpropanoate propanoic acid
O O O O
H3C OH OH OH OH
OH
ethanoic acid butanoic acid hexanoic acid lactic acid
responsible for responsible for responsible for responsible for
the pungent smell the rancid odour the odour the taste of
of vinegar of sour butter of smelly feet sour milk
O
OH HO
O
O NH2
HO HO O
O
acetylsalicylic acid p-aminosalicylic acid isotretinoin
Aspirin: a widely used in the treatment of used in the treatment of
used analgesic tuberculosis acne
In organic chemistry, the main reaction of carboxylic acids remains esterification ( a condensation
reaction in which an acid and an alcohol join together with the elimination of a small stable molecule,
usually water). An ester can be considered as a derivative of an acid.
O c. H2SO4 O
C CH3CH2OH C HOH
H3C OH H3C OCH2CH3
ethylethanoate
O c. H2SO4 O
C CH3OH C HOH
OH OCH3
methylbenzoate
Two less familiar condensation reactions lead to unfamiliar products - an acid chloride and an anhydride.
PCl3 or
+ PCl5 or + inorganic products
SOCl2
+ H2O
Unusually, the significance of these derivatives is less as products and more as alternative reactants. All
of these derivatives, including esters and amides, are themselves capable of doing the same condensation
reactions as the acid molecules themselves. However, they can be more reactive which can make them
the preferred option in many synthesis pathways as alternatives to acids - particularly the acid chlorides.
'small' molecule
produced by NH3 H2O ROH RCOOH HCl
condensation
Properties
The properties of acids are strongly influenced by the ability of the
molecules to set up hydrogen bonding. This can be seen clearly by
comparing molecules of similar size and mass.
C alcohol A C6H5OH
D aldehyde. B C6H5NH2
C C6H5COOH
36. Which of the following is least acidic? D H2NCH2COOH
C
B
D C
D
37. Two isomeric esters, X and Y, have the
molecular formula C4H8O2. Ester X on 40. Which of the following will react with dilute
hydrolysis with sodium hydroxide solution sodium hydroxide solution?
gives CH3CH2COONa, and ester Y on A CH3CHOHCH3
similar treatment gives CH3CH2OH. B CH3CH=CH2
AROMATICS
Aromatics are an enormous group of chemicals based on the benzene ring. The ring
gives distinctive properties to any molecule that contains it.
Despite the unsaturated nature of a
Web
Reaction
Elecrophilic Substitution
Though only four electrophilic substitution reactions need to be learnt in detail for Advanced Higher,
there are a wide variety of molecules that can be made in this way.
Electrophilic Substitution
This is the main reaction of benzene rings. Though they have even more electrons than the C = C bond
in alkenes, they resist addition because the loss of the delocalised ring is too destabilising.
H An AlCl4 ion is
also formed
An AlCl4 ion is
also formed
H C Cl : AlCl3 Web Cl Cl : AlCl3
H
Reaction
Pathways
CH3
Cl electrons move from the
electrons move from the ring to form a new bond with
ring to form a new bond with the chlorine ion, Cl+.
the methyl ion.
H CH3 H Cl
The positive charge is shared The positive charge is shared
over the whole ring. over the whole ring.
Electrons move from the CH Electrons move from the CH
bond, a H+ ion is eliminated. bond, a H+ ion is eliminated.
CH3 Cl
Overall, an alkyl group takes the place Overall, a halogen atom takes the place
of a hydrogen atom, Substitution. of a hydrogen atom, Substitution.
The H+ ion reacts with the AlCl4 to reform The H+ ion reacts with the AlCl4 to reform
AlCl3 and a molecule of HCl. AlCl3 and a molecule of HCl.
Overall, a nitro group takes the place of O the benzene ring attaches itself to the
a hydrogen atom, Substitution. oxygen ion.
Overall, a HSO3 group takes the place
of a hydrogen atom, Substitution.
Common Aromatics
Most of the aromatics you will come across are substituted benzene rings and can be named accordingly
with the substituent's name preceding benzene - chlorobenzene. Alternatively the label phenyl can be used
for the benzene ring followed by the substituent - phenylchloride.
Conjugated Systems
In general, you can assume that a functional group attached to a benzene ring will continue to behave as
normal. There are, however, two exceptions that you will be expected to be aware of.
Alcohols all possess a very polar O H bond, but have little to no ability to form H+ ions (acidity) due
to the instability of the alkoxide ion that would also have to form. Phenol is an exception. The molecular
orbital of the benzene ring can extend to form a conjugated system with the orbitals containing the lone
pairs on the oxygen. This draws electrons away from the oxygen to be shared between 7 atoms ( 1 oxygen
plus 6 carbons).
However, amines rely on the attraction of their lone pair for H+ ions
to give them their basic properties.
NH3 + H 2O NH4+ + OH
RNH2 + HCl RNH3+ + Cl
A X Y Z
B Y Z X C
C Z X Y
D X Z Y
D
44.
3.2.16 The lower alcohols are miscible with water but as their chain
length increases their solubility in water decreases.
3.2.22 Ethers have the general formula Rl-O-R2 where Rl and R2 are alkyl
groups.
3.2.24 Due to the lack of hydrogen bonding, ethers have lower boiling
points than the corresponding isomeric alcohols.
3.2.25 Ether molecules can hydrogen bond with water molecules thus
explaining the solubility in water of some ethers of low relative
formula mass.
3.2.26 Ethers are highly flammable and on exposure to air may form
explosive peroxides.
3.2.28 Ethers are useful solvents for many organic compounds due to
( i) relative stability with respect to oxidation and reduction
(ii) polarity
3.2.35 Aldehydes are generally more reactive than ketones because the
presence of two alkyl groups in ketones hinders nucleophilic attack
and reduces the partial positive charge on the carbonyl carbon
atom.
3.2.37 Carboxylic acid molecules also form hydrogen bonds with water
molecules thus explaining the appreciable solubility of the lower
carboxylic acids in water. As the chain length increases water
solubility decreases.
3.2.38 Carboxylic acids are weak acids. Their slight dissociation in water
can be explained by the stability of the carboxylate ion caused by
electron delocalisation.
Amines
3.2.41 Amines are named according to IUPAC rules.
3.2.43 Primary and secondary amines, but not tertiary amines, associate by
hydrogen bonding and as a result have higher boiling points than
isomeric tertiary amines and alkanes with comparable relative
formula masses.
3.2.44 Amine molecules can hydrogen bond with water molecules thus
explaining the appreciable solubility of the lower amines in water.
3.2.45 The nitrogen atom in amines has a lone pair of electrons which can
accept a proton from water, producing hydroxide ions. Amines are
weak bases.
3.2.46 Amines react with aqueous mineral or carboxylic acids to form salts.
Aromatics
3.2.47 Bonding in benzene can be described in terms of sp2 hybridisation,
sigma and pi bonds and electron delocalisation.
Exam Practice
1.
2.
4.
6.
8.
10.
12.
14.
1. D 2. B 3. A 4. C 5. D 6. C 7. D 8. B 9. D
Page 15:
Page 24:
Page 30:
Page 35:
Page 40:
2.
3.
4.
5.
6.
7.
8.
10
11.
12
13.
14.