Genes MLSB Staphylococcus PDF
Genes MLSB Staphylococcus PDF
Genes MLSB Staphylococcus PDF
10621066
0066-4804/99/$04.0010
Copyright 1999, American Society for Microbiology. All Rights Reserved.
The relative frequency of 10 determinants of resistance to macrolides, lincosamides, and streptogramins was
investigated by PCR in a series of 294 macrolide-, lincosamide-, and/or streptogramin-resistant clinical isolates
of Staphylococcus aureus and coagulase-negative staphylococci isolated in 1995 from 32 French hospitals.
Resistance was mainly due to the presence of ermA or ermC genes, which were detected in 259 strains (88%),
in particular those resistant to methicillin (78% of the strains). Macrolide resistance due to msrA was more
prevalent in coagulase-negative staphylococci (14.6%) than in S. aureus (2.1%). Genes related to linA/linA* and
conferring resistance to lincomycin were detected in one strain of S. aureus and seven strains of coagulasenegative staphylococci. Resistance to pristinamycin and quinupristin-dalfopristin was phenotypically detected
in 10 strains of S. aureus and in three strains of coagulase-negative staphylococci; it was always associated with
resistance to type A streptogramins encoded by vat or vatB genes and occurred in association with erm genes.
The vga gene conferring decreased susceptibility to type A streptogramins was present alone in three strains
of coagulase-negative staphylococci and in combination with erm genes in 10 strains of coagulase-negative
staphylococci. A combination of vga-vgb-vat and ermA genes was found in a single strain of S. epidermidis.
Genes related to vat and vgb have been described in S. cohnii
subsp. cohnii and were named vatC and vgbB, respectively (3).
The present investigation was undertaken to study the relative frequency of each MLS resistance determinant, by PCR, in
a series of 294 macrolide, lincosamide, and/or streptograminresistant clinical isolates of S. aureus and coagulase-negative
staphylococci obtained from 32 French hospitals.
Macrolide, lincosamide, and streptogramin (MLS) antibiotics are widely used in the treatment of staphylococcal infections. Resistance to macrolides (such as erythromycin) and
lincosamides (such as lincomycin and clindamycin) is prevalent
among staphylococci (9, 13, 28, 29). Resistance against streptogramins, which consist of two components, streptogramin
types A and B (e.g., pristinamycin IIA and IA, dalfopristin and
quinupristin) with synergistic activity, remains infrequent (23).
A number of genes conferring resistance to this group of antibiotics via a variety of mechanisms have been identified in
staphylococci. Three related determinants, ermA, ermB, and
ermC, have been identified which confer resistance to MLS
type B (MLSB) by target site alteration of the ribosome (11, 21,
29). This resistance is either inducible (strains are resistant to
14- and 15-membered ring macrolides and susceptible to 16membered ring MLSB) or constitutive (resistance includes 16membered ring MLSB). The msrA gene, first identified in
Staphylococcus epidermidis, confers the so-called MS phenotype (inducible resistance to 14- and 15-membered ring macrolides and resistance to streptogramin type B after induction
with erythromycin) by efflux (27); an msrA-related gene, msrB,
has been described in S. xylosus (25). The linA gene in S. haemolyticus and linA9 in S. aureus, which have a high degree of
homology, confer resistance to lincosamides only (8). Resistance to type A streptogramin antibiotics in staphylococci can
be due to two mechanisms: (i) the vga and vgaB genes encode
related ATP-binding proteins probably involved in active efflux
of the A compounds (2, 4) and (ii) the vat and vatB genes
encode related acetyltransferases (1). The vgb gene encoding a
lactonase inactivates the type B streptogramin antibiotics (5).
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TABLE 1. Sequences, primers, and PCR conditions used to detect MLS resistance determinants
Target
gene
ermAb
GenBank
accession
no.
K02987 59-GTTCAAGAAC
59-GGATCAGGAA
ermB
U35228 59-CCGTTTACGA
59-GAATCGAGAC
X54338 59-GCTAATATTG
ermCb
59-GGATCAGGAA
msrA
X52085 59-GGCACAATAA
59-AAGTTATATC
msrB
M91802 59-TATGATATCC
59-AAGTTATATC
linA/linA9
M14039 59-GGTGGCTGGG
59-GCTTCTTTTG
vga
M90056 59-CCAGAACTGC
59-AAGTTCGTTT
vgb
U19459 59-ACTAACCAAG
59-TTATTGCTTG
vat
L07778 59-CAATGACCAT
59-CTTCAGCATT
vatB
M20129 59-CCCTGATCCA
59-CTAAATCAGA
gyrA
59-AGTACATCGT
59-ATCACGTAAC
16S-23S spacer
59-TTGTACACAC
region
59-GGTACCTTAG
a
b
Primer sequences
AATCAATACA GAG-39
AAGGACATTT TAC-39
AATTGGAACA GGTAAAGGGC-39
TTGAGTGTGC-39
TTTAAATCGT CAATTCC-39
AAGGACATTT TAC-39
GAGTGTTTAA AGG-39
ATGAATAGAT TGTCCTGTT-39
ATAATAATTA TCCAATC-39
ATGAATAGAT TGTCCTGTT-39
GGGTAGATGT ATTAACTGG-39
AAATACATGG TATTTTTCGA TC-39
TATTAGCAGA TGAA-39
CTCTTTTCGA CG-39
ATACAGGACC-39
TCAGCCTTCC-39
GGACCTGATC-39
TCGATATCTC C-39
AATAGCATAT ATCC-39 (vatB-1)
GCTACAAAGT G-39 (vatB-2)
CGTATACTAT ATGG-39
AGTTCAAGTGTG-39
CGCCCGTCA-39
ATGTTTCAGTTC-39
421
359
572
940
595
323
619
602
280
470
734
492
nt, nucleotide.
Genes detected by duplex PCR with a common primer oligonucleotide.
ing, Belgium). PCR was carried out on the 294 staphylococcal strains displaying
resistance to at least one of the MLS antibiotics, as well as on control strains for
each resistance determinant (Table 1), the reference S. aureus strains ATCC
25923 and ATCC 29213, and 20 strains susceptible to MLS (10 strains of S. aureus and 10 coagulase-negative staphylococcus strains) randomly selected from
the bacterial collection described above. In the absence of the reference strain
harboring the vatB gene, which is protected by a patent, a surrogate template for
vatB amplification was designed on a pCRII vector (Invitrogene, Leek, The
Netherlands) in Escherichia coli. This plasmid (pLUG247) consists of the sequence of the upstream and downstream primers separated by the tetracycline
resistance determinant tet(M). The PCR assays run on a GeneAmp PCR System
9600 (Perkin-Elmer, Saint-Quentin en Yvelines, France) were initialized by a
denaturation step (10 min at 94C) and finished with a final extension step
(10 min at 72C). Cycles were run as described in Table 1. DNA amplification of
gyrA for S. aureus (17) or the 16S-23S spacer region of the rDNA operon for
other species (18) was used to test the quality of the DNA extraction and for the
absence of PCR inhibitors. PCR products were analyzed by electrophoresis
through 1% agarose gels (Sigma, Saint Quentin Fallavier, France).
RESULTS
MLS resistance phenotypes. A total of 294 strains including
144 S. aureus and 150 coagulase-negative staphylococci exhibited resistance to at least one of the MLS antibiotics. Resistance to oxacillin was detected in 103 of the 144 S. aureus
strains and in 100 of the 143 coagulase-negative staphylococcus
strains. For MLSB-resistant staphylococci, a single MLS-inducible phenotype was demonstrated in 46 S. aureus strains and
43 coagulase-negative staphylococcus strains, and constitutive MLSB resistance was found in 82 S. aureus strains and
56 coagulase-negative staphylococcus strains (Table 2). The
inducible phenotype was predominant in methicillin-susceptible S. aureus (MSSA, 82%), and the constitutive phenotype
was predominant in methicillin-resistant S. aureus (MRSA,
83%). Resistance to MLS antibiotics, including pristinamycin
and quinupristin-dalfopristin, was detected in 10 S. aureus strains
and 3 coagulase-negative staphylococcus strains; these 13
strains were also resistant to methicillin. Resistance to erythromycin but not to other MLS antibiotics was observed in 3
strains of S. aureus and 17 strains of coagulase-negative staphylococci. Other resistance phenotypes were found in 3 strains
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LINA ET AL.
Straina (no.)
ermA 1 ermB
ermA 1 ermC
ermB
ermC
S. aureus (144)
MLSB inducible
MSSA
MRSA
MLSB constitutive
MSSA
MRSA
Total
MSSA
MRSA
91 (63.2)
14 (9.8)
5 (3.5)
9 (6.3)
77 (53.5)
3 (2.1)
74 (51.4)
1 (0.7)
0
0
0
1
1
0
36 (25.0)
32 (22.2)
26 (18.2)
6 (4.2)
4 (2.8)
3 (2.1)
1 (0.7)
8 (5.6)
83 (57.6)
1 (0.7)
0
29 (20.1)
7 (4.9)
27 (18.0)
10 (6.6)
1 (0.7)
9 (6.0)
17 (11.3)
1 (0.7)
16 (10.7)
1 (0.7)
0
0
0
1
1
0
66 (44.0)
31 (20.7)
14 (9.3)
17 (11.3)
35 (23.3)
7 (4.7)
28 (18.7)
1 (0.7)
0
0
0
1 (0.7)
0
1 (0.7)
3 (2.0)
1 (0.7)
1 (0.7)
0
2 (1.3)
0
2 (1.3)
1 (0.7)
1 (0.7)
1 (0.7)
0
0
0
0
2 (1.3)
25 (16.7)
1 (0.7)
0
21 (14.0)
45 (30.0)
0
1 (0.7)
1 (0.7)
2 (1.3)
1 (0.7)
a
b
Other genotypeb
ermB 1 ermC
ermA
16 (11.1)
51 (34.0)
TABLE 3. Distribution of msrA, linA/linA9, vga, vgb, vat, and vatB resistance genes among staphylococcal isolatesa
Gene
msrA
S. aureus (n 5 144)
No. (%)
3 (2.1)
Resistance phenotype
MSSA or MRSA, M
Resistance phenotype
17 (11.3)
MSCNS, M
MRCNS, M
MRCNS, M
MSCNS, M
MSCNS, M
MSCNS, MLS inducible
MRCNS, MLS inducible
MRCNS, MLS constitutive
MSCNS, MLS inducible
MRCNS, L
MRCNS, M, L
MRCNS, M, L
MSCNS, L
MRCNS, MS inducible, L constitutive
MRCNS, MS inducible, L constitutive
MRCNS, SgA
MRCNS, SgA, L
MRCNS, MLS constitutive, SgA
MRCNS, MLS constitutive, SgA
MSCNS, MLS inducible
MRCNS, MLS constitutive, SgA
MRCNS, MLS constitutive, SgA, Pr, QD
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
S.
epidermidis (2)
epidermidis (1)
haemolyticus (10)
saprophyticus (2)
hominis (2)
hominis (1)
haemolyticus (2)
haemolyticus (1)
hominis (1)
epidermidis (2)
epidermidis (1)
haemolyticus (1)
hominis (1)
epidermidis (1)
haemolyticus (1)
epidermidis (2)
haemolyticus (1)
epidermidis (6)
haemolyticus (1)
epidermidis (1)
epidermidis (1)
epidermidis (1)
S.
S.
S.
S.
S.
S.
epidermidis (2)
sciuri (3)
sciuri (1)
saprophyticus (1)
warneri (1)
warneri (1)
msrA 1 ermA
3 (2.0)
msrA 1 ermC
2 (1.3)
linA/linA9
linA/linA9 1 msrA
2 (1.3)
2 (1.3)
linA/linA9 1 ermA
linA/linA9 1 ermC
linA/linA9 1 ermB 1 ermC
vga
1 (0.7)
1 (0.7)
1 (0.7)
1 (0.7)
3 (2.0)
vga 1 ermA
8 (5.3)
1 (0.7)
1 (0.7)
vatB 1 ermC
No resistance gene
10 (7.6)
1 (0.7)
1 (0.7)
2 (1.3)
4 (2.7)
1 (0.7)
1 (0.7)
1 (0.7)
Species (no.)
a
Abbreviations: M, macrolides; MSCNS, methicillin-susceptible coagulase-negative staphylococci; MRCNS, methicillin-resistant coagulase-negative staphylococci;
L, lincosamides; MS, macrolides-streptogramin B; SgA, streptogramin A; Pr, pristinamycin; and QD, quinupristin-dalfopristin.
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LINA ET AL.
duced, the bactericidal efficacy of pristinamycin and quinupristin-dalfopristin remains to be evaluated as well as its clinical
efficacy. However, at present, these promising molecules (pristinamycin for oral use and quinupristin-dalfopristin for intravenous use) are potentially fully active in a large proportion of
cases.
ACKNOWLEDGMENTS
We are grateful to Chantal Nervi, Martine Rougier, Annie Martra,
and Yvonne Benito for technical assistance and to Patrice Courvalin
for providing reference strains.
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