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2008
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Since the discovery of NMR coupling constants across hydrogen bonds A H···B containing nuclei with spin =2, such as A, B= F, N, it has been established that these NMR parameters can not only be used to detect hydrogen bridges in biomolecules but also to determine the geometries of strong hydrogen bonds in solution. It has been shown experimentally and by ab initio calculations that scalar two-bond coupling constants JAB attain maximum values when the A···B distances are at a minimum. Whereas the maximum values have been established for FHFand NHF hydrogen bonds, the corresponding maxima are still unknown in the case of NHN bridges. To date, only J15N15N values less than 11 Hz have been detected in nucleic acid base pairs, protonated sponges, and sixand seven-membered Hchelates. In contrast, DFT calculations gave maximum coupling constants JNN = 25 Hz, [5d] corresponding to the shortest possible N···N distance of about 2.5 5. More reliable high-level coupled-cluster EOM calculations ...
Angewandte Chemie International Edition, 2008
ab initio calculations; coupling constants; hydrogen bonds; NMR spectroscopy; tautomerism Since the discovery of NMR coupling constants across hydrogen bonds A-H···B containing nuclei with spin 1 / 2 , such as A, B = 19 F, 15 N, [ 1 -3 ] it has been established that these NMR parameters can not only be used to detect hydrogen bridges in biomolecules but also to determine the geometries of strong hydrogen bonds in solution. [ 5 ] It has been shown experimentally and by ab initio calculations that scalar two-bond coupling constants 2 J AB attain maximum values when the A···B distances are at a minimum. Whereas the maximum values have been established for FHF and NHF hydrogen bonds, the corresponding maxima are still unknown in the case of NHN bridges. To date, only 2 J15 N 15 N values less than 11 Hz have been detected in nucleic acid base pairs, protonated sponges, [ 6 , 7 ] and six- and seven-membered H-chelates. In contrast, DFT calculations gave maximum coupling constants 2 J NN = 25 Hz,[ 5d ] corresponding to the shortest possible N···N distance of about
Angewandte Chemie International Edition, 2009
Hydrogen bonds (H-bonds) are important and ubiquitous interactions in chemistry and biology. They are a key element in proteins and nucleic acids for stabilizing the three-dimensional fold and are thus important for the functionality. The presence of an H-bond can be indirectly deduced from the local geometry as obtained from X-ray or NMR methods, and a variety of NMR parameters depend also on hydrogen bonding (e.g. chemical shifts induced by H-bonds or 2 H quadrupolar coupling constants). Direct evidence of hydrogen bonding, however, is provided by the presence of an H-bond-mediated scalar coupling. Experiments that directly measure J couplings across NÀH···N and NÀ H···O = C bonds in nucleic acids and proteins, respectively, have been introduced for solution-state NMR spectroscopy and have received great interest. Such experiments allow the direct identification of the donor and acceptor side of each Hbond, as well as the determination of the size of the coupling-which is a very sensitive probe of the geometry around an H-bond.
Progress in Nuclear Magnetic Resonance Spectroscopy, 2004
Journal of the …, 2000
We describe the first direct observation of NsH‚‚‚OdC hydrogen bonding in nucleic acids via the four-bond 4h J NiNj coupling within an N1 i sH1 i ‚‚‚O6 j dC6 j-N1 j segment of a G‚G‚G‚G tetrad. The experiment, two-dimensional (2D) HN(N)-TOCSY, makes use of band-selective 15 N isotropic mixing to transfer magnetization exclusively via the 4h J NN couplings to yield correlations between N1H i (ω 2) and N1 j (ω 1) across the hydrogen-bonded segment. In a complementary experiment, 2D cross-polarization (CP)-H(N)CO-(NN)-TOCSY, employing band-selective heteronuclear 15 N-13 C cross-polarization sequences on either side of the 15 N-15 N TOCSY period, correlations are obtained between N1H i (ω 2) and C6 j (ω 1) nuclei across the hydrogen bond. The symmetric A 2 X 2-type coupling topology of the four-spin nitrogen system in the G‚G‚G‚G tetrad permits accurate measurement of these couplings by a new procedure that fits the experimental data with known analytical isotropic mixing transfer functions. The techniques are demonstrated on a G‚G‚G‚G tetrad formed within a novel dimeric quadruplex fold of a uniformly 13 C/ 15 N-labeled d(G-G-G-T-T-C-A-G-G) DNA sequence. The value of the 4h J NN coupling constant for this system is estimated to be 0.136 (0.021 Hz.
Journal of the American Chemical Society, 2000
We describe the first direct observation of NsH‚‚‚OdC hydrogen bonding in nucleic acids via the four-bond 4h J NiNj coupling within an N1 i sH1 i ‚‚‚O6 j dC6 j-N1 j segment of a G‚G‚G‚G tetrad. The experiment, two-dimensional (2D) HN(N)-TOCSY, makes use of band-selective 15 N isotropic mixing to transfer magnetization exclusively via the 4h J NN couplings to yield correlations between N1H i (ω 2) and N1 j (ω 1) across the hydrogen-bonded segment. In a complementary experiment, 2D cross-polarization (CP)-H(N)CO-(NN)-TOCSY, employing band-selective heteronuclear 15 N-13 C cross-polarization sequences on either side of the 15 N-15 N TOCSY period, correlations are obtained between N1H i (ω 2) and C6 j (ω 1) nuclei across the hydrogen bond. The symmetric A 2 X 2-type coupling topology of the four-spin nitrogen system in the G‚G‚G‚G tetrad permits accurate measurement of these couplings by a new procedure that fits the experimental data with known analytical isotropic mixing transfer functions. The techniques are demonstrated on a G‚G‚G‚G tetrad formed within a novel dimeric quadruplex fold of a uniformly 13 C/ 15 N-labeled d(G-G-G-T-T-C-A-G-G) DNA sequence. The value of the 4h J NN coupling constant for this system is estimated to be 0.136 (0.021 Hz.
Magnetic Resonance in Chemistry, 2001
S18-S29 1 H/ 15 N NMR chemical shielding, dipolar 15 N, 2 H coupling and hydrogen bond geometry correlations in a novel series of hydrogen-bonded acid-base complexes of collidine with carboxylic acids
Monatshefte fuer Chemie/Chemical Monthly, 1999
Recent improvements in NMR methodology have signi®cantly increased the scope of hydrogen bond related problems that can be now addressed by solution NMR methods. A growing number of applications are exploiting these NMR techniques to study complex molecular systems and elicit otherwise inaccessible information on hydrogen bonding in aqueous solution.
Proceedings of the National Academy of Sciences, 1998
This paper describes the NMR observation of 15 NO 15 N and 1 HO 15 N scalar couplings across the hydrogen bonds in Watson-Crick base pairs in a DNA duplex, h J NN and h J HN . These couplings represent new parameters of interest for both structural studies of DNA and theoretical investigations into the nature of the hydrogen bonds. Two dimensional [ 15 N, 1 H]-transverse relaxation-optimized spectroscopy (TROSY) with a 15 N-labeled 14-mer DNA duplex was used to measure h J NN , which is in the range 6-7 Hz, and the twodimensional h J NN -correlation-[ 15 N, 1 H]-TROSY experiment was used to correlate the chemical shifts of pairs of hydrogen bond-related 15 N spins and to observe, for the first time, h J HN scalar couplings, with values in the range 2-3.6 Hz. TROSYbased studies of scalar couplings across hydrogen bonds should be applicable for large molecular sizes, including protein-bound nucleic acids.
2007
The 1 H, 15 N, and 13 C NMR spectra of partially 15 N labeled bis-(2-pyridyl)-acetonitrile (1) dissolved in CDCl 3 and CD 2 Cl 2 have been measured in order to characterize its intramolecular NHN hydrogen bond. A fast proton tautomerism renders the molecule symmetric within the NMR timescale which complicates the determination of the scalar coupling constant 2h J( 15 N, 15 N) " J(N,N) across the intramolecular NHN-hydrogen bond. It is shown that an isotopic labeling scheme where experiments are performed on a mixture of 1-14 N 14 N, 1-14 N 15 N, and 1-15 N 15 N facilitates the direct determination of J(N,N) from the non-decoupled 15 N NMR spectra as well as the indirect detection via 13 C NMR. Thus, a value of J(N,N) = 10.3 ± 0.5 Hz is obtained, which is similar to the corresponding value of 10.6 ± 0.5 Hz found previously for the seven-membered H-chelate N,N 0 -diphenyl-6-aminopentafulvene-1-aldimine-15 N 2 (2). By contrast, the crystallographic N. . .N distances and hydrogen bond angles of both compounds are very different, i.e. 2.65 Å and about 140°in the case of 1 and 2.79 Å and about 160°in the case of 2. However, the sum of the calculated NH and H. . .N distances is the same for both compounds, i.e. 2.75 Å . This finding supports the previous proposition that the values of J(A,B) of a hydrogen bond AHB are correlated with the sum of the two hydrogen -heavy atom distances rather than with the heavy atom distance.
Chemical Physics Letters, 2005
The concept of resonance-assisted hydrogen bonds (RAHBs) is one of the most frequently used concepts in structural chemistry. Computed equation-of-motion coupled cluster singles and doubles (EOM-CCSD) O-O and N-N coupling constants through intramolecular X-H-X hydrogen bonds ( 2h J X-X ) and MP2 1 H chemical shifts of the X-H-X protons have been used to investigate RAHBs in model saturated and unsaturated systems. The computed results suggest that the NMR properties of these molecules do not receive significant contributions from resonance, but are a consequence of the r-skeleton framework.
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