All Questions
16 questions
1
vote
1
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269
views
How do I extract edges that contain a certain label in a dot file?
My objective is to extract paths that contain a certain label within a dot file. However, this is the first time I have worked with a dot file. I have no idea how to extract the labels of a dot file ...
- 1,717
0
votes
2
answers
579
views
Can't generate graph using graphviz and dot layout
I am using pygraphviz 1.6 to generate the a plot using Python 3.6. Unfortunately, I can't update Python.
While generating the graph, the command graph.layout("dot") generates the error:
...
- 3,332
1
vote
1
answer
594
views
How to color a specific path in a graphviz dot file using python
Hello I am iterating a dot file in python using pydot package. I want to color all nodes and edges in a graph who are a parent of particular node unto the starting root. the images below describes the ...
- 2,640
0
votes
1
answer
544
views
How to solve "[Errno 9] Bad file descriptor" emerging from "pydotplus.graph_from_dot_file"?
I have a function setted up to model some data with a DeccisionTreeClassifier algorithm where I can adjust the max depth of the tree. This function returns the score, the confussion matrix as well as ...
- 3
0
votes
1
answer
699
views
Find cluster/subgraph of nodes in dot
I have a dot file that contains a graph having different clusters, something like:
subgraph cluster_bb_5020 {
style=filled fillcolor=white
label="label [5020]"
...
- 323
1
vote
1
answer
705
views
Graphviz cluster changes layout order of internal nodes - how to correct?
The following graphviz nodes arrange into a C shape as expected when rendered using dot:
digraph G {
newrank=true;
"001_getCtInputChunk" [shape=rect, label="@disk_cache\ngetCtInputChunk"];
"...
- 1,447
2
votes
1
answer
4k
views
Delete a Node in Graphviz
Is there a nice way to delete a node from a graph?
I am using graphviz library to create nodes but they don't have a function to delete a node
Purpose:
[I want to show that a node moved from a ...
3
votes
0
answers
712
views
Formatting multiple subgraphs - pydot
I am new to pydot which I would use to create a graph. I would like to format the nodes so as to have blocks of nodes in the same line. I accomplished that using subgraphs, and settings the rank to be ...
- 3,418
1
vote
3
answers
7k
views
Python Decision Tree GraphViz
I'm attempting to implement a Decision Tree with scikit learn and then visualise the tree with Graphviz which I understand is the standard choice for visualising DT. I'm using PyCharm, anaconda, ...
- 3,156
5
votes
2
answers
3k
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Visualizing scikit-learn/ sklearn multi-output decision tree regression in png or pdf
this is the first question I'm posting on stackoverflow so I apologize for any mishaps in layout and so on (advice welcome). Your help is much appreciated!
I'm trying to visualize the output of ...
- 642
2
votes
1
answer
3k
views
Parsing comments in dot file with python
I'm using pydot for parsing dot files in python. I can't find a way to parse comments present in the dot file itself, is there any way to do it?
By just looking at the documentation I couldn't find ...
- 1,635
1
vote
1
answer
3k
views
Line up the heads of Dot graph using PyDot?
I'm making a dynamically generated graph of my lab experiments. This is what it looks like now:
Ideally I'd like the blue nodes to be in a line across the top, so that current experiments are visible ...
- 2,055
2
votes
1
answer
2k
views
How to use port names in record nodes in pydot
I haven't been able to find a way to draw nodes with ports in pydot: neither in the documentation nor in examples on the web.
Is there a way to draw the following graph using pydot?
diagram:
...
- 23
0
votes
1
answer
812
views
Using a DOT graph as a basis for tree GUI
I want to use a graph that is generated by DOT (pyDot in python) as the basis for an interactive Tree-structured GUI in which each of the nodes in the Tree could be widgets.
The tree will basically ...
2
votes
1
answer
3k
views
test for node membership in pydot graph
pydot has a huge number of bound methods for getting and setting every little thing in a dot graph, reading and writing, you-name-it, but I can't seem to find a simple membership test.
>>> d ...
- 690
1
vote
1
answer
842
views
How to render DOT file using only pos attributes
I have taken an initial DOT file and modified the pos attributes of some nodes using pydot. Now I want to render an image file that shows the nodes in their new positions. The catch is, I don't want a ...
- 205