The study was designed to determine the prevalence and epidemiology of SARS-CoV-2 variants during... more The study was designed to determine the prevalence and epidemiology of SARS-CoV-2 variants during the fifth wave of COVID-19 in selected districts of Punjab, Pakistan. The nasal swab samples (n=708)1 of suspected patients from various districts across Punjab were collected between December 2021 to April 2022. The genome extraction was done using an auto-extractor (Uni-medica) in the BSL-3 facility. Reverse-transcription real-time polymerase chain reaction (RT-PCR) was employed for viral detection and quantification. For the identification of SARS-CoV-2 variants, various mutations of spike protein were targeted using Multiplex PCR. The study’s results revealed the Omicron variant of concern (VOC) as the prevalent lineage of SARS-CoV-2 circulating in the selected regions of Punjab at the time of sampling. The VOC accounted for 90.01% of COVID-19 cases, followed by Delta (6.81%) and wild variant (3.80%). Prevalence of Omicron (VOC) was recorded higher in men (47.96%) as compared to wom...
Iodine complexes have known antimicrobial properties along with reported in-vitro antiviral activ... more Iodine complexes have known antimicrobial properties along with reported in-vitro antiviral activity for several viruses. Renessans is one such product with iodine complexes and ascorbic acid. The present study was designed to determine its efficacy for SARS-CoV-2 in Rhesus macaque. Rhesus macaque were assigned to: A) prophylactic group (n = 3), (B) treatment group (n = 3), (C) infection control group (n = 4), and (D) negative control group (n = 4). Groups A, B, and C were challenged with 2 × 106 TCID of SARS-CoV-2. The prophylactic group (A) was administered Renessans from 5 days before infection till 8 days postinfection (DPI). The treatment group (B) was administered Renessans from 3 till 8 DPI. Group C was administered water-insoluble fractions only. Nasal swabs from all monkeys of groups A, B, and C remained positive for SARS-CoV-2 till 2 and 7 DPI, while the swabs became negative for groups A and B at 14 DPI. Likewise, fecal matter of monkeys in group A returned negative resul...
European of agriculture and food sciences, Feb 5, 2023
Campylobacter, one of the most prevalent bacteria responsible for gastroenteritis in human worldw... more Campylobacter, one of the most prevalent bacteria responsible for gastroenteritis in human worldwide. Campylobacter infections result from ingestion of contaminated food and water depending upon susceptibility of individuals and virulence of infecting strain. The prevalence of these bacteria is highly diverse and present worldwide. Increase in antibiotic resistance among these bacteria is recognized as emerging public health problem. Current study is designed to analyze the risk factors related with Campylobacteriosis, prevalence in meat (chicken, beef and mutton) and antimicrobial resistance profiles of these bacteria from district Okara, Pakistan. The time span for lab work was from October 2020 to March 2021including sampling and testing. A total of 300 swab samples were collected from poultry, beef and mutton. The ISO 10272-1:217(E) method for isolation through biochemical and molecular identification carried out. Disc diffusion method used for AMR calculation. The overall prevalence of campylobacter was only 2%, detected only in poultry meat out of 300 samples. Among the isolated strains, Campylobacter indicated highest resistance against Tetracycline 100%, followed by Cefotaxime, Tylocine 83%, Enrofloxacin 66%, Clindamycin and Nalidixic acid 50%, lowest resistance against Streptomycin and Doxycycline only 33% and 16% respectively. The significance relation was obtained for two variables that include eating during dealing meat and contact of excreta with meat. Prevalence of Campylobacter is very low as compared to study conducted earlier in Pakistan. The drug of choice for Campylobacter related infections is doxycycline and streptomycin. The results indicate that prevalence of Campylobacter is very low on meat in Okara region but higher microbial resistance.
Authors' Contribution QH, YL, HZ and ZT conceived and designed the experiments. JD, KH, YY and QL... more Authors' Contribution QH, YL, HZ and ZT conceived and designed the experiments. JD, KH, YY and QL performed the experiments. MK, ZZ, NQ, YJ and SAF contributed reagents, materials, and analysis tools. HZ and QH wrote the manuscript.
During December 2019, a novel coronavirus named SARS-CoV-2 has emerged in Wuhan, China. The human... more During December 2019, a novel coronavirus named SARS-CoV-2 has emerged in Wuhan, China. The human to human transmission of this virus has also been established. The virus has so far infected more than 2 million people and spread over 200 countries. The World Health Organization (WHO) has declared COVID-19 a global health emergency due to its spread well beyond China. It has been established that this virus originates from bats and uses an intermediate host for transfer to humans. The knowledge about the intermediate host is important to find the virus shuttle mechanism to stop future outbreaks. For this, the genetic and structural analysis of coronaviruses spike proteins was performed using a computer-assisted approach.To conduct the In silico analysis, 43 sequences of spike protein belong to different species were retrieved from the NCBI nucleotide database. Pairwise and multiple sequence alignments were performed to check the similarities and differences of the retrieved sequences...
Since the emergence of COVID-19 pandemic in China in late 2019, scientists are striving hard to e... more Since the emergence of COVID-19 pandemic in China in late 2019, scientists are striving hard to explore non-toxic, viable anti-SARS-CoV-2 compounds or medicines. We determined In vitro anti-SARS-CoV-2 activity of oral formulations (syrup and capsule)of an Iodine-complex (Renessans). First, cell cytotoxicity of Renessans on the Vero cells was determined using MTT assay. Afterwards, the antiviral activity of Renessans was determined using viral inhibition assays and TCID 50. For this, nontoxic concentrations of the Renessans were used. The results showed that Renessans is nontoxic to the cells up to 50 µg/mL. At 1.5 µg/mL concentration, SARS-CoV-2 production was significantly reduced to 10 1.43 TCID 50 and 10 1.58 TCID 50 for the syrup and capsule, respectively, as compare to virus infected control cells 10 6.08 TCID 50 and we found the dose dependent inhibition of virus replication in the presence of Renessans. Renessans inhibited SARS-CoV-2 with an EC50 value of 0.425 µg/mL and 0.505 µg/mL for syrup and capsule, respectively. Furthermore, there was no virus detected at concentration of 50 µg/mL of Renessans. This study indicates that Renessans, containing iodine, have potential activity against SARS-CoV-2 which needs to be further investigated in human clinical trials.
Each year, foot-and-mouth disease leads to enormous economic losses to the livestock industry. Cu... more Each year, foot-and-mouth disease leads to enormous economic losses to the livestock industry. Currently, the killed whole virus is widely using to control FMD. However, vaccination is constrained by lack of or incomplete protection. Therefore, along with vaccination, we need to find the antivirals against FMD. This study was conducted to investigate the antiviral potential of ivermectin against multiple serotypes of FMDV. Initially, an MTT assay was performed on the BHK-21 cell line to determine assay ivermectin cytotoxicity. Viral inhibition assays using the non-cytotoxic concentration of ivermectin were performed to check the antiviral potential of ivermectin on different stages of virus replication. At 2.5 μM and 5 μM concentrations of ivermectin, the virus titer was reduced significantly (p < 0.001) by two to three log in all three strains of viruses at both non-toxic concentrations (2.5 and 5 μM). The virus titer in strain O control was 106.0 TCID50/0.1 mL and was reduced to 104.1 TCID50/0.1 mL at a concentration of 2.5 μM and 103.10 TCID50/0.1 mL at 5 μM concentration. In the case of strain Asia-1, the virus titer was reduced to 103.8 TCID50/0.1 mL at 2.5 μM and 103.01TCID50/0.1 mL at 5 μM concentration. The titer of strain A was reduced from 105.8 TCID50/0.1 mL to 103.9 TCID50/0.1 mL at 2.5 μM concentration and 103.1 TCID50/0.1 mL at 5 μM concentration. Moreover, the virus titer was reduced more at the replication stage as compared to attachment and entry stages. This study showed the in vitro anti-FMDV potential of ivermectin for the first time and predicted its potential use against FMDV infections.
The wide acceptability of ICTs and social media enriches the delivery platform of e-gov services ... more The wide acceptability of ICTs and social media enriches the delivery platform of e-gov services (EGS). EGS is an important interaction and collaboration channel between the government and the public. The public can conveniently and timely explore problems, provide ideas, and design solutions to improve EGS. The roles of the public changed to active, informed partners or cocreators of EGS innovation and problem solving. This study builds the influence factor model on public engaging intention of value co-creation for EGS based on technology acceptance theory, trust theory, and motivation theory to explore impact factors and impact paths. Path analysis interpreted how the public would accept and adopt value co-creation behavior for EGS. This study also introduced a comprehensive picture of the new paradigm of public service value creation in an era of increasing user dominance, that is, the public.
The emergence of SARS-CoV-2 has been reported during December 2019, in the city of Wuhan, China. ... more The emergence of SARS-CoV-2 has been reported during December 2019, in the city of Wuhan, China. The transmission of this virus via human to human interaction has already been described. The novel virus has become pandemic and declared as a comprehensive emergency worldwide by World Health Organization due to its exponential spread within and outside China. There is a need of time to create a therapeutic agent and a vaccine to cure and control this lethal SARS-CoV-2. Conventionally, the vaccine development process is time taking, tiresome and requires more economical inputs with manpower. However, bioinformatics offers a key solution to compute the possibilities. The present study focuses on the utilization of bioinformatics platforms to forecast B and T cell epitopes that belong to SARS-CoV-2 spike glycoprotein. The protein is thought to have an involvement in triggering of momentous immune response. NCBI database was explored to collect the surface glycoprotein sequence and was analyzed to determine the immunogenic epitopes. This prediction analysis was carried out using IEDB web based server and the prediction of protein structure was done by homology modeling approach. This study resulted in prediction of 5 T cell and 13 B cell epitopes. Moreover, GPGPG linker was used to make these predicted epitopes a single peptide prior to further analysis. Afterwards, a 3D model of the final vaccine peptide was constructed, and the structure quality of the final construct was checked by Ramachandran Plot analysis and ProSA-web. Moreover, docking analysis highlighted three interactions of epitope against HLA-B7 including Lys 178, Gol 303 and Thr 31 residues. In conclusion, the predicted multi epitope peptide can be suggested as therapeutic or prophylactic candidate vaccine against SARS-CoV-2 after further confirmation by immunological assays.
Journal of Biomedical Research & Environmental Sciences, 2021
This century has faced various pandemics within the couple of decades. These pandemics knocked gl... more This century has faced various pandemics within the couple of decades. These pandemics knocked global public health systems and opened up the gaps to grasp these outbreaks. Quarantine or isolation of the susceptible individuals is an ancient technique that has been proven very effective. This technique is however not practiced accurately for current pandemic of COVID-19, due to which the COVID-19 infection is re-occurring in most part of the world.
Objective: To determine the significant role of FNAC upon other diagnosticmodalities in pre-opera... more Objective: To determine the significant role of FNAC upon other diagnosticmodalities in pre-operative investigations of patients presenting with solitary thyroid nodules and to compare the postoperative histopathological results with the results of FNAC. Design: A Comparative study. Place and Duration ofStudy: Department of Surgery Combined Military Hospital Quetta and Combined Military Hospital Rawalpindi fromDecember 1999 to December 2001. Patients and Methods: In this study 46 patients with solitary thyroid nodule werestudied. Only 2 patients were toxic while remaining 44 were with euthyroid. In this study only one case was suspectedto be malignant clinically out of 5 malignant cases. All 46 patients under went thyroid scanning, ultrasound examinationand fine needle aspiration biopsy and the diagnostic accuracy was assessed. Results: 36 patients (78.26%) wereoperated while 10(21.73%) were managed conservatively. There were 5(10.86%) malignant nodules while 41(89.13%)were benign. ...
Background: Antibiotics are in use since decades to treat various infections caused by Gram-posit... more Background: Antibiotics are in use since decades to treat various infections caused by Gram-positive and Gram-negative bacteria such as Staphylococcus aureus and Pseudomonas aeruginosa. Diphenhydramine, an H1 receptor blocker possesses a weak antibiotic action but when combined with other antibiotics may potentiate their antibacterial activity. Materials & methods: This study investigated in vitro antibacterial activity of diphenhydramine when used alone and in combination with levofloxacin against methicillin-resistant S. aureus and P. aeruginosa. Results: The combined antibacterial effect of the drugs against bacteria showed a fractional inhibitory concentration index of ≤0.5, in other words, synergism. No cytotoxicity was observed as percentage cell viability was >50%. Conclusion: The combination of diphenhydramine and levofloxacin exerted antibacterial activity, and was not found to be cytotoxic when given in combination against P. aeruginosa and S. aureus.
ABSTRACTSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections has affected more... more ABSTRACTSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections has affected more than 15 million people and, as of 22 July 2019, caused deaths of more than 0.6 million individuals globally. With the excretion of SARS-CoV-2 in the stool of symptomatic and asymptomatic COVID-19 patients, its genome detection in the sewage water can be used as a powerful epidemiological tool to predict the number of positive cases in a population. This study was conducted to detect SARS-CoV-2 genome in sewage water during the lockdown. Sewage samples, from 28 pre-selected sites, were collected on alternate days from 13-25 July, 2020 from two selected areas [Johar Town (n = 05) and Township (n = 23)], where smart lockdown were implemented by the government authorities on 9th July, 2020. Genomic RNA was extracted and the SARS-CoV-2 was detected and quantified using commercially available kit through Real-Time PCR. Out of 28, sixteen samples were positive on day one while 19, 17, 23, 17, ...
Authors' Contributions SR, SA, IA and ZN conceived and designed the study. SA and SR analysed the... more Authors' Contributions SR, SA, IA and ZN conceived and designed the study. SA and SR analysed the data. SA, SR, MR, SF, ZN wrote the article.
ABSTRACTSince the emergence of CoVID-19 pandemic in China in late 2019, scientists are striving h... more ABSTRACTSince the emergence of CoVID-19 pandemic in China in late 2019, scientists are striving hard to explore non-toxic, viable anti-SARS-CoV-2 compounds or medicines. We determined In Vitro anti-SARS-CoV-2 activity of oral formulations (syrup and capsule) of an Iodine-complex (Renessans). A monolayer of vero cells were exposed to SARS-CoV-2 in the presence and absence of different concentrations (equivalent to 50, 05 and 0.5 μg/ml of I2) of Renessans. Anti-SARS-CoV-2 activity of each of the formulation was assessed in the form of cell survival, SARS-CoV-2-specific cytopathic effect (CPE) and genome quantization. With varying concentrations of syrup and capsule, a varying rate of inhibition of CPE, cells survival and virus replication was observed. Compared to 0.5 μg/ml concentration of Renessans syrup, 5 and 50 μg/ml showed comparable results where there was a 100% cell survival, no CPEs and a negligible viral replication (ΔCT= 0.11 and 0.13, respectively). This study indicates t...
As of 26 March 2020, Pakistan had 1179 cases of COVID-19, with most 421 cases from Sindh, 394 cas... more As of 26 March 2020, Pakistan had 1179 cases of COVID-19, with most 421 cases from Sindh, 394 cases, 131 cases, 123 cases, 84 cases, 25 cases and 01 cases from Punjab, Balochistan, Khyber Pakhtunkhwa, Gilgit-Baltistan, Islamabad Capital Territory, and Azad Jammu and Kashmir respectively. Travel-related cases were the main source of SARS-CoV-2 infection during the early phase of the pandemic in Pakistan. Nevertheless, cases of local virus transmission are increasing day by day. As of 26 March 2020, nine deaths have been reported from COVID-19. The case fatality rate is 0.8%, which is less compare to China, Italy, USA, and Iran. The SIR (Susceptible-Infected-Recovered) model of epidemiological analysis predicts that almost 90 million population will be infected in the coming days with 5% critical cases that need health care facilities. However, the Pakistan health care system cannot provide services to this much population. Hence, we need to act timely to reduce this number by restric...
Bovine herpesvirus1 (BoHV-1) is a major bovine pathogen. Despite several vaccines being available... more Bovine herpesvirus1 (BoHV-1) is a major bovine pathogen. Despite several vaccines being available to prevent viral infection, outbreaks are frequent and cause important economic consequences worldwide. The development of new antiviral drugs is therefore highly desirable. In this context, viral genome replication represents a potential target for therapeutic intervention. BoHV-1 genome is a dsDNA molecule whose replication takes place in the nuclei of infected cells and is mediated by a viral encoded DNA polymerase holoenzyme. Here, we studied the physical interaction and subcellular localization of BoHV-1 DNA polymerase subunits in cells for the first time. By means of co-immunoprecipitation and confocal laser scanning microscopy (CLSM) experiments, we could show that the processivity factor of the DNA polymerase pUL42 is capable of being autonomously transported into the nucleus, whereas the catalytic subunit pUL30 is not. Accordingly, a putative classic NLS (cNLS) was identified o...
During December 2019, a novel coronavirus named as 2019-nCoV, has emerged in Wuhan, China. The hu... more During December 2019, a novel coronavirus named as 2019-nCoV, has emerged in Wuhan, China. The human to human transmission of this virus has also been established. Untill now the virus has infected more than seven thousand people and has spread to fifteen countries. The World Health Organization (WHO) has declared 2019-nCoV as global health emergency due to its outburst well beyond China. There is need to develop some vaccines or therapeutics to control or prevent 2019-nCoV infections. The bottleneck with current conventional approaches is that these require longer time for vaccine development. However, computer assisted approaches help us to produce effective vaccine in short time compared with conventional methods. In this study, bioinformatics analysis was used to predict B cell and T cell epitopes of surface glycoprotein of 2019-nCoV that could be suitable to trigger significant immune response. The sequence of surface glycoprotein was collected from the database and analyzed to...
The study was designed to determine the prevalence and epidemiology of SARS-CoV-2 variants during... more The study was designed to determine the prevalence and epidemiology of SARS-CoV-2 variants during the fifth wave of COVID-19 in selected districts of Punjab, Pakistan. The nasal swab samples (n=708)1 of suspected patients from various districts across Punjab were collected between December 2021 to April 2022. The genome extraction was done using an auto-extractor (Uni-medica) in the BSL-3 facility. Reverse-transcription real-time polymerase chain reaction (RT-PCR) was employed for viral detection and quantification. For the identification of SARS-CoV-2 variants, various mutations of spike protein were targeted using Multiplex PCR. The study’s results revealed the Omicron variant of concern (VOC) as the prevalent lineage of SARS-CoV-2 circulating in the selected regions of Punjab at the time of sampling. The VOC accounted for 90.01% of COVID-19 cases, followed by Delta (6.81%) and wild variant (3.80%). Prevalence of Omicron (VOC) was recorded higher in men (47.96%) as compared to wom...
Iodine complexes have known antimicrobial properties along with reported in-vitro antiviral activ... more Iodine complexes have known antimicrobial properties along with reported in-vitro antiviral activity for several viruses. Renessans is one such product with iodine complexes and ascorbic acid. The present study was designed to determine its efficacy for SARS-CoV-2 in Rhesus macaque. Rhesus macaque were assigned to: A) prophylactic group (n = 3), (B) treatment group (n = 3), (C) infection control group (n = 4), and (D) negative control group (n = 4). Groups A, B, and C were challenged with 2 × 106 TCID of SARS-CoV-2. The prophylactic group (A) was administered Renessans from 5 days before infection till 8 days postinfection (DPI). The treatment group (B) was administered Renessans from 3 till 8 DPI. Group C was administered water-insoluble fractions only. Nasal swabs from all monkeys of groups A, B, and C remained positive for SARS-CoV-2 till 2 and 7 DPI, while the swabs became negative for groups A and B at 14 DPI. Likewise, fecal matter of monkeys in group A returned negative resul...
European of agriculture and food sciences, Feb 5, 2023
Campylobacter, one of the most prevalent bacteria responsible for gastroenteritis in human worldw... more Campylobacter, one of the most prevalent bacteria responsible for gastroenteritis in human worldwide. Campylobacter infections result from ingestion of contaminated food and water depending upon susceptibility of individuals and virulence of infecting strain. The prevalence of these bacteria is highly diverse and present worldwide. Increase in antibiotic resistance among these bacteria is recognized as emerging public health problem. Current study is designed to analyze the risk factors related with Campylobacteriosis, prevalence in meat (chicken, beef and mutton) and antimicrobial resistance profiles of these bacteria from district Okara, Pakistan. The time span for lab work was from October 2020 to March 2021including sampling and testing. A total of 300 swab samples were collected from poultry, beef and mutton. The ISO 10272-1:217(E) method for isolation through biochemical and molecular identification carried out. Disc diffusion method used for AMR calculation. The overall prevalence of campylobacter was only 2%, detected only in poultry meat out of 300 samples. Among the isolated strains, Campylobacter indicated highest resistance against Tetracycline 100%, followed by Cefotaxime, Tylocine 83%, Enrofloxacin 66%, Clindamycin and Nalidixic acid 50%, lowest resistance against Streptomycin and Doxycycline only 33% and 16% respectively. The significance relation was obtained for two variables that include eating during dealing meat and contact of excreta with meat. Prevalence of Campylobacter is very low as compared to study conducted earlier in Pakistan. The drug of choice for Campylobacter related infections is doxycycline and streptomycin. The results indicate that prevalence of Campylobacter is very low on meat in Okara region but higher microbial resistance.
Authors' Contribution QH, YL, HZ and ZT conceived and designed the experiments. JD, KH, YY and QL... more Authors' Contribution QH, YL, HZ and ZT conceived and designed the experiments. JD, KH, YY and QL performed the experiments. MK, ZZ, NQ, YJ and SAF contributed reagents, materials, and analysis tools. HZ and QH wrote the manuscript.
During December 2019, a novel coronavirus named SARS-CoV-2 has emerged in Wuhan, China. The human... more During December 2019, a novel coronavirus named SARS-CoV-2 has emerged in Wuhan, China. The human to human transmission of this virus has also been established. The virus has so far infected more than 2 million people and spread over 200 countries. The World Health Organization (WHO) has declared COVID-19 a global health emergency due to its spread well beyond China. It has been established that this virus originates from bats and uses an intermediate host for transfer to humans. The knowledge about the intermediate host is important to find the virus shuttle mechanism to stop future outbreaks. For this, the genetic and structural analysis of coronaviruses spike proteins was performed using a computer-assisted approach.To conduct the In silico analysis, 43 sequences of spike protein belong to different species were retrieved from the NCBI nucleotide database. Pairwise and multiple sequence alignments were performed to check the similarities and differences of the retrieved sequences...
Since the emergence of COVID-19 pandemic in China in late 2019, scientists are striving hard to e... more Since the emergence of COVID-19 pandemic in China in late 2019, scientists are striving hard to explore non-toxic, viable anti-SARS-CoV-2 compounds or medicines. We determined In vitro anti-SARS-CoV-2 activity of oral formulations (syrup and capsule)of an Iodine-complex (Renessans). First, cell cytotoxicity of Renessans on the Vero cells was determined using MTT assay. Afterwards, the antiviral activity of Renessans was determined using viral inhibition assays and TCID 50. For this, nontoxic concentrations of the Renessans were used. The results showed that Renessans is nontoxic to the cells up to 50 µg/mL. At 1.5 µg/mL concentration, SARS-CoV-2 production was significantly reduced to 10 1.43 TCID 50 and 10 1.58 TCID 50 for the syrup and capsule, respectively, as compare to virus infected control cells 10 6.08 TCID 50 and we found the dose dependent inhibition of virus replication in the presence of Renessans. Renessans inhibited SARS-CoV-2 with an EC50 value of 0.425 µg/mL and 0.505 µg/mL for syrup and capsule, respectively. Furthermore, there was no virus detected at concentration of 50 µg/mL of Renessans. This study indicates that Renessans, containing iodine, have potential activity against SARS-CoV-2 which needs to be further investigated in human clinical trials.
Each year, foot-and-mouth disease leads to enormous economic losses to the livestock industry. Cu... more Each year, foot-and-mouth disease leads to enormous economic losses to the livestock industry. Currently, the killed whole virus is widely using to control FMD. However, vaccination is constrained by lack of or incomplete protection. Therefore, along with vaccination, we need to find the antivirals against FMD. This study was conducted to investigate the antiviral potential of ivermectin against multiple serotypes of FMDV. Initially, an MTT assay was performed on the BHK-21 cell line to determine assay ivermectin cytotoxicity. Viral inhibition assays using the non-cytotoxic concentration of ivermectin were performed to check the antiviral potential of ivermectin on different stages of virus replication. At 2.5 μM and 5 μM concentrations of ivermectin, the virus titer was reduced significantly (p < 0.001) by two to three log in all three strains of viruses at both non-toxic concentrations (2.5 and 5 μM). The virus titer in strain O control was 106.0 TCID50/0.1 mL and was reduced to 104.1 TCID50/0.1 mL at a concentration of 2.5 μM and 103.10 TCID50/0.1 mL at 5 μM concentration. In the case of strain Asia-1, the virus titer was reduced to 103.8 TCID50/0.1 mL at 2.5 μM and 103.01TCID50/0.1 mL at 5 μM concentration. The titer of strain A was reduced from 105.8 TCID50/0.1 mL to 103.9 TCID50/0.1 mL at 2.5 μM concentration and 103.1 TCID50/0.1 mL at 5 μM concentration. Moreover, the virus titer was reduced more at the replication stage as compared to attachment and entry stages. This study showed the in vitro anti-FMDV potential of ivermectin for the first time and predicted its potential use against FMDV infections.
The wide acceptability of ICTs and social media enriches the delivery platform of e-gov services ... more The wide acceptability of ICTs and social media enriches the delivery platform of e-gov services (EGS). EGS is an important interaction and collaboration channel between the government and the public. The public can conveniently and timely explore problems, provide ideas, and design solutions to improve EGS. The roles of the public changed to active, informed partners or cocreators of EGS innovation and problem solving. This study builds the influence factor model on public engaging intention of value co-creation for EGS based on technology acceptance theory, trust theory, and motivation theory to explore impact factors and impact paths. Path analysis interpreted how the public would accept and adopt value co-creation behavior for EGS. This study also introduced a comprehensive picture of the new paradigm of public service value creation in an era of increasing user dominance, that is, the public.
The emergence of SARS-CoV-2 has been reported during December 2019, in the city of Wuhan, China. ... more The emergence of SARS-CoV-2 has been reported during December 2019, in the city of Wuhan, China. The transmission of this virus via human to human interaction has already been described. The novel virus has become pandemic and declared as a comprehensive emergency worldwide by World Health Organization due to its exponential spread within and outside China. There is a need of time to create a therapeutic agent and a vaccine to cure and control this lethal SARS-CoV-2. Conventionally, the vaccine development process is time taking, tiresome and requires more economical inputs with manpower. However, bioinformatics offers a key solution to compute the possibilities. The present study focuses on the utilization of bioinformatics platforms to forecast B and T cell epitopes that belong to SARS-CoV-2 spike glycoprotein. The protein is thought to have an involvement in triggering of momentous immune response. NCBI database was explored to collect the surface glycoprotein sequence and was analyzed to determine the immunogenic epitopes. This prediction analysis was carried out using IEDB web based server and the prediction of protein structure was done by homology modeling approach. This study resulted in prediction of 5 T cell and 13 B cell epitopes. Moreover, GPGPG linker was used to make these predicted epitopes a single peptide prior to further analysis. Afterwards, a 3D model of the final vaccine peptide was constructed, and the structure quality of the final construct was checked by Ramachandran Plot analysis and ProSA-web. Moreover, docking analysis highlighted three interactions of epitope against HLA-B7 including Lys 178, Gol 303 and Thr 31 residues. In conclusion, the predicted multi epitope peptide can be suggested as therapeutic or prophylactic candidate vaccine against SARS-CoV-2 after further confirmation by immunological assays.
Journal of Biomedical Research & Environmental Sciences, 2021
This century has faced various pandemics within the couple of decades. These pandemics knocked gl... more This century has faced various pandemics within the couple of decades. These pandemics knocked global public health systems and opened up the gaps to grasp these outbreaks. Quarantine or isolation of the susceptible individuals is an ancient technique that has been proven very effective. This technique is however not practiced accurately for current pandemic of COVID-19, due to which the COVID-19 infection is re-occurring in most part of the world.
Objective: To determine the significant role of FNAC upon other diagnosticmodalities in pre-opera... more Objective: To determine the significant role of FNAC upon other diagnosticmodalities in pre-operative investigations of patients presenting with solitary thyroid nodules and to compare the postoperative histopathological results with the results of FNAC. Design: A Comparative study. Place and Duration ofStudy: Department of Surgery Combined Military Hospital Quetta and Combined Military Hospital Rawalpindi fromDecember 1999 to December 2001. Patients and Methods: In this study 46 patients with solitary thyroid nodule werestudied. Only 2 patients were toxic while remaining 44 were with euthyroid. In this study only one case was suspectedto be malignant clinically out of 5 malignant cases. All 46 patients under went thyroid scanning, ultrasound examinationand fine needle aspiration biopsy and the diagnostic accuracy was assessed. Results: 36 patients (78.26%) wereoperated while 10(21.73%) were managed conservatively. There were 5(10.86%) malignant nodules while 41(89.13%)were benign. ...
Background: Antibiotics are in use since decades to treat various infections caused by Gram-posit... more Background: Antibiotics are in use since decades to treat various infections caused by Gram-positive and Gram-negative bacteria such as Staphylococcus aureus and Pseudomonas aeruginosa. Diphenhydramine, an H1 receptor blocker possesses a weak antibiotic action but when combined with other antibiotics may potentiate their antibacterial activity. Materials & methods: This study investigated in vitro antibacterial activity of diphenhydramine when used alone and in combination with levofloxacin against methicillin-resistant S. aureus and P. aeruginosa. Results: The combined antibacterial effect of the drugs against bacteria showed a fractional inhibitory concentration index of ≤0.5, in other words, synergism. No cytotoxicity was observed as percentage cell viability was >50%. Conclusion: The combination of diphenhydramine and levofloxacin exerted antibacterial activity, and was not found to be cytotoxic when given in combination against P. aeruginosa and S. aureus.
ABSTRACTSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections has affected more... more ABSTRACTSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections has affected more than 15 million people and, as of 22 July 2019, caused deaths of more than 0.6 million individuals globally. With the excretion of SARS-CoV-2 in the stool of symptomatic and asymptomatic COVID-19 patients, its genome detection in the sewage water can be used as a powerful epidemiological tool to predict the number of positive cases in a population. This study was conducted to detect SARS-CoV-2 genome in sewage water during the lockdown. Sewage samples, from 28 pre-selected sites, were collected on alternate days from 13-25 July, 2020 from two selected areas [Johar Town (n = 05) and Township (n = 23)], where smart lockdown were implemented by the government authorities on 9th July, 2020. Genomic RNA was extracted and the SARS-CoV-2 was detected and quantified using commercially available kit through Real-Time PCR. Out of 28, sixteen samples were positive on day one while 19, 17, 23, 17, ...
Authors' Contributions SR, SA, IA and ZN conceived and designed the study. SA and SR analysed the... more Authors' Contributions SR, SA, IA and ZN conceived and designed the study. SA and SR analysed the data. SA, SR, MR, SF, ZN wrote the article.
ABSTRACTSince the emergence of CoVID-19 pandemic in China in late 2019, scientists are striving h... more ABSTRACTSince the emergence of CoVID-19 pandemic in China in late 2019, scientists are striving hard to explore non-toxic, viable anti-SARS-CoV-2 compounds or medicines. We determined In Vitro anti-SARS-CoV-2 activity of oral formulations (syrup and capsule) of an Iodine-complex (Renessans). A monolayer of vero cells were exposed to SARS-CoV-2 in the presence and absence of different concentrations (equivalent to 50, 05 and 0.5 μg/ml of I2) of Renessans. Anti-SARS-CoV-2 activity of each of the formulation was assessed in the form of cell survival, SARS-CoV-2-specific cytopathic effect (CPE) and genome quantization. With varying concentrations of syrup and capsule, a varying rate of inhibition of CPE, cells survival and virus replication was observed. Compared to 0.5 μg/ml concentration of Renessans syrup, 5 and 50 μg/ml showed comparable results where there was a 100% cell survival, no CPEs and a negligible viral replication (ΔCT= 0.11 and 0.13, respectively). This study indicates t...
As of 26 March 2020, Pakistan had 1179 cases of COVID-19, with most 421 cases from Sindh, 394 cas... more As of 26 March 2020, Pakistan had 1179 cases of COVID-19, with most 421 cases from Sindh, 394 cases, 131 cases, 123 cases, 84 cases, 25 cases and 01 cases from Punjab, Balochistan, Khyber Pakhtunkhwa, Gilgit-Baltistan, Islamabad Capital Territory, and Azad Jammu and Kashmir respectively. Travel-related cases were the main source of SARS-CoV-2 infection during the early phase of the pandemic in Pakistan. Nevertheless, cases of local virus transmission are increasing day by day. As of 26 March 2020, nine deaths have been reported from COVID-19. The case fatality rate is 0.8%, which is less compare to China, Italy, USA, and Iran. The SIR (Susceptible-Infected-Recovered) model of epidemiological analysis predicts that almost 90 million population will be infected in the coming days with 5% critical cases that need health care facilities. However, the Pakistan health care system cannot provide services to this much population. Hence, we need to act timely to reduce this number by restric...
Bovine herpesvirus1 (BoHV-1) is a major bovine pathogen. Despite several vaccines being available... more Bovine herpesvirus1 (BoHV-1) is a major bovine pathogen. Despite several vaccines being available to prevent viral infection, outbreaks are frequent and cause important economic consequences worldwide. The development of new antiviral drugs is therefore highly desirable. In this context, viral genome replication represents a potential target for therapeutic intervention. BoHV-1 genome is a dsDNA molecule whose replication takes place in the nuclei of infected cells and is mediated by a viral encoded DNA polymerase holoenzyme. Here, we studied the physical interaction and subcellular localization of BoHV-1 DNA polymerase subunits in cells for the first time. By means of co-immunoprecipitation and confocal laser scanning microscopy (CLSM) experiments, we could show that the processivity factor of the DNA polymerase pUL42 is capable of being autonomously transported into the nucleus, whereas the catalytic subunit pUL30 is not. Accordingly, a putative classic NLS (cNLS) was identified o...
During December 2019, a novel coronavirus named as 2019-nCoV, has emerged in Wuhan, China. The hu... more During December 2019, a novel coronavirus named as 2019-nCoV, has emerged in Wuhan, China. The human to human transmission of this virus has also been established. Untill now the virus has infected more than seven thousand people and has spread to fifteen countries. The World Health Organization (WHO) has declared 2019-nCoV as global health emergency due to its outburst well beyond China. There is need to develop some vaccines or therapeutics to control or prevent 2019-nCoV infections. The bottleneck with current conventional approaches is that these require longer time for vaccine development. However, computer assisted approaches help us to produce effective vaccine in short time compared with conventional methods. In this study, bioinformatics analysis was used to predict B cell and T cell epitopes of surface glycoprotein of 2019-nCoV that could be suitable to trigger significant immune response. The sequence of surface glycoprotein was collected from the database and analyzed to...
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Papers by Sohail Raza