(Q53282380)

13 May 2018

title

All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits. (English)

1 reference

13 May 2018

cryogenic electron microscopy

main subject

0 references

Jodi A Hadden

1

0 references

Juan R Perilla

Juan R Perilla

2

0 references

Adam Zlotnick

Adam Zlotnick

5

0 references

Klaus Schulten

6

Klaus Schulten

1 reference

PMC publication ID

5927769

Balasubramanian Venkatakrishnan

13 May 2018

4

Balasubramanian Venkatakrishnan

1 reference

13 May 2018

PMC publication ID

5927769

author name string

Christopher John Schlicksup

3

1 reference

13 May 2018

language of work or name

English

0 references

publication date

27 April 2018

1 reference

13 May 2018

published in

eLife

1 reference

13 May 2018

volume

7

1 reference

13 May 2018

Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations

cites work

1 reference

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All-Atom Molecular Dynamics Simulations of Entire Virus Capsid Reveal the Role of Ion Distribution in Capsid's Stability.

22 May 2018

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Nuclear Import of Hepatitis B Virus Capsids and Genome

22 May 2018

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22 May 2018

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HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis

22 May 2018

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All-Atom Molecular Dynamics of Virus Capsids as Drug Targets

22 May 2018

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Hepatitis B Virus Capsids Have Diverse Structural Responses to Small-Molecule Ligands Bound to the Heteroaryldihydropyrimidine Pocket

22 May 2018

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Hepatitis B Virus Core Protein Phosphorylation Sites Affect Capsid Stability and Transient Exposure of the C-terminal Domain

22 May 2018

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Self-Assembly of an Alphavirus Core-like Particle Is Distinguished by Strong Intersubunit Association Energy and Structural Defects.

22 May 2018

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Atomic Modeling of an Immature Retroviral Lattice Using Molecular Dynamics and Mutagenesis

22 May 2018

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22 May 2018

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The interface between hepatitis B virus capsid proteins affects self-assembly, pregenomic RNA packaging, and reverse transcription

22 May 2018

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All-atom molecular dynamics calculation study of entire poliovirus empty capsids in solution.

22 May 2018

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Recent Developments in Molecular Simulation Approaches to Study Spherical Virus Capsids.

22 May 2018

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Encapsidated hepatitis B virus reverse transcriptase is poised on an ordered RNA lattice

22 May 2018

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

22 May 2018

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3.5Å cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein

22 May 2018

1 reference

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Maturation-associated destabilization of hepatitis B virus nucleocapsid

22 May 2018

1 reference

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One number does not fit all: mapping local variations in resolution in cryo-EM reconstructions

22 May 2018

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Assembly-Directed Antivirals Differentially Bind Quasiequivalent Pockets to Modify Hepatitis B Virus Capsid Tertiary and Quaternary Structure

22 May 2018

1 reference

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The Asymmetric Structure of an Icosahedral Virus Bound to Its Receptor Suggests a Mechanism for Genome Release

22 May 2018

1 reference

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Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

22 May 2018

1 reference

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Early stages of the HIV-1 capsid protein lattice formation

22 May 2018

1 reference

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Structural organization of pregenomic RNA and the carboxy-terminal domain of the capsid protein of hepatitis B virus

22 May 2018

1 reference

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Virus capsid dissolution studied by microsecond molecular dynamics simulations

22 May 2018

1 reference

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Structural and energetic basis of allostery

22 May 2018

1 reference

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Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways

22 May 2018

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Global epidemiology of hepatitis B virus infection: new estimates of age-specific HBsAg seroprevalence and endemicity

22 May 2018

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A kinase chaperones hepatitis B virus capsid assembly and captures capsid dynamics in vitro

22 May 2018

1 reference

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Viral Capsid Equilibrium Dynamics Reveals Nonuniform Elastic Properties

22 May 2018

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ProDy: Protein Dynamics Inferred from Theory and Experiments

22 May 2018

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22 May 2018

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Virus assembly, allostery and antivirals

22 May 2018

1 reference

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Conformational Changes in the Hepatitis B Virus Core Protein Are Consistent with a Role for Allostery in Virus Assembly

22 May 2018

1 reference

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Production and function of the cytoplasmic deproteinized relaxed circular DNA of hepadnaviruses

22 May 2018

1 reference

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Elucidating the mechanism behind irreversible deformation of viral capsids

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

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22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Asymmetric binding of transferrin receptor to parvovirus capsids

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Global structural changes in hepatitis B virus capsids induced by the assembly effector HAP1.

22 May 2018

1 reference

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22 May 2018

1 reference

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Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin

22 May 2018

1 reference

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Molecular dynamics simulations of the complete satellite tobacco mosaic virus

22 May 2018

1 reference

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Scalable molecular dynamics with NAMD

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Calcium ions affect the hepatitis B virus core assembly.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

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22 May 2018

1 reference

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Competing hydrophobic and screened-coulomb interactions in hepatitis B virus capsid assembly

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

An elastic network model of HK97 capsid maturation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

The morphogenic linker peptide of HBV capsid protein forms a mobile array on the interior surface

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Nuclear pore complex is able to transport macromolecules with diameters of about 39 nm

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

The crystal structure of the human hepatitis B virus capsid

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

VMD: visual molecular dynamics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Geometric Defects and Icosahedral Viruses

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

A trimer of dimers is the basic building block for human immunodeficiency virus-1 capsid assembly

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Atomistic modeling of the low-frequency mechanical modes and Raman spectra of icosahedral virus capsids

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Maturation dynamics of bacteriophage HK97 capsid

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Zinc ions trigger conformational change and oligomerization of hepatitis B virus capsid protein

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Improved treatment of the protein backbone in empirical force fields.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Weak protein-protein interactions are sufficient to drive assembly of hepatitis B virus capsids

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

A theoretical model successfully identifies features of hepatitis B virus capsid assembly

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5927769

Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29708495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.32478

1 reference

13 May 2018

PMC publication ID

5927769

1 reference

13 May 2018

PubMed publication ID

29708495

1 reference

13 May 2018