(Q41513242)

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Conformational insights into the lesion and sequence effects for arylamine-induced translesion DNA synthesis: 19F NMR, surface plasmon resonance, and primer kinetic studies.

scientific article published on 10 June 2014

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scholarly article

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20 March 2020

Conformational insights into the lesion and sequence effects for arylamine-induced translesion DNA synthesis: 19F NMR, surface plasmon resonance, and primer kinetic studies (English)

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20 March 2020

surface plasmon resonance

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Satyakam Patnaik

3

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20 March 2020

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Vipin Jain

1

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20 March 2020

Vaidyanathan G Vaidyanathan

2

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20 March 2020

Sathyaraj Gopal

4

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20 March 2020

Bongsup P Cho

5

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20 March 2020

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10 June 2014

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20 March 2020

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20 March 2020

53

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20 March 2020

24

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20 March 2020

4059-4071

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20 March 2020

Mutagenicity and genotoxicity of (5'S)-8,5'-cyclo-2'-deoxyadenosine in Escherichia coli and replication of (5'S)-8,5'-cyclopurine-2'-deoxynucleosides in vitro by DNA polymerase IV, exo-free Klenow fragment, and Dpo4.

1 reference

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6 June 2018

Insights into the conformation of aminofluorene-deoxyguanine adduct in a DNA polymerase active site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Unusual sequence effects on nucleotide excision repair of arylamine lesions: DNA bending/distortion as a primary recognition factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Binary and ternary binding affinities between exonuclease-deficient Klenow fragment (Kf-exo(-)) and various arylamine DNA lesions characterized by surface plasmon resonance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Conformational and thermodynamic properties modulate the nucleotide excision repair of 2-aminofluorene and 2-acetylaminofluorene dG adducts in the NarI sequence

1 reference

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6 June 2018

DNA replication and repair bypass machines

1 reference

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6 June 2018

Probing for DNA damage with β-hairpins: Similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro

1 reference

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6 June 2018

Structures of 2-acetylaminofluorene modified DNA revisited: insight into conformational heterogeneity

1 reference

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6 June 2018

DNA polymerase: structural homology, conformational dynamics, and the effects of carcinogenic DNA adducts

1 reference

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6 June 2018

The C8-2'-deoxyguanosine adduct of 2-amino-3-methylimidazo[1,2-d]naphthalene, a carbocyclic analogue of the potent mutagen 2-amino-3-methylimidazo[4,5-f]quinoline, is a block to replication in vitro.

1 reference

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6 June 2018

Magnesium Coordination Controls the Molecular Switch Function of DNA Mismatch Repair Protein MutS

1 reference

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6 June 2018

Enthalpy-entropy contribution to carcinogen-induced DNA conformational heterogeneity

1 reference

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6 June 2018

Influence of flanking sequence context on the conformational flexibility of aminofluorene-modified dG adduct in dA mismatch DNA duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Steric and electrostatic effects in DNA synthesis by the SOS-induced DNA polymerases II and IV of Escherichia coli

1 reference

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6 June 2018

Probing the sequence effects on NarI-induced -2 frameshift mutagenesis by dynamic 19F NMR, UV, and CD spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

DNA Sequence Modulates the Conformation of the Food Mutagen 2-Amino-3-methylimidazo[4,5- f ]quinoline in the Recognition Sequence of the Nar I Restriction Enzyme † , ‡

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Examination of the long-range effects of aminofluorene-induced conformational heterogeneity and its relevance to the mechanism of translesional DNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Sequence effects of aminofluorene-modified DNA duplexes: thermodynamic and circular dichroism properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Dynamic conformational heterogeneities of carcinogen-DNA adducts and their mutagenic relevance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Nature and nurture - lessons from chemical carcinogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Biochemical analysis of the damage recognition process in nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Solution structure of the 2-amino-1- methyl-6-phenylimidazo[4,5-b]pyridine C8-deoxyguanosine adduct in duplex DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Factors that influence the mutagenic patterns of DNA adducts from chemical carcinogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

RPA stabilizes the XPA-damaged DNA complex through protein-protein interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Sequence-dependent modulation of frameshift mutagenesis at NarI-derived mutation hot spots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075988

6 June 2018

Effect of Ring Size on Conformations of Aromatic Amine−DNA Adducts: The Aniline−C8 Guanine Adduct Resides in the B-DNA Major Groove

1 reference

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6 June 2018

NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

1 reference

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6 June 2018

Genetic toxicity of 2-acetylaminofluorene, 2-aminofluorene and some of their metabolites and model metabolites

1 reference

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Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA).

1 reference

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6 June 2018

Conformation of d(CpG) modified by the carcinogen 4-aminobiphenyl: a combined experimental and theoretical analysis

1 reference

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6 June 2018

Single adduct mutagenesis: strong effect of the position of a single acetylaminofluorene adduct within a mutation hot spot

1 reference

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6 June 2018

Interaction studies of muts and mutl with DNA containing the major cisplatin lesion and its mismatched counterpart under equilibrium and nonequilibrium conditions

1 reference

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19 August 2018

Low fidelity bypass of O(2)-(3-pyridyl)-4-oxobutylthymine, the most persistent bulky adduct produced by the tobacco specific nitrosamine 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone by model DNA polymerases.

1 reference

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19 August 2018

Sequence effects on translesion synthesis of an aminofluorene-DNA adduct: conformational, thermodynamic, and primer extension kinetic studies

1 reference

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19 August 2018

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1 reference

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19 August 2018

Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase.

1 reference

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19 August 2018

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1 reference

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19 August 2018

Kinetics of DNA Polymerase I (Klenow Fragment Exo-) Activity on Damaged DNA Templates: Effect of Proximal and Distal Template Damage on DNA Synthesis†

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutagenic specificity of (acetylamino)fluorene-derived DNA adducts in mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/24915610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair†,∇

1 reference

https://pubmed.ncbi.nlm.nih.gov/24915610

12 December 2020

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inferred from PubMed ID database lookup

Analysis of Oligonucleotide Probe Affinities Using Surface Plasmon Resonance: A Means for Mutational Scanning

1 reference

https://pubmed.ncbi.nlm.nih.gov/24915610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural characterization of an N-acetyl-2-aminofluorene (AAF) modified DNA oligomer by NMR, energy minimization, and molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/24915610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR structural studies of a 15-mer DNA sequence from a ras protooncogene, modified at the first base of codon 61 with the carcinogen 4-aminobiphenyl

1 reference

https://pubmed.ncbi.nlm.nih.gov/24915610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI5003212

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Europe PubMed Central

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20 March 2020

PMC publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24915610%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24915610%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

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