(Q41052965)

26 September 2017

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title

Simulating DNA at low resolution (English)

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26 September 2017

Olson WK

1

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26 September 2017

publication date

1 April 1996

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Current Opinion in Structural Biology

26 September 2017

published in

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26 September 2017

volume

6

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26 September 2017

issue

2

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26 September 2017

page(s)

242-256

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Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.

26 September 2017

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7 January 2021

Comparison of rotation models for describing DNA conformations: application to static and polymorphic forms

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7 January 2021

B-DNA twisting correlates with base-pair morphology.

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7 January 2021

The Assessment of the Geometry of Dinucleotide Steps in Double-Helical DNA; a New Local Calculation Scheme

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7 January 2021

Molecular mechanics calculations of dA12.dT12 and of the curved molecule d(GCTCGAAAAA)4.d(TTTTTCGAGC)4

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7 January 2021

A general procedure for generation of curved DNA molecules.

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7 January 2021

An extension of the rigorous base-unit oriented description of nucleic acid structures

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7 January 2021

The ten helical twist angles of B-DNA.

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7 January 2021

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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7 January 2021

The effect of mathematics and coordinate system on comparability and "dependencies" of nucleic acid structure parameters.

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7 January 2021

Nucleic acid structure analysis: a users guide to a collection of new analysis programs

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7 January 2021

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

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7 January 2021

Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes

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7 January 2021

Flexing and folding double helical DNA

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7 January 2021

Stereochemical basis of DNA bending by transcription factors

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7 January 2021

Statistical analysis of DNA duplex structural features

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7 January 2021

Translational positioning of nucleosomes on DNA: the role of sequence-dependent isotropic DNA bending stiffness.

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7 January 2021

Modeling superhelical DNA: recent analytical and dynamic approaches.

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7 January 2021

Lattice ribbons: A model of double-stranded polymers

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7 January 2021

Electrostatic effects in short superhelical DNA

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7 January 2021

Knotting and supercoiling in circular DNA: A model incorporating the effect of added salt

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7 January 2021

The influence of salt on the structure and energetics of supercoiled DNA

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7 January 2021

Modeling of long-range electrostatic interactions in DNA.

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7 January 2021

Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation.

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7 January 2021

What is the basis of sequence-directed curvature in DNAs containing A tracts?

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7 January 2021

Self-fitting and Self-modifying Properties of theB-DNA Molecule

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7 January 2021

The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo

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7 January 2021

Polyelectrolyte effects in DNA condensation by polyamines.

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7 January 2021

On higher buckling transitions in supercoiled DNA.

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7 January 2021

Solvent effects on supercoiled DNA dynamics explored by Langevin dynamics simulations

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7 January 2021

Configurational statistics of the DNA duplex: extended generator matrices to treat the rotations and translations of adjacent residues

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7 January 2021

Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs

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7 January 2021

Modulation of intramolecular interactions in superhelical DNA by curved sequences: a Monte Carlo simulation study

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7 January 2021

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

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7 January 2021

Spatial translational motions of base pairs in DNA molecules: application of the extended matrix generator method

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7 January 2021

Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.

1 reference

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7 January 2021

Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature

1 reference

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7 January 2021

Action at a distance in supercoiled DNA: effects of sequence on slither, branching, and intramolecular concentration

1 reference

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7 January 2021

Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs

1 reference

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7 January 2021

Effects of localized bending on DNA supercoiling.

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7 January 2021

Computer simulation of protein-induced structural changes in closed circular DNA

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7 January 2021

Action at a distance: DNA-looping and initiation of transcription

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7 January 2021

Crystal structure of a yeast TBP/TATA-box complex

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7 January 2021

Sequence Elements Responsible for DNA Curvature

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7 January 2021

Computer simulation of the directional displacement of rod‐shaped, arc‐shaped, and circular objects in an array of obstacles, representing a simple model for the gel electrophoresis of small DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980082-0

7 January 2021

A parallel DNA triplex as a model for the intermediate in homologous recombination.

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7 January 2021

10.1016/S0959-440X(96)80082-0

Identifiers

DOI

1 reference

26 September 2017

1 reference