(Q39843784)

15 September 2017

Conservation of trans-acting circuitry during mammalian regulatory evolution (English)

1 reference

15 September 2017

3

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15 September 2017

4

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15 September 2017

John Stamatoyannopoulos

29

object named as

John A Stamatoyannopoulos

1 reference

15 September 2017

28

Elhanan Borenstein

1 reference

15 September 2017

24

Piper M Treuting

1 reference

15 September 2017

Andrew B Stergachis

1

1 reference

15 September 2017

Shane Neph

2

1 reference

15 September 2017

Alex P Reynolds

5

1 reference

15 September 2017

Miaohua Zhang

6

1 reference

15 September 2017

Rachel Byron

7

1 reference

15 September 2017

Theresa Canfield

8

1 reference

15 September 2017

Sandra Stelhing-Sun

9

1 reference

15 September 2017

Kristen Lee

10

1 reference

15 September 2017

Robert E Thurman

11

1 reference

15 September 2017

Shinny Vong

12

1 reference

15 September 2017

Daniel Bates

13

1 reference

15 September 2017

Fidencio Neri

14

1 reference

15 September 2017

Morgan Diegel

15

1 reference

15 September 2017

Erika Giste

16

1 reference

15 September 2017

Douglas Dunn

17

1 reference

15 September 2017

Jeff Vierstra

18

1 reference

15 September 2017

R Scott Hansen

19

1 reference

15 September 2017

Audra K Johnson

20

1 reference

15 September 2017

Peter J Sabo

21

1 reference

15 September 2017

Matthew S Wilken

22

1 reference

15 September 2017

Thomas A Reh

23

1 reference

15 September 2017

Rajinder Kaul

25

1 reference

15 September 2017

Mark Groudine

26

1 reference

15 September 2017

M A Bender

27

1 reference

15 September 2017

language of work or name

English

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publication date

1 November 2014

1 reference

15 September 2017

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15 September 2017

515

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15 September 2017

7527

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15 September 2017

365-370

1 reference

Evolution of transcription factor binding in metazoans - mechanisms and functional implications

15 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Exonic transcription factor binding directs codon choice and affects protein evolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Probing DNA shape and methylation state on a genomic scale with DNase I.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Personal and population genomics of human regulatory variation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

An expansive human regulatory lexicon encoded in transcription factor footprints

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

The accessible chromatin landscape of the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

BEDOPS: high-performance genomic feature operations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Robust relationship inference in genome-wide association studies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

MEME SUITE: tools for motif discovery and searching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Quantifying similarity between motifs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Superfamilies of evolved and designed networks.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Matrix2png: a utility for visualizing matrix data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Initial sequencing and comparative analysis of the mouse genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Network motifs: simple building blocks of complex networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Evidence for stabilizing selection in a eukaryotic enhancer element.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

TRANSFAC: a database on transcription factors and their DNA binding sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Evolution at two levels in humans and chimpanzees

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Circuitry and dynamics of human transcription factor regulatory networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Evolutionary changes in cis and trans gene regulation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405208

Conservation of RET regulatory function from human to zebrafish without sequence similarity

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25409825

12 December 2020

inferred from PubMed ID database lookup

KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

DNase footprint signatures are dictated by factor dynamics and DNA sequence

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

The human mitochondrial transcriptome

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

Amylases in the Human Vagina

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13972

7 January 2021

Identifiers

DOI

10.1038/NATURE13972

1 reference

15 September 2017

1 reference

15 September 2017

PubMed publication ID

25409825

1 reference