(Q38317337)

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A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth

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Europe PubMed Central

PubMed publication ID

2 September 2017

A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth (English)

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Europe PubMed Central

PubMed publication ID

2 September 2017

Escherichia coli

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author name string

Chrystala Constantinidou

1

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Jon L Hobman

2

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Europe PubMed Central

PubMed publication ID

2 September 2017

Lesley Griffiths

3

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Mala D Patel

4

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Charles W Penn

5

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Jeffrey A Cole

6

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Europe PubMed Central

PubMed publication ID

2 September 2017

Tim W Overton

7

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Europe PubMed Central

PubMed publication ID

2 September 2017

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publication date

22 December 2005

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Europe PubMed Central

PubMed publication ID

2 September 2017

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

2 September 2017

281

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Europe PubMed Central

PubMed publication ID

2 September 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

4802-4815

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Aerobic-anaerobic gene regulation in Escherichia coli: control by the ArcAB and Fnr regulons

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Two-dimensional gel electrophoretic analysis of Escherichia coli proteins: influence of various anaerobic growth conditions and the fnr gene product on cellular protein composition.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Anaerobic activation of arcA transcription in Escherichia coli: roles of Fnr and ArcA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Integration of three signals at the Escherichia coli nrf promoter: a role for Fis protein in catabolite repression

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Nitrate regulation of anaerobic respiratory gene expression in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: modulation of transcription initiation by a complex nucleo-protein assembly.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR-dependent Escherichia coli nir promoter

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

The complete genome sequence of Escherichia coli K-12

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth?

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Catabolite regulation of two Escherichia coli operons encoding nitrite reductases: role of the Cra protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC)

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Quinones as the redox signal for the arc two-component system of bacteria

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Identification of a quinone-sensitive redox switch in the ArcB sensor kinase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Regulation of Escherichia coli fumarate reductase (frdABCD) operon expression by respiratory electron acceptors and the fnr gene product

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Oxygen, nitrate, and molybdenum regulation of dmsABC gene expression in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Respiratory detoxification of nitric oxide by the cytochrome c nitrite reductase of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transcriptional responses of Escherichia coli to S-nitrosoglutathione under defined chemostat conditions reveal major changes in methionine biosynthesis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

New functions for the ancient globin family: bacterial responses to nitric oxide and nitrosative stress

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

NO sensing by FNR: regulation of the Escherichia coli NO-detoxifying flavohaemoglobin, Hmp.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transphosphorylation of the TorR response regulator requires the three phosphorylation sites of the TorS unorthodox sensor in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

The periplasmic TorT protein is required for trimethylamine N-oxide reductase gene induction in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Identification and characterization of the caiF gene encoding a potential transcriptional activator of carnitine metabolism in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

ModE-dependent molybdate regulation of the molybdenum cofactor operon moa in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transcriptional regulation of a hybrid cluster (prismane) protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Anaerobic regulation of the Escherichia coli dmsABC operon requires the molybdate‐responsive regulator ModE

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Anaerobic induction of pyruvate formate-lyase gene expression is mediated by the ArcA and FNR proteins

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Promoter 7 of the Escherichia coli pfl operon is a major determinant in the anaerobic regulation of expression by ArcA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

FNR-DNA interactions at natural and semi-synthetic promoters.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Identification of functional cis-acting sequences involved in regulation of narK gene expression in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Promoter sequence requirements for Fnr-dependent activation of transcription of the narGHJI operon

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

DNA target sequence and FNR-dependent gene expression

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Multiple regulatory elements for the glpA operon encoding anaerobic glycerol-3-phosphate dehydrogenase and the glpD operon encoding aerobic glycerol-3-phosphate dehydrogenase in Escherichia coli: further characterization of respiratory control

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

FNR-mediated regulation ofhypexpression inEscherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Co-dependent positive regulation of the ansB promoter of Escherichia coli by CRP and the FNR protein: a molecular analysis.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Molecular genetic analysis of an FNR-dependent anaerobically inducible Escherichia coli promoter.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Characterization of the ferrous iron uptake system of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

A seven-gene operon essential for formate-dependent nitrite reduction to ammonia by enteric bacteria.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Adaptive responses to oxygen limitation in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Aerobic and anaerobic regulation of the ubiCA operon, encoding enzymes for the first two committed steps of ubiquinone biosynthesis in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

FNR-mediated oxygen-responsive regulation of the nrdDG operon of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transcriptional regulation of the cydDC operon, encoding a heterodimeric ABC transporter required for assembly of cytochromes c and bd in Escherichia coli K-12: regulation by oxygen and alternative electron acceptors

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Properties of haemolysin E (HlyE) from a pathogenic Escherichia coli avian isolate and studies of HlyE export

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Transcriptional regulation of the moe (molybdate metabolism) operon of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Interplay between three global regulatory proteins mediates oxygen regulation of the Escherichia coli cytochrome d oxidase (cydAB) operon.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Regulation of transcription at the ndh promoter of Escherichia coli by FNR and novel factors

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Repression of in vitro transcription of the Escherichia coli fnr and nar X genes by FNR protein.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Regulation and over-expression of the fnr gene of Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Nitric oxide, nitrite, and Fnr regulation of hmp (flavohemoglobin) gene expression in Escherichia coli K-12.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Characterization of regulatory mutations causing anaerobic derepression of the sodA gene in Escherichia coli K12: cooperation between cis- and trans-acting regulatory loci

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Effect of heme and oxygen availability on hemA gene expression in Escherichia coli: role of the fnr, arcA, and himA gene products

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Involvement of ArcA and Fnr in expression of Escherichia coli thiol peroxidase gene

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

YeiL, the third member of the CRP-FNR family in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M512312200

21 January 2018

Identifiers

10.1074/JBC.M512312200

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 September 2017

ResearchGate publication ID

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