(Q37149974)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23770821%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Bimodal expression of PHO84 is modulated by early termination of antisense transcription (English)

1 reference

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3 March 2020

6

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3 March 2020

author name string

Manuele Castelnuovo

1

1 reference

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3 March 2020

Samir Rahman

2

1 reference

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3 March 2020

Elisa Guffanti

3

1 reference

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3 March 2020

Valentina Infantino

4

1 reference

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3 March 2020

Françoise Stutz

5

1 reference

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3 March 2020

publication date

16 June 2013

1 reference

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Nature Structural & Molecular Biology

3 March 2020

published in

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3 March 2020

volume

20

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3 March 2020

issue

7

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3 March 2020

page(s)

851-858

1 reference

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describes a project that uses

3 March 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4972572/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription

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Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics.

6 September 2017

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Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast

6 September 2017

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Systematic dissection of roles for chromatin regulators in a yeast stress response

6 September 2017

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Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor

6 September 2017

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To the pore and through the pore: a story of mRNA export kinetics

6 September 2017

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Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment

6 September 2017

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Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.

6 September 2017

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Pervasive transcription – Lessons from yeast

6 September 2017

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The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

6 September 2017

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The role of cotranscriptional histone methylations

6 September 2017

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Antisense expression increases gene expression variability and locus interdependency

6 September 2017

1 reference

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Regulated Antisense Transcription Controls Expression of Cell-Type-Specific Genes in Yeast

6 September 2017

1 reference

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Intergenic transcription causes repression by directing nucleosome assembly

6 September 2017

1 reference

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Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

6 September 2017

1 reference

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Analyzing mRNA expression using single mRNA resolution fluorescent in situ hybridization

6 September 2017

1 reference

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The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

The many pathways of RNA degradation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Bidirectional promoters generate pervasive transcription in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Single-RNA counting reveals alternative modes of gene expression in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Imaging individual mRNA molecules using multiple singly labeled probes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Chromatin decouples promoter threshold from dynamic range

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

A high-resolution map of transcription in the yeast genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Yeast Trf5p is a nuclear poly(A) polymerase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

A new yeast poly(A) polymerase complex involved in RNA quality control

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Precision and functional specificity in mRNA decay

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Roles of phosphorylation sites in regulating activity of the transcription factor Pho4.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Dissecting the regulatory circuitry of a eukaryotic genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Visualization of Single RNA Transcripts in Situ

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Gene-specific RNA polymerase II phosphorylation and the CTD code

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Antisense transcription controls cell fate in Saccharomyces cerevisiae

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

A pre-initiation complex at the 3′-end of genes drives antisense transcription independent of divergent sense transcription

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4972572

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2598

31 March 2020

Identifiers

DOI

10.1038/NSMB.2598

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23770821%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23770821%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

23770821

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23770821%20AND%20SRC:MED&resulttype=core&format=json