(Q37017245)

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Analysis of phage Mu DNA transposition by whole-genome Escherichia coli tiling arrays reveals a complex relationship to distribution of target selection protein B, transcription and chromosome architectural elements.

scientific article published on September 2011

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Analysis of phage Mu DNA transposition by whole-genome Escherichia coli tiling arrays reveals a complex relationship to distribution of target selection protein B, transcription and chromosome architectural elements (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Escherichia coli

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

based on heuristic

inferred from title

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Jun Ge

1

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11 February 2020

Hong Cui

3

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Europe PubMed Central

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11 February 2020

Lei Shang

4

1 reference

Europe PubMed Central

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11 February 2020

Rasika M Harshey

5

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11 February 2020

publication date

1 September 2011

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11 February 2020

Journal of Biosciences

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11 February 2020

36

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11 February 2020

4

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11 February 2020

587-601

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11 February 2020

Immunity of replicating Mu to self-integration: a novel mechanism employing MuB protein.

1 reference

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29 September 2017

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

1 reference

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29 September 2017

High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe

1 reference

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29 September 2017

Protein occupancy landscape of a bacterial genome

1 reference

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29 September 2017

Integration target site selection by a resurrected human endogenous retrovirus

1 reference

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29 September 2017

The take and give between retrotransposable elements and their hosts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Congruence of in vivo and in vitro insertion patterns in hot E. coli gene targets of transposable element Mu: opposing roles of MuB in target capture and integration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

DNA transposition target immunity and the determinants of the MuB distribution patterns on DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Selection of target sites for mobile DNA integration in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Retroviral DNA integration: viral and cellular determinants of target-site selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Chromosomal integration mechanism of infecting mu virion DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Organization of supercoil domains and their reorganization by transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

A-tract clusters may facilitate DNA packaging in bacterial nucleoid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficiencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Spatial arrangement and macrodomain organization of bacterial chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Measuring chromosome dynamics on different time scales using resolvases with varying half-lives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Integration target site selection for retroviruses and transposable elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Microarray analysis of transposition targets in Escherichia coli: the impact of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Regulation of gene expression by histone-like proteins in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Genome organisation and chromatin structure in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

High-density microarray-mediated gene expression profiling of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Genome-wide location and function of DNA binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Mechanisms of separation of the complementary strands of DNA during replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Dynamic organization of chromosomal DNA in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Engineering of bacterial ribosomes: replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Isolation and Characterization of Spermidine Nucleoids fromEscherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Action at a distance: DNA-looping and initiation of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Control of rRNA transcription in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Steady-state kinetic analysis of ATP hydrolysis by the B protein of bacteriophage mu. Involvement of protein oligomerization in the ATPase cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Influence of insertions on packaging of host sequences covalently linked to bacteriophage Mu DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

29 September 2017

Transposition into replicating DNA occurs through interaction with the processivity factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

27 June 2018

Bacteriophage Mu targets the trinucleotide sequence CGG.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

27 June 2018

Target site selection in transposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

27 June 2018

Curved helix segments can uniquely orient the topology of supertwisted DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

27 June 2018

DNA dynamics vary according to macrodomain topography in the E. coli chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

4 September 2018

Visualizing the assembly and disassembly mechanisms of the MuB transposition targeting complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3712764

4 September 2018

DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA ring closure mediated by protein HU

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Target site selection in transposition of phage Mu

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Importance of the conserved CA dinucleotide at Mu termini

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Target immunity of Mu transposition reflects a differential distribution of Mu B protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence Elements Responsible for DNA Curvature

1 reference

https://pubmed.ncbi.nlm.nih.gov/21857106

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S12038-011-9108-Z

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21857106%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

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