(Q35884045)

10 August 2017

Mutations to Less-Preferred Synonymous Codons in a Highly Expressed Gene of Escherichia coli: Fitness and Epistatic Interactions (English)

1 reference

10 August 2017

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David J Hauber

1

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10 August 2017

Dennis W Grogan

series ordinal

2

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10 August 2017

Ronald W DeBry

series ordinal

3

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10 August 2017

language of work or name

English

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publication date

4 January 2016

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10 August 2017

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10 August 2017

11

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10 August 2017

1

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10 August 2017

e0146375

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Creative Commons Attribution 4.0 International

10 August 2017

start time

4 January 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

A major controversy in codon-anticodon adaptation resolved by a new codon usage index

1 reference

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A comprehensive, high-resolution map of a gene's fitness landscape

11 July 2018

1 reference

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Strong purifying selection at synonymous sites in D. melanogaster

11 July 2018

1 reference

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Fitness costs of synonymous mutations in the rpsT gene can be compensated by restoring mRNA base pairing.

11 July 2018

1 reference

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Coding-sequence determinants of gene expression in Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Concentration of biochemical mutants of bacteria with penicillin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Maintenance of Genetic Variability under the Joint Effect of Mutation, Selection and Random Drift.

11 July 2018

1 reference

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Mfold web server for nucleic acid folding and hybridization prediction

11 July 2018

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Codon bias evolution in Drosophila. Population genetics of mutation-selection drift

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon bias in Escherichia coli: the influence of codon context on mutation and selection.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Selection intensity for codon bias and the effective population size of Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon usage: mutational bias, translational selection, or both?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon catalog usage is a genome strategy modulated for gene expressivity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon usage in bacteria: correlation with gene expressivity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?

11 July 2018

1 reference

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11 July 2018

Non-Darwinian Evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon usage and tRNA content in unicellular and multicellular organisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

11 July 2018

1 reference

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An evolutionary perspective on synonymous codon usage in unicellular organisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Codon usage and gene expression level in Dictyostelium discoideum: highly expressed genes do 'prefer' optimal codons

11 July 2018

1 reference

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New method for generating deletions and gene replacements in Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Coevolution of codon usage and transfer RNA abundance

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

The selection-mutation-drift theory of synonymous codon usage

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Identification of a gene for the alpha-subunit of RNA polymerase at the str-spc region of the Escherichia coli chromosome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Bactericidal action of β-lactam antibiotics on Escherichia coil with particular reference to ampicillin and amoxycillin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Levels of major proteins of Escherichia coli during growth at different temperatures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Mutational robustness of ribosomal protein genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0146375

Multiplicative versus additive selection in relation to genome evolution: a simulation study

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4699635

Effect of chloramphenicol on protein synthesis in cell-free preparations of Escherichia coli

24 September 2018

1 reference

12 December 2020

Isolation of biochemically deficient mutants of bacteria by penicillin

1 reference

12 December 2020

EXPERIMENTAL STUDIES OF PLEIOTROPY AND EPISTASIS IN ESCHERICHIA COLI. I. VARIATION IN COMPETITIVE FITNESS AMONG MUTANTS RESISTANT TO VIRUS T4.

1 reference

12 December 2020

Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles

1 reference

12 December 2020

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0146375

Identifiers

DOI

1 reference

10 August 2017

0 references

1 reference

10 August 2017

PubMed publication ID

26727272

1 reference