(Q35591050)

9 August 2017

title

Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA. (English)

1 reference

9 August 2017

M O'Connor

1

1 reference

9 August 2017

T Asai

series ordinal

2

1 reference

9 August 2017

C L Squires

series ordinal

3

1 reference

9 August 2017

A E Dahlberg

series ordinal

4

1 reference

9 August 2017

language of work or name

English

0 references

publication date

1 August 1999

1 reference

Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

published in

1 reference

9 August 2017

volume

96

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9 August 2017

issue

16

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9 August 2017

page(s)

8973-8978

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An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria

9 August 2017

cites work

1 reference

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Translation of the leaderless Caulobacter dnaX mRNA

27 July 2018

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Functional importance of RNA interactions in selection of translation initiation codons

27 July 2018

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Genetic analysis of the Shine-Dalgarno interaction: selection of alternative functional mRNA-rRNA combinations

27 July 2018

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Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs

27 July 2018

1 reference

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Site-directed mutagenesis in vitro by megaprimer PCR.

27 July 2018

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The downstream box: an efficient and independent translation initiation signal in Escherichia coli

27 July 2018

1 reference

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Footprinting mRNA-ribosome complexes with chemical probes

27 July 2018

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Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data

27 July 2018

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Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

27 July 2018

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Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element

27 July 2018

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A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome

27 July 2018

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Codon pair utilization biases influence translational elongation step times

27 July 2018

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Rapid and efficient site-specific mutagenesis without phenotypic selection

27 July 2018

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Mutants with base changes at the 3'-end of the 16S RNA from Escherichia coli. Construction, expression and functional analysis.

27 July 2018

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Mutations within the decoding site of Escherichia coli 16S rRNA: growth rate impairment, lethality and intragenic suppression

27 July 2018

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A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli.

27 July 2018

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An additional ribosome-binding site on mRNA of highly expressed genes and a bifunctional site on the colicin fragment of 16S rRNA from Escherichia coli: important determinants of the efficiency of translation-initiation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

A translational enhancer derived from tobacco mosaic virus is functionally equivalent to a Shine-Dalgarno sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Initiation of mRNA translation in prokaryotes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

The initiation of translation in E. coli: apparent base pairing between the 16srRNA and downstream sequences of the mRNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational errors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Interplay of two cis-acting mRNA regions in translational control of sigma 32 synthesis during the heat shock response of Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Translation initiation in Escherichia coli: old and new questions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471 –1480 in 16S ribosomal RNA affects expression ofglnS

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Interdependence of translation, transcription and mRNA degradation in the lacZ gene

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Translation of the prophage lambda cl transcript

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

A ribosomal ambiguity mutation in the 530 loop of E. coli 16S rRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Translation initiation in Escherichia coli: sequences within the ribosome-binding site

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Determinant of cistron specificity in bacterial ribosomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

The importance of base pairing in the penultimate stem of Escherichia coli 16S rRNA for ribosomal subunit association

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

The rnhB gene encoding RNase HII of Streptococcus pneumoniae and evidence of conserved motifs in eucaryotic genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

The path of mRNA through the bacterial ribosome: a site-directed crosslinking study using new photoreactive derivatives of guanosine and uridine

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Variety of nonsense suppressor phenotypes associated with mutational changes at conserved sites in Escherichia coli ribosomal RNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

New versatile plasmid vectors for expression of hybrid proteins coded by a cloned gene fused to lacZ gene sequences encoding an enzymatically active carboxy-terminal portion of beta-galactosidase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17717

Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5' untranslated leader

26 September 2018

1 reference

12 December 2020

Deletion analysis of cspA of Escherichia coli: requirement of the AT‐rich UP element for cspA transcription and the downstream box in the coding region for its cold shock induction

1 reference

12 December 2020

Genetic selection of rRNA mutations

1 reference

12 December 2020

High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: comparison of natural and unnatural binding sites

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.96.16.8973

1 reference

9 August 2017

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9 August 2017

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