(Q35110872)

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Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity.

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9 March 2020

Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity (English)

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9 March 2020

Escherichia coli O157:H7 str. Sakai

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Chawalit Kocharunchitt

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9 March 2020

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9 March 2020

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9 March 2020

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9 March 2020

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Thea King

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3 March 2014

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9 March 2020

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9 March 2020

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9 March 2020

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9 March 2020

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9 March 2020

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3 March 2014

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Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift.

1 reference

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

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9 July 2018

ArrayExpress update--trends in database growth and links to data analysis tools

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9 July 2018

Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Lag phase of Salmonella enterica under osmotic stress conditions

1 reference

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9 July 2018

Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

1 reference

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9 July 2018

Comparative transcriptomic and proteomic profiling of industrial wine yeast strains

1 reference

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9 July 2018

Growth rate-dependent global effects on gene expression in bacteria

1 reference

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9 July 2018

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

1 reference

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9 July 2018

Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase

1 reference

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Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions

1 reference

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9 July 2018

Characterization of the Cpx regulon in Escherichia coli strain MC4100.

1 reference

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9 July 2018

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

1 reference

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9 July 2018

Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses

1 reference

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9 July 2018

Transcription profiling of the stringent response in Escherichia coli

1 reference

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9 July 2018

Time-dependent proteome alterations under osmotic stress during aerobic and anaerobic growth in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Characterization of DNA damage in yeast apoptosis induced by hydrogen peroxide, acetic acid, and hyperosmotic shock.

1 reference

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9 July 2018

Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress

1 reference

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9 July 2018

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments

1 reference

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9 July 2018

A role for exopolysaccharides in the protection of microorganisms from desiccation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Conserved and variable functions of the sigmaE stress response in related genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Role of RcsF in signaling to the Rcs phosphorelay pathway in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Proteome response of Escherichia coli fed-batch culture to temperature downshift

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

T-profiler: scoring the activity of predefined groups of genes using gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Stress and how bacteria cope with death and survival.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Java Treeview--extensible visualization of microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Regulation of the Escherichia coli sigma-dependent envelope stress response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

TANDEM: matching proteins with tandem mass spectra

1 reference

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9 July 2018

Open source clustering software

1 reference

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9 July 2018

A statistical model for identifying proteins by tandem mass spectrometry

1 reference

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9 July 2018

Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems

1 reference

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9 July 2018

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

1 reference

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9 July 2018

Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays

1 reference

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9 July 2018

Discordant protein and mRNA expression in lung adenocarcinomas

1 reference

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9 July 2018

Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence.

1 reference

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9 July 2018

Osmoregulation and its importance to food-borne microorganisms.

1 reference

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9 July 2018

The effect of inoculum size on the lag phase of Listeria monocytogenes.

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9 July 2018

DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

1 reference

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9 July 2018

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3940904

9 July 2018

Exopolysaccharide production is required for development of Escherichia coli K-12 biofilm architecture

1 reference

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9 July 2018

Correlation of enterohemorrhagic Escherichia coli O157 prevalence in feces, hides, and carcasses of beef cattle during processing

1 reference

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9 July 2018

Outer membrane permeability barrier in Escherichia coli mutants that are defective in the late acyltransferases of lipid A biosynthesis

1 reference

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9 July 2018

Osmosensing by bacteria: signals and membrane-based sensors

1 reference

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9 July 2018

Correlation between protein and mRNA abundance in yeast

1 reference

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9 July 2018

From acids to osmZ: multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli.

1 reference

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9 July 2018

Osmotic shock induction of capsule synthesis in Escherichia coli K-12

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Cell division inhibitors SulA and MinCD prevent formation of the FtsZ ring

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Excess histidine enzymes cause AICAR-independent filamentation in Escherichia coli.

1 reference

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The role of capsular polysaccharide K21b of Klebsiella and of the structurally related colanic-acid polysaccharide of Escherichia coli in resistance to phagocytosis and serum killing.

1 reference

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Cloning of the fic-1 gene involved in cell filamentation induced by cyclic AMP and construction of a delta fic Escherichia coli strain

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9 July 2018

Physiological and genetic responses of bacteria to osmotic stress

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9 July 2018

Adaptation of Escherichia coli to elevated temperatures: the metA gene product is a heat shock protein.

1 reference

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9 July 2018

Role of heat shock protein DnaK in osmotic adaptation of Escherichia coli

1 reference

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The lipid A biosynthesis mutation lpxA2 of Escherichia coli results in drastic antibiotic supersusceptibility

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Introduction to Injury and Repair of Microbial Cells

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9 July 2018

The effect of abrupt shifts in temperature on the lag phase duration of Escherichia coli and Klebsiella oxytoca.

1 reference

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21 January 2018

Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090422

21 January 2018

Viable count estimates of lag time responses for Salmonella typhimurium M48 subjected to abrupt osmotic shifts.

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21 January 2018

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

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21 January 2018

Proteomics: theoretical and experimental considerations.

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21 January 2018

Dynamical analysis of gene networks requires both mRNA and protein expression information

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21 January 2018

Absence of insertions among spontaneous mutants of Salmonella typhimurium

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21 January 2018

In vivo aggregation of a single enzyme limits growth of Escherichia coli at elevated temperatures

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21 January 2018

Abnormal growth of polyamine-deficient Escherichia coli mutant is partially caused by oxidative stress-induced damage

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090422

21 January 2018

Involvement of phospholipids in resistance and adaptation of Escherichia coli to acid conditions and to long-term survival

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090422

21 January 2018

Cyclopropane fatty acids improve Escherichia coli survival in acidified minimal media by reducing membrane permeability to H+ and enhanced ability to extrude H+.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0090422

21 January 2018

Acid habituation of Escherichia coli and the potential role of cyclopropane fatty acids in low pH tolerance.

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21 January 2018

Modification of lipopolysaccharide with colanic acid (M-antigen) repeats in Escherichia coli.

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21 January 2018

Protective effect of exopolysaccharide colanic acid of Escherichia coli O157:H7 to osmotic and oxidative stress

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21 January 2018

RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli.

1 reference

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21 January 2018

Role of colanic acid exopolysaccharide in the survival of enterohaemorrhagic Escherichia coli O157:H7 in simulated gastrointestinal fluids.

1 reference

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27 September 2018

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27 September 2018

Prevalence and numbers of Escherichia coli O157:H7 in minced beef and beef burgers from butcher shops and supermarkets in the Republic of Ireland

1 reference

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21 January 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

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21 January 2018

ClpB and HtpG facilitate de novo protein folding in stressed Escherichia coli cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Membranes as a target for stress adaptation

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Outbreaks of enterohaemorrhagic Escherichia coli O157:H7 infection by two different genotype strains in Japan, 1996

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immediate and transient inhibition of the respiration of Escherichia coli under hyperosmotic shock

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effect of the growth environment on the lag phase of Listeria monocytogenes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hyperosmotic shock induces the sigma32 and sigmaE stress regulons of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effect of abrupt osmotic shifts on the lag phase duration of foodborne bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fatty acid membrane composition and activation of glycine-betaine transport in Lactococcus lactis subjected to osmotic stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Membrane cyclopropane fatty acid content is a major factor in acid resistance of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modelling the effects of temperature, water activity, pH and lactic acid concentration on the growth rate of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/24594867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0090422

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24594867%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

2014PLoSO...990422K

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24594867%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24594867%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

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