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ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
title
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
main subject
database
0 references
sequence alignment
1 reference
based on heuristic
inferred from title
author
Torbjørn Rognes
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
Torbjørn Rognes
series ordinal
1
object named as
T Rognes
1 reference
stated in
Europe PubMed Central
PubMed publication ID
11266569
retrieved
6 August 2017
language of work or name
English
0 references
publication date
1 April 2001
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
volume
29
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
issue
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
page(s)
1647-1652
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
cites work
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Predicting protein structure using only sequence information.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Combining sensitive database searches with multiple intermediates to detect distant homologues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Using video-oriented instructions to speed up sequence comparison
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
BioSCAN: a network sharable computational resource for searching biosequence databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Local alignment statistics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Applications and statistics for multiple high-scoring segments in molecular sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
SCOP: a structural classification of proteins database for the investigation of sequences and structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Identification of common molecular subsequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Improved tools for biological sequence comparison
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Amino acid substitution matrices from protein blocks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
8 July 2018
Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
27 September 2018
SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
27 September 2018
Parallel hardware for sequence comparison and alignment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
27 September 2018
An improved algorithm for matching biological sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31274
retrieved
27 September 2018
Accurate formula for P-values of gapped local sequence and profile alignments
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/11266569
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/29.7.1647
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
PMC publication ID
31274
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
PubMed publication ID
11266569
1 reference
stated in
Europe PubMed Central
PMC publication ID
31274
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11266569%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 November 2019
ResearchGate publication ID
12065605
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