(Q34787866)

4 August 2017

title

Genome evolution reveals biochemical networks and functional modules (English)

1 reference

4 August 2017

7

1 reference

4 August 2017

Sophia Tsoka

3

0 references

Francesca D Ciccarelli

object named as

Francesca D Ciccarelli

series ordinal

4

0 references

Christian von Mering

object named as

Christian von Mering

series ordinal

1

0 references

Christos Ouzounis

series ordinal

6

object named as

Christos A Ouzounis

1 reference

4 August 2017

2

Evgeny M Zdobnov

1 reference

4 August 2017

Jose B Pereira-Leal

5

1 reference

4 August 2017

language of work or name

English

0 references

publication date

12 December 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

number of pages

6

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based on heuristic

inferred from page(s)

published in

1 reference

4 August 2017

volume

100

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4 August 2017

issue

26

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4 August 2017

page(s)

15428-15433

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Missing genes in metabolic pathways: a comparative genomics approach

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Molecular evolution meets the genomics revolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

STRING: a database of predicted functional associations between proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Hierarchical organization of modularity in metabolic networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Shared strategies in gene organization among prokaryotes and eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The identification of functional modules from the genomic association of genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

An efficient algorithm for large-scale detection of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Predictome: a database of putative functional links between proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

8 July 2018

1 reference

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Identifying regulatory networks by combinatorial analysis of promoter elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Horizontal gene transfer in prokaryotes: quantification and classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Interplay between an AAA module and an integrin I domain may regulate the function of magnesium chelatase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The COG database: new developments in phylogenetic classification of proteins from complete genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Gene context conservation of a higher order than operons.

8 July 2018

1 reference

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Lineage-specific loss and divergence of functionally linked genes in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Recent developments and future directions in computational genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Protein function in the post-genomic era.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Computational genetics: finding protein function by nonhomology methods.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Gene ontology: tool for the unification of biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

From molecular to modular cell biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Protein interaction maps for complete genomes based on gene fusion events

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

A combined algorithm for genome-wide prediction of protein function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Detecting protein function and protein-protein interactions from genome sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The use of gene clusters to infer functional coupling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Predicting function: from genes to genomes and back

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Conservation of gene order: a fingerprint of proteins that physically interact

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Selfish operons and speciation by gene transfer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

The complete genome sequence of Escherichia coli K-12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Cloning and characterization of spoVR, a gene from Bacillus subtilis involved in spore cortex formation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Functions of the gene products of Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

dfp Gene of Escherichia coli K-12, a locus affecting DNA synthesis, codes for a flavoprotein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Energy and calcium ion dependence of proteolysis during sporulation of Bacillus subtilis cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307584

Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136809100

The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136809100

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136809100

21 January 2018

Do you dig my groove?

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136809100

Functional links between proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2136809100

21 January 2018

Identifiers

DOI

10.1073/PNAS.2136809100

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference