(Q34548866)

3 August 2017

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title

Rules for modeling signal-transduction systems (English)

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3 August 2017

2

James R Faeder

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3 August 2017

Michael Hucka

5

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author name string

William S Hlavacek

1

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3 August 2017

Michael L Blinov

3

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3 August 2017

Richard G Posner

4

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3 August 2017

Walter Fontana

6

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3 August 2017

publication date

18 July 2006

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Science's STKE : signal transduction knowledge environment

3 August 2017

published in

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3 August 2017

volume

2006

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3 August 2017

issue

344

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3 August 2017

page(s)

re6

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3 August 2017

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The complexity of complexes in signal transduction.

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Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1

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Three-dimensional structure of a complex between the death domains of Pelle and Tube

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Investigation of early events in Fc epsilon RI-mediated signaling using a detailed mathematical model

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Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

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Exact stochastic simulation of coupled chemical reactions

21 January 2018

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Agonist/endogenous peptide-MHC heterodimers drive T cell activation and sensitivity

21 January 2018

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An algebra of dimerization and its implications for G-protein coupled receptor signaling

21 January 2018

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On the cross-regulation of protein tyrosine phosphatases and receptor tyrosine kinases in intracellular signaling.

21 January 2018

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An enzyme mechanism language for the mathematical modeling of metabolic pathways

21 January 2018

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Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling.

21 January 2018

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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

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EGFR activation coupled to inhibition of tyrosine phosphatases causes lateral signal propagation

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Anticancer effects of ZD6474, a VEGF receptor tyrosine kinase inhibitor, in gefitinib ("Iressa")-sensitive and resistant xenograft models.

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A graph-based toy model of chemistry

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Autocatalytic replication of polymers

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Signaling through receptors and scaffolds: independent interactions reduce combinatorial complexity

21 January 2018

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Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains.

21 January 2018

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A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

21 January 2018

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Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli

21 January 2018

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Approximate accelerated stochastic simulation of chemically reacting systems

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21 January 2018

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Application of a stochastic name-passing calculus to representation and simulation of molecular processes

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Modelling the dynamics of biosystems.

21 January 2018

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Concurrency in leukocyte vascular recognition: developing the tools for a predictive computer model

21 January 2018

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Minimum information requested in the annotation of biochemical models (MIRIAM)

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BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

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Systems biology markup language: Level 2 and beyond

21 January 2018

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Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

21 January 2018

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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

21 January 2018

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A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

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Literature mining for the biologist: from information retrieval to biological discovery

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Inferring protein domain interactions from databases of interacting proteins

21 January 2018

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Molecular interaction maps--a diagrammatic graphical language for bioregulatory networks

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Molecular interaction maps of bioregulatory networks: a general rubric for systems biology

21 January 2018

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CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle.

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Artificial chemistries--a review

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Local rule-based theory of virus shell assembly

21 January 2018

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Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics

21 January 2018

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Synthetic modular systems--reverse engineering of signal transduction

21 January 2018

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 January 2018

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7 July 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/BIOINFORMATICS/BTG015

Stochastic generator of chemical structure. 3. Reaction network generation

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7 December 2024

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Identifiers

DOI

10.1126/STKE.3442006RE6

1 reference

3 August 2017

1 reference