(Q34324226)

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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

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1 August 2017

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza (English)

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Wenming Wang

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David J. Mackill

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David MacKill

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Phillip J SanMiguel

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Phillip SanMiguel

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Nicholas B. Sisneros

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Nicholas B Sisneros

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Meizhong Luo

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Carol Soderlund

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Carol Soderlund

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Kiran Rao

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Jayson Talag

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Jason G Walling

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Navdeep Gill

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Jetty S S Ammiraju

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José L Goicoechea

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Dave Kudrna

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Christopher Mueller

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HyeRan Kim

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Barbara Blackmon

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Eric Fang

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Jeffery B Tomkins

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Darshan Brar

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Susan McCouch

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Nori Kurata

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Georgina Lambert

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David W Galbraith

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K Arumuganathan

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Yeisoo Yu

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Scott Jackson

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publication date

12 December 2005

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Genome Research

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1

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1 August 2017

140-147

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1 August 2017

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The map-based sequence of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence composition and genome organization of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Rapid recent growth and divergence of rice nuclear genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

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6 July 2018

An Improved Method for Plant BAC Library Construction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Construction and characterization of a half million clone BAC library of durum wheat ( Triticum turgidum ssp. durum).

1 reference

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6 July 2018

Genome-wide intraspecific DNA-sequence variations in rice

1 reference

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6 July 2018

Construction of a BAC library and its application to the identification of simple sequence repeats in peach [ Prunus persica (L.) Batsch].

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

An integrated physical and genetic map of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The colinearity of the Sh2/A1 orthologous region in rice, sorghum and maize is interrupted and accompanied by genome expansion in the triticeae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Contigs built with fingerprints, markers, and FPC V4.7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Alien introgression in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Origin, dispersal, cultivation and variation of rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

6 July 2018

Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Sequence and analysis of rice chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356138

28 October 2018

Sources and predictors of resolvable indel polymorphism assessed using rice as a model

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

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based on heuristic

inferred from PubMed ID database lookup

Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-specific repetitive sequences in the genus Oryza

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative RFLP mapping of an allotetraploid wild rice species (Oryza latifolia) and cultivated rice (O. sativa)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16344555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1101/GR.3766306

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Europe PubMed Central

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1 August 2017

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1 August 2017

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1 August 2017

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