(Q34177716)

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Deuterium/hydrogen exchange factors measured by solution nuclear magnetic resonance spectroscopy as indicators of the structure and topology of membrane proteins

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Europe PubMed Central

PubMed publication ID

31 July 2017

Deuterium/hydrogen exchange factors measured by solution nuclear magnetic resonance spectroscopy as indicators of the structure and topology of membrane proteins (English)

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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membrane protein

1 reference

based on heuristic

inferred from title

Ana Carolina Zeri

2

object named as

Ana Carolina Zeri

0 references

Stanley J Opella

4

object named as

Stanley J Opella

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Gianluigi Veglia

1

object named as

Gianluigi Veglia

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

author name string

Ana Carolina Zeri

2

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Che Ma

3

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Europe PubMed Central

PubMed publication ID

31 July 2017

language of work or name

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publication date

1 April 2002

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Biophysical Journal

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Europe PubMed Central

PubMed publication ID

31 July 2017

82

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Europe PubMed Central

PubMed publication ID

31 July 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

2176-2183

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

Multiple alignment of complete sequences (MACS) in the post-genomic era.

1 reference

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Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor

1 reference

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TM Finder: a prediction program for transmembrane protein segments using a combination of hydrophobicity and nonpolar phase helicity scales

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5 July 2018

Prediction of membrane protein types based on the hydrophobic index of amino acids

1 reference

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A novel computational method for predicting the transmembrane structure of G-protein coupled receptors: application to human C5aR and C3aR.

1 reference

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Structure of bacteriorhodopsin at 1.55 A resolution

1 reference

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5 July 2018

The hydrogen exchange core and protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Membrane protein folding and stability: physical principles

1 reference

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5 July 2018

High-precision measurement of hydrogen bond lengths in proteins by nuclear magnetic resonance methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Hydrogen bonding and equilibrium protium-deuterium fractionation factors in the immunoglobulin G binding domain of protein G.

1 reference

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Defining the transmembrane helix of M2 protein from influenza A by molecular dynamics simulations in a lipid bilayer

1 reference

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5 July 2018

Solid-state NMR and hydrogen-deuterium exchange in a bilayer-solubilized peptide: structural and mechanistic implications

1 reference

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5 July 2018

Fractionation factors and activation energies for exchange of the low barrier hydrogen bonding proton in peptidyl trifluoromethyl ketone complexes of chymotrypsin

1 reference

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5 July 2018

Folding of beta-sheet membrane proteins: a hydrophobic hexapeptide model

1 reference

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5 July 2018

Hydrogen Bonding in Helical Polypeptides from Molecular Dynamics Simulations and Amide Hydrogen Exchange Analysis: Alamethicin and Melittin in Methanol

1 reference

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5 July 2018

NMR Studies of the Role of Hydrogen Bonding in the Mechanism of Triosephosphate Isomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

NMR and membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

fd coat protein structure in membrane environments: structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix

1 reference

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5 July 2018

Two-dimensional 1H NMR experiments show that the 23-residue magainin antibiotic peptide is an alpha-helix in dodecylphosphocholine micelles, sodium dodecylsulfate micelles, and trifluoroethanol/water solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Two-dimensional 1H-NMR of transmembrane peptides from Escherichia coli phosphatidylglycerophosphate synthase in micelles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Hydrogen bond stabilities in membrane-reconstituted alamethicin from amide-resolved hydrogen-exchange measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Three-dimensional solid-state NMR spectroscopy of a peptide oriented in membrane bilayers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

fd coat protein structure in membrane environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Methods to study membrane protein structure in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Hydrogen exchange and structural dynamics of proteins and nucleic acids

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Hydrogen exchange kinetics in a membrane protein determined by 15N NMR spectroscopy: use of the INEPT experiment to follow individual amides in detergent-solubilized M13 coat protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

Measurement of the exchange rates of rapidly exchanging amide protons: Application to the study of calmodulin and its complex with a myosin light chain kinase fragment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

5 July 2018

A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

28 October 2018

Topology of membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

28 October 2018

Modulating dipoles for structure-function correlations in the gramicidin A channel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

28 October 2018

Hydrophobic interactions of peptides with membrane interfaces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

28 October 2018

Estimation of structural similarity of membrane proteins by hydropathy profile alignment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302011

28 October 2018

Hydrogen bonding and equilibrium isotope enrichment in histidine-containing proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Identification of the Hydrogen Bonding Network in a Protein by Scalar Couplings

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

NMR-Based amide hydrogen-deuterium exchange measurements for complex membrane proteins: development and critical evaluation

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Amide-resolved hydrogen-deuterium exchange measurements from membrane-reconstituted polypeptides using exchange trapping and semiselective two-dimensional NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Hydrogen bonding in proteins as studied by amide hydrogen D/H fractionation factors: application to staphylococcal nuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Three-dimensional solid-state NMR spectroscopy is essential for resolution of resonances from in-plane residues in uniformly (15)N-labeled helical membrane proteins in oriented lipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Structure and dynamics of a detergent-solubilized membrane protein: measurement of amide hydrogen exchange rates in M13 coat protein by 1H NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Membrane protein folding and oligomerization: the two-stage model

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Structure and dynamics of bacteriophage IKe major coat protein in MPG micelles by solution NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Magainins, a class of antimicrobial peptides from Xenopus skin: isolation, characterization of two active forms, and partial cDNA sequence of a precursor

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Peptide models of helical hydrophobic transmembrane segments of membrane proteins. 1. Studies of the conformation, intrabilayer orientation, and amide hydrogen exchangeability of Ac-K2-(LA)12-K2-amide

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975564-1

7 January 2021

Hydrogen exchange in the lipid bilayer-bound gramicidin channel

1 reference

https://pubmed.ncbi.nlm.nih.gov/11916873

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/S0006-3495(02)75564-1

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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