(Q34171591)

31 July 2017

title

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase (English)

1 reference

31 July 2017

0 references

9

P K Hansma

1 reference

31 July 2017

M Guthold

1

1 reference

31 July 2017

X Zhu

2

1 reference

31 July 2017

C Rivetti

3

1 reference

31 July 2017

G Yang

4

1 reference

31 July 2017

N H Thomson

5

1 reference

31 July 2017

S Kasas

6

1 reference

31 July 2017

H G Hansma

7

1 reference

31 July 2017

B Smith

8

1 reference

31 July 2017

C Bustamante

10

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 October 1999

1 reference

31 July 2017

number of pages

11

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

31 July 2017

volume

77

1 reference

31 July 2017

issue

4

1 reference

31 July 2017

page(s)

2284-2294

1 reference

Facilitated target location on DNA by individual Escherichia coli RNA polymerase molecules observed with the scanning force microscope operating in liquid.

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Single-molecule imaging of RNA polymerase-DNA interactions in real time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Measurement of local viscoelasticity and forces in living cells by magnetic tweezers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Local measurements of viscoelastic parameters of adherent cell surfaces by magnetic bead microrheometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Force Generation in RNA Polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Basic mechanisms of transcript elongation and its regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

RNA polymerase slides home: pause and termination site recognition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Visualization of supercoiled DNA with atomic force microscopy in situ

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

DNA binding to mica correlates with cationic radius: assay by atomic force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Atomic force microscopy of long DNA: imaging in air and under water

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Atomic force microscopy of DNA in aqueous solutions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Visualization of single molecules of RNA polymerase sliding along DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Discontinuous mechanism of transcription elongation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Motion and enzymatic degradation of DNA in the atomic force microscope.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Effect of several metal ions on misincorporation during transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Protein-nucleic acid interactions in transcription: a molecular analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

The lac repressor-operator interaction. 3. Kinetic studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Ribonucleic acid chain elongation by Escherichia coli ribonucleic acid polymerase. I. Isolation of ternary complexes and the kinetics of elongation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Promoter search by Escherichia coli RNA polymerase on a circular DNA template

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase: a mechanism to facilitate promoter location

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Imaging crystals, polymers, and processes in water with the atomic force microscope

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Transcription by single molecules of RNA polymerase observed by light microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Substrate preparation for reliable imaging of DNA molecules with the scanning force microscope.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Circular DNA molecules imaged in air by scanning force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Atomic force microscopy for high-resolution imaging in cell biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Force and velocity measured for single molecules of RNA polymerase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Escherichia coli RNA polymerase activity observed using atomic force microscopy

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Inhibition of transcription initiation by lac repressor.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Initiation of DNA-dependent RNA synthesis and the effect of heparin on RNA polymerase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300507

Surface Studies by Scanning Tunneling Microscopy

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Biochemical and structural applications of scanning force microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Scanning Force Microscopy in Biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Scanning force microscopy of nucleic acids and nucleoprotein assemblies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Electron microscopic studies of the binding of Escherichia coli RNA polymerase to DNA. I. Characterization of the non-specific interactions of holoenzyme with a restriction fragment of bacteriophage T7 DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Atomic force microscopy imaging of double stranded DNA and RNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Tapping mode atomic force microscopy in liquid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Mechanism of intrinsic transcription termination and antitermination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Transcription against an applied force

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977067-0

Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10512846

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(99)77067-0

1 reference

31 July 2017

1 reference

31 July 2017

1 reference