(Q33659611)

28 July 2017

title

Species-specific supercoil dynamics of the bacterial nucleoid (English)

1 reference

28 July 2017

N Patrick Higgins

1

1 reference

28 July 2017

publication date

20 July 2016

1 reference

28 July 2017

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28 July 2017

volume

8

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28 July 2017

issue

Suppl 1

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28 July 2017

page(s)

113-121

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The Selective Advantage of Synonymous Codon Usage Bias in Salmonella

28 July 2017

cites work

1 reference

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Topological Behavior of Plasmid DNA

14 July 2018

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E. coli Gyrase Fails to Negatively Supercoil Diaminopurine-Substituted DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

RNA polymerase: chromosome domain boundary maker and regulator of supercoil density

14 July 2018

1 reference

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The bacterial nucleoid: nature, dynamics and sister segregation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Spatial organization of transcription machinery and its segregation from the replisome in fast-growing bacterial cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Mechanism of transcriptional bursting in bacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

The Structure of DNA-Bound Human Topoisomerase II Alpha: Conformational Mechanisms for Coordinating Inter-Subunit Interactions with DNA Cleavage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Mechanisms for defining supercoiling set point of DNA gyrase orthologs: I. A nonconserved acidic C-terminal tail modulates Escherichia coli gyrase activity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Mechanisms for Defining Supercoiling Set Point of DNA Gyrase Orthologs: II. THE SHAPE OF THE GyrA SUBUNIT C-TERMINAL DOMAIN (CTD) IS NOT A SOLE DETERMINANT FOR CONTROLLING SUPERCOILING EFFICIENCY

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Transcription-coupled DNA repair: two decades of progress and surprises

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Growth rate toxicity phenotypes and homeostatic supercoil control differentiate Escherichia coli from Salmonella enterica serovar Typhimurium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Dissection of the bacteriophage Mu strong gyrase site (SGS): significance of the SGS right arm in Mu biology and DNA gyrase mechanism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

A gyrase mutant with low activity disrupts supercoiling at the replication terminus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Measuring chromosome dynamics on different time scales using resolvases with varying half-lives

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Topological domain structure of the Escherichia coli chromosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Transposition of the heat-stable toxin astA gene into a gifsy-2-related prophage of Salmonella enterica serovar Abortusovis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

The problem of hypernegative supercoiling and R-loop formation in transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Identification of GtgE, a novel virulence factor encoded on the Gifsy-2 bacteriophage of Salmonella enterica serovar Typhimurium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Mu and IS1 transpositions exhibit strong orientation bias at the Escherichia coli bgl locus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Natural synthesis of a DNA-binding protein from the C-terminal domain of DNA gyrase A in Borrelia burgdorferi

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

The DNA cleavage reaction of DNA gyrase. Comparison of stable ternary complexes formed with enoxacin and CcdB protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Repetitive extragenic palindromic sequences: a major component of the bacterial genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

The binding of gyrase to DNA: analysis by retention by nitrocellulose filters

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

Supercoiling of the DNA template during transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5425795

DNA topology of highly transcribed operons in Salmonella enterica serovar Typhimurium

14 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Genetic and molecular analysis of GogB, a phage-encoded type III-secreted substrate in Salmonella enterica serovar typhimurium with autonomous expression from its associated phage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Restricted diffusion of DNA segments within the isolated Escherichia coli nucleoid

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

A set of recombineering plasmids for gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

DNA dynamics vary according to macrodomain topography in the E. coli chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Inducible prophages contribute to Salmonella virulence in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Design and synthesis of a minimal bacterial genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Mapping the topography of DNA wrapped around gyrase by nucleolytic and chemical probing of complexes of unique DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

A superhelical spiral in the Escherichia coli DNA gyrase A C-terminal domain imparts unidirectional supercoiling bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS12551-016-0207-9

Genetic analysis of the strong gyrase site (SGS) of bacteriophage Mu: localization of determinants required for promoting Mu replication

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28510215

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28510215

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

In vivo cleavage of Escherichia coli BIME‐2 repeats by DNA gyrase: genetic characterization of the target and identification of the cut site

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28510215

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S12551-016-0207-9

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference