(Q31110101)

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multiDE: a dimension reduced model based statistical method for differential expression analysis using RNA-sequencing data with multiple treatment conditions

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

multiDE: a dimension reduced model based statistical method for differential expression analysis using RNA-sequencing data with multiple treatment conditions (English)

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

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1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

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author name string

Guangliang Kang

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Li Du

2

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Hong Zhang

3

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

publication date

22 June 2016

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

BMC Bioinformatics

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Europe PubMed Central

PMC publication ID

17 August 2017

17

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

248

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

describes a project that uses

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

edgeR

Bioconductor package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Biomarker Detection in Association Studies: Modeling SNPs Simultaneously via Logistic ANOVA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

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PLNseq: a multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Activation of the aryl hydrocarbon receptor dampens the severity of inflammatory skin conditions

1 reference

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14 July 2018

Mechanisms regulating skin immunity and inflammation

1 reference

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14 July 2018

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

GC-content normalization for RNA-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Normalization, testing, and false discovery rate estimation for RNA-sequencing data

1 reference

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Strategies for subtypes—dealing with the diversity of breast cancer: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2011

1 reference

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14 July 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Psoriasis genetics: breaking the barrier

1 reference

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14 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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14 July 2018

A scaling normalization method for differential expression analysis of RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

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14 July 2018

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

1 reference

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14 July 2018

On the nature of human housekeeping genes

1 reference

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14 July 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Deadly decisions: the role of genes regulating programmed cell death in human preimplantation embryo development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

DNA ligase IV deficiency in mice leads to defective neurogenesis and embryonic lethality via the p53 pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

14 July 2018

A SMAD ubiquitin ligase targets the BMP pathway and affects embryonic pattern formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4917940

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Unbiased Estimation of Certain Correlation Coefficients

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1111-9

21 January 2018

Temporal and spatial aspects of fragmentation in early human embryos: possible effects on developmental competence and association with the differential elimination of regulatory proteins from polarized domains

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1111-9

21 January 2018

Distinct patterns of gene expression in the skin lesions of atopic dermatitis and psoriasis: a gene microarray analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27334001

12 December 2020

based on heuristic

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Identifiers

10.1186/S12859-016-1111-9

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

DBLP publication ID

journals/bmcbi/KangDZ16

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

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