(Q31038800)

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Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf

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Europe PubMed Central

PubMed publication ID

28 June 2017

Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf (English)

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Europe PubMed Central

PubMed publication ID

28 June 2017

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Björn Usadel

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Magdalena Pawełkowicz

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Magdalena Kowalczyk

8

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Adriano Nunes Nesi

4

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Adriano Nunes-Nesi

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28 June 2017

Alisdair R Fernie

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Alisdair R Fernie

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28 June 2017

12

object named as

Mark Stitt

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28 June 2017

Ewa Urbanczyk-Wochniak

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Ewa Urbanczyk-Wochniak

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28 June 2017

Fernando Carrari

5

object named as

Fernando Carrari

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28 June 2017

Oliver E Bläsing

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object named as

Oliver Bläsing

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28 June 2017

author name string

Oliver Thimm

3

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28 June 2017

Marcus Davy

6

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28 June 2017

Daniel Weicht

9

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28 June 2017

Anna Polinceusz

10

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28 June 2017

Svenja Meyer

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28 June 2017

publication date

1 March 2006

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28 June 2017

number of pages

20

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Plant Molecular Biology

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28 June 2017

60

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28 June 2017

5

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28 June 2017

773-792

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Europe PubMed Central

PubMed publication ID

28 June 2017

Comprehensive transcript profiling of Pto- and Prf-mediated host defense responses to infection by Pseudomonas syringae pv. tomato.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database

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https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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A novel algorithm for computational identification of contaminated EST libraries

1 reference

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12 December 2020

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Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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High density molecular linkage maps of the tomato and potato genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Ethylene-regulated gene expression in tomato fruit: characterization of novel ethylene-responsive and ripening-related genes isolated by differential display

1 reference

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12 December 2020

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Molecular and biochemical triggers of potato tuber development

1 reference

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12 December 2020

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InterPro, progress and status in 2005

1 reference

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12 December 2020

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The tomato ethylene receptors NR and LeETR4 are negative regulators of ethylene response and exhibit functional compensation within a multigene family

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Comparison of changes in fruit gene expression in tomato introgression lines provides evidence of genome-wide transcriptional changes and reveals links to mapped QTLs and described traits

1 reference

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12 December 2020

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Arabidopsis polyamine biosynthesis: absence of ornithine decarboxylase and the mechanism of arginine decarboxylase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Molecular genetics of tomato fruit ripening

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Comprehensive EST analysis of tomato and comparative genomics of fruit ripening

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Terpenoid metabolism in wild-type and transgenic Arabidopsis plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Control of potato tuber sprouting

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

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https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport

1 reference

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12 December 2020

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Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development

1 reference

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12 December 2020

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The ascorbic acid redox state controls guard cell signaling and stomatal movement

1 reference

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12 December 2020

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Control of ascorbate synthesis by respiration and its implications for stress responses

1 reference

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12 December 2020

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Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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TM4: a free, open-source system for microarray data management and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Pyruvate decarboxylase provides growing pollen tubes with a competitive advantage in petunia

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Basic local alignment search tool

1 reference

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12 December 2020

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Identification of malodorous, a wild species allele affecting tomato aroma that was aelected against during domestication

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Ascorbate biosynthesis and function in photoprotection

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Inparanoid: a comprehensive database of eukaryotic orthologs

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Microarray results: how accurate are they?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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An ethylene-inducible component of signal transduction encoded by never-ripe

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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Plant protein annotation in the UniProt knowledgebase

1 reference

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Zooming in on a quantitative trait for tomato yield using interspecific introgressions

1 reference

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based on heuristic

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Effects of leaf ascorbate content on defense and photosynthesis gene expression in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GoMiner: a resource for biological interpretation of genomic and proteomic data

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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[email protected]: the Golm Metabolome Database

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development

1 reference

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based on heuristic

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Gene ontology: tool for the unification of biology

1 reference

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Characterisation of a pine MYB that regulates lignification

1 reference

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Thylakoid-bound ascorbate peroxidase mutant exhibits impaired electron transport and photosynthetic activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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based on heuristic

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Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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based on heuristic

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The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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based on heuristic

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The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1007/S11103-005-5772-4

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Europe PubMed Central

PubMed publication ID

28 June 2017

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PubMed publication ID

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Europe PubMed Central

PubMed publication ID

28 June 2017

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