(Q29346723)

English

Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2.

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Europe PubMed Central

PubMed publication ID

11 April 2017

Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2. (English)

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

Salmonella Typhimurium

1 reference

based on heuristic

inferred from title

Timothy R. Hoover

object named as

Timothy R Hoover

6

0 references

Jonathan G. Frye

object named as

Jonathan G Frye

2

0 references

Michael McClelland

object named as

Michael McClelland

4

0 references

author name string

David J Samuels

1

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

Steffen Porwollik

3

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

Jan Mrázek

5

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

Anna C Karls

7

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

language of work or name

0 references

publication date

5 September 2013

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

602

1 reference

Europe PubMed Central

PubMed publication ID

11 April 2017

Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52.

1 reference

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1 reference

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Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens

1 reference

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11 April 2017

Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense

1 reference

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11 April 2017

Rifamycins do not function by allosteric modulation of binding of Mg2+ to the RNA polymerase active center

1 reference

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11 April 2017

Structural Basis of DNA Recognition by the Alternative Sigma-factor, σ54

1 reference

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11 April 2017

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

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11 April 2017

WebArray: an online platform for microarray data analysis

1 reference

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11 April 2017

WebLogo: A Sequence Logo Generator

1 reference

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11 April 2017

A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa

1 reference

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11 April 2017

Salmonella utilizes D-glucosaminate via a mannose family phosphotransferase system permease and associated enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Analysis of the Pseudomonas aeruginosa regulon controlled by the sensor kinase KinB and sigma factor RpoN.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

cis-antisense RNA, another level of gene regulation in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Mechanisms for activating bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Inactivation of alternative sigma factor 54 (RpoN) leads to increased acid resistance, and alters locus of enterocyte effacement (LEE) expression in Escherichia coli O157 : H7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Single molecule approaches to transcription factor kinetics in living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

WebArrayDB: cross-platform microarray data analysis and public data repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Helicobacter pylori FlgR is an enhancer-independent activator of sigma54-RNA polymerase holoenzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Purification and characterization of the AAA+ domain of Sinorhizobium meliloti DctD, a sigma54-dependent transcriptional activator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Genome-wide analysis of transcriptional hierarchy and feedback regulation in the flagellar system of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Lateral gene transfer in Salmonella

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

A non-redundant microarray of genes for two related bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

ArgR-independent induction and ArgR-dependent superinduction of the astCADBE operon in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Interactions of regulated and deregulated forms of the sigma54 holoenzyme with heteroduplex promoter DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The hydH/G Genes from Escherichia coli code for a zinc and lead responsive two-component regulatory system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

prpR, ntrA, and ihf functions are required for expression of the prpBCDE operon, encoding enzymes that catabolize propionate in Salmonella enterica serovar typhimurium LT2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The amino terminus of Salmonella enterica serovar Typhimurium sigma(54) is required for interactions with an enhancer-binding protein and binding to fork junction DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Compilation and analysis of sigma(54)-dependent promoter sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

An enhancer element located downstream of the major glutamate dehydrogenase gene of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Excision of IS492 requires flanking target sequences and results in circle formation in Pseudoalteromonas atlantica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Mutant forms of Salmonella typhimurium sigma54 defective in transcription initiation but not promoter binding activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Avirulence of LT2 strains of Salmonella typhimurium results from a defective rpoS gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Simultaneous prevention of glutamine synthesis and high-affinity transport attenuates Salmonella typhimurium virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Analysis of the hydA locus of Escherichia coli: two genes (hydN and hypF) involved in formate and hydrogen metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Mutations that improve the ant promoter of Salmonella phage P22.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Phase variation in Salmonella: analysis of Hin recombinase and hix recombination site interaction in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Nitrogen regulation in Salmonella typhimurium. Identification of an ntrC protein-binding site and definition of a consensus binding sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Characterization of divergent NtrA-dependent promoters in the anaerobically expressed gene cluster coding for hydrogenase 3 components of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

The central domain of Rhizobium leguminosarum DctD functions independently to activate transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Stress-induced expression of the Escherichia coli phage shock protein operon is dependent on sigma 54 and modulated by positive and negative feedback mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Specific binding of the transcription factor sigma-54 to promoter DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

Nitrogen control of Salmonella typhimurium: co-regulation of synthesis of glutamine synthetase and amino acid transport systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

3 June 2018

An alternative PII protein in the regulation of glutamine synthetase in Escherichia coli

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

Regulation of the nitric oxide reduction operon (norRVW) in Escherichia coli. Role of NorR and sigma54 in the nitric oxide stress response.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G (PspG).

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

sigma54-RNA polymerase controls sigma70-dependent transcription from a non-overlapping divergent promoter.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-602

21 January 2018

A sigma54-dependent promoter in the regulatory region of the Escherichia coli rpoH gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3844500

26 November 2018

Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/24007446

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of the ntrA gene product in the anaerobic metabolism of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/24007446

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-14-602

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-602

9 September 2019

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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