Property talk:P671

Latest comment: 7 years ago by Cmungall in topic MGI is not just genes

Documentation

Mouse Genome Informatics ID
identifier for a gene in the Mouse Genome Informatics database
Descriptionprovides integrated access to data on the genetics, genomics and biology of the laboratory mouse
Applicable "stated in" valueMouse Genome Informatics (Q1951035)
Data typeExternal identifier
Template parameteren:Template:GNF_Protein_box = MGI-ID
Domainterm (note: this should be moved to the property statements)
Allowed valuesMGI:\d{1,7}
Examplemyoglobin (Q192642)MGI:96922
Forkhead box P2 (Q227241)MGI:2148705
glucagon (Q170617)MGI:95674
Sourcehttp://www.informatics.jax.org/
Formatter URLhttp://www.informatics.jax.org/accession/$1
Robot and gadget jobsCollect data from infoboxes and the online database.
Lists
Proposal discussionProposal discussion
Current uses
Total70,597
Main statement70,585>99.9% of uses
Qualifier3<0.1% of uses
Reference9<0.1% of uses
Search for values
[create Create a translatable help page (preferably in English) for this property to be included here]
Format “MGI:\d{1,7}: value must be formatted using this pattern (PCRE syntax). (Help)
List of violations of this constraint: Database reports/Constraint violations/P671#Format, hourly updated report, SPARQL
Single value: this property generally contains a single value. (Help)
List of violations of this constraint: Database reports/Constraint violations/P671#Single value, hourly updated report, SPARQL
Distinct values: this property likely contains a value that is different from all other items. (Help)
List of violations of this constraint: Database reports/Constraint violations/P671#Unique value, hourly updated report, SPARQL (every item), SPARQL (by value)
Allowed entity types are Wikibase item (Q29934200): the property may only be used on a certain entity type (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P671#Entity types
Scope is as main value (Q54828448), as reference (Q54828450): the property must be used by specified way only (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P671#Scope, SPARQL

The MGI prefix needs to be part of the Identifier

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The MGI prefix is an intrinsic part of the identifier. Everything at the MGI contains the prefix. Not having MGI prefix being part of the identifier might leads to integration issue. --Andrawaag (talk) 11:00, 10 December 2015 (UTC)Reply

  Strong support We keep having this discussion over and over. An identifier is a necessary part of IDs. MGI has been a leader in the biomedical community for decades and is being used community-wide. It is essential that it is present. -- Emitraka (talk) 11:04, 10 December 2015 (UTC)Reply
why is this any different than CHEBI ID? What is the problem with treating it the same, and modeling the local part as being the numeric part, and having a rule for constructing a more unique prefixed identifier, like CHEBI? Cmungall (talk) 06:00, 27 March 2017 (UTC)Reply

MGI is not just genes

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This assumes that MGI identifiers are just for genes. In fact an MGI identifier can be for other entities such as genotypes. The URL prefix "http://www.informatics.jax.org/accession/MGI:" works for all MGI IDs Cmungall (talk) 06:00, 27 March 2017 (UTC)Reply

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