Proceedings of the National Academy of Sciences, 2006
Electronic tracking tags have revolutionized our understanding of broad-scale movements and habit... more Electronic tracking tags have revolutionized our understanding of broad-scale movements and habitat use of highly mobile marine animals, but a large gap in our knowledge still remains for a wide range of small species. Here, we report the extraordinary transequatorial postbreeding migrations of a small seabird, the sooty shearwater, obtained with miniature archival tags that log data for estimating position, dive depth, and ambient temperature. Tracks (262 ± 23 days) reveal that shearwaters fly across the entire Pacific Ocean in a figure-eight pattern while traveling 64,037 ± 9,779 km roundtrip, the longest animal migration ever recorded electronically. Each shearwater made a prolonged stopover in one of three discrete regions off Japan, Alaska, or California before returning to New Zealand through a relatively narrow corridor in the central Pacific Ocean. Transit rates as high as 910 ± 186 km·day −1 were recorded, and shearwaters accessed prey resources in both the Northern and Sou...
Stressors associated with human activities interact in complex ways to affect marine ecosystems, ... more Stressors associated with human activities interact in complex ways to affect marine ecosystems, yet we lack spatially explicit assessments of cumulative impacts on ecologically and economically key components such as marine predators. Here we develop a metric of cumulative utilization and impact (CUI) on marine predators by combining electronic tracking data of eight protected predator species (n=685 individuals) in the California Current Ecosystem with data on 24 anthropogenic stressors. We show significant variation in CUI with some of the highest impacts within US National Marine Sanctuaries. High variation in underlying species and cumulative impact distributions means that neither alone is sufficient for effective spatial management. Instead, comprehensive management approaches accounting for both cumulative human impacts and trade-offs among multiple stressors must be applied in planning the use of marine resources.
Plasticity in foraging behavior among individuals, or across populations may reduce competition. ... more Plasticity in foraging behavior among individuals, or across populations may reduce competition. As a generalist carnivore, western gulls (Larus occidentalis) consume a wide range of marine and terrestrial foods. However, the foraging patterns and habitat selection (ocean or land) of western gulls is not well understood, despite their ubiquity in coastal California. Here, we used GPS loggers to compare the foraging behavior and habitat use of western gulls breeding at two island colonies in central California. Gulls from offshore Southeast Farallon Island (SFI; n = 41 gulls) conducted more oceanic trips (n = 90) of shorter duration (3.8 ± 3.3 SD hours) and distance (27.1 ± 20.3 km) than trips to the mainland (n = 41) which were nearly 4 times longer and 2 times farther away. In contrast, gulls from coastal Año Nuevo Island (ANI; n = 20 gulls) foraged at sites on land more frequently (n = 103) but trip durations (3.6 ± 2.4 h) and distances (20.8 ± 9.4 km) did not differ significantly...
Past tracking studies of marine animals have primarily targeted adults, biasing our understanding... more Past tracking studies of marine animals have primarily targeted adults, biasing our understanding of at-sea habitat use toward older life stages. Anthropogenic threats persist throughout the at-sea ranges of all life stages and it is therefore of interest to population ecologists and managers alike to understand spatiotemporal distributions and possible niche differentiation between age-classes. In albatrosses, particularly little is known about the juvenile life stage when fledglings depart the colonies and venture to sea with no prior experience or parental guidance. We compared the dispersal of 22 fledgling Black-footed Albatross Phoebastria nigripes between 2006 and 2008 using satellite telemetry and 16 adults between 2008 and 2009 using geolocaters from Midway Atoll National Wildlife Refuge, Northwest Hawaiian Islands. Following tag deployment, all fledglings spent several days within the calm atoll waters, then travelled northward until reaching 750-900 km from the colony. At this point, fledgling distributions approached the productive North Pacific Transition Zone (NPTZ). Rather than reaching the high chlorophyll a densities on the leading edge of this zone, however, fledglings remained in areas of low productivity in the subtropical gyre. In contrast, adult albatrosses from the same breeding colony did not utilize the NPTZ at this time of year but rather ranged throughout the highly productive northern periphery of the Pacific Ocean Basin among the shelf regions off Japan and the Aleutian Islands. The dichotomy in habitat use between fledglings and adults from Midway Atoll results in complete spatial segregation between age-classes and suggests ontogenetic niche separation in this species. This research fills a large knowledge gap in at-sea habitat use during a little known yet critical life stage of albatrosses, and contributes to a more comprehensive understanding of differential mortality pressure between age-classes and overall conservation status for the vulnerable Black-footed Albatross.
A major hypothesis of life-history theory is that conditions of early development affect future s... more A major hypothesis of life-history theory is that conditions of early development affect future survival and reproductive success. Responses to detrimental environments during early ontogeny may involve trade-offs between current and future fitness. Yet, the functional mechanisms involved in such evolutionary trade-offs remain poorly documented. 2. The physiological and behavioural ontogeny of diving abilities was examined in subantarctic fur seal (Arctocephalus tropicalis Gray) pups to assess whether the repeated extreme fasts they naturally endure throughout the period of maternal dependence impacts on their development. 3. The ontogeny of pup body oxygen storage capacity was slow, in particular for the muscle compartment, which shows limited increase in myoglobin content (0AE23-0AE85 g 100 g wet muscle )1 ). As a consequence, by the time of weaning, mass-specific oxygen stores had only reached 76%, 24% and 61% of adult female capacity for blood, muscle and total, respectively. Concomitantly, in marked contrast to other pinniped infants, they spent decreasing amounts of time in water (16-7%) with age and exhibited very little diving experience and skills. 4. Overall, in addition to experiencing the longest fasting durations throughout the maternal dependence period, subantarctic fur seal pups demonstrate the lowest levels of mass-specific total oxygen stores and maximum dive duration of any otariid near the age of weaning reported to date. 5. Furthermore, dives that exceeded the calculated aerobic dive limit occurred with a very low frequency (0AE04%), suggesting that behavioural limitations linked to the necessity to conserve energy to survive repeated fasting, rather than restricted oxygen storage capacity, constrained pup diving behaviour. 6. Hence, these animals appear to trade-off the early development of both their physiological and behavioural diving abilities in favour of body fat accumulation to survive the prolonged fasts they must endure and, potentially, provide a nutritional buffer while they locate appropriate food patches after weaning. While promoting pre-weaning survival, this strategy renders pups more vulnerable to unpredictable changes in environmental conditions and food availability at the transition to independent foraging and, thus, could have negative impact on post-weaning survival.
Past tracking studies of marine animals have primarily targeted adults, biasing our understanding... more Past tracking studies of marine animals have primarily targeted adults, biasing our understanding of at-sea habitat use toward older life stages. Anthropogenic threats persist throughout the at-sea ranges of all life stages and it is therefore of interest to population ecologists and managers alike to understand spatiotemporal distributions and possible niche differentiation between age-classes. In albatrosses, particularly little is known about the juvenile life stage when fledglings depart the colonies and venture to sea with no prior experience or parental guidance. We compared the dispersal of 22 fledgling Black-footed Albatross Phoebastria nigripes between 2006 and 2008 using satellite telemetry and 16 adults between 2008 and 2009 using geolocaters from Midway Atoll National Wildlife Refuge, Northwest Hawaiian Islands. Following tag deployment, all fledglings spent several days within the calm atoll waters, then travelled northward until reaching 750-900 km from the colony. At this point, fledgling distributions approached the productive North Pacific Transition Zone (NPTZ). Rather than reaching the high chlorophyll a densities on the leading edge of this zone, however, fledglings remained in areas of low productivity in the subtropical gyre. In contrast, adult albatrosses from the same breeding colony did not utilize the NPTZ at this time of year but rather ranged throughout the highly productive northern periphery of the Pacific Ocean Basin among the shelf regions off Japan and the Aleutian Islands. The dichotomy in habitat use between fledglings and adults from Midway Atoll results in complete spatial segregation between age-classes and suggests ontogenetic niche separation in this species. This research fills a large knowledge gap in at-sea habitat use during a little known yet critical life stage of albatrosses, and contributes to a more comprehensive understanding of differential mortality pressure between age-classes and overall conservation status for the vulnerable Black-footed Albatross.
Thirty to fifty per cent of HIV patients develop HIV associated neurocognitive disorders (HAND) d... more Thirty to fifty per cent of HIV patients develop HIV associated neurocognitive disorders (HAND) despite combined antiretroviral therapy. HIV-1 infected macrophages release viral and cellular proteins that induce neuronal degeneration and death. We hypothesize that changes in the macrophage secretome of HIV-1 seropositive patients with HAND may dissect proteins related to neurotoxicity. Monocyte-derived macrophages (MDM) were isolated from the peripheral blood of 12 HIV+ and 4 HIV- women characterized for neurocognitive function. Serum-free MDM supernatants were collected for protein isolation and quantification with iTRAQ® labeling. Protein identification was performed using a LTQ Orbitrap Velos mass spectrometer and validated in MDM supernatants and in plasma using ELISA. Three proteins were different between NC and ANI, 6 between NC and HAD, and 6 between NC and HAD. Among these, S100A9 was decreased in plasma from patients with ANI, and MMP9 was decreased in the plasma of all HIV...
We hypothesised that comparing the protein mixture in bronchoalveolar lavage fluid (BALF) between... more We hypothesised that comparing the protein mixture in bronchoalveolar lavage fluid (BALF) between humans and mice may lead to mechanistic insights into common and divergent pathways that evolved in each species. BALF from four humans and six mice was pooled separately and underwent identical shotgun proteomic analysis. Functional and network analysis was applied to identify overlapping and distinct pathways enriched in the BALF. Follow-up experiments using Western analysis in unpooled BALF samples were performed. We identified 91 unique proteins in human and 117 unique proteins in mouse BALF samples. Functional analysis of the proteins revealed conservation of several key processes between the species, including defence response. Oxidative stress response, however, was selectively enriched only in mouse BALF. Differences in the expression of peroxiredoxin-1, a key member of the defence pathway against oxidative injury, were confirmed between normal human and mouse BALF and in models...
Calcium signalling is important for differentiation-dependent gene expression, but is also involv... more Calcium signalling is important for differentiation-dependent gene expression, but is also involved in other cellular functions. Therefore, mechanisms must exist to distinguish calcium signalling relevant to differentiation. Calcineurin is a calcium-regulated phosphatase that is required for myogenic gene expression and skeletal muscle differentiation. Here, we demonstrate that inhibition of calcineurin blocks chromatin remodelling and that the Brg1 ATPase of the SWI/SNF chromatin remodelling enzyme, which is required for the activation of myogenic gene expression, is a calcineurin substrate. Furthermore, we identify the calcium-regulated classical protein kinase C β (PKCβ) as a repressor of myogenesis and as the enzyme that opposes calcineurin function. Replacement of endogenous Brg1 with a phosphomimetic mutant in primary myoblasts inhibits myogenesis, whereas replacement with a non-phosphorylatable mutant allows myogenesis despite inhibition of calcineurin signalling, demonstrati...
1.Foraging and migration often require different energetic and movement strategies. Though not re... more 1.Foraging and migration often require different energetic and movement strategies. Though not readily apparent, constraints during one phase might influence the foraging strategies observed in another. For marine birds that fly and dive, body size constraints likely present a trade-off between foraging ability and migration as smaller bodies reduce flight costs whereas larger bodies are advantageous for diving deeper. 2.This study examines individual wintering strategies of deep diving thick-billed murres (Uria lomvia) breeding at three colonies in the south-eastern Bering Sea, St Paul, St George, and Bogoslof. These colonies, arranged north to south, are located such that breeding birds forage in a gradient from shelf to deep-water habitats. 3.We used geolocation time-depth recorders and stable isotopes from feathers to determine differences in foraging behaviour and diet of murres during three non-breeding periods, 2008-11. Body size was quantified by a principal component analysis (wing, culmen, head+bill, and tarsus length). A hierarchical cluster analysis identified winter foraging strategies based on individual movement, diving behaviour, and diet (inferred from stable isotopes). 4.Structural body size differed by breeding island. Larger birds from St Paul had higher wing-loading than smaller birds from St George. Larger birds, mainly from St Paul, dove to deeper depths, spent more time in the Bering Sea, and likely consumed higher trophic-level prey in late winter. Three winter foraging strategies were identified. The main strategy, employed by small birds from all three breeding colonies in the first two years, was characterized by high residency areas in the North Pacific south of the Aleutians and nocturnal diving. In contrast, 31% of birds from St Paul remained in the Bering Sea, and foraged mainly during the day, apparently feeding on higher trophic-level prey. Throat feather stable isotopes indicated that individuals exhibited flexibility in the use of this colony-specific foraging strategy. The third strategy only occurred in 2010/11, when birds dove more and deeper, suggesting limited prey resources. 5.Foraging strategies partitioned with respect to annual differences, presumably in response to shifts in distribution of prey, and were linked to body size. The presence of a colony specific wintering strategy suggests the potential for overwinter survival differences between these populations. This article is protected by copyright. All rights reserved.
Graphical Abstract Highlights d In vivo Mtb screen identifies the membrane-associated oxidoreduct... more Graphical Abstract Highlights d In vivo Mtb screen identifies the membrane-associated oxidoreductase complex (MRC) d The MRC coordinates ROS detoxification and thiol homeostasis during infection d Loss of the MRC reduces thiol recycling and increases sensitivity to oxidative damage d Mtb mutants of MRC components are highly attenuated
Proceedings of IGARSS '94 - 1994 IEEE International Geoscience and Remote Sensing Symposium, 1994
The SIR-C/X-SAR imaging radar took its first flight on the Space Shuttle Endeavour in April 1994.... more The SIR-C/X-SAR imaging radar took its first flight on the Space Shuttle Endeavour in April 1994. This multi-frequency radar has fully polarimetric capability- at L- and C-band, and a single polarization at X-band (X-SAR). Calibration of polarimetric L- and C-band data for all the different modes SIR-C offers is an especially complicated problem. The solution involves extensive analysis of pre-flight
NASA's Jet Propulsion Laboratory is currently building a reconfigurable, polarimetric L-band synt... more NASA's Jet Propulsion Laboratory is currently building a reconfigurable, polarimetric L-band synthetic aperture radar (SAR), specifically designed to acquire airborne repeat track SAR data for differential interferometric measurements. Differentian interferometry can provide key deformation measurements, important for studies of earthquakes, volcanoes and other dynamically changing phenomena. Using precision real-time GPS and a sensor controlled flight management system, the system will be able to fly predefined paths with great precision. The expected performance of the flight control system will constrain the flight path to be within a 10 m diameter tube about the desired flight track. The radar will be designed to be operable on a UAV (Unpiloted Aria1 Vehicle) but will initially be demonstrated on a can a NASA Gulfstream 111. The radar will be fully polarimetric, with a range bandwidth of 80 MHz (2 m range resolution), and will support a 16 km range swath. The antenna will be electronically steered along track to assure that the antenna beam can be directed independently, regardless of the wind direction and speed. Other features supported by the antenna include elevation monopulse and pulse-to-pulse re-steering capabilities that will enable some novel modes of operation. The system will nominally operate a t 45,000 ft (13800 m). The program began as an Instrument Incubator Project (IIP) funded by NASA Earth Science and Technology Office (ESTO).
Cancer cells exhibit modifications in nuclear architecture and transcriptional control. Tumor gro... more Cancer cells exhibit modifications in nuclear architecture and transcriptional control. Tumor growth and metastasis are supported by RUNX family transcriptional scaffolding proteins, which mediate the assembly of nuclear-matrix-associated gene-regulatory hubs. We used proteomic analysis to identify RUNX2-dependent protein-protein interactions associated with the nuclear matrix in bone, breast and prostate tumor cell types and found that RUNX2 interacts with three distinct proteins that respond to DNA damage - RUVBL2, INTS3 and BAZ1B. Subnuclear foci containing these proteins change in intensity or number following UV irradiation. Furthermore, RUNX2, INTS3 and BAZ1B form UV-responsive complexes with the serine-139-phosphorylated isoform of H2AX (γH2AX). UV irradiation increases the interaction of BAZ1B with γH2AX and decreases histone H3 lysine 9 acetylation levels, which mark accessible chromatin. RUNX2 depletion prevents the BAZ1B-γH2AX interaction and attenuates loss of H3K9 and H...
Aquatic toxicology (Amsterdam, Netherlands), Jan 28, 2007
The glutathione S-transferases (GSTs) are a family of phase II detoxification enzymes which prote... more The glutathione S-transferases (GSTs) are a family of phase II detoxification enzymes which protect against chemical injury. In contrast to mammals, GST expression in fish has not been extensively characterized, especially in the context of detoxifying waterborne pollutants. In the Northwestern United States, coho salmon (Oncorhynchus kisutch) are an important species of Pacific salmon with complex life histories that can include exposure to a variety of compounds including GST substrates. In the present study we characterized the expression of coho hepatic GST to better understand the ability of coho to detoxify chemicals of environmental relevance. Western blotting of coho hepatic GST revealed the presence of multiple GST-like proteins of approximately 24-26kDa. Reverse phase HPLC subunit analysis of GSH affinity-purified hepatic GST demonstrated six major and at least two minor potential GST isoforms which were characterized by liquid chromatography electrospray ionization tandem...
BACKGROUND. Functional development of the prostate is governed by stromal mesenchyme induction an... more BACKGROUND. Functional development of the prostate is governed by stromal mesenchyme induction and epithelial response. Stromal/epithelial signaling can be mediated through direct cell-cell contact and diffusible factors and their cell surface receptors. These inducers are likely secreted or membrane-associated extracellular proteins. Given the importance of intercellular communication, it is possible that diseases like cancer could arise from a loss of this communication. One approach to gain a molecular understanding of stromal cells is to identify, as a first step, secreted stromal signaling factors. We proposed to do this by comparative analysis between bladder and prostate. METHODS. Secreted proteins were identified from cultured normal prostate and bladder stromal mesenchyme cells by glycopeptide-capture method followed by mass spectrometry. Differences in protein abundance between prostate and bladder were quantified from calculated peptide ion current area (PICA) followed by Western validation. Functional and pathway analyses of the proteins were carried out by Gene Ontology (GO) and Teranode software. RESULTS. This analysis produced a list of 116 prostate and 84 bladder secreted glycoproteins with ProteinProphet probability scores !0.9. Stromal proteins upregulated in the prostate include cathepsin L, follistatin-related protein, neuroendocrine convertase, tumor necrosis factor receptor, and others that are known to be involved in signal transduction, extracellular matrix interaction, differentiation and transport. CONCLUSIONS. We have identified a number of potential proteins for stromal signaling and bladder or prostate differentiation program. The prostate stromal/ epithelial signaling may be accomplished through activation of the ECM-receptor interaction, complement and coagulation cascades, focal adhesion and cell adhesion pathways.
Thoracic SMT can improve symptoms in patients with subacromial impingement syndrome. However, at ... more Thoracic SMT can improve symptoms in patients with subacromial impingement syndrome. However, at this time the mechanisms of SMT are not well established. It is possible that changes in pain sensitivity may occur following SMT. To assess the immediate pain response in patients with shoulder pain following thoracic spinal manipulative therapy (SMT) using pressure pain threshold (PPT), and to assess the relationship of change in pain sensitivity to patient-rated outcomes of pain and function following treatment. Randomized Controlled Study. Subjects with unilateral subacromial impingement syndrome (n = 45) were randomly assigned to receive treatment with thoracic SMT or sham thoracic SMT. PPT was measured at the painful shoulder (deltoid) and unaffected regions (contralateral deltoid and bilateral lower trapezius areas) immediately pre- and post-treatment. Patient-rated outcomes were pain (numeric pain rating scale - NPRS), function (Pennsylvania Shoulder Score - Penn), and global rating of change (GROC). There were no significant differences between groups in pre-to post-treatment changes in PPT (p ≥ 0.583) nor were there significant changes in PPT within either group (p ≥ 0.372) following treatment. NPRS, Penn and GROC improved across both groups (p < 0.001), but there were no differences between the groups (p ≥ 0.574). There were no differences in pressure pain sensitivity between participants receiving thoracic SMT versus sham thoracic SMT. Both groups had improved patient-rated pain and function within 24-48 h of treatment, but there was no difference in outcomes between the groups.
Mutations in dystrophin lead to Duchenne muscular dystrophy, which is among the most common human... more Mutations in dystrophin lead to Duchenne muscular dystrophy, which is among the most common human genetic disorders. Dystrophin nucleates assembly of the dystrophin-glycoprotein complex (DGC), and a defective DGC disrupts an essential link between the intracellular cytoskeleton and the basal lamina, leading to progressive muscle wasting. In vitro studies have suggested that dystrophin phosphorylation may affect interactions with actin or syntrophin, yet whether this occurs in vivo or affects protein function remains unknown. Utilizing nanoflow liquid chromatography mass spectrometry, we identified 18 phosphorylated residues within endogenous dystrophin. Mutagenesis revealed that phosphorylation at S3059 enhances the dystrophin-dystroglycan interaction and 3D modeling utilizing the Rosetta software program provided a structural model for how phosphorylation enhances this interaction. These findings demonstrate that phosphorylation is a key mechanism regulating the interaction between...
Heat shock protein 90 (hsp90) is an emerging therapeutic target in chronic liver diseases. Hsp90 ... more Heat shock protein 90 (hsp90) is an emerging therapeutic target in chronic liver diseases. Hsp90 plays an important role in liver immune cell activation; however its role in alcoholic liver disease (ALD) remains elusive. Here we hypothesize that hsp90 is crucial in alcohol induced steatosis and pro-inflammatory cytokine production. To test this hypothesis, we employed a pharmacological inhibitor of hsp90, 17-DMAG (17-Dimethylamino-ethylamino-17-demethoxygeldanamycin) in an in vivo mouse model of acute and chronic alcoholic liver injury. C57BL/6 mice were given either a single dose of ethanol via oral gavage (acute) or chronically fed alcohol for 2 weeks followed by oral gavage (chronic-binge). 17-DMAG was administered during or at the end of feeding. Liver injury parameters, inflammatory cytokines and lipid metabolism genes were analysed. Our results reveal increased expression of hsp90 in human and mouse alcoholic livers. In vivo inhibition of hsp90, using 17-DMAG, not only prevented but also alleviated alcoholic liver injury, determined by lower serum ALT, AST and reduced hepatic triglycerides. Mechanistic analysis showed that 17-DMAG decreased alcohol mediated oxidative stress, reduced serum endotoxin, decreased inflammatory cells, and diminished sensitization of liver macrophages to LPS, resulting in downregulation of CD14, NFκB inhibition, and decreased pro-inflammatory cytokine production. Hsp90 inhibition decreased fatty acid synthesis genes via reduced nuclear SREBP-1 and favoured fatty acid oxidation genes via PPARα. Inhibition of hsp90 decreased alcohol induced steatosis and pro-inflammatory cytokines and inhibited alcoholic liver injury. Hsp90 is therefore relevant in human alcoholic cirrhosis and a promising therapeutic target in ALD.
Proceedings of the National Academy of Sciences, 2006
Electronic tracking tags have revolutionized our understanding of broad-scale movements and habit... more Electronic tracking tags have revolutionized our understanding of broad-scale movements and habitat use of highly mobile marine animals, but a large gap in our knowledge still remains for a wide range of small species. Here, we report the extraordinary transequatorial postbreeding migrations of a small seabird, the sooty shearwater, obtained with miniature archival tags that log data for estimating position, dive depth, and ambient temperature. Tracks (262 ± 23 days) reveal that shearwaters fly across the entire Pacific Ocean in a figure-eight pattern while traveling 64,037 ± 9,779 km roundtrip, the longest animal migration ever recorded electronically. Each shearwater made a prolonged stopover in one of three discrete regions off Japan, Alaska, or California before returning to New Zealand through a relatively narrow corridor in the central Pacific Ocean. Transit rates as high as 910 ± 186 km·day −1 were recorded, and shearwaters accessed prey resources in both the Northern and Sou...
Stressors associated with human activities interact in complex ways to affect marine ecosystems, ... more Stressors associated with human activities interact in complex ways to affect marine ecosystems, yet we lack spatially explicit assessments of cumulative impacts on ecologically and economically key components such as marine predators. Here we develop a metric of cumulative utilization and impact (CUI) on marine predators by combining electronic tracking data of eight protected predator species (n=685 individuals) in the California Current Ecosystem with data on 24 anthropogenic stressors. We show significant variation in CUI with some of the highest impacts within US National Marine Sanctuaries. High variation in underlying species and cumulative impact distributions means that neither alone is sufficient for effective spatial management. Instead, comprehensive management approaches accounting for both cumulative human impacts and trade-offs among multiple stressors must be applied in planning the use of marine resources.
Plasticity in foraging behavior among individuals, or across populations may reduce competition. ... more Plasticity in foraging behavior among individuals, or across populations may reduce competition. As a generalist carnivore, western gulls (Larus occidentalis) consume a wide range of marine and terrestrial foods. However, the foraging patterns and habitat selection (ocean or land) of western gulls is not well understood, despite their ubiquity in coastal California. Here, we used GPS loggers to compare the foraging behavior and habitat use of western gulls breeding at two island colonies in central California. Gulls from offshore Southeast Farallon Island (SFI; n = 41 gulls) conducted more oceanic trips (n = 90) of shorter duration (3.8 ± 3.3 SD hours) and distance (27.1 ± 20.3 km) than trips to the mainland (n = 41) which were nearly 4 times longer and 2 times farther away. In contrast, gulls from coastal Año Nuevo Island (ANI; n = 20 gulls) foraged at sites on land more frequently (n = 103) but trip durations (3.6 ± 2.4 h) and distances (20.8 ± 9.4 km) did not differ significantly...
Past tracking studies of marine animals have primarily targeted adults, biasing our understanding... more Past tracking studies of marine animals have primarily targeted adults, biasing our understanding of at-sea habitat use toward older life stages. Anthropogenic threats persist throughout the at-sea ranges of all life stages and it is therefore of interest to population ecologists and managers alike to understand spatiotemporal distributions and possible niche differentiation between age-classes. In albatrosses, particularly little is known about the juvenile life stage when fledglings depart the colonies and venture to sea with no prior experience or parental guidance. We compared the dispersal of 22 fledgling Black-footed Albatross Phoebastria nigripes between 2006 and 2008 using satellite telemetry and 16 adults between 2008 and 2009 using geolocaters from Midway Atoll National Wildlife Refuge, Northwest Hawaiian Islands. Following tag deployment, all fledglings spent several days within the calm atoll waters, then travelled northward until reaching 750-900 km from the colony. At this point, fledgling distributions approached the productive North Pacific Transition Zone (NPTZ). Rather than reaching the high chlorophyll a densities on the leading edge of this zone, however, fledglings remained in areas of low productivity in the subtropical gyre. In contrast, adult albatrosses from the same breeding colony did not utilize the NPTZ at this time of year but rather ranged throughout the highly productive northern periphery of the Pacific Ocean Basin among the shelf regions off Japan and the Aleutian Islands. The dichotomy in habitat use between fledglings and adults from Midway Atoll results in complete spatial segregation between age-classes and suggests ontogenetic niche separation in this species. This research fills a large knowledge gap in at-sea habitat use during a little known yet critical life stage of albatrosses, and contributes to a more comprehensive understanding of differential mortality pressure between age-classes and overall conservation status for the vulnerable Black-footed Albatross.
A major hypothesis of life-history theory is that conditions of early development affect future s... more A major hypothesis of life-history theory is that conditions of early development affect future survival and reproductive success. Responses to detrimental environments during early ontogeny may involve trade-offs between current and future fitness. Yet, the functional mechanisms involved in such evolutionary trade-offs remain poorly documented. 2. The physiological and behavioural ontogeny of diving abilities was examined in subantarctic fur seal (Arctocephalus tropicalis Gray) pups to assess whether the repeated extreme fasts they naturally endure throughout the period of maternal dependence impacts on their development. 3. The ontogeny of pup body oxygen storage capacity was slow, in particular for the muscle compartment, which shows limited increase in myoglobin content (0AE23-0AE85 g 100 g wet muscle )1 ). As a consequence, by the time of weaning, mass-specific oxygen stores had only reached 76%, 24% and 61% of adult female capacity for blood, muscle and total, respectively. Concomitantly, in marked contrast to other pinniped infants, they spent decreasing amounts of time in water (16-7%) with age and exhibited very little diving experience and skills. 4. Overall, in addition to experiencing the longest fasting durations throughout the maternal dependence period, subantarctic fur seal pups demonstrate the lowest levels of mass-specific total oxygen stores and maximum dive duration of any otariid near the age of weaning reported to date. 5. Furthermore, dives that exceeded the calculated aerobic dive limit occurred with a very low frequency (0AE04%), suggesting that behavioural limitations linked to the necessity to conserve energy to survive repeated fasting, rather than restricted oxygen storage capacity, constrained pup diving behaviour. 6. Hence, these animals appear to trade-off the early development of both their physiological and behavioural diving abilities in favour of body fat accumulation to survive the prolonged fasts they must endure and, potentially, provide a nutritional buffer while they locate appropriate food patches after weaning. While promoting pre-weaning survival, this strategy renders pups more vulnerable to unpredictable changes in environmental conditions and food availability at the transition to independent foraging and, thus, could have negative impact on post-weaning survival.
Past tracking studies of marine animals have primarily targeted adults, biasing our understanding... more Past tracking studies of marine animals have primarily targeted adults, biasing our understanding of at-sea habitat use toward older life stages. Anthropogenic threats persist throughout the at-sea ranges of all life stages and it is therefore of interest to population ecologists and managers alike to understand spatiotemporal distributions and possible niche differentiation between age-classes. In albatrosses, particularly little is known about the juvenile life stage when fledglings depart the colonies and venture to sea with no prior experience or parental guidance. We compared the dispersal of 22 fledgling Black-footed Albatross Phoebastria nigripes between 2006 and 2008 using satellite telemetry and 16 adults between 2008 and 2009 using geolocaters from Midway Atoll National Wildlife Refuge, Northwest Hawaiian Islands. Following tag deployment, all fledglings spent several days within the calm atoll waters, then travelled northward until reaching 750-900 km from the colony. At this point, fledgling distributions approached the productive North Pacific Transition Zone (NPTZ). Rather than reaching the high chlorophyll a densities on the leading edge of this zone, however, fledglings remained in areas of low productivity in the subtropical gyre. In contrast, adult albatrosses from the same breeding colony did not utilize the NPTZ at this time of year but rather ranged throughout the highly productive northern periphery of the Pacific Ocean Basin among the shelf regions off Japan and the Aleutian Islands. The dichotomy in habitat use between fledglings and adults from Midway Atoll results in complete spatial segregation between age-classes and suggests ontogenetic niche separation in this species. This research fills a large knowledge gap in at-sea habitat use during a little known yet critical life stage of albatrosses, and contributes to a more comprehensive understanding of differential mortality pressure between age-classes and overall conservation status for the vulnerable Black-footed Albatross.
Thirty to fifty per cent of HIV patients develop HIV associated neurocognitive disorders (HAND) d... more Thirty to fifty per cent of HIV patients develop HIV associated neurocognitive disorders (HAND) despite combined antiretroviral therapy. HIV-1 infected macrophages release viral and cellular proteins that induce neuronal degeneration and death. We hypothesize that changes in the macrophage secretome of HIV-1 seropositive patients with HAND may dissect proteins related to neurotoxicity. Monocyte-derived macrophages (MDM) were isolated from the peripheral blood of 12 HIV+ and 4 HIV- women characterized for neurocognitive function. Serum-free MDM supernatants were collected for protein isolation and quantification with iTRAQ® labeling. Protein identification was performed using a LTQ Orbitrap Velos mass spectrometer and validated in MDM supernatants and in plasma using ELISA. Three proteins were different between NC and ANI, 6 between NC and HAD, and 6 between NC and HAD. Among these, S100A9 was decreased in plasma from patients with ANI, and MMP9 was decreased in the plasma of all HIV...
We hypothesised that comparing the protein mixture in bronchoalveolar lavage fluid (BALF) between... more We hypothesised that comparing the protein mixture in bronchoalveolar lavage fluid (BALF) between humans and mice may lead to mechanistic insights into common and divergent pathways that evolved in each species. BALF from four humans and six mice was pooled separately and underwent identical shotgun proteomic analysis. Functional and network analysis was applied to identify overlapping and distinct pathways enriched in the BALF. Follow-up experiments using Western analysis in unpooled BALF samples were performed. We identified 91 unique proteins in human and 117 unique proteins in mouse BALF samples. Functional analysis of the proteins revealed conservation of several key processes between the species, including defence response. Oxidative stress response, however, was selectively enriched only in mouse BALF. Differences in the expression of peroxiredoxin-1, a key member of the defence pathway against oxidative injury, were confirmed between normal human and mouse BALF and in models...
Calcium signalling is important for differentiation-dependent gene expression, but is also involv... more Calcium signalling is important for differentiation-dependent gene expression, but is also involved in other cellular functions. Therefore, mechanisms must exist to distinguish calcium signalling relevant to differentiation. Calcineurin is a calcium-regulated phosphatase that is required for myogenic gene expression and skeletal muscle differentiation. Here, we demonstrate that inhibition of calcineurin blocks chromatin remodelling and that the Brg1 ATPase of the SWI/SNF chromatin remodelling enzyme, which is required for the activation of myogenic gene expression, is a calcineurin substrate. Furthermore, we identify the calcium-regulated classical protein kinase C β (PKCβ) as a repressor of myogenesis and as the enzyme that opposes calcineurin function. Replacement of endogenous Brg1 with a phosphomimetic mutant in primary myoblasts inhibits myogenesis, whereas replacement with a non-phosphorylatable mutant allows myogenesis despite inhibition of calcineurin signalling, demonstrati...
1.Foraging and migration often require different energetic and movement strategies. Though not re... more 1.Foraging and migration often require different energetic and movement strategies. Though not readily apparent, constraints during one phase might influence the foraging strategies observed in another. For marine birds that fly and dive, body size constraints likely present a trade-off between foraging ability and migration as smaller bodies reduce flight costs whereas larger bodies are advantageous for diving deeper. 2.This study examines individual wintering strategies of deep diving thick-billed murres (Uria lomvia) breeding at three colonies in the south-eastern Bering Sea, St Paul, St George, and Bogoslof. These colonies, arranged north to south, are located such that breeding birds forage in a gradient from shelf to deep-water habitats. 3.We used geolocation time-depth recorders and stable isotopes from feathers to determine differences in foraging behaviour and diet of murres during three non-breeding periods, 2008-11. Body size was quantified by a principal component analysis (wing, culmen, head+bill, and tarsus length). A hierarchical cluster analysis identified winter foraging strategies based on individual movement, diving behaviour, and diet (inferred from stable isotopes). 4.Structural body size differed by breeding island. Larger birds from St Paul had higher wing-loading than smaller birds from St George. Larger birds, mainly from St Paul, dove to deeper depths, spent more time in the Bering Sea, and likely consumed higher trophic-level prey in late winter. Three winter foraging strategies were identified. The main strategy, employed by small birds from all three breeding colonies in the first two years, was characterized by high residency areas in the North Pacific south of the Aleutians and nocturnal diving. In contrast, 31% of birds from St Paul remained in the Bering Sea, and foraged mainly during the day, apparently feeding on higher trophic-level prey. Throat feather stable isotopes indicated that individuals exhibited flexibility in the use of this colony-specific foraging strategy. The third strategy only occurred in 2010/11, when birds dove more and deeper, suggesting limited prey resources. 5.Foraging strategies partitioned with respect to annual differences, presumably in response to shifts in distribution of prey, and were linked to body size. The presence of a colony specific wintering strategy suggests the potential for overwinter survival differences between these populations. This article is protected by copyright. All rights reserved.
Graphical Abstract Highlights d In vivo Mtb screen identifies the membrane-associated oxidoreduct... more Graphical Abstract Highlights d In vivo Mtb screen identifies the membrane-associated oxidoreductase complex (MRC) d The MRC coordinates ROS detoxification and thiol homeostasis during infection d Loss of the MRC reduces thiol recycling and increases sensitivity to oxidative damage d Mtb mutants of MRC components are highly attenuated
Proceedings of IGARSS '94 - 1994 IEEE International Geoscience and Remote Sensing Symposium, 1994
The SIR-C/X-SAR imaging radar took its first flight on the Space Shuttle Endeavour in April 1994.... more The SIR-C/X-SAR imaging radar took its first flight on the Space Shuttle Endeavour in April 1994. This multi-frequency radar has fully polarimetric capability- at L- and C-band, and a single polarization at X-band (X-SAR). Calibration of polarimetric L- and C-band data for all the different modes SIR-C offers is an especially complicated problem. The solution involves extensive analysis of pre-flight
NASA's Jet Propulsion Laboratory is currently building a reconfigurable, polarimetric L-band synt... more NASA's Jet Propulsion Laboratory is currently building a reconfigurable, polarimetric L-band synthetic aperture radar (SAR), specifically designed to acquire airborne repeat track SAR data for differential interferometric measurements. Differentian interferometry can provide key deformation measurements, important for studies of earthquakes, volcanoes and other dynamically changing phenomena. Using precision real-time GPS and a sensor controlled flight management system, the system will be able to fly predefined paths with great precision. The expected performance of the flight control system will constrain the flight path to be within a 10 m diameter tube about the desired flight track. The radar will be designed to be operable on a UAV (Unpiloted Aria1 Vehicle) but will initially be demonstrated on a can a NASA Gulfstream 111. The radar will be fully polarimetric, with a range bandwidth of 80 MHz (2 m range resolution), and will support a 16 km range swath. The antenna will be electronically steered along track to assure that the antenna beam can be directed independently, regardless of the wind direction and speed. Other features supported by the antenna include elevation monopulse and pulse-to-pulse re-steering capabilities that will enable some novel modes of operation. The system will nominally operate a t 45,000 ft (13800 m). The program began as an Instrument Incubator Project (IIP) funded by NASA Earth Science and Technology Office (ESTO).
Cancer cells exhibit modifications in nuclear architecture and transcriptional control. Tumor gro... more Cancer cells exhibit modifications in nuclear architecture and transcriptional control. Tumor growth and metastasis are supported by RUNX family transcriptional scaffolding proteins, which mediate the assembly of nuclear-matrix-associated gene-regulatory hubs. We used proteomic analysis to identify RUNX2-dependent protein-protein interactions associated with the nuclear matrix in bone, breast and prostate tumor cell types and found that RUNX2 interacts with three distinct proteins that respond to DNA damage - RUVBL2, INTS3 and BAZ1B. Subnuclear foci containing these proteins change in intensity or number following UV irradiation. Furthermore, RUNX2, INTS3 and BAZ1B form UV-responsive complexes with the serine-139-phosphorylated isoform of H2AX (γH2AX). UV irradiation increases the interaction of BAZ1B with γH2AX and decreases histone H3 lysine 9 acetylation levels, which mark accessible chromatin. RUNX2 depletion prevents the BAZ1B-γH2AX interaction and attenuates loss of H3K9 and H...
Aquatic toxicology (Amsterdam, Netherlands), Jan 28, 2007
The glutathione S-transferases (GSTs) are a family of phase II detoxification enzymes which prote... more The glutathione S-transferases (GSTs) are a family of phase II detoxification enzymes which protect against chemical injury. In contrast to mammals, GST expression in fish has not been extensively characterized, especially in the context of detoxifying waterborne pollutants. In the Northwestern United States, coho salmon (Oncorhynchus kisutch) are an important species of Pacific salmon with complex life histories that can include exposure to a variety of compounds including GST substrates. In the present study we characterized the expression of coho hepatic GST to better understand the ability of coho to detoxify chemicals of environmental relevance. Western blotting of coho hepatic GST revealed the presence of multiple GST-like proteins of approximately 24-26kDa. Reverse phase HPLC subunit analysis of GSH affinity-purified hepatic GST demonstrated six major and at least two minor potential GST isoforms which were characterized by liquid chromatography electrospray ionization tandem...
BACKGROUND. Functional development of the prostate is governed by stromal mesenchyme induction an... more BACKGROUND. Functional development of the prostate is governed by stromal mesenchyme induction and epithelial response. Stromal/epithelial signaling can be mediated through direct cell-cell contact and diffusible factors and their cell surface receptors. These inducers are likely secreted or membrane-associated extracellular proteins. Given the importance of intercellular communication, it is possible that diseases like cancer could arise from a loss of this communication. One approach to gain a molecular understanding of stromal cells is to identify, as a first step, secreted stromal signaling factors. We proposed to do this by comparative analysis between bladder and prostate. METHODS. Secreted proteins were identified from cultured normal prostate and bladder stromal mesenchyme cells by glycopeptide-capture method followed by mass spectrometry. Differences in protein abundance between prostate and bladder were quantified from calculated peptide ion current area (PICA) followed by Western validation. Functional and pathway analyses of the proteins were carried out by Gene Ontology (GO) and Teranode software. RESULTS. This analysis produced a list of 116 prostate and 84 bladder secreted glycoproteins with ProteinProphet probability scores !0.9. Stromal proteins upregulated in the prostate include cathepsin L, follistatin-related protein, neuroendocrine convertase, tumor necrosis factor receptor, and others that are known to be involved in signal transduction, extracellular matrix interaction, differentiation and transport. CONCLUSIONS. We have identified a number of potential proteins for stromal signaling and bladder or prostate differentiation program. The prostate stromal/ epithelial signaling may be accomplished through activation of the ECM-receptor interaction, complement and coagulation cascades, focal adhesion and cell adhesion pathways.
Thoracic SMT can improve symptoms in patients with subacromial impingement syndrome. However, at ... more Thoracic SMT can improve symptoms in patients with subacromial impingement syndrome. However, at this time the mechanisms of SMT are not well established. It is possible that changes in pain sensitivity may occur following SMT. To assess the immediate pain response in patients with shoulder pain following thoracic spinal manipulative therapy (SMT) using pressure pain threshold (PPT), and to assess the relationship of change in pain sensitivity to patient-rated outcomes of pain and function following treatment. Randomized Controlled Study. Subjects with unilateral subacromial impingement syndrome (n = 45) were randomly assigned to receive treatment with thoracic SMT or sham thoracic SMT. PPT was measured at the painful shoulder (deltoid) and unaffected regions (contralateral deltoid and bilateral lower trapezius areas) immediately pre- and post-treatment. Patient-rated outcomes were pain (numeric pain rating scale - NPRS), function (Pennsylvania Shoulder Score - Penn), and global rating of change (GROC). There were no significant differences between groups in pre-to post-treatment changes in PPT (p ≥ 0.583) nor were there significant changes in PPT within either group (p ≥ 0.372) following treatment. NPRS, Penn and GROC improved across both groups (p < 0.001), but there were no differences between the groups (p ≥ 0.574). There were no differences in pressure pain sensitivity between participants receiving thoracic SMT versus sham thoracic SMT. Both groups had improved patient-rated pain and function within 24-48 h of treatment, but there was no difference in outcomes between the groups.
Mutations in dystrophin lead to Duchenne muscular dystrophy, which is among the most common human... more Mutations in dystrophin lead to Duchenne muscular dystrophy, which is among the most common human genetic disorders. Dystrophin nucleates assembly of the dystrophin-glycoprotein complex (DGC), and a defective DGC disrupts an essential link between the intracellular cytoskeleton and the basal lamina, leading to progressive muscle wasting. In vitro studies have suggested that dystrophin phosphorylation may affect interactions with actin or syntrophin, yet whether this occurs in vivo or affects protein function remains unknown. Utilizing nanoflow liquid chromatography mass spectrometry, we identified 18 phosphorylated residues within endogenous dystrophin. Mutagenesis revealed that phosphorylation at S3059 enhances the dystrophin-dystroglycan interaction and 3D modeling utilizing the Rosetta software program provided a structural model for how phosphorylation enhances this interaction. These findings demonstrate that phosphorylation is a key mechanism regulating the interaction between...
Heat shock protein 90 (hsp90) is an emerging therapeutic target in chronic liver diseases. Hsp90 ... more Heat shock protein 90 (hsp90) is an emerging therapeutic target in chronic liver diseases. Hsp90 plays an important role in liver immune cell activation; however its role in alcoholic liver disease (ALD) remains elusive. Here we hypothesize that hsp90 is crucial in alcohol induced steatosis and pro-inflammatory cytokine production. To test this hypothesis, we employed a pharmacological inhibitor of hsp90, 17-DMAG (17-Dimethylamino-ethylamino-17-demethoxygeldanamycin) in an in vivo mouse model of acute and chronic alcoholic liver injury. C57BL/6 mice were given either a single dose of ethanol via oral gavage (acute) or chronically fed alcohol for 2 weeks followed by oral gavage (chronic-binge). 17-DMAG was administered during or at the end of feeding. Liver injury parameters, inflammatory cytokines and lipid metabolism genes were analysed. Our results reveal increased expression of hsp90 in human and mouse alcoholic livers. In vivo inhibition of hsp90, using 17-DMAG, not only prevented but also alleviated alcoholic liver injury, determined by lower serum ALT, AST and reduced hepatic triglycerides. Mechanistic analysis showed that 17-DMAG decreased alcohol mediated oxidative stress, reduced serum endotoxin, decreased inflammatory cells, and diminished sensitization of liver macrophages to LPS, resulting in downregulation of CD14, NFκB inhibition, and decreased pro-inflammatory cytokine production. Hsp90 inhibition decreased fatty acid synthesis genes via reduced nuclear SREBP-1 and favoured fatty acid oxidation genes via PPARα. Inhibition of hsp90 decreased alcohol induced steatosis and pro-inflammatory cytokines and inhibited alcoholic liver injury. Hsp90 is therefore relevant in human alcoholic cirrhosis and a promising therapeutic target in ALD.
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