cmake_minimum_required(VERSION 3.14)

project(bioseqdb LANGUAGES CXX)

set(CMAKE_CXX_STANDARD 17)

find_package(PostgreSQL REQUIRED COMPONENTS Server)

find_program(PG_CONFIG pg_config)

execute_process(COMMAND ${PG_CONFIG} --pkglibdir OUTPUT_VARIABLE PG_CONFIG_PKGLIBDIR OUTPUT_STRIP_TRAILING_WHITESPACE)

execute_process(COMMAND ${PG_CONFIG} --sharedir OUTPUT_VARIABLE PG_CONFIG_SHAREDIR OUTPUT_STRIP_TRAILING_WHITESPACE)

find_library(BWA_LIBRARIES bwa REQUIRED)

find_library(HTS_LIBRARIES hts REQUIRED)

add_library(bioseqdb SHARED

bioseqdb/bwa.cpp

bioseqdb/extension.cpp

bioseqdb/sequence.cpp

)

add_executable(bioseqdb-import

bioseqdb-import/main.cpp

)

target_include_directories(bioseqdb PRIVATE ${PostgreSQL_TYPE_INCLUDE_DIR})

target_link_libraries(bioseqdb PRIVATE ${HTS_LIBRARIES} ${BWA_LIBRARIES})

target_include_directories(bioseqdb-import PRIVATE ${PostgreSQL_INCLUDE_DIRS})

target_link_libraries(bioseqdb-import PRIVATE ${PostgreSQL_LIBRARIES})

install(TARGETS bioseqdb DESTINATION ${PG_CONFIG_PKGLIBDIR})

install(FILES bioseqdb/bioseqdb.control DESTINATION ${PG_CONFIG_SHAREDIR}/extension)

install(FILES bioseqdb/bioseqdb--0.0.0.sql DESTINATION ${PG_CONFIG_SHAREDIR}/extension)

install(TARGETS bioseqdb-import)