Tandem repeat expansion detection or genotyping from long-read alignments
-
Updated
Nov 25, 2024 - Python
#
tandem-repeats
Here are 29 public repositories matching this topic...
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
-
Updated
Jun 17, 2024 - C
Toolkit for VNTR genotyping and repeat-pan genome graph construction
-
Updated
Dec 12, 2024 - Python
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
-
Updated
Jun 17, 2024 - C
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
nanopore genomics alignment variant-calling tandem-repeats copy-number-variation long-reads ont-data
-
Updated
Jul 11, 2022 - Python
A python library for decomposing and visualizing tandem repeat sequences
-
Updated
Feb 23, 2024 - Python
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
-
Updated
Sep 7, 2023 - C++
Universal STR Allele Toolkit (USAT) for viewing and comparison
-
Updated
Nov 26, 2022 - Java
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
-
Updated
Aug 6, 2024 - Python
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
bioinformatics proteins multithreading cpp11 edit-distance dna rna tandem-repeats cplusplus-11 biological-sequences independent-study suffix-array computer-science-department brooklyn-college cisc-5001 landau-vishkin
-
Updated
May 27, 2020 - C++
Targeted characterisation of short structural variation.
-
Updated
Jan 12, 2022 - Python
Computational, High-throughput Individual Identification through Microsatellite Profiling
-
Updated
Aug 9, 2023 - R
Discover VNTR-associated DELs that are hard to find using Illumina reads
genomics tandem-repeats sequence-alignment whole-exome-sequencing whole-genome-sequencing illumina-sequencing structural-variation rare-variant-analysis rare-disease
-
Updated
Jan 17, 2023 - Jupyter Notebook
This program can detect repeated sequences in DNA.
python jupyter-notebook python3 detector dna sequence tandem-repeats dna-sequences sequence-analysis dna-sequencing
-
Updated
May 5, 2020 - Jupyter Notebook
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
-
Updated
Oct 21, 2020 - C
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
-
Updated
Mar 13, 2021 - C++
Supporting code for the microsatellite genotyping paper introducing CHIIMP
-
Updated
Feb 1, 2021 - Makefile
Improve this page
Add a description, image, and links to the tandem-repeats topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the tandem-repeats topic, visit your repo's landing page and select "manage topics."