Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
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Oct 29, 2024 - Python
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mitochondria
Here are 58 public repositories matching this topic...
NOVOPlasty - The organelle assembler and heteroplasmy caller
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Feb 4, 2024 - Perl
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
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Dec 11, 2024 - Python
A python and C++ library for reading and writing neuronal morphologies
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Dec 3, 2024 - C++
a tool for predicting mitochondrial DNA deletions using soft-clipping
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Feb 3, 2022 - Python
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
deep-learning electron-microscopy 3d 2d instance-segmentation mitochondria panoptic-segmentation napari-plugin
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Aug 6, 2024 - Python
Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
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Jan 16, 2024 - Python
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
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Jul 29, 2013 - C
Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
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Jul 13, 2023 - HTML
Module and script to remove contamination in assembled genomes before submission to ncbi
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Apr 30, 2018 - Python
visualization of the human mitochondrial genome
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Jan 30, 2018 - R
A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.
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Apr 18, 2019 - Groovy
EM segmentation of mitochondria from SNEMI3D data
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Sep 4, 2020 - Jupyter Notebook
Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.
genome autoencoder rna convolutional-neural-networks convolutional-autoencoder embedding rna-editing mitochondria posttranslational-modification rna-sequence angiosperms
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Aug 5, 2024 - Jupyter Notebook
El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.
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Sep 25, 2024 - R
MToolBox pipeline written in snakemake to allow a better scalability
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Jun 26, 2023 - Python
Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics
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Nov 1, 2019 - Python
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
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Jul 31, 2024 - Python
Toolbox for Identifying Mitochondria Instance Segmentation Errors
machine-learning statistics computer-vision deep-learning medical-imaging instance-segmentation mitochondria
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Oct 15, 2023 - Python
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