Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

This repository contains the python package for Helical

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Sequence alignment tools

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Find and visualize rearrangements in DNA sequences

A python wrapper for the benchling api

A python package and a set of shell commands to handle GTF files

👾 Generate identicons for DNA sequences with Python

Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

Read DNA sequences from colourful Microsoft Word documents

Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).

This bartender version could handle arbitrary length of barcode

Binomica Public Repository for Biological Parts

🍶 Genome assembly with short sequence reads

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Web application for designing DNA structures such as DNA origami.